Psyllid ID: psy2881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHccccccEEcccccccHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcHHHcccEccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEHHHcHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHcccEEEEEccccHHHEEEccHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLekplifkkckpFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILgkyndvpvisekkitdpaAIAFNAIniaqkkntdivivdtsgrlstQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIItkldgttkGGILAAIAKkysiplyfigiGEKIEDLQIFNAVDFVNALLNQN
Flexible Loop (DISEMBL)
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGvngvgktttIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNainiaqkkntdiVIVDtsgrlstqshlmRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIitkldgttkGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN
Low Complexity Region (SEG)
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQvrnvlhnllvnllKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPaaiafnainiaQKKNTDIVIVDTSGRLSTQSHLMRELkkikkviekkiFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN
Disordered region (IsUnstruct)
***NWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL***
Disordered Region (DISOPRED)
**INWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI********TEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ*
Disordered Region (DISEMBL)
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN
Disordered Region (DISPRO)
*KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
P57011	421	Signal recognition partic	yes	N/A	0.986	0.707	0.483	6e-82
P57010	421	Signal recognition partic	yes	N/A	0.986	0.707	0.483	7e-82
O30391	421	Signal recognition partic	N/A	N/A	0.986	0.707	0.480	7e-81
P14929	416	Signal recognition partic	yes	N/A	0.983	0.713	0.483	6e-79
P10121	497	Signal recognition partic	N/A	N/A	0.986	0.599	0.483	2e-72
Q8KA77	351	Signal recognition partic	yes	N/A	0.986	0.849	0.460	2e-71
P57137	378	Signal recognition partic	yes	N/A	0.917	0.732	0.472	7e-69
P51835	329	Signal recognition partic	yes	N/A	0.860	0.790	0.460	6e-64
P44870	414	Signal recognition partic	yes	N/A	0.980	0.714	0.455	2e-63
A9CHH2	478	Signal recognition partic	yes	N/A	0.983	0.621	0.409	3e-62

>sp|P57011|FTSY_NEIMB Signal recognition particle receptor FtsY OS=Neisseria meningitidis serogroup B (strain MC58) GN=ftsY PE=3 SV=1

 Score =  304 bits (778), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 215/304 (70%), Gaps = 6/304 (1%)

Query: 2   KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K+ W  RLK+ L+K+    A +L  +    +ID++LY ELE+ L+ +D+G E T++L+ +
Sbjct: 119 KLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKD 178

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
           ++  +  K L +  ++R  L   L +L+K LEKPL+  + K PFVIM+ G+NG GKTT+I
Sbjct: 179 VRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSI 238

Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176
           GKLA YF+ + KSVLLAA DTFRAAA EQL   G+ N+V VIS+    D AA+ F+A+  
Sbjct: 239 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQT-TGDSAAVCFDAVQA 297

Query: 177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236
           A+ +  DIV+ DT+GRL TQ HLM E+KK+K+V++K + + P+EI +++D N GQN ++Q
Sbjct: 298 AKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQ 357

Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
           +K F   L +TGLI+TKLDGT KGGILAA+A    +P+ +IG+GE I+DL+ F+A  FV+
Sbjct: 358 VKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVD 417

Query: 297 ALLN 300
           ALL+
Sbjct: 418 ALLD 421

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

>sp|P57010|FTSY_NEIMA Signal recognition particle receptor FtsY OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=ftsY PE=3 SV=1

 Score =  303 bits (777), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 215/304 (70%), Gaps = 6/304 (1%)

Query: 2   KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K+ W  RLK+ L+K+    A +L  +    +ID++LY ELE+ L+ +D+G E T++L+ +
Sbjct: 119 KLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKD 178

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
           ++  +  K L +  ++R  L   L +L+K LEKPL+  + K PFVIM+ G+NG GKTT+I
Sbjct: 179 VRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSI 238

Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176
           GKLA YF+ + KSVLLAA DTFRAAA EQL   G+ N+V VIS+    D AA+ F+A+  
Sbjct: 239 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQT-TGDSAAVCFDAVQA 297

Query: 177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236
           A+ +  DIV+ DT+GRL TQ HLM E+KK+K+V++K + + P+EI +++D N GQN ++Q
Sbjct: 298 AKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQ 357

Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
           +K F   L +TGLI+TKLDGT KGGILAA+A    +P+ +IG+GE I+DL+ F+A  FV+
Sbjct: 358 VKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVD 417

Query: 297 ALLN 300
           ALL+
Sbjct: 418 ALLD 421

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

>sp|O30391|FTSY_NEIMC Signal recognition particle receptor FtsY OS=Neisseria meningitidis serogroup C GN=ftsY PE=3 SV=1

 Score =  300 bits (769), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/304 (48%), Positives = 214/304 (70%), Gaps = 6/304 (1%)

Query: 2   KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K+ W  RLK+ L+K+    A +L  +    +ID++LY ELE+ L+ +D+  E T++L+ +
Sbjct: 119 KLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMDMEATEYLMKD 178

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
           ++  +  K L +  ++R  L   L +L+K LEKPL+  + K PFVIM+ G+NG GKTT+I
Sbjct: 179 VRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSI 238

Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176
           GKLA YF+ + KSVLLAA DTFRAAA EQL   G+ N+V VIS+    D AA+ F+A+  
Sbjct: 239 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQT-TGDSAAVCFDAVQA 297

Query: 177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236
           A+ +  DIV+ DT+GRL TQ HLM E+KK+K+V++K + + P+EI +++D N GQN ++Q
Sbjct: 298 AKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQ 357

Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
           +K F   L +TGLI+TKLDGT KGGILAA+A    +P+ +IG+GE I+DL+ F+A  FV+
Sbjct: 358 VKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVD 417

Query: 297 ALLN 300
           ALL+
Sbjct: 418 ALLD 421

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Neisseria meningitidis serogroup C (taxid: 135720)

>sp|P14929|FTSY_NEIGO Signal recognition particle receptor FtsY OS=Neisseria gonorrhoeae GN=ftsY PE=1 SV=2

 Score =  294 bits (752), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 209/304 (68%), Gaps = 7/304 (2%)

Query: 2   KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K+ W  RLK+ L+K+    A +L  +    +I ++LY ELE+ L+  D+G E T++L+ +
Sbjct: 115 KLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKD 174

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
           ++  +  K L +  ++R  L   L +L+K LEKPL+  + K PFVIM+ G+NG GKTT+I
Sbjct: 175 VRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSI 234

Query: 117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI 176
           GKLA YF+ + KSVLLAA DTFRAAA EQL   G  N+V VIS+    D AA+ F+A+  
Sbjct: 235 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQT-TGDSAAVCFDAVQA 293

Query: 177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ 236
           A K   DIV+ DT+GRL TQ HLM E+KK+K+V++K I   P+EI +++D N GQN ++Q
Sbjct: 294 A-KARIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQ 352

Query: 237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
           +K F   L +TGLI+TKLDGT KGGILAA+A    +P+ +IG+GE I+DL+ F+A  FV+
Sbjct: 353 VKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVD 412

Query: 297 ALLN 300
            LL+
Sbjct: 413 RLLD 416

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane (Probable). Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Neisseria gonorrhoeae (taxid: 485)

>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli (strain K12) GN=ftsY PE=1 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/302 (48%), Positives = 208/302 (68%), Gaps = 4/302 (1%)

Query: 2   KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K  +  RLK SL KT  NL S    L   KKID +L+ ELE  LL ADVG ETT+ ++  
Sbjct: 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
           L +    K+L + E +  +L   +  +L  +++PL  +   PFVI++VGVNGVGKTTTIG
Sbjct: 252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311

Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
           KLA  F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++    D A++ F+AI  A
Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371

Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
           + +N D++I DT+GRL  +SHLM ELKKI +V++K   E P+E+ L ID +TGQN +SQ 
Sbjct: 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431

Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
           K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct: 432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491

Query: 298 LL 299
           L 
Sbjct: 492 LF 493

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q8KA77|FTSY_BUCAP Signal recognition particle receptor FtsY OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=ftsY PE=3 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 206/302 (68%), Gaps = 4/302 (1%)

Query: 2   KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           KI+++ +LK SL+KT      ++  + ++KKID   + ELE  +L +D+G  TT  ++++
Sbjct: 48  KIDFLFKLKNSLNKTKQFFGDSISRIFLSKKIDDAFFEELEDTMLLSDIGVHTTDQIISK 107

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
           L      K+L N E+V  +L   + ++L  +EKPL      PFVI++VG+NG GKTTT+ 
Sbjct: 108 LINDATHKELKNPEKVYFLLKEHMYSILNRVEKPLKISNHTPFVILVVGINGTGKTTTVS 167

Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
           KLA  +K   KSV+LAA DTFRAA  EQL ILGK N++PVIS+   +DPA++AF+A+  A
Sbjct: 168 KLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRNNIPVISQSSGSDPASVAFDAVKSA 227

Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
             K  D++I+DT+GRL  + HL+ ELKK+ +VI+K     P+EI LIID   GQNT+ Q 
Sbjct: 228 ISKKIDVLIIDTAGRLHNKLHLLEELKKMVRVIKKLNLSAPHEIMLIIDACNGQNTIKQT 287

Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
           + F K + +TGL+ITKLDGT KGG++ ++A ++ IP+ +IGIGEK  DL +FN+ DF+ +
Sbjct: 288 EMFHKAINLTGLVITKLDGTAKGGVIFSLANQFLIPIRYIGIGEKTTDLVVFNSNDFIKS 347

Query: 298 LL 299
           + 
Sbjct: 348 IF 349

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

>sp|P57137|FTSY_BUCAI Signal recognition particle receptor FtsY OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=ftsY PE=3 SV=1

 Score =  260 bits (665), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 194/277 (70%)

Query: 23  LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLV 82
           + ++KKID+ L+ ELE  +L AD+G  TT  +++ L K +  + L N+E++  +L   + 
Sbjct: 101 IFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYFLLKRKMF 160

Query: 83  NLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA 142
           N+LK +E PL      PFVI++VGVNG GKTTT+ KLA  +K   KS++LAA DTFRAA 
Sbjct: 161 NILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIMLAAADTFRAAG 220

Query: 143 YEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRE 202
            EQL  LGK N++PVI+++  +DPAA+ F+A+  A+ K  D++I+DT+GRL  + HL+ E
Sbjct: 221 IEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGRLHNKLHLIEE 280

Query: 203 LKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGI 262
           LKKI +VI+K     P+E  LIID   GQNT+ Q + F K L +TG+IITKLDGT KGG+
Sbjct: 281 LKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIITKLDGTAKGGV 340

Query: 263 LAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
           + ++A ++ IP+ +IGIGEK++DL  FN+ +F+ ++ 
Sbjct: 341 VFSLADQFQIPIRYIGIGEKMQDLGHFNSQEFIESIF 377

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

>sp|P51835|FTSY_BACSU Signal recognition particle receptor FtsY OS=Bacillus subtilis (strain 168) GN=ftsY PE=1 SV=2

 Score =  244 bits (623), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/263 (46%), Positives = 184/263 (69%), Gaps = 3/263 (1%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEK---PLIFKKC 97
           L+ ADVGF T   L++ELKK +  + + + ++V++V+   LV +  S ++    L  +  
Sbjct: 59  LISADVGFTTVMELIDELKKEVKRRNIQDPKEVQSVISEKLVEIYNSGDEQISELNIQDG 118

Query: 98  KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
           +  VI++VGVNGVGKTTTIGKLA+  K+  KSV+LAA DTFRA A EQL + G+   VPV
Sbjct: 119 RLNVILLVGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPV 178

Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
           I +   +DPAA+ ++A++ A+ +N D++I DT+GRL  + +LM+EL+K+K+VIE+++ E 
Sbjct: 179 IKQTAGSDPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEA 238

Query: 218 PYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI 277
           P+E+ L +D  TGQN ++Q KEFSK   +TG+ +TKLDGT KGGI+ AI  +  IP+  +
Sbjct: 239 PHEVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLV 298

Query: 278 GIGEKIEDLQIFNAVDFVNALLN 300
           G+GEK++DLQ F+   +V  L +
Sbjct: 299 GLGEKVDDLQEFDPESYVYGLFS 321

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/301 (45%), Positives = 202/301 (67%), Gaps = 5/301 (1%)

Query: 4   NWITRLKESLSKTACNL----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK 59
            + +RL + L KT  N+    +   + KKID  L+ ELE  LL AD+G  TT  ++  L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 168

Query: 60  KIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPL-IFKKCKPFVIMIVGVNGVGKTTTIGK 118
           +    K+L + E +   L   + ++L+ + +PL I    KP+VI++VGVNGVGKTTTIGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 228

Query: 119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ 178
           LA  F+   KSV+LAA DTFRAAA EQL + G+ N +PV+++   +D A++ F+A+  A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIK 238
            +N DI+I DT+GRL  +++LM ELKKI +V++K     P+EI L +D  TGQN +SQ K
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
            F++ + +TG+ +TKLDGT KGG++ AIA ++ +P+ +IG+GEKIEDL+ FNA +F+ AL
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 299 L 299
            
Sbjct: 409 F 409

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|A9CHH2|FTSY_AGRT5 Signal recognition particle receptor FtsY OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ftsY PE=3 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 186/303 (61%), Gaps = 6/303 (1%)

Query: 1   MKINWITRLKESLSKTACNL----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLN 56
           +K+ W  RL+  L++T+  L     +L   +K+D++  +ELE  L+++D+G ET   +  
Sbjct: 174 VKLTWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITG 233

Query: 57  ELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFK-KCKPFVIMIVGVNGVGKTTT 115
            L    Y K + + E V  ++   +  +LK + KPL      KP VI++VGVNG GKTTT
Sbjct: 234 ALSSERYGKDV-SGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTT 292

Query: 116 IGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN 175
           IGKLA         V+LAA DTFRAAA EQL I         I  K   D A +A++A  
Sbjct: 293 IGKLAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSEFIGTKLGADAAGLAYDAYE 352

Query: 176 IAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLS 235
            A+ + +D++I+DT+GRL  ++ LM EL+KI +V+ K   + P+ +   +D  TGQN ++
Sbjct: 353 QARAQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNAMN 412

Query: 236 QIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFV 295
           Q++ F  +  ++GLI+TKLDGT +GGIL AIA K+ +P+YFIG+GE +EDL+ F A DF 
Sbjct: 413 QVEIFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVEDLEPFEAEDFA 472

Query: 296 NAL 298
            A+
Sbjct: 473 KAI 475

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
300313432	321	signal recognition particle GTPase invol	0.986	0.928	0.571	8e-99
409407966	308	signal recognition particle GTPase invol	0.986	0.967	0.568	9e-98
398835223	378	signal recognition particle-docking prot	0.986	0.788	0.568	2e-97
134096064	408	signal recognition particle receptor [He	0.986	0.730	0.575	3e-97
152980422	419	signal recognition particle receptor [Ja	0.986	0.711	0.565	2e-95
399019235	401	signal recognition particle-docking prot	0.986	0.743	0.558	7e-95
340785776	374	signal recognition particle receptor pro	0.986	0.796	0.591	9e-95
115352920	386	signal recognition particle-docking prot	0.986	0.772	0.528	7e-92
295675394	384	signal recognition particle-docking prot	0.986	0.776	0.535	1e-91
167585413	345	Cell division transporter substrate-bind	0.986	0.863	0.525	2e-91

>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase involved in cell division protein [Herbaspirillum seropedicae SmR1] gi|300076217|gb|ADJ65616.1| signal recognition particle GTPase involved in cell division protein [Herbaspirillum seropedicae SmR1]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 171/299 (57%), Positives = 228/299 (76%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W++RLK  LSKT+ NL +L V  +ID++LY ELES LL +D G E TQ+LL+ELKK 
Sbjct: 24  KRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLVSDAGVEATQWLLDELKKK 83

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + +++L    QVR  L  LL+ LL+ L++PL+  + KP V+MI GVNG GKTTTIGKLA 
Sbjct: 84  VKAERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLAL 143

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL + G+ N+V VI+++   DPAA+A+++++ AQ + 
Sbjct: 144 HLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQES-GDPAAVAYDSVHSAQARG 202

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T +V+VDT+GRL TQ HLM ELKKIK+VI K +   P+E+ L+IDGNTGQN L+Q+K F 
Sbjct: 203 THVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNTGQNALAQVKAFD 262

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL++TKLDGT KGGILAAIAK   +PLYFIG+GE+IEDLQ FNA +FV+ALL+
Sbjct: 263 DALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVDALLS 321

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409407966|ref|ZP_11256410.1| signal recognition particle GTPase involved in cell division protein [Herbaspirillum sp. GW103] gi|386432422|gb|EIJ45249.1| signal recognition particle GTPase involved in cell division protein [Herbaspirillum sp. GW103]

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 229/299 (76%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W++RLK  LSKT+ NL +L V  +ID++LY ELES LL +D G E T++LL+ELKK 
Sbjct: 11  KRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELESALLMSDAGVEATRWLLDELKKK 70

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + +++L    QVR  L  LL++LL+ L++PL+  + KP V+MI GVNG GKTTTIGKLA 
Sbjct: 71  VKNERLTEAAQVRTALRALLIDLLQPLQRPLVLGREKPLVMMIAGVNGAGKTTTIGKLAL 130

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL + G+ N+V VI+++   DPAA+A+++++ AQ + 
Sbjct: 131 HLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQES-GDPAAVAYDSVHSAQARG 189

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T +V+VDT+GRL TQ HLM ELKKIK+VI K +   P+E+ L+IDGNTGQN L+Q+K F 
Sbjct: 190 THVVMVDTAGRLPTQLHLMDELKKIKRVIAKAMNSAPHEVLLVIDGNTGQNALAQVKAFD 249

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL++TKLDGT KGGILAAIAK   +PLYFIG+GE+IEDLQ FNA +FV+ALL+
Sbjct: 250 DALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVDALLS 308

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398835223|ref|ZP_10592588.1| signal recognition particle-docking protein FtsY [Herbaspirillum sp. YR522] gi|398216798|gb|EJN03339.1| signal recognition particle-docking protein FtsY [Herbaspirillum sp. YR522]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 229/299 (76%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+TRLK  LSKT+ NL +L V  +ID +LY ELES LL +D G + T++LL+ELKK 
Sbjct: 81  KRSWLTRLKSGLSKTSSNLTTLFVGARIDDDLYEELESALLVSDAGVDATRWLLDELKKK 140

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + +++L    QVR  L  LL+ LL+ L++PL+  + +P V+MI GVNG GKTTTIGKLA 
Sbjct: 141 VKAERLTEAAQVRTALRALLIELLRPLQRPLVLGREQPLVMMIAGVNGAGKTTTIGKLAL 200

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +  ++SVLLAA DTFRAAA EQL + G+ N+V VI+++   DPAA+AF+A++ AQ + 
Sbjct: 201 HLQAHQQSVLLAAGDTFRAAAREQLAVWGERNNVSVIAQES-GDPAAVAFDAVHSAQARG 259

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T++V++DT+GRL TQ HLM ELKKIK+VI K +   P+EI L+IDGNTGQN L+Q+K F 
Sbjct: 260 TNVVMIDTAGRLPTQLHLMDELKKIKRVIAKGMASAPHEILLVIDGNTGQNALAQVKAFD 319

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL++TKLDGT KGGILAAIAK   +PLYFIG+GE+IEDLQ F+A +FV+ALL+
Sbjct: 320 DALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQPFDATEFVDALLS 378

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134096064|ref|YP_001101139.1| signal recognition particle receptor [Herminiimonas arsenicoxydans] gi|133739967|emb|CAL63018.1| Cell division protein FtsY homolog [Herminiimonas arsenicoxydans]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/299 (57%), Positives = 225/299 (75%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+ RLK  LSKT+ NL +L V  KID++LY ELES LL +D G + TQFLL ELK+ 
Sbjct: 111 KQSWMARLKVGLSKTSSNLTTLFVGAKIDEDLYEELESALLMSDAGVDATQFLLTELKRK 170

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + ++KL    QV+  L +LL+ +L  L+KPL+  + +P V+MI GVNG GKTTTIGKLA 
Sbjct: 171 VRNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLGQHQPLVMMITGVNGAGKTTTIGKLAK 230

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL + G+ N+V VI+++   DPAA+AF+A++ AQ + 
Sbjct: 231 HLQAHHQSVLLAAGDTFRAAAREQLTVWGERNNVTVIAQES-GDPAAVAFDAVHSAQARG 289

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T++V+VDT+GRL TQ HLM ELKKIK+VI K +   P+EI LIIDGNTGQN L+Q+K F 
Sbjct: 290 TNVVMVDTAGRLPTQLHLMEELKKIKRVIAKGMSSAPHEILLIIDGNTGQNALTQVKAFD 349

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL++TKLDGT KGG+LAAIA+   IP+YFIG+GE+IEDLQ FNA +FV ALL 
Sbjct: 350 DALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQEFVEALLG 408

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980422|ref|YP_001354829.1| signal recognition particle receptor [Janthinobacterium sp. Marseille] gi|151280499|gb|ABR88909.1| signal recognition particle receptor [Janthinobacterium sp. Marseille]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/299 (56%), Positives = 224/299 (74%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+ RLK  LSKT+ NL +L V  KID +LY ELES LL +D G + TQFLL+ LK+ 
Sbjct: 122 KQSWMARLKVGLSKTSTNLTTLFVGAKIDDDLYEELESALLMSDAGVDATQFLLDALKRK 181

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + ++KL    QV+  L +LL+ +L  L+KPL+  + +P V+MI GVNG GKTTTIGKLA 
Sbjct: 182 VKNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLGQHQPLVMMITGVNGAGKTTTIGKLAK 241

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL + G+ N+V VI+++   DPAA+AF+A++ AQ + 
Sbjct: 242 HLQAHNQSVLLAAGDTFRAAAREQLTVWGQRNNVTVIAQES-GDPAAVAFDAVHSAQARG 300

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T++V+VDT+GRL TQ HLM ELKK+K+V+ K +   P+EI LIIDGNTGQN L+Q+K F 
Sbjct: 301 TNVVMVDTAGRLPTQLHLMEELKKVKRVMAKGMASAPHEILLIIDGNTGQNALTQVKAFD 360

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL++TKLDGT KGG+LAAIA+   IP+YFIG+GE+IEDLQ FNA +FV ALL 
Sbjct: 361 DALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQEFVEALLG 419

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399019235|ref|ZP_10721384.1| signal recognition particle-docking protein FtsY [Herbaspirillum sp. CF444] gi|398098382|gb|EJL88669.1| signal recognition particle-docking protein FtsY [Herbaspirillum sp. CF444]

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 167/299 (55%), Positives = 224/299 (74%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+ RLK  LSKT+ NL +L +  KI   LY ELES LL +D G E TQFLL+ L+K 
Sbjct: 104 KRSWLARLKSGLSKTSSNLTTLFIGAKIGDELYEELESALLVSDAGVEATQFLLDSLRKK 163

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           +  +KL   +QVR  L  LL+++L+ L+KPL+  + +P V+MI GVNG GKTTTIGKLA 
Sbjct: 164 VKDEKLTEADQVRQALRALLIDMLRPLQKPLVLGRHQPLVMMIAGVNGAGKTTTIGKLAK 223

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL I G+ N++ VI+++   DPAA+A++A++ A  + 
Sbjct: 224 HLQAHDQSVLLAAGDTFRAAAREQLTIWGERNNITVIAQES-GDPAAVAYDAVHSATARG 282

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T++V+VDT+GRL TQ HLM ELKKIK+VI K +   P+E+ L+IDGNTGQN L+Q+K F 
Sbjct: 283 TNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMDTAPHEVLLVIDGNTGQNALAQVKAFD 342

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL++TKLDGT KGGILAAIAK   +PLYFIG+GE+I+DLQ F+A +FV+ALL+
Sbjct: 343 DALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIDDLQAFDAEEFVDALLS 401

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340785776|ref|YP_004751241.1| signal recognition particle receptor protein FtsY (alpha subunit) [Collimonas fungivorans Ter331] gi|340551043|gb|AEK60418.1| Signal recognition particle receptor protein FtsY (alpha subunit) [Collimonas fungivorans Ter331]

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 177/299 (59%), Positives = 225/299 (75%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W++RLK  LSKT+ NL  L V  KID +LY ELES LL +D G + T FLLN LKK 
Sbjct: 77  KRSWLSRLKTGLSKTSSNLSILFVGAKIDDDLYEELESALLVSDAGVDATHFLLNALKKK 136

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           +   KL    QV+  L +LL++LL  L+KPL+  + +P VIMI GVNG GKTTTIGKLA 
Sbjct: 137 VKDDKLTEAVQVKAALRSLLIDLLTPLQKPLVLDQHQPLVIMIAGVNGAGKTTTIGKLAK 196

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +  K+SVLLAA DTFRAAA EQL I G+ N+V VIS++   DPAA+AF+A++ AQ + 
Sbjct: 197 HLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNVTVISQES-GDPAAVAFDAVHSAQARG 255

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
           T++V+VDT+GRL TQ HLM ELKKIK+VI K +   P+EI L+IDGNTGQN L+Q+K F 
Sbjct: 256 TNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVIDGNTGQNALAQVKAFD 315

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGL+ITKLDGT KGG+LAAIA   +IP+YFIG+GE+IEDLQ F+A +FV+ALLN
Sbjct: 316 DALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFDAAEFVDALLN 374

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|115352920|ref|YP_774759.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria AMMD] gi|115282908|gb|ABI88425.1| signal recognition particle-docking protein FtsY [Burkholderia ambifaria AMMD]

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 158/299 (52%), Positives = 223/299 (74%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+TRLK  L+KT  ++  + VN KID++LY ELE+ LL +D G + T++LL  L++ 
Sbjct: 89  KKSWLTRLKTGLAKTGSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYLLGALREK 148

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + + +L + +QV++ LH+LLV LLK LEK L+  + +P V+MI GVNG GKTT+IGKLA 
Sbjct: 149 VKTGRLTDPQQVKSALHDLLVELLKPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAK 208

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL + G+ N+V V+ ++   DPAA+ F+A++ A+ + 
Sbjct: 209 HLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQES-GDPAAVIFDAVSAARARK 267

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++ DT+GRL TQ HLM ELKK+K+VI K     P+E+ L+ID NTGQN L+Q+K F 
Sbjct: 268 IDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQVKAFD 327

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGLI+TKLDGT KGGILAAIA++  +P+YFIG+GEK+EDLQ FNAV+F +AL +
Sbjct: 328 DALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAVEFADALFD 386

Source: Burkholderia ambifaria AMMD

Species: Burkholderia ambifaria

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|295675394|ref|YP_003603918.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1002] gi|295435237|gb|ADG14407.1| signal recognition particle-docking protein FtsY [Burkholderia sp. CCGE1002]

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/299 (53%), Positives = 221/299 (73%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+TRLK  L+KT+ NL  + V  KID++LY ELE+ LL +D G E T+FLL  L++ 
Sbjct: 86  KRSWLTRLKSGLAKTSSNLTGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLREK 145

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + S++L + +QV+  L  LLV LLK LEK L+  + +P V+MI GVNG GKTT+IGKLA 
Sbjct: 146 VRSERLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAK 205

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL + G+ N+V V++++   DPAA+ F+A+  A+ +N
Sbjct: 206 HLQSFHQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQES-GDPAAVIFDAVGAARARN 264

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++ DT+GRL TQ HLM EL+K+K+VI K     P+E+ L+ID NTGQN L+Q+K F 
Sbjct: 265 IDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALTQVKAFD 324

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGLI+TKLDGT KGGILAAIA++  IP+YFIG+GEK++DLQ F+A +F +ALL 
Sbjct: 325 DALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVDDLQPFSAEEFSDALLG 383

Source: Burkholderia sp. CCGE1002

Species: Burkholderia sp. CCGE1002

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|167585413|ref|ZP_02377801.1| Cell division transporter substrate-binding protein FtsY [Burkholderia ubonensis Bu]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/299 (52%), Positives = 224/299 (74%), Gaps = 1/299 (0%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKI 61
           K +W+ RLK  L+KT+ ++  + V+ KID++LY ELE+ LL +D G + T++LL+ L++ 
Sbjct: 48  KKSWLARLKSGLAKTSSSITGVFVSTKIDEDLYEELETALLMSDAGVDATEYLLDALREK 107

Query: 62  IYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           + + +L + +QV+  LH+LLV+LLK LEK L+  + +P V+MI GVNG GKTT+IGKLA 
Sbjct: 108 VRTGRLTDPQQVKAALHDLLVDLLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAK 167

Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN 181
           + +   +SVLLAA DTFRAAA EQL I G+ N+V V+ ++   DPAA+ F+A++ A+ + 
Sbjct: 168 HLQSFDQSVLLAAGDTFRAAAREQLTIWGERNNVTVVQQES-GDPAAVIFDAVSAARARG 226

Query: 182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++ DT+GRL TQ HLM ELKK+K+VI K     P+E+ L+ID NTGQN L+Q+K F 
Sbjct: 227 IDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQVKAFD 286

Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             L +TGLI+TKLDGT KGGILAAIA++  +P+YFIG+GEK+EDLQ F+AV+F +ALL 
Sbjct: 287 DALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG 345

Source: Burkholderia ubonensis Bu

Species: Burkholderia ubonensis

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
UNIPROTKB|P10121	497	ftsY "SRP receptor" [Escherich	0.983	0.597	0.445	3.1e-60
TIGR_CMR|CPS_0157	481	CPS_0157 "signal recognition p	0.993	0.623	0.429	3.1e-60
TIGR_CMR|CBU_1903	324	CBU_1903 "signal recognition p	0.990	0.922	0.436	1.7e-59
TIGR_CMR|SO_4586	510	SO_4586 "signal recognition pa	0.993	0.588	0.426	1.9e-58
TIGR_CMR|VC_0147	391	VC_0147 "signal recognition pa	0.986	0.762	0.429	6.6e-58
TIGR_CMR|CHY_1442	303	CHY_1442 "signal recognition p	0.986	0.983	0.423	3.3e-56
TIGR_CMR|GSU_1132	350	GSU_1132 "signal recognition p	0.963	0.831	0.425	1.3e-50
TIGR_CMR|ECH_1111	310	ECH_1111 "signal recognition p	0.976	0.951	0.382	3.6e-50
TIGR_CMR|BA_3985	329	BA_3985 "signal recognition pa	0.963	0.884	0.374	7.7e-48
TIGR_CMR|SPO_1339	390	SPO_1339 "signal recognition p	0.907	0.702	0.367	7.7e-48

UNIPROTKB|P10121 ftsY "SRP receptor" [Escherichia coli K-12 (taxid:83333)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 134/301 (44%), Positives = 186/301 (61%)

Query:     2 KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
             K  +  RLK SL KT  NL S    L   KKID +L+ ELE  LL ADVG ETT+ ++  
Sbjct:   192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251

Query:    58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
             L +    K+L + E                +++PL  +   PFVI++VGVNGVGKTTTIG
Sbjct:   252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311

Query:   118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXX 177
             KLA  F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++    D            
Sbjct:   312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371

Query:   178 QKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQI 237
             + +N D++I DT+GRL  +SHLM EL            E P+E+ L ID +TGQN +SQ 
Sbjct:   372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431

Query:   238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
             K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct:   432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491

Query:   298 L 298
             L
Sbjct:   492 L 492

GO:0006184 "GTP catabolic process" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0031226 "intrinsic to plasma membrane" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;IDA

TIGR_CMR|CPS_0157 CPS_0157 "signal recognition particle-docking protein FtsY" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 131/305 (42%), Positives = 189/305 (61%)

Query:     2 KINWITRLKESLSKTACNLKSLIVN----KKIDKNLYNELESDLLKADVGFETTQFLLNE 57
             K+ +  RLK+ LSKT  NL   +++    K+ID +L+ ELE+ LL ADVG ETT  ++  
Sbjct:   177 KLGFFARLKQGLSKTRQNLGGGLIDLFRGKQIDDDLFEELETHLLLADVGVETTMKIIES 236

Query:    58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
             L +    K+L +                + + +PL+  +   PFVI++VGVNGVGKTTTI
Sbjct:   237 LTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVGKTTTI 296

Query:   117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXX 176
             GKLA  F+ + KSV+LAA DTFRAAA EQL + G+ N++PVI++    D           
Sbjct:   297 GKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDAISA 356

Query:   177 XQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQ 236
              + +  DI+I DT+GRL  ++HLM EL              P+E+ L +D  TGQN LSQ
Sbjct:   357 AKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNALSQ 416

Query:   237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
              K F + + +TGL ITKLDGT KGG++ A+A K+SIP+ ++G+GE I+DL+ FN+ DF++
Sbjct:   417 TKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNSDDFID 476

Query:   297 ALLNQ 301
             AL ++
Sbjct:   477 ALFSK 481

GO:0000910 "cytokinesis" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

TIGR_CMR|CBU_1903 CBU_1903 "signal recognition particle-docking protein FtsY" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 133/305 (43%), Positives = 185/305 (60%)

Query:     2 KINWITRLKESLSKTACNL----KSLIVNKK-IDKNLYNELESDLLKADVGFETTQFLLN 56
             K  W+ RL ESL +T   L     +L++ KK ID +L  ELE  LL AD+G E TQ +LN
Sbjct:    21 KKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIEATQSILN 80

Query:    57 ELKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTI 116
              L + +  K L + +              +  +K L      PFVI+ VGVNGVGKTTTI
Sbjct:    81 NLSQQVARKSLSDPKALIDALKIELLNILEPCQKHLEIS-ASPFVILTVGVNGVGKTTTI 139

Query:   117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXX 176
              KLA++++ +KK V+LAA DTFRAAA EQL   G+ N+ PVI+++   D           
Sbjct:   140 AKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSASVIYDAMEA 199

Query:   177 XQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQ 236
                ++ D++I DT+GRL TQSHLM EL            + P+E  L++D  TGQN ++Q
Sbjct:   200 ATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAGTGQNAINQ 259

Query:   237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
              ++F + + +TG+ ITKLDGT KGG++ AIAKK  +P+ FIG+GEKIEDL+ FNA +F+ 
Sbjct:   260 AEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKPFNAKEFIA 319

Query:   297 ALLNQ 301
             AL  +
Sbjct:   320 ALFKE 324

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|SO_4586 SO_4586 "signal recognition particle-docking protein FtsY" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 130/305 (42%), Positives = 186/305 (60%)

Query:     2 KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
             K ++  RLK  L +T+ N+ S    L   KKID  L+ ELE  LL ADVG ETT  L+  
Sbjct:   201 KESFFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTGRLIKS 260

Query:    58 LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCK-PFVIMIVGVNGVGKTTTI 116
             L +    K+L + E                +  PL+ +    PFVI++VGVNGVGKTTTI
Sbjct:   261 LTEHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPFVILMVGVNGVGKTTTI 320

Query:   117 GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXX 176
             GKLA  ++++ KSV+LAA DTFRAAA EQL + G+ N++PV+++    D           
Sbjct:   321 GKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQA 380

Query:   177 XQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQ 236
              + +  D++I DT+GRL  +SHLM EL            E P+E+ L +D +TGQN +SQ
Sbjct:   381 AKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQ 440

Query:   237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVN 296
              + F + + +TG+ I+KLDGT KGG++ AIA K+ IPL +IG+GE+I+DL+ FN+ +F++
Sbjct:   441 AQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEFID 500

Query:   297 ALLNQ 301
             AL  Q
Sbjct:   501 ALFTQ 505

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|VC_0147 VC_0147 "signal recognition particle-docking protein FtsY" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 130/303 (42%), Positives = 183/303 (60%)

Query:     4 NWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK 59
             ++  RLK SLS+T  N+ +    L   KKID +L+ ELE  LL ADVG +TT  ++  L 
Sbjct:    87 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146

Query:    60 KIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFK-KCKPFVIMIVGVNGVGKTTTIGK 118
                  ++L + E                +E+PL+   + KP+VI++VGVNGVGKTTTIGK
Sbjct:   147 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206

Query:   119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQ 178
             LA  F+ + K V+LAA DTFRAAA EQL + G+ N VPVI++    D            +
Sbjct:   207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266

Query:   179 KKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIK 238
              +  D+VI DT+GRL  +S+LM EL              P+EI L +D  TGQN +SQ K
Sbjct:   267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326

Query:   239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
              FS +  ITG+ +TKLDGT KGG++ AIA ++ IP+ +IG+GEKI+DL+ F   +F++AL
Sbjct:   327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDAL 386

Query:   299 LNQ 301
              ++
Sbjct:   387 FSR 389

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|CHY_1442 CHY_1442 "signal recognition particle-docking protein FtsY" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 128/302 (42%), Positives = 185/302 (61%)

Query:     3 INWITRLKESLSKTACNLKSLI--VNKK--IDKNLYNELESDLLKADVGFETTQFLLNEL 58
             + +  RLKESL KT  N+ + I  V KK  +D+ L+ +LE  L++ DVG + +  L+ +L
Sbjct:     1 MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKL 60

Query:    59 KKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGK 118
             +K    +++ ++EQ             ++ +  L      P VI++VGVNGVGKTTTIGK
Sbjct:    61 RKTARERRITDSEQLKQVLKEEILKILEAGDNKLKNVPRTPLVILVVGVNGVGKTTTIGK 120

Query:   119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQ 178
             LA YFK++ K VLLAA DTFRAAA EQL I G     PVI +K+ +DP            
Sbjct:   121 LAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAAI 180

Query:   179 KKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIK 238
              +  D++I+DT+GRL T+++LM EL              P E+ L++D  TGQN LSQ++
Sbjct:   181 ARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQVE 240

Query:   239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
              F+K L +TGL++TKLDGT KGG++  I   Y IP+ FIG+GEK++DL+ F+  +FV AL
Sbjct:   241 YFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEAL 300

Query:   299 LN 300
              +
Sbjct:   301 FS 302

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|GSU_1132 GSU_1132 "signal recognition particle-docking protein FtsY" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 126/296 (42%), Positives = 168/296 (56%)

Query:     8 RLKESLSKTACNLKS----LIVNKK-IDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
             RLK+ LSKT  +L      L++ KK ID +   ELE  L+ AD+G +TT  L+  L++ +
Sbjct:    53 RLKQGLSKTRDSLVGRIDRLVLGKKEIDADTLEELEEILITADLGVQTTVELIRGLEQRL 112

Query:    63 YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
                +L + E                    L      PFVIM++GVNGVGKTTTIGKLA  
Sbjct:   113 SRNELKDGEALREALKEDIHGRLARDAHQLDVTGASPFVIMVIGVNGVGKTTTIGKLAAR 172

Query:   123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
             F  + K V+LAA DTFRAAA EQL I G+   V VI  K+  DP             +  
Sbjct:   173 FTAQGKKVILAAGDTFRAAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGA 232

Query:   183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
             DI+IVDT+GRL T+ +LM EL              P+E  L++D  TGQN LSQ K F +
Sbjct:   233 DILIVDTAGRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKE 292

Query:   243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
               ++TG+ +TKLDGT KGGI+ AI  ++ IP+ +IG+GE I+DL+ F+   FV AL
Sbjct:   293 AAQVTGIALTKLDGTAKGGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQFVEAL 348

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|ECH_1111 ECH_1111 "signal recognition particle-docking protein FtsY" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 116/303 (38%), Positives = 170/303 (56%)

Query:     5 WITRLKESLSKTACNL-----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK 59
             + + +K+ L KT+  L     K     KK+D+    EL+  L+ ADVG++    L  +L 
Sbjct:     9 FFSNIKKGLFKTSSKLSDGIKKIFSSGKKVDQETLEELKELLITADVGYDNASLLTQKLA 68

Query:    60 KIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKL 119
                +++   NT +               +EKPL     KP VIM+ G NG GKTTTIGKL
Sbjct:    69 STKFNEMDDNTVKQKLAESIENILL--QVEKPLSINN-KPHVIMVCGTNGNGKTTTIGKL 125

Query:   120 ANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQK 179
             A+ FK   K VL+AACDTFRAAA EQL++  +  + PV++  +  D              
Sbjct:   126 AHRFKNTGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQALN 185

Query:   180 KNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKE 239
             + TD++++DT+GRL    +LM EL              P+++ LI+D  TGQN ++Q+  
Sbjct:   186 EQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQVDA 245

Query:   240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
             F + + I+GLIITKLDGT KGG++  IA+KY + ++ IGIGE +E LQ F+A +F   LL
Sbjct:   246 FLQFVNISGLIITKLDGTAKGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAAGLL 305

Query:   300 NQN 302
             + N
Sbjct:   306 DIN 308

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|BA_3985 BA_3985 "signal recognition particle-docking protein FtsY" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 112/299 (37%), Positives = 168/299 (56%)

Query:     8 RLKESLSKT----ACNLKSLIVN-KKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
             + K+ L KT    A  +  L+   +K+D++ + ELE  L+ ADVG  T   L+++LK+ +
Sbjct:    21 KFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVSTVMELIDQLKEEV 80

Query:    63 YSKKLFNTEQXXXXXXXXXXXXXKS---LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKL 119
               + + +  +             K        +  +K    V++ VGVNGVGKTTTIGK+
Sbjct:    81 QRRNIQDPREVQAVISEKLIEIYKGDSDFTNEVNMQKDGLTVVLFVGVNGVGKTTTIGKM 140

Query:   120 ANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQK 179
             A+ FK   KSVLLAA DTFRA A EQL + G    V VI +   +DP           + 
Sbjct:   141 AHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKA 200

Query:   180 KNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKE 239
             +N D+++ DT+GRL  + +LM+EL              P+E+ L+ID  TGQN LSQ K 
Sbjct:   201 RNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKT 260

Query:   240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
             F +   +TG+++TKLDGT KGGI+ AI  +  +P+ F+G+GE+++DLQ F+   +V  L
Sbjct:   261 FREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQYVYGL 319

GO:0003924 "GTPase activity" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|SPO_1339 SPO_1339 "signal recognition particle-docking protein FtsY" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 101/275 (36%), Positives = 163/275 (59%)

Query:    24 IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXXXXX 83
             +V + +D ++  +LE  L+ AD+G +T   +   + +    +KL +T++           
Sbjct:   111 VVRRTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRIGRKL-STQEIKALLAQEITR 169

Query:    84 XXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY 143
               + + +P+     +P V+++VGVNG GKTTTIGKLA+ FK   K V++AA DTFRAAA 
Sbjct:   170 IMEPVARPMPLYPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAV 229

Query:   144 EQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMREL 203
             EQL + G    VPV++  + +DP           Q+   D++++DT+GRL  ++ LM EL
Sbjct:   230 EQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEEL 289

Query:   204 XXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGIL 263
                           P+   L++D  TGQN +SQ++ F K+  ++GL++TKLDGT KGGIL
Sbjct:   290 AKIVRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGIL 349

Query:   264 AAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
              ++A ++ +P++ IG+GE+I+DL  F+  DF  AL
Sbjct:   350 VSLADRFGLPIHAIGVGEQIDDLAPFDPEDFAAAL 384

GO:0003924 "GTPase activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0048501 "signal recognition particle, plasma membrane targeting" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8G736	FTSY_BIFLO	No assigned EC number	0.3941	0.9536	0.6857	yes	N/A
O33010	FTSY_MYCLE	No assigned EC number	0.3576	0.9701	0.6813	yes	N/A
Q9RS67	FTSY_DEIRA	No assigned EC number	0.3904	0.9735	0.9274	yes	N/A
O25458	FTSY_HELPY	No assigned EC number	0.3919	0.8377	0.8634	yes	N/A
P66843	FTSY_MYCBO	No assigned EC number	0.3613	0.8907	0.6374	yes	N/A
O80842	CFTSY_ARATH	No assigned EC number	0.4160	0.8841	0.7295	yes	N/A
P57137	FTSY_BUCAI	No assigned EC number	0.4729	0.9172	0.7328	yes	N/A
P57011	FTSY_NEIMB	No assigned EC number	0.4835	0.9867	0.7078	yes	N/A
P57010	FTSY_NEIMA	No assigned EC number	0.4835	0.9867	0.7078	yes	N/A
Q9ZL80	FTSY_HELPJ	No assigned EC number	0.3956	0.8377	0.8634	yes	N/A
Q92GB8	FTSY_RICCN	No assigned EC number	0.4086	0.9801	0.9768	yes	N/A
P44870	FTSY_HAEIN	No assigned EC number	0.4551	0.9801	0.7149	yes	N/A
P66842	FTSY_MYCTU	No assigned EC number	0.3613	0.8907	0.6374	yes	N/A
Q68VX4	FTSY_RICTY	No assigned EC number	0.4222	0.9635	0.9603	yes	N/A
D3UJA7	FTSY_HELM1	No assigned EC number	0.3952	0.8940	0.9246	yes	N/A
Q1RKK5	FTSY_RICBR	No assigned EC number	0.4006	0.9834	0.9801	yes	N/A
Q9Z6T7	FTSY_CHLPN	No assigned EC number	0.3816	0.9172	0.9551	yes	N/A
P27414	FTSY_SULAC	No assigned EC number	0.3633	0.8708	0.7127	yes	N/A
O29633	SRP54_ARCFU	No assigned EC number	0.3648	0.9172	0.6397	yes	N/A
O05948	FTSY_RICPR	No assigned EC number	0.4256	0.9635	0.9603	yes	N/A
Q2NE47	SRP54_METST	No assigned EC number	0.3411	0.9337	0.6351	yes	N/A
P14929	FTSY_NEIGO	No assigned EC number	0.4835	0.9834	0.7139	yes	N/A
Q4UK46	FTSY_RICFE	No assigned EC number	0.4117	0.9635	0.9603	yes	N/A
Q6MTB9	FTSY_MYCMS	No assigned EC number	0.3809	0.8675	0.655	yes	N/A
Q9HJ93	FTSY_THEAC	No assigned EC number	0.3465	0.8774	0.9201	yes	N/A
A9CHH2	FTSY_AGRT5	No assigned EC number	0.4092	0.9834	0.6213	yes	N/A
O67066	FTSY_AQUAE	No assigned EC number	0.4242	0.9768	0.6399	yes	N/A
Q57565	SRP54_METJA	No assigned EC number	0.3585	0.9503	0.6363	yes	N/A
P47539	FTSY_MYCGE	No assigned EC number	0.3484	0.9337	0.8150	yes	N/A
P51835	FTSY_BACSU	No assigned EC number	0.4600	0.8609	0.7902	yes	N/A
Q8KA77	FTSY_BUCAP	No assigned EC number	0.4602	0.9867	0.8490	yes	N/A
Q89B28	FTSY_BUCBP	No assigned EC number	0.4612	0.8973	0.6826	yes	N/A
O32861	FTSY_MYCHP	No assigned EC number	0.3916	0.8509	0.7321	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
PRK10416	318	PRK10416, PRK10416, signal recognition particle-do	1e-146
COG0552	340	COG0552, FtsY, Signal recognition particle GTPase	1e-118
TIGR00064	272	TIGR00064, ftsY, signal recognition particle-docki	1e-109
pfam00448	196	pfam00448, SRP54, SRP54-type protein, GTPase domai	4e-90
smart00962	197	smart00962, SRP54, SRP54-type protein, GTPase doma	7e-90
COG0541	451	COG0541, Ffh, Signal recognition particle GTPase [	8e-78
cd03115	173	cd03115, SRP, The signal recognition particle (SRP	9e-76
PRK14974	336	PRK14974, PRK14974, cell division protein FtsY; Pr	2e-69
PRK00771	437	PRK00771, PRK00771, signal recognition particle pr	9e-66
PRK10867	433	PRK10867, PRK10867, signal recognition particle pr	4e-65
TIGR00959	428	TIGR00959, ffh, signal recognition particle protei	1e-63
TIGR01425	429	TIGR01425, SRP54_euk, signal recognition particle	8e-52
PRK05703	424	PRK05703, flhF, flagellar biosynthesis regulator F	2e-26
COG1419	407	COG1419, FlhF, Flagellar GTP-binding protein [Cell	2e-24
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	4e-18
TIGR03499	283	TIGR03499, FlhF, flagellar biosynthetic protein Fl	4e-16
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-12
PRK14722	374	PRK14722, flhF, flagellar biosynthesis regulator F	1e-12
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	2e-12
PRK12726	407	PRK12726, PRK12726, flagellar biosynthesis regulat	2e-11
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-11
PRK14721	420	PRK14721, flhF, flagellar biosynthesis regulator F	3e-10
PRK06731	270	PRK06731, flhF, flagellar biosynthesis regulator F	5e-10
PRK11889	436	PRK11889, flhF, flagellar biosynthesis regulator F	2e-09
PRK12723	388	PRK12723, PRK12723, flagellar biosynthesis regulat	1e-07
smart00963	77	smart00963, SRP54_N, SRP54-type protein, helical b	2e-07
pfam02881	77	pfam02881, SRP54_N, SRP54-type protein, helical bu	3e-07
PRK12724	432	PRK12724, PRK12724, flagellar biosynthesis regulat	5e-07
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	2e-05
cd01672	200	cd01672, TMPK, Thymidine monophosphate kinase (TMP	0.003

>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional

 Score =  412 bits (1063), Expect = e-146
 Identities = 155/303 (51%), Positives = 220/303 (72%), Gaps = 4/303 (1%)

Query: 2   KINWITRLKESLSKTACN----LKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K  W  RLK+ LSKT  N    +  L   KKID++L  ELE  L++ADVG ETT+ ++ E
Sbjct: 13  KEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEE 72

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
           L++ +  K L + E+++ +L   L  +L+ +EKPL  ++ KPFVI++VGVNGVGKTTTIG
Sbjct: 73  LRERVKRKNLKDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIG 132

Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
           KLA+ +K + K VLLAA DTFRAAA EQL + G+   VPVI++K+  DPA++AF+AI  A
Sbjct: 133 KLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192

Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
           + +  D++I+DT+GRL  +++LM ELKKIK+VI+K   + P+E+ L++D  TGQN LSQ 
Sbjct: 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252

Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
           K F + + +TG+I+TKLDGT KGG++ AIA +  IP+ FIG+GE I+DLQ F+A +FV+A
Sbjct: 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDA 312

Query: 298 LLN 300
           LL 
Sbjct: 313 LLG 315

Length = 318

>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular trafficking and secretion]

 Score =  343 bits (882), Expect = e-118
 Identities = 153/311 (49%), Positives = 209/311 (67%), Gaps = 12/311 (3%)

Query: 2   KINWITRLKESLSKTACNLKSLIVNK-------KIDKNLYNELESDLLKADVGFETTQFL 54
           K  W  RLK+ LSKT  N    I          K+D++L  ELE  L++ADVG ET + +
Sbjct: 30  KEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEI 89

Query: 55  LNELKK-IIYSKKLFNTEQVRNVLHNLLVNLLKSLEKP----LIFKKCKPFVIMIVGVNG 109
           + EL+K     KK+ + E V+  L   L+ +L+ ++K      I K+ KPFVI+ VGVNG
Sbjct: 90  IEELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNG 149

Query: 110 VGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAI 169
           VGKTTTI KLA Y K++ KSVLLAA DTFRAAA EQL + G+   VPVIS K+  DPAA+
Sbjct: 150 VGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAV 209

Query: 170 AFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT 229
           AF+AI  A+ +  D+V++DT+GRL  + +LM ELKKI +VI+K   + P+EI L++D  T
Sbjct: 210 AFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269

Query: 230 GQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIF 289
           GQN LSQ K F++ + + G+I+TKLDGT KGGI+ +IA +  IP+ FIG+GE  +DL+ F
Sbjct: 270 GQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPF 329

Query: 290 NAVDFVNALLN 300
           +A  FV+ALL 
Sbjct: 330 DAEWFVDALLG 340

Length = 340

>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein FtsY

 Score =  317 bits (814), Expect = e-109
 Identities = 138/272 (50%), Positives = 191/272 (70%)

Query: 28  KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKS 87
           K D++ + ELE  LL++DVG+E  + ++  LKK +  KK+ + E ++ +L   L  +LK 
Sbjct: 1   KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKE 60

Query: 88  LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL 147
            +  LI ++ KP VI+ VGVNGVGKTTTI KLAN  KK+ KSVLLAA DTFRAAA EQL 
Sbjct: 61  TDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLE 120

Query: 148 ILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIK 207
              K   V VI +K+  DPAA+AF+AI  A+ +N D+V++DT+GRL  + +LM ELKKIK
Sbjct: 121 EWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIK 180

Query: 208 KVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIA 267
           +VI+K   + P E+ L++D  TGQN L Q K F++ + +TG+I+TKLDGT KGGI+ +IA
Sbjct: 181 RVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIA 240

Query: 268 KKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            +  +P+ FIG+GEKI+DL  F+A  FV AL 
Sbjct: 241 YELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein [Protein fate, Protein and peptide secretion and trafficking]. Length = 272

>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain

 Score =  265 bits (681), Expect = 4e-90
 Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 6/202 (2%)

Query: 99  PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           P VI++VG+ G GKTTTI KLA Y KK+ K VLL A DTFRAAA EQL  L +   VPV 
Sbjct: 1   PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVF 60

Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELP 218
                +DPAA+AF+A+  A+ +N D+V+VDT+GRL    +LM ELKKIK+VI       P
Sbjct: 61  GSGTGSDPAAVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIA------P 114

Query: 219 YEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
            E+ L++D  TGQN L+Q K F++ + ITG+I+TKLDG  KGG   +IA +   P+ FIG
Sbjct: 115 DEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKGGAALSIAAETGKPIKFIG 174

Query: 279 IGEKIEDLQIFNAVDFVNALLN 300
           +GEKI+DL+ F+   FV+ LL 
Sbjct: 175 VGEKIDDLEPFDPERFVSRLLG 196

This family includes relatives of the G-domain of the SRP54 family of proteins. Length = 196

>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain

 Score =  265 bits (680), Expect = 7e-90
 Identities = 96/202 (47%), Positives = 133/202 (65%), Gaps = 7/202 (3%)

Query: 99  PFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
           P VI++VG NGVGKTTTI KLA   K +  K VLL A DTFRAAA EQL    +   V  
Sbjct: 1   PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVP 60

Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
           ++  +  DP A+A +A+ +A+ +  D+V++DT+GRL    +LM ELKKIK+VI+      
Sbjct: 61  VAGGEGADPVAVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------ 114

Query: 218 PYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI 277
           P E+ L+ D  TGQ+ + Q K F++ L +TG+I+TKLDGT KGG   +IA +  +P+ FI
Sbjct: 115 PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALSIAAETGLPIKFI 174

Query: 278 GIGEKIEDLQIFNAVDFVNALL 299
           G GEK+ DL+ F+   FV+ LL
Sbjct: 175 GTGEKVPDLEPFDPERFVSRLL 196

This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins. Length = 197

>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular trafficking and secretion]

 Score =  243 bits (623), Expect = 8e-78
 Identities = 114/299 (38%), Positives = 159/299 (53%), Gaps = 17/299 (5%)

Query: 9   LKESLSKTACNLKSLIVNKKIDKNLYNELESD----LLKADVGFETTQFLLNELKKIIY- 63
           L + LS     LK L    +I +    E   +    LL+ADV  +  +  +  +K+    
Sbjct: 5   LSDRLSNA---LKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALG 61

Query: 64  ---SKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
               K L   +Q   +++  LV LL      L   K  P VI++VG+ G GKTTT GKLA
Sbjct: 62  EEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLA 121

Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKK 180
            Y KK+ K VLL A DT+R AA EQL  L +   VP        DP  IA  A+  A+++
Sbjct: 122 KYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEE 181

Query: 181 NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEF 240
             D+VIVDT+GRL     LM ELK+IK+VI       P E  L++D   GQ+ ++  K F
Sbjct: 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVIN------PDETLLVVDAMIGQDAVNTAKAF 235

Query: 241 SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
           ++ L ITG+I+TKLDG  +GG   +       P+ FIG GEKI+DL+ F+   F + +L
Sbjct: 236 NEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRIL 294

Length = 451

>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

 Score =  228 bits (585), Expect = 9e-76
 Identities = 89/179 (49%), Positives = 120/179 (67%), Gaps = 6/179 (3%)

Query: 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS 159
            VI++VG+ GVGKTTT  KLA Y KK+ K VLL A DT+R AA EQL +LG+   VPV  
Sbjct: 1   TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE 60

Query: 160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPY 219
           E +  DP +IA  AI  A+++N D+VIVDT+GRL    +LM ELKKIK+V++      P 
Sbjct: 61  EGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVK------PD 114

Query: 220 EIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
           E+ L++D  TGQ+ ++Q K F++ L ITG+I+TKLDG  +GG   +I      P+ FIG
Sbjct: 115 EVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSIRAVTGKPIKFIG 173

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. Length = 173

>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional

 Score =  218 bits (557), Expect = 2e-69
 Identities = 113/275 (41%), Positives = 164/275 (59%), Gaps = 20/275 (7%)

Query: 36  ELESDLLKADVGFETTQFLLNELKKIIYSKK---LFNTEQ-VRNVLHNLLVNLLKSLEKP 91
           ELE +LL++DV  E  + +L  LK+ +  KK     + E+ V+N L   L+ +L S+   
Sbjct: 69  ELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVL-SVGDL 127

Query: 92  L-----IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
                 I  K KP VI+ VGVNG GKTTTI KLA Y KK   SV++AA DTFRA A EQL
Sbjct: 128 FDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL 187

Query: 147 LILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKI 206
               +   V VI  K   DPAA+A++AI  A+ +  D+V++DT+GR+ T ++LM ELKKI
Sbjct: 188 EEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247

Query: 207 KKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI 266
            +V +      P  +  + D   G + + Q +EF++ + I G+I+TK+D   KGG  AA+
Sbjct: 248 VRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGG--AAL 299

Query: 267 AKKYSI--PLYFIGIGEKIEDLQIFNAVDFVNALL 299
           +  Y I  P+ F+G+G+  +DL  F+   FV+ LL
Sbjct: 300 SIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLL 334

Length = 336

>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54; Provisional

 Score =  211 bits (541), Expect = 9e-66
 Identities = 115/300 (38%), Positives = 165/300 (55%), Gaps = 22/300 (7%)

Query: 9   LKESLSKTACNLKSLIVNKKIDKNLYNELESD----LLKADVGFETTQFLLNELKKIIYS 64
           L ESL      LK L    +ID+    E+  D    LL+ADV  +  + L   +K+    
Sbjct: 1   LGESLRDA---LKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALE 57

Query: 65  KK----LFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
           ++    L   E V  +++  LV LL   E   +    KP  IM+VG+ G GKTTT  KLA
Sbjct: 58  EEPPKGLTPREHVIKIVYEELVKLLGE-ETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLA 116

Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKK 180
            YFKK+   V L A DT+R AAY+QL  L +   VP   +    D   IA     + + K
Sbjct: 117 RYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG--LEKFK 174

Query: 181 NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEF 240
             D++IVDT+GR + +  L+ E+K+IK+ ++      P E+ L+ID   GQ   +Q K F
Sbjct: 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAF 228

Query: 241 SKILRITGLIITKLDGTTKGG-ILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            + + I G+IITKLDGT KGG  L+A+A+  + P+ FIG GEKI+DL+ F+   F++ LL
Sbjct: 229 HEAVGIGGIIITKLDGTAKGGGALSAVAETGA-PIKFIGTGEKIDDLERFDPDRFISRLL 287

Length = 437

>gnl|CDD|236780 PRK10867, PRK10867, signal recognition particle protein; Provisional

 Score =  210 bits (537), Expect = 4e-65
 Identities = 107/258 (41%), Positives = 148/258 (57%), Gaps = 15/258 (5%)

Query: 41  LLKADVGFETTQFLLNELK-KII---YSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKK 96
           LL+ADV     +  +  +K K +     K L   +QV  ++++ LV +L      L    
Sbjct: 38  LLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGGENSELNLAA 97

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV 155
             P VIM+VG+ G GKTTT GKLA Y KK+ KK VLL A D +R AA EQL  LG+   V
Sbjct: 98  KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV 157

Query: 156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF 215
           PV       DP  IA  A+  A++   D+VIVDT+GRL     LM ELK IK  +     
Sbjct: 158 PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVN---- 213

Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYS--IP 273
             P EI L++D  TGQ+ ++  K F++ L +TG+I+TKLDG  +GG  AA++ +     P
Sbjct: 214 --PDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGDARGG--AALSIRAVTGKP 269

Query: 274 LYFIGIGEKIEDLQIFNA 291
           + FIG GEK++DL+ F+ 
Sbjct: 270 IKFIGTGEKLDDLEPFHP 287

Length = 433

>gnl|CDD|233210 TIGR00959, ffh, signal recognition particle protein

 Score =  205 bits (525), Expect = 1e-63
 Identities = 101/256 (39%), Positives = 151/256 (58%), Gaps = 11/256 (4%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           LL+ADV  +  +  + ++K+    +++  +    +Q   ++H  LV +L      L   K
Sbjct: 37  LLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAK 96

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV 155
             P VI++VG+ G GKTTT GKLA Y KK+  K VLL ACD +R AA EQL +LG+   V
Sbjct: 97  KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV 156

Query: 156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF 215
           PV +  K   P  IA  A+  A++   D+VIVDT+GRL     LM EL  IK+++     
Sbjct: 157 PVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILN---- 212

Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLY 275
             P EI L++D  TGQ+ ++  K F++ L +TG+++TKLDG  +GG   ++      P+ 
Sbjct: 213 --PDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIK 270

Query: 276 FIGIGEKIEDLQIFNA 291
           FIG+GEKI+DL+ F+ 
Sbjct: 271 FIGVGEKIDDLEPFHP 286

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle [Protein fate, Protein and peptide secretion and trafficking]. Length = 428

>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54

 Score =  175 bits (445), Expect = 8e-52
 Identities = 95/283 (33%), Positives = 152/283 (53%), Gaps = 12/283 (4%)

Query: 22  SLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL- 80
           + ++++++   +  E+ + LL++DV  +  + L   +KK I  +++ +    R ++ +  
Sbjct: 19  ATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAV 78

Query: 81  ---LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT 137
              L NL+    +    KK K  VIM VG+ G GKTTT  KLA Y++++     L   DT
Sbjct: 79  FKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138

Query: 138 FRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQS 197
           FRA A++QL        +P       +DP  IA   +   +K+N DI+IVDTSGR   + 
Sbjct: 139 FRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQED 198

Query: 198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGT 257
            L  E+ ++ + I+      P  I  ++DG+ GQ   +Q K F   + +  +IITKLDG 
Sbjct: 199 SLFEEMLQVAEAIQ------PDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGH 252

Query: 258 TK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            K GG L+A+A   S P+ FIG GE I+D +IF    F++ LL
Sbjct: 253 AKGGGALSAVAATKS-PIIFIGTGEHIDDFEIFKTQPFISKLL 294

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429

>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score =  106 bits (268), Expect = 2e-26
 Identities = 75/270 (27%), Positives = 133/270 (49%), Gaps = 25/270 (9%)

Query: 36  ELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFK 95
           EL   L ++ +  E  + LL  L + +  ++          L  LL N++    + ++ +
Sbjct: 165 ELYKRLKRSGLSPEIAEKLLKLLLEHMPPRE----RTAWRYLLELLANMIPVRVEDILKQ 220

Query: 96  KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYN 153
                V+ +VG  GVGKTTT+ KLA  +     KK V L   DT+R  A EQL    K  
Sbjct: 221 GG---VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM 277

Query: 154 DVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKK 213
            +PV       + A        + Q ++ D++++DT+GR        R ++++K +IE  
Sbjct: 278 GIPVEVVYDPKELAKA------LEQLRDCDVILIDTAGR---SQRDKRLIEELKALIEFS 328

Query: 214 IFELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTK-GGILAAIAKKYS 271
               P +++L++   T    L  I K FS++  + GLI TKLD T+  G IL ++  +  
Sbjct: 329 --GEPIDVYLVLSATTKYEDLKDIYKHFSRL-PLDGLIFTKLDETSSLGSIL-SLLIESG 384

Query: 272 IPLYFIGIGEKI-EDLQIFNAVDFVNALLN 300
           +P+ ++  G+++ +D+++ N  + V  LL 
Sbjct: 385 LPISYLTNGQRVPDDIKVANPEELVRLLLG 414

Length = 424

>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]

 Score =  101 bits (254), Expect = 2e-24
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 24/250 (9%)

Query: 52  QFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVG 111
           + L   L+  I   K  + E +R      L  LL SL + LI ++ +  VI +VG  GVG
Sbjct: 159 ELLRAGLELEILDMKDESYEDLR-YFSEKLRKLLLSLIENLIVEQKR--VIALVGPTGVG 215

Query: 112 KTTTIGKLANYFK--KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAI 169
           KTTT+ KLA  +   K+KK V +   DT+R  A EQL        VP+            
Sbjct: 216 KTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--------VVY 267

Query: 170 AFNAINIA--QKKNTDIVIVDTSGRLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLIID 226
           +   +  A    ++ D+++VDT+GR    S   +E ++++K++I+        E++L++ 
Sbjct: 268 SPKELAEAIEALRDCDVILVDTAGR----SQYDKEKIEELKELID---VSHSIEVYLVLS 320

Query: 227 GNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-ED 285
             T    L +I +   +  I GLI TKLD TT  G L ++  +  +P+ ++  G+++ ED
Sbjct: 321 ATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPED 380

Query: 286 LQIFNAVDFV 295
           + + N    V
Sbjct: 381 IVVANPDYLV 390

Length = 407

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 84.5 bits (209), Expect = 4e-18
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 37/215 (17%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           V+ +VG  GVGKTTT  KLA     R     + L   D+FR  A EQL I G+   VPV 
Sbjct: 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH 246

Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG------RLSTQSHLMRELKKIKKVIEK 212
           + K   D A + F    +A   +  +V++DT G       +S Q  ++  + +       
Sbjct: 247 AVK---DAADLRF---ALAALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGR------- 293

Query: 213 KIFELPYEIFLIIDGNTGQNTLSQIKEFSKILR------ITGLIITKLDGTTKGGILAAI 266
                P    L+++  +  +TL+   E     R      + G IITKLD  T  G     
Sbjct: 294 -----PVRRLLLLNAASHGDTLN---EVVHAYRHGAGEDVDGCIITKLDEATHLGPALDT 345

Query: 267 AKKYSIPLYFIGIGEKI-EDLQIFNAVDFVN-ALL 299
             ++ +P++++  G+K+ E L++  A + V+ A  
Sbjct: 346 VIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA 380

Length = 767

>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 36  ELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSL-EKPLIF 94
           +L   LL+A V  E  + LL +L +        + E     L   L  +L    E+  I 
Sbjct: 139 KLLERLLEAGVSEELARELLEKLPE------DLDAEDAWRWLREALEGMLPVKPEEDPIL 192

Query: 95  KKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLILGKY 152
           ++    VI +VG  GVGKTTT+ KLA  F  +  KK V L   DT+R  A EQL    + 
Sbjct: 193 ER--GGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAEI 250

Query: 153 NDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG 191
             VPV   K   DP  +   A  + + ++ D++++DT+G
Sbjct: 251 LGVPV---KVARDPKEL---AEALDRLRDKDLILIDTAG 283

[Cellular processes, Chemotaxis and motility]. Length = 283

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 98  KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
              VI+IVG  G GKTT    LA         V+    +       +QLL       + V
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIV 54

Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
             +K           A+ +A+K   D++I+D    L         L   +  +   +   
Sbjct: 55  GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSE 114

Query: 218 PYEIFLII 225
                ++ 
Sbjct: 115 KNLTVILT 122

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 25/197 (12%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           V  ++G  GVGKTTT  KLA     R     V L   D++R   +EQL I GK   VPV 
Sbjct: 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 198

Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELP 218
           + K   D        + +A+ +N  +V++DT G       +  ++  +         + P
Sbjct: 199 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGA------DTP 246

Query: 219 YEIFLIIDGNTGQNTLSQIKEFSK---------ILRITGLIITKLD-GTTKGGILAAIAK 268
            +  L+++  +  +TL+++ +  +         +  + G I+TKLD  +  GG+L  + +
Sbjct: 247 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 306

Query: 269 KYSIPLYFIGIGEKIED 285
            Y +P++++  G+K+ +
Sbjct: 307 -YKLPVHYVSTGQKVPE 322

Length = 374

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 67.3 bits (164), Expect = 2e-12
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 30/205 (14%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           VI +VG  G GKTTTI KLA  F  +   + V L   DT R    EQL   G+   + V 
Sbjct: 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 411

Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG------RLSTQSHLMRELKKIKKVIEK 212
                     +      + + ++  +V++DT+G       L+ Q + +R  +++  +   
Sbjct: 412 EADSAESLLDL------LERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSL--- 462

Query: 213 KIFELPYEIFLIIDGNTGQNTLSQ-IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYS 271
                     L++  N   + L + ++ F+   +  G+++TKLD T + G   ++   + 
Sbjct: 463 ----------LVLPANAHFSDLDEVVRRFAHA-KPQGVVLTKLDETGRFGSALSVVVDHQ 511

Query: 272 IPLYFIGIGEKI-EDLQIFNAVDFV 295
           +P+ ++  G+++ +DL   NA   V
Sbjct: 512 MPITWVTDGQRVPDDLHRANAASLV 536

Length = 559

>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF; Provisional

 Score = 64.0 bits (155), Expect = 2e-11
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
           +I ++G  GVGKTTT+ KL     K+ ++V     DTFR+ A EQ        DV +I  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA 267

Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYE 220
              T PA +      +      D +++DT GR       + E+     V+   +      
Sbjct: 268 ---TSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDL-----T 319

Query: 221 IFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIG 280
            F    G    + ++ + + ++I  I G IITK+D TT+ G L  + ++ ++P+ ++  G
Sbjct: 320 CFTFSSGMKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 281 EKIED 285
           + I +
Sbjct: 379 QNITE 383

Length = 407

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 43/208 (20%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           V  ++G  GVGKTTT  KLA     R     V L   D++R   +EQL I GK   VPV 
Sbjct: 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH 317

Query: 159 SEKKITDPA--AIAFNAINIAQKKNTDIVIVDTSG------RLSTQ----SHLMRELKKI 206
           + K   D A   +A + +     +N  IV++DT G       +S Q          +K++
Sbjct: 318 AVK---DAADLRLALSEL-----RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRL 369

Query: 207 KKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD-GTTKGGIL-A 264
                           L+++  +  +TL+++ +  +   + G I+TKLD   + GG L  
Sbjct: 370 ----------------LLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDV 413

Query: 265 AIAKKYSIPLYFIGIGEKI-EDLQIFNA 291
            I  +Y +PL+++  G+++ EDL + N 
Sbjct: 414 VI--RYKLPLHYVSNGQRVPEDLHLANK 439

Length = 484

>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 15/193 (7%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           V  ++G  GVGKTTT  KLA     R     V L   D++R   +EQL I GK   V V 
Sbjct: 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252

Query: 159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELP 218
           S K I D        + + + +   +V++DT G +S +  ++ E   +      ++  L 
Sbjct: 253 SIKDIADL------QLMLHELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHL- 304

Query: 219 YEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG 278
               L+++  +  +TL ++    +   I G IITK+D     GI      +  + L+++ 
Sbjct: 305 ----LLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVT 360

Query: 279 IGEKI-EDLQIFN 290
            G+K+ EDL   N
Sbjct: 361 NGQKVPEDLHEAN 373

Length = 420

>gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 58.6 bits (141), Expect = 5e-10
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 9/183 (4%)

Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK 161
           I ++G  GVGKTTT+ K+A  F  +KK+V     D  R    +QL    K     VI+  
Sbjct: 78  IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA-- 135

Query: 162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEI 221
            + D AA+        ++   D +++DT+G+    S  + E+ +    +E      P  I
Sbjct: 136 -VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYI 188

Query: 222 FLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGE 281
            L +  +     + +I    K + I G++ TK D T   G L  I    S P+  +  G+
Sbjct: 189 CLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248

Query: 282 KIE 284
            ++
Sbjct: 249 DVK 251

Length = 270

>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 9/183 (4%)

Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK 161
           I ++G  GVGKTTT+ K+A  F  +KK+V     D  R    +QL    K     VI+  
Sbjct: 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA-- 301

Query: 162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEI 221
            + D AA+        ++   D +++DT+G+    S  + E+ +    +E      P  I
Sbjct: 302 -VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYI 354

Query: 222 FLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGE 281
            L +  +     + +I    K + I G++ TK D T   G L  I    S P+  +  G+
Sbjct: 355 CLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 282 KIE 284
            ++
Sbjct: 415 DVK 417

Length = 436

>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF; Provisional

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 98  KPFVIMIVGVNGVGKTTTIGKLANYF----KKRKKSVLLAACDTFRAAAYEQLLILGKYN 153
           K  V ++VG  GVGKTTTI KLA  +      +  ++ +   D +R  A +Q+   G   
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 154 DVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKK 213
            +PV + +   D          I Q K+ D+V+VDT G+       + E+K++     + 
Sbjct: 233 GIPVKAIESFKDLKE------EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRD 286

Query: 214 IFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK-GGILAAIAKK 269
                 E  L +   T  + + +I           +I TKLD TT  G +++ I + 
Sbjct: 287 A-----EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEM 338

Length = 388

>gnl|CDD|214941 smart00963, SRP54_N, SRP54-type protein, helical bundle domain

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 20 LKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELK---KIIYSKKLFNTEQVRNV 76
          L  L + +K D+ L  ELE  LL+ADVG E  + ++  +K   K    K L   ++V+ +
Sbjct: 9  LGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVLKGLTPKQEVKKI 68

Query: 77 LHNLLVNLL 85
          L   LV +L
Sbjct: 69 LKEELVKIL 77

This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. Length = 77

>gnl|CDD|217266 pfam02881, SRP54_N, SRP54-type protein, helical bundle domain

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 9  LKESLSKTACNL----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
          LKE LSKT   L    K L + +K    L  ELE  LL+ADVG ETT+ ++  LK+++  
Sbjct: 1  LKEGLSKTRSKLGGKIKDLFLGEKKIDELLEELEEALLEADVGVETTEKIIERLKELVGR 60

Query: 65 KKLFNTEQVRNVLHNLL 81
          K L + E+++  L   L
Sbjct: 61 KGLSDPEEIKKALKEEL 77

Length = 77

>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)

Query: 101 VIMIVGVNGVGKTTTIGKL-ANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS 159
           V+  VG  G GKTT+I KL A YF    KSV L   D +R AA EQL             
Sbjct: 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL------------- 271

Query: 160 EKKITDPAAIAFNAI-NIAQKKNT------DIVIVDTSGRLSTQSHLMRELKKIKKVIEK 212
            K+  D   + F  + +I + K T      +++++DT+G        +  ++       +
Sbjct: 272 -KRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGE 330

Query: 213 KIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI 272
           K      E  L++   +  +    + +  + L    +++TKLD     G    +A  YS 
Sbjct: 331 KD---SVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSK 387

Query: 273 PLYFIGIGEKI 283
              ++ +G+++
Sbjct: 388 SFTYLSVGQEV 398

Length = 432

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA 133
           VI++ G  GVGKTT    LA    KR K VLL 
Sbjct: 1   VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
             I+  G++G GKTT I  LA   + R   V+L
Sbjct: 1   MFIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	100.0
PRK10416	318	signal recognition particle-docking protein FtsY;	100.0
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	100.0
PRK14974	336	cell division protein FtsY; Provisional	100.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	100.0
PRK10867	433	signal recognition particle protein; Provisional	100.0
TIGR00064	272	ftsY signal recognition particle-docking protein F	100.0
PRK00771	437	signal recognition particle protein Srp54; Provisi	100.0
TIGR00959	428	ffh signal recognition particle protein. This mode	100.0
KOG0780|consensus	483		100.0
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	100.0
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	100.0
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	100.0
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	100.0
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	100.0
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	100.0
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	100.0
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	100.0
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	100.0
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	100.0
KOG0781|consensus	587		100.0
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	100.0
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	100.0
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.93
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.93
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.92
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.92
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.92
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.91
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.91
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.91
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.91
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.91
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.9
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.9
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.89
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.89
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.89
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.89
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.89
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.89
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.88
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.88
cd03246	173	ABCC_Protease_Secretion This family represents the	99.88
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.88
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.88
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.88
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.88
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.88
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.88
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.88
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.88
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.88
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.88
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.87
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.87
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.87
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.87
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.87
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.87
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.87
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.87
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.87
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.87
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.87
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.87
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.87
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.87
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.87
COG4559	259	ABC-type hemin transport system, ATPase component	99.87
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.87
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.87
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.87
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.87
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.87
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.87
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.87
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.86
PRK10908	222	cell division protein FtsE; Provisional	99.86
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.86
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.86
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.86
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.86
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.86
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.86
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.86
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.86
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.86
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.86
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.86
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.86
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.86
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.86
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.86
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.86
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.86
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.86
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.86
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.85
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.85
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.85
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.85
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.85
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.85
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.85
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.85
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.85
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.85
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.85
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.85
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.85
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.85
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.85
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.85
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.85
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.85
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.85
COG1123	539	ATPase components of various ABC-type transport sy	99.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.85
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.85
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.85
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.85
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.85
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.85
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.85
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.85
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.85
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.85
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.84
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.84
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.84
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.84
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.84
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.84
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.84
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.84
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.84
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.84
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.84
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.84
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.84
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.84
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.84
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.84
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.84
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.84
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.84
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.84
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.84
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.84
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.84
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.84
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.84
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.84
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.83
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.83
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.83
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.83
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.83
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.83
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.83
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.83
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.83
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.83
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.83
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.83
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.83
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.83
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.83
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.83
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.83
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	99.83
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.83
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.83
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.83
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.83
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.83
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.83
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.82
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.82
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.82
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.82
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.82
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.82
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.82
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.82
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.82
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.82
PRK10938	490	putative molybdenum transport ATP-binding protein	99.82
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.82
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.82
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.82
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.82
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.81
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.81
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.81
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.81
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.81
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.81
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.81
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.81
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.81
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.81
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.81
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.81
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.81
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.81
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.81
COG1123	539	ATPase components of various ABC-type transport sy	99.81
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.81
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.81
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.81
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.8
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.8
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.8
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.8
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.8
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.8
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.8
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.8
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.8
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.8
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.8
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.8
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.8
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.8
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.8
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.8
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.8
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.8
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.8
KOG0058|consensus	716		99.8
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.8
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.8
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.8
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.79
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.79
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.79
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.79
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.79
COG4988	559	CydD ABC-type transport system involved in cytochr	99.79
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.79
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.79
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.79
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.79
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.79
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.79
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.79
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.78
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.78
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.78
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK11147	635	ABC transporter ATPase component; Reviewed	99.78
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.78
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.78
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.78
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.78
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.78
PRK10938	490	putative molybdenum transport ATP-binding protein	99.77
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.77
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.77
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.77
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.77
COG4987	573	CydC ABC-type transport system involved in cytochr	99.77
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.77
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.77
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.77
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.76
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.76
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.76
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.76
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.76
PRK13409	590	putative ATPase RIL; Provisional	99.76
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.76
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.76
KOG0055|consensus	1228		99.76
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.76
KOG0057|consensus	591		99.75
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.75
PRK11147	635	ABC transporter ATPase component; Reviewed	99.75
PRK13409	590	putative ATPase RIL; Provisional	99.74
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.74
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.74
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.74
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.74
PLN03211	659	ABC transporter G-25; Provisional	99.74
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.74
COG0488	530	Uup ATPase components of ABC transporters with dup	99.73
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.73
PLN03073	718	ABC transporter F family; Provisional	99.73
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.73
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.73
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.73
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.73
COG4172	534	ABC-type uncharacterized transport system, duplica	99.72
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.72
PLN03130	1622	ABC transporter C family member; Provisional	99.72
PLN03232	1495	ABC transporter C family member; Provisional	99.72
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.71
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.71
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.71
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.71
PLN03073	718	ABC transporter F family; Provisional	99.7
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.7
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.7
COG4172	534	ABC-type uncharacterized transport system, duplica	99.7
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.69
PTZ00243	1560	ABC transporter; Provisional	99.68
COG0488	530	Uup ATPase components of ABC transporters with dup	99.68
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.68
KOG0055|consensus	1228		99.67
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.66
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.66
KOG0056|consensus	790		99.66
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.66
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.63
PLN03140	1470	ABC transporter G family member; Provisional	99.63
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.63
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.62
KOG0059|consensus	885		99.61
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.61
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.61
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.6
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.6
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.6
PLN03140	1470	ABC transporter G family member; Provisional	99.59
KOG0061|consensus	613		99.57
KOG0054|consensus	1381		99.57
PLN03232	1495	ABC transporter C family member; Provisional	99.56
PTZ00243	1560	ABC transporter; Provisional	99.56
PLN03130	1622	ABC transporter C family member; Provisional	99.55
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.54
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.5
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.49
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.48
KOG0927|consensus	614		99.47
KOG0062|consensus	582		99.47
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.47
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.43
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.42
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.42
KOG0066|consensus	807		99.4
KOG2355|consensus	291		99.4
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.4
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.4
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.38
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.37
KOG0927|consensus	614		99.35
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.34
COG4178	604	ABC-type uncharacterized transport system, permeas	99.33
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.33
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.32
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.3
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.3
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.3
KOG0054|consensus	1381		99.29
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.26
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.22
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.22
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.21
KOG0065|consensus	1391		99.21
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.2
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.12
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.12
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.1
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.06
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.06
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.04
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.04
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.04
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.03
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.03
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.02
KOG0066|consensus	807		99.01
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.01
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.99
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.99
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.98
cd03114	148	ArgK-like The function of this protein family is u	98.97
KOG0060|consensus	659		98.96
smart00382	148	AAA ATPases associated with a variety of cellular	98.92
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.91
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.89
KOG0062|consensus	582		98.89
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.87
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.86
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.81
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.79
PRK13695	174	putative NTPase; Provisional	98.78
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.78
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.72
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.72
PRK06067	234	flagellar accessory protein FlaH; Validated	98.71
KOG0064|consensus	728		98.69
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.68
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.67
COG3910	233	Predicted ATPase [General function prediction only	98.66
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.6
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	98.58
PTZ00035	337	Rad51 protein; Provisional	98.58
PRK09183	259	transposase/IS protein; Provisional	98.57
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.56
KOG0063|consensus	592		98.55
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.53
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.52
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.47
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.46
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.46
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.46
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.45
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.44
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.43
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.43
cd03112	158	CobW_like The function of this protein family is u	98.41
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.4
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.4
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.4
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.39
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.39
PF02881	75	SRP54_N: SRP54-type protein, helical bundle domain	98.39
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.38
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.38
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.37
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.37
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.36
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.36
PHA02518	211	ParA-like protein; Provisional	98.35
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.34
PRK11823	446	DNA repair protein RadA; Provisional	98.33
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.33
PRK13768	253	GTPase; Provisional	98.3
KOG0065|consensus	1391		98.3
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.29
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.28
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.27

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.4e-57  Score=406.69  Aligned_cols=299  Identities=51%  Similarity=0.765  Sum_probs=274.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhh----hcC---cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-HhcCCCCCHHHH
Q psy2881           2 KINWITRLKESLSKTACNLKSLI----VNK---KIDKNLYNELESDLLKADVGFETTQFLLNELKKI-IYSKKLFNTEQV   73 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   73 (302)
                      |.+||++++.+++++++.+.+.+    ...   +++++.+++|++.|+++||+.+++.+|++.++++ ...++..+.+.+
T Consensus        30 ~~~~~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~~~~v  109 (340)
T COG0552          30 KEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKDEETV  109 (340)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence            46899999999999976666533    322   4889999999999999999999999999999995 666666789999


Q ss_pred             HHHHHHHHHHHhhccCC-Cccee---cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh
Q psy2881          74 RNVLHNLLVNLLKSLEK-PLIFK---KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL  149 (302)
Q Consensus        74 ~~~l~~~l~~~l~~~l~-~i~l~---~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~  149 (302)
                      ++.+++.+.+.+.+.-+ +....   -+++.++.++|.||+||||++.+||.+++..+.+|.+...|+||.++++|++.|
T Consensus       110 ~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w  189 (340)
T COG0552         110 KEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVW  189 (340)
T ss_pred             HHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH
Confidence            99999999999986433 11111   235889999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCC
Q psy2881         150 GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT  229 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~  229 (302)
                      +++.|++++....+.|++.++++++..|.+++.|+||+||+||.+++.++|++|+++.+..++...-.||++.+++++++
T Consensus       190 ~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt  269 (340)
T COG0552         190 GERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT  269 (340)
T ss_pred             HHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence            99999999997688999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             ChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         230 GQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       230 g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      |++.+.|++.|++..+++|+|+||+|+++++|.++++++++++||.|+|.||.++||++|++++|++.||+
T Consensus       270 Gqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~  340 (340)
T COG0552         270 GQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG  340 (340)
T ss_pred             ChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=100.00  E-value=7.3e-52  Score=379.68  Aligned_cols=300  Identities=51%  Similarity=0.802  Sum_probs=272.1

Q ss_pred             cchHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy2881           2 KINWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVL   77 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   77 (302)
                      ||+||+++++++++++    +++.++|+++.++++.+++|++.|+++||+++++++|++.+++....++..+.+.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l   92 (318)
T PRK10416         13 KEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELL   92 (318)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            5899999999999996    566788877789999999999999999999999999999999988776667888999999


Q ss_pred             HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881          78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV  157 (302)
Q Consensus        78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~  157 (302)
                      ++.+.+.+.+.-.++.+.-.+|++++|+|||||||||++++||+++.+.+++|.+.+.|++|.++.+|+..|+.+.++++
T Consensus        93 ~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~  172 (318)
T PRK10416         93 KEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV  172 (318)
T ss_pred             HHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceE
Confidence            99999998754344444446789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881         158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~  237 (302)
                      +......++...+++++..+...++|+||+|+||+.+....+|++|+++.+.........+|+.++|++++.|++.+.++
T Consensus       173 ~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a  252 (318)
T PRK10416        173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA  252 (318)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence            88777777777777888888889999999999999999999999999998765554456789999999999999999999


Q ss_pred             HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      ..|.+..+++++|+||+|+++++|.+++++..+++||.|+|+||+++||++|+|++|+++|+|.
T Consensus       253 ~~f~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~  316 (318)
T PRK10416        253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG  316 (318)
T ss_pred             HHHHhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence            9999889999999999999999999999999999999999999999999999999999999985

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=100.00  E-value=5.2e-48  Score=355.89  Aligned_cols=287  Identities=38%  Similarity=0.565  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   76 (302)
                      ||+.|.++++++.+++   .+...++|    +.+++++.+|+++||+..+++.+++.++++..+++    +.+.+.+..+
T Consensus         1 m~e~L~~~l~~~l~kl---~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKi   77 (451)
T COG0541           1 MFESLSDRLSNALKKL---RGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKI   77 (451)
T ss_pred             ChHHHHHHHHHHHHHh---hCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence            5777788777664433   34557776    56789999999999999999999999999988776    3466889999


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      +.++|.+.+..--..+++...++.++.++|-.||||||++.+||.+++..+.+|.+..+|+||++|++||+.+++..+++
T Consensus        78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~  157 (451)
T COG0541          78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP  157 (451)
T ss_pred             HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence            99999999986444566666688999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++......+|...+..++.+|.....|++|+||+|+.+.++.+|++++++.+.      +.||++.+|+|+..|++++.+
T Consensus       158 ~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~------~~P~E~llVvDam~GQdA~~~  231 (451)
T COG0541         158 FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV------INPDETLLVVDAMIGQDAVNT  231 (451)
T ss_pred             eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh------cCCCeEEEEEecccchHHHHH
Confidence            99987778899899999999999999999999999999999999999999875      579999999999999999999


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ++.|++.++++|+|+||+|+++++|.++++.+.+|.||.|+|+||+++||++|+|++|+++|||
T Consensus       232 A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG  295 (451)
T COG0541         232 AKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG  295 (451)
T ss_pred             HHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998

>PRK14974 cell division protein FtsY; Provisional

Probab=100.00  E-value=5.8e-45  Score=335.07  Aligned_cols=290  Identities=41%  Similarity=0.595  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCc---------------------------------CC----hHHHHHHHHHHHHCCCC
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKK---------------------------------ID----KNLYNELESDLLKADVG   47 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~----~~~~~~l~~~L~~~~~~   47 (302)
                      ||++||+.++++.+++......+.                                 ++    ++.+++|+..|+++||+
T Consensus         1 ~f~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Ll~~dv~   80 (336)
T PRK14974          1 MFDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLESDVA   80 (336)
T ss_pred             CchHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccCHHHHHHhcccCHHHHHHHHHHHHHHHHHCCCC
Confidence            688999999988777665442221                                 33    35788999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHHhhccCCCcce-----ecCCCeEEEEEcCCCCCHHHHHHH
Q psy2881          48 FETTQFLLNELKKIIYSKKLFN----TEQVRNVLHNLLVNLLKSLEKPLIF-----KKCKPFVIMIVGVNGVGKTTTIGK  118 (302)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~l~~i~l-----~~~~g~ii~lvGpnGsGKTTll~~  118 (302)
                      ++++++|++.+++.+.+++...    .+.+++.+++.|.+.+.+.- .+++     .-.++.+++++|||||||||++++
T Consensus        81 ~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiak  159 (336)
T PRK14974         81 LEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAK  159 (336)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEEEcCCCCCHHHHHHH
Confidence            9999999999999987655422    34467777777777765321 1222     123478999999999999999999


Q ss_pred             HHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHH
Q psy2881         119 LANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSH  198 (302)
Q Consensus       119 Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~  198 (302)
                      ||..+...+.+|.+.+.|++|.++.+|++.|++..+++++....+.++...+++++..+...+.|+||+||||+.+....
T Consensus       160 LA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~  239 (336)
T PRK14974        160 LAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDAN  239 (336)
T ss_pred             HHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHH
Confidence            99999888889999999999999999999999999999988777778877778888777788999999999999999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEe
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG  278 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~  278 (302)
                      ++++|+++.+.      ..+|..++|++++.|++.+.+++.|+...+++++|+||+|++.++|.++++++..++||.|+|
T Consensus       240 lm~eL~~i~~~------~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~  313 (336)
T PRK14974        240 LMDELKKIVRV------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLG  313 (336)
T ss_pred             HHHHHHHHHHh------hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEe
Confidence            99999998764      347888999999999999999999998899999999999999999999999999999999999


Q ss_pred             cCCCCCcCccCChHHHHHHhccC
Q psy2881         279 IGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       279 ~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      +||+|+||++|+|++|+++|||.
T Consensus       314 ~Gq~v~Dl~~~~~~~~v~~llg~  336 (336)
T PRK14974        314 VGQGYDDLIPFDPDWFVDKLLGE  336 (336)
T ss_pred             CCCChhhcccCCHHHHHHHHhCC
Confidence            99999999999999999999983

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=100.00  E-value=1.5e-44  Score=339.97  Aligned_cols=286  Identities=33%  Similarity=0.519  Sum_probs=249.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCcCChH----HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHHH
Q psy2881           6 ITRLKESLSKTACNLKSLIVNKKIDKN----LYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNVL   77 (302)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l   77 (302)
                      |+.|.+++...   ++++.+...++++    .+++++..|+++||+..++++|++.+++...+++.    .+.+.+...+
T Consensus         2 l~~L~~~l~~~---~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v   78 (429)
T TIGR01425         2 LADLGSSITSA---LRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAV   78 (429)
T ss_pred             hhHHHHHHHHH---HHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHH
Confidence            56666666654   3344445578874    68999999999999999999999999998765552    2346788999


Q ss_pred             HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881          78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV  157 (302)
Q Consensus        78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~  157 (302)
                      .+.|.+.+.+....+++.-.++.+++++||+||||||++.+||.++...+.+|.+.++|++|.++++|++.|++..++|+
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~  158 (429)
T TIGR01425        79 FKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF  158 (429)
T ss_pred             HHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE
Confidence            99999988765555555555678999999999999999999999998777799999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881         158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~  237 (302)
                      +......++...+.+++.++...++|+||+||||+.+....++++|.++.+.      ..+++.++|++++.|++++.++
T Consensus       159 ~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~------~~p~e~lLVlda~~Gq~a~~~a  232 (429)
T TIGR01425       159 YGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEA------IQPDNIIFVMDGSIGQAAEAQA  232 (429)
T ss_pred             EeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhh------cCCcEEEEEeccccChhHHHHH
Confidence            8766666777777777877777789999999999999999999999998754      3578999999999999999999


Q ss_pred             HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      +.|++..+++++|+||+|+++++|.++++...+++||.|+|+||+++||++|+|++++++|+|
T Consensus       233 ~~F~~~~~~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg  295 (429)
T TIGR01425       233 KAFKDSVDVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG  295 (429)
T ss_pred             HHHHhccCCcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc
Confidence            999988999999999999999999999999999999999999999999999999999999998

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10867 signal recognition particle protein; Provisional

Probab=100.00  E-value=2.1e-43  Score=334.03  Aligned_cols=287  Identities=38%  Similarity=0.573  Sum_probs=251.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
                      ||++|.++++++.+++.   ....+++    +.+++++..|+++||+.+++++|++.+++...+++.    .+.+.+..+
T Consensus         1 mf~~l~~~l~~~~~~l~---~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   77 (433)
T PRK10867          1 MFESLSDRLSSAFKKLR---GKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKI   77 (433)
T ss_pred             ChHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHH
Confidence            68888888876644444   3445665    578999999999999999999999999998766542    355778999


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV  155 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~  155 (302)
                      +.+.|.+.+.+...++++.-.++.+++++||+||||||++.+||.++... +.+|.+.++|++|.++.+|++.|++..++
T Consensus        78 v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv  157 (433)
T PRK10867         78 VNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV  157 (433)
T ss_pred             HHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC
Confidence            99999999975445566655567999999999999999999999999877 78899999999999999999999999999


Q ss_pred             CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHH
Q psy2881         156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLS  235 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~  235 (302)
                      +++......++.....+++..+...++|+||+|+||+.+.+..++++|.++.+.      +.+++.++|++++.|++.+.
T Consensus       158 ~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~------v~p~evllVlda~~gq~av~  231 (433)
T PRK10867        158 PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA------VNPDEILLVVDAMTGQDAVN  231 (433)
T ss_pred             eEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh------hCCCeEEEEEecccHHHHHH
Confidence            988765556777777777777777889999999999888888999999998764      35788999999999999999


Q ss_pred             HHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         236 QIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       236 ~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      +++.|++.++++++|+||+|+++++|.+++++..+++||.|+|+||+++||++|+|++|+++|||
T Consensus       232 ~a~~F~~~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg  296 (433)
T PRK10867        232 TAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG  296 (433)
T ss_pred             HHHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC
Confidence            99999988999999999999999999999999999999999999999999999999999999998

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=100.00  E-value=2.6e-43  Score=317.17  Aligned_cols=271  Identities=51%  Similarity=0.742  Sum_probs=240.1

Q ss_pred             CChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCC
Q psy2881          29 IDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVN  108 (302)
Q Consensus        29 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpn  108 (302)
                      +.++++++|+..|+++||+++++++|++.+++.+..++..+.+.+++.+++.+.+.+.+.-..+++...++.+++++||+
T Consensus         2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~   81 (272)
T TIGR00064         2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVN   81 (272)
T ss_pred             ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCC
Confidence            45688999999999999999999999999999887777677788899999999888865423344445678999999999


Q ss_pred             CCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881         109 GVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVD  188 (302)
Q Consensus       109 GsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllD  188 (302)
                      |+||||++.+||..+...+.+|.+.+.|++|.++.+|+..|++..+++++......++....++.+..+...++|++|+|
T Consensus        82 G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViID  161 (272)
T TIGR00064        82 GVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLID  161 (272)
T ss_pred             CCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            99999999999999988888999999999999999999999999999988766666777666677777777899999999


Q ss_pred             CCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhh
Q psy2881         189 TSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK  268 (302)
Q Consensus       189 EP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~  268 (302)
                      +||+.+.+..++++|+++.+.........+|+.++|++++.+.+.+.++..|.+..+++++|+||+|++.++|.++++..
T Consensus       162 T~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~~~  241 (272)
T TIGR00064       162 TAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAY  241 (272)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHHHH
Confidence            99988889999999999987543333345889999999999999999999999888999999999999999999999999


Q ss_pred             HhCCceEEEecCCCCCcCccCChHHHHHHhc
Q psy2881         269 KYSIPLYFIGIGEKIEDLQIFNAVDFVNALL  299 (302)
Q Consensus       269 ~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~  299 (302)
                      .+++|+.|+|+||+++||++|+|++|+++||
T Consensus       242 ~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll  272 (272)
T TIGR00064       242 ELKLPIKFIGVGEKIDDLAPFDADWFVEALF  272 (272)
T ss_pred             HHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence            9999999999999999999999999999986

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=100.00  E-value=1.8e-41  Score=321.55  Aligned_cols=274  Identities=39%  Similarity=0.591  Sum_probs=236.8

Q ss_pred             HHHHHhhhcCcCChH----HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHhhccC
Q psy2881          18 CNLKSLIVNKKIDKN----LYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNVLHNLLVNLLKSLE   89 (302)
Q Consensus        18 ~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~l   89 (302)
                      +.+++++++..++++    .+++++..|+++||++++++++++.+++...+++    ..+.+.+.+.+.+.|.+.+...-
T Consensus         7 ~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~   86 (437)
T PRK00771          7 DALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEET   86 (437)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCc
Confidence            345556666688886    7889999999999999999999999998876654    34557778889999988886543


Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHH
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAI  169 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~  169 (302)
                      ..+++. .++.+++++|++||||||++++||..+...+.+|.+.++|++|.++.+|++.|++..++|++......++...
T Consensus        87 ~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i  165 (437)
T PRK00771         87 EPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEI  165 (437)
T ss_pred             cccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence            333343 4678999999999999999999999998777899999999999999999999999999998876555566666


Q ss_pred             HHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeE
Q psy2881         170 AFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGL  249 (302)
Q Consensus       170 ~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~  249 (302)
                      +.+++.++  .+.++||+||||+.+....++++|..+...      ..++++++|++++.|++.+.+++.|++.++++++
T Consensus       166 ~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~------~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv  237 (437)
T PRK00771        166 AKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEA------VKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI  237 (437)
T ss_pred             HHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHH------hcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence            66666554  345999999999989999999999998754      3588999999999999999999999988999999


Q ss_pred             EEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         250 IITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       250 i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      |+||+|+++++|.+++++..+++||.|+|+||+|+||++|+|++|+++|||
T Consensus       238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg  288 (437)
T PRK00771        238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG  288 (437)
T ss_pred             EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999998

>TIGR00959 ffh signal recognition particle protein

Probab=100.00  E-value=6.2e-41  Score=317.17  Aligned_cols=286  Identities=38%  Similarity=0.589  Sum_probs=245.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHHH
Q psy2881           6 ITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNVL   77 (302)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l   77 (302)
                      |+.|.+++++..+++   .+...+++    +.+++++..|+++||+.+++++|++.+++...+++    ..+.+.+...+
T Consensus         1 ~~~L~~~~~~~~~~l---~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v   77 (428)
T TIGR00959         1 FESLSERLQRIFKKL---SGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIV   77 (428)
T ss_pred             CchHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHH
Confidence            345566665543333   34456776    57899999999999999999999999998876544    24567788999


Q ss_pred             HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      .+.|.+.+.+.-..+++.-.++.++.++||+||||||++.+||..+. ..+.+|.+.++|++|.++.+|+..|++..+++
T Consensus        78 ~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp  157 (428)
T TIGR00959        78 HEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP  157 (428)
T ss_pred             HHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence            99999988764334555445578999999999999999999999876 46779999999999999999999999999999


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++......++.....+++..+...++|+||+|+||+.+.+..++.++.++.+.      +.+++.++|++++++++.+.+
T Consensus       158 ~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~------~~p~e~lLVvda~tgq~~~~~  231 (428)
T TIGR00959       158 VFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI------LNPDEILLVVDAMTGQDAVNT  231 (428)
T ss_pred             eEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh------hCCceEEEEEeccchHHHHHH
Confidence            88876666777676777777777889999999999888888899999998764      357899999999999999999


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ++.|...++++++|+||+|++.++|.+++++..+++||.|+++||+++||++|+|++|+++|||
T Consensus       232 a~~f~~~v~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg  295 (428)
T TIGR00959       232 AKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG  295 (428)
T ss_pred             HHHHHhhCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence            9999988999999999999999999999999999999999999999999999999999999998

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0780|consensus

Probab=100.00  E-value=1.2e-41  Score=307.35  Aligned_cols=263  Identities=37%  Similarity=0.553  Sum_probs=245.3

Q ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcC
Q psy2881          32 NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF----NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGV  107 (302)
Q Consensus        32 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGp  107 (302)
                      ..+.+|..+|+++||++.++.++.+++++.+..++..    ....+..++.++|.+.+.+-...+.+...++.++.++|.
T Consensus        30 ~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGL  109 (483)
T KOG0780|consen   30 TMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGL  109 (483)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEec
Confidence            4789999999999999999999999999998776643    345677888999999998866666677778899999999


Q ss_pred             CCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q psy2881         108 NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIV  187 (302)
Q Consensus       108 nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llll  187 (302)
                      +|+||||++.++|.+|+..+-++.+...|+||.+|.+|++.++...++|++..+...++..++.+.+.+..-.+.|+||+
T Consensus       110 qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIv  189 (483)
T KOG0780|consen  110 QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIV  189 (483)
T ss_pred             cCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999989899999999999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhh
Q psy2881         188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIA  267 (302)
Q Consensus       188 DEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~  267 (302)
                      ||.|+.+....+++++.++.+.      +.|.++.+|+|++.|+++..|++.|.+..++.++|+||+|+.+++|.++++.
T Consensus       190 DTSGRh~qe~sLfeEM~~v~~a------i~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV  263 (483)
T KOG0780|consen  190 DTSGRHKQEASLFEEMKQVSKA------IKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV  263 (483)
T ss_pred             eCCCchhhhHHHHHHHHHHHhh------cCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh
Confidence            9999999999999999999875      4588999999999999999999999999999999999999999999999999


Q ss_pred             hHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         268 KKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       268 ~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ..++.||.|||+||+++||++|+|+.|+++|||
T Consensus       264 aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLG  296 (483)
T KOG0780|consen  264 AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLG  296 (483)
T ss_pred             hhhCCCEEEEecCccccccCCCChHHHHHHHhc
Confidence            999999999999999999999999999999998

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=1e-40  Score=330.87  Aligned_cols=276  Identities=26%  Similarity=0.323  Sum_probs=231.0

Q ss_pred             HHHHHHHHHHHHHHH----HHhhh--cC-cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy2881           6 ITRLKESLSKTACNL----KSLIV--NK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLH   78 (302)
Q Consensus         6 ~~~~~~~~~~~~~~~----~~~~~--~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   78 (302)
                      ++.+++++.++++.+    ..+++  +. ..+++..+++++.|+++||+++++++|++.+.+.      .+.+.+++++.
T Consensus        92 ~~~l~~El~~lk~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~------~~~~~~~~~l~  165 (767)
T PRK14723         92 IGDLRGELQSMRGMLERQLAGLLWAAGEVAGRDPLRASLFRWLLGAGFSGQLARALLERLPVG------YDRPAAMAWIR  165 (767)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc------CCHHHHHHHHH
Confidence            466777777775443    33432  12 4567788999999999999999999999988643      35567889999


Q ss_pred             HHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          79 NLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        79 ~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      +.|.+.++ ++++.++.+.+|++++|+||||||||||+.+|++.+....|  +|.+.+.|++|+++.+|++.|++..+++
T Consensus       166 ~~L~~~l~-il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp  244 (767)
T PRK14723        166 NELATHLP-VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP  244 (767)
T ss_pred             HHHHHHhh-hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence            99998885 66777887878999999999999999999999999875543  8999999999999999999999999998


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++...   ++.. ..+++..  ..+.|+||+||||+++.+..+++++..+.+.      ..+|+.++|++++.+.+.+.+
T Consensus       245 v~~~~---~~~~-l~~al~~--~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~------~~p~e~~LVLsAt~~~~~l~~  312 (767)
T PRK14723        245 VHAVK---DAAD-LRFALAA--LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAASHGDTLNE  312 (767)
T ss_pred             ccccC---CHHH-HHHHHHH--hcCCCEEEEeCCCCCccCHHHHHHHHHHhcc------CCCCeEEEEECCCCcHHHHHH
Confidence            86543   3332 4455543  4578999999999988888899999887642      358899999999998877776


Q ss_pred             H-HHHHhh--cCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         237 I-KEFSKI--LRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       237 ~-~~f~~~--~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      . +.|+..  .+++++|+||+||+.++|.+++++..+++||+|+|+||+| +||++|+|+.|+++|++
T Consensus       313 i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        313 VVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             HHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhc
Confidence            4 788654  3799999999999999999999999999999999999999 99999999999999997

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=100.00  E-value=2.6e-40  Score=315.55  Aligned_cols=276  Identities=24%  Similarity=0.319  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHH----HHHHHhhhcC-cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy2881           6 ITRLKESLSKTA----CNLKSLIVNK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL   80 (302)
Q Consensus         6 ~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (302)
                      .+.+++++.+++    +++.+++|+. ..+++.+++|++.|+++||+++++++|++.+.+..      +.+.+++++++.
T Consensus       165 ~~~l~~El~~lr~~l~~~~~~l~~~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~------~~~~~~~~l~~~  238 (484)
T PRK06995        165 NDTVMQELRSLRGMLEEQLASLAWGERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGD------DAEAALDWVQSA  238 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhh------chhHHHHHHHHH
Confidence            456677777765    4455666644 56778899999999999999999999999987653      345678888888


Q ss_pred             HHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881          81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLAACDTFRAAAYEQLLILGKYNDVPVI  158 (302)
Q Consensus        81 l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~  158 (302)
                      +.+.+. ++++.++.+.+|.+++|+||||||||||+++||+.+....|  +|.+...|++|.++.+|+++|++..++++.
T Consensus       239 l~~~l~-~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~  317 (484)
T PRK06995        239 LAKNLP-VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH  317 (484)
T ss_pred             HHHHHh-hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee
Confidence            888875 45666777778999999999999999999999999976543  799999999999999999999999999877


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHH
Q psy2881         159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIK  238 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~  238 (302)
                      ......+..      ++..-+.+.+++++|++|+.+....+++.+..+.+.      ..+++..+|++++.+...+.+..
T Consensus       318 ~~~~~~Dl~------~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~------~~p~e~~LVLdAt~~~~~l~~i~  385 (484)
T PRK06995        318 AVKDAADLR------LALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGA------GAPVKRLLLLNATSHGDTLNEVV  385 (484)
T ss_pred             ccCCchhHH------HHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhcc------CCCCeeEEEEeCCCcHHHHHHHH
Confidence            654433322      233456788999999999877776666666655422      23677899999999998888876


Q ss_pred             HHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         239 EFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       239 ~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      .++...+++++|+||+|++.++|.+++++..+++||+|+|+||+| +||++|+++.|++++++
T Consensus       386 ~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        386 QAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             HHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence            666678899999999999999999999999999999999999999 99999999999999997

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=4.1e-39  Score=296.32  Aligned_cols=280  Identities=21%  Similarity=0.261  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNL   84 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   84 (302)
                      -|+.++..+.++.++++...|..+.   ...++++.|.+.||+++++.+|++.+.+.+......+.+.+++++.+.|...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~  194 (407)
T PRK12726        118 ELSAMRLELAALNRELAVKMREERE---QNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGK  194 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc---ccHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCc
Confidence            3566777777777777643343221   1337899999999999999999999988865555456788888888888887


Q ss_pred             hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCC
Q psy2881          85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKIT  164 (302)
Q Consensus        85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~  164 (302)
                      +.. ..  ++.+.+|++++|+||+||||||++.+||..+...+.+|.+.+.|++|.++.+||+.|++..+++++...   
T Consensus       195 l~~-~~--~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~---  268 (407)
T PRK12726        195 LAV-ED--SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT---  268 (407)
T ss_pred             Eee-CC--CceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC---
Confidence            743 22  455678999999999999999999999998877788999999999999999999999999999887542   


Q ss_pred             CHHHHHHHHHHHHH-hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHHh
Q psy2881         165 DPAAIAFNAINIAQ-KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFSK  242 (302)
Q Consensus       165 ~~~~~~~~~la~al-~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~~  242 (302)
                      ++.. ..+++..+. ..+.|+||+|+||+.+.....+++|.++.+.      ..+|...+|++++.+...+.+. +.| .
T Consensus       269 dp~d-L~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~------~~p~~~~LVLsag~~~~d~~~i~~~f-~  340 (407)
T PRK12726        269 SPAE-LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV------VHPDLTCFTFSSGMKSADVMTILPKL-A  340 (407)
T ss_pred             CHHH-HHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc------cCCceEEEECCCcccHHHHHHHHHhc-C
Confidence            3332 344454432 3678999999999888888899999888654      3567778999998877555554 455 5


Q ss_pred             hcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881         243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       243 ~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~  301 (302)
                      .++++++|+||+||++++|.+++++..+++||+|+|+||+| +|+..+++++++++++|.
T Consensus       341 ~l~i~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~  400 (407)
T PRK12726        341 EIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGT  400 (407)
T ss_pred             cCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhcc
Confidence            78999999999999999999999999999999999999999 899999999999999985

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=9.2e-39  Score=298.93  Aligned_cols=279  Identities=22%  Similarity=0.294  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy2881           6 ITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLL   85 (302)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l   85 (302)
                      ++.+.+.+..+++-+....  ..++++.++++++.|+++||+++++.+|++.+++.....+..+.+.+++.+.+.+.+.+
T Consensus        85 ~~~l~~el~~lk~~l~~~~--~~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i  162 (388)
T PRK12723         85 IEDVLKEVKSLKNELAHKK--EEINHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTI  162 (388)
T ss_pred             HHHHHHHHHHHHHHHHhhc--cccCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHh
Confidence            3445555555543333222  23456889999999999999999999999999888765555677888888888888777


Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK  161 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~  161 (302)
                      ... .+. .....+.+++++||||+||||++++||..+..    .+.+|.+.+.|++|.++.+|++.|++.+++|+....
T Consensus       163 ~~~-~~~-~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~  240 (388)
T PRK12723        163 KCS-GSI-IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE  240 (388)
T ss_pred             hcc-Ccc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC
Confidence            422 111 11235679999999999999999999998873    367999999999999999999999999999986553


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHH
Q psy2881         162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEF  240 (302)
Q Consensus       162 ~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f  240 (302)
                      .   . ......+++  ..++++||+||||+.+.....+.++.++.+..+     ..++.++|++++++.+++.+. ..|
T Consensus       241 ~---~-~~l~~~L~~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-----~~~e~~LVlsat~~~~~~~~~~~~~  309 (388)
T PRK12723        241 S---F-KDLKEEITQ--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDVKEIFHQF  309 (388)
T ss_pred             c---H-HHHHHHHHH--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-----CCCeEEEEEcCCCCHHHHHHHHHHh
Confidence            2   2 122333433  478999999999977765545666666654321     356899999999999777654 444


Q ss_pred             HhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         241 SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       241 ~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                       ..++++++|+||+|||+++|.+++++..+++|++|+|+||+| +||++|+|+.|++.|+|
T Consensus       310 -~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g  369 (388)
T PRK12723        310 -SPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKING  369 (388)
T ss_pred             -cCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcC
Confidence             367899999999999999999999999999999999999999 99999999999999998

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=5.9e-40  Score=281.98  Aligned_cols=196  Identities=38%  Similarity=0.579  Sum_probs=178.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      |.+++++||+||||||++.+||..+...+.+|.+...|++|.++.+|++.|++.+++|++......++.....+++...-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~   80 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR   80 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence            47899999999999999999999999779999999999999999999999999999999988777778777777777766


Q ss_pred             hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCC
Q psy2881         179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTT  258 (302)
Q Consensus       179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~  258 (302)
                      ..+.|+||+|+||+.+.....+++|+++.+..      .+++.++|++++.+++.+.+...|++.++++++|+||+||+.
T Consensus        81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~  154 (196)
T PF00448_consen   81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETA  154 (196)
T ss_dssp             HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSS
T ss_pred             hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCC
Confidence            77899999999999999999999999987652      578999999999999999999999999999999999999999


Q ss_pred             chhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         259 KGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       259 ~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ++|.+++++...++|++|+|+||+|+||++|+|++|+++|||
T Consensus       155 ~~G~~l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg  196 (196)
T PF00448_consen  155 RLGALLSLAYESGLPISYITTGQRVDDLEPASPERLASRLLG  196 (196)
T ss_dssp             TTHHHHHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred             CcccceeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence            999999999999999999999999999999999999999997

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=3.5e-38  Score=290.92  Aligned_cols=255  Identities=24%  Similarity=0.321  Sum_probs=212.7

Q ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCC
Q psy2881          32 NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVG  111 (302)
Q Consensus        32 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsG  111 (302)
                      ..+..++..|.++||+++++.++++.+.......+..+.+.+++.+.+.+...+...  . .+ ..++.+++|+||||||
T Consensus       178 ~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~-~~-~~~~~vI~LVGptGvG  253 (436)
T PRK11889        178 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTE--N-VF-EKEVQTIALIGPTGVG  253 (436)
T ss_pred             hHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccc--c-cc-ccCCcEEEEECCCCCc
Confidence            456789999999999999999999999876555444567788888888887777532  1 12 2346799999999999


Q ss_pred             HHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh-CCCCeEEEcCC
Q psy2881         112 KTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK-KNTDIVIVDTS  190 (302)
Q Consensus       112 KTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~-~~~~llllDEP  190 (302)
                      |||++.+||+.+...+.+|.+.+.|++|.++.+|++.|++..+++++...   ++... .+++..+-. .+.|+||+|+|
T Consensus       254 KTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~DvVLIDTa  329 (436)
T PRK11889        254 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVDYILIDTA  329 (436)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCCEEEEeCc
Confidence            99999999999887777999999999999999999999999999988653   33322 244443322 36899999999


Q ss_pred             CCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH-HHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhH
Q psy2881         191 GRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT-LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK  269 (302)
Q Consensus       191 ~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~-~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~  269 (302)
                      |+.+.....++++.++.+.      ..+|+.++|++++.+.++ ..+.+.|+. ++++++|+||+||++++|.+++++..
T Consensus       330 GRs~kd~~lm~EL~~~lk~------~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~  402 (436)
T PRK11889        330 GKNYRASETVEEMIETMGQ------VEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAV  402 (436)
T ss_pred             cccCcCHHHHHHHHHHHhh------cCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHH
Confidence            9888888888888877653      347889999999988744 556788874 89999999999999999999999999


Q ss_pred             hCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881         270 YSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       270 ~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~  301 (302)
                      +++||+|+|+||+| +||+.+++++++++++|.
T Consensus       403 ~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~  435 (436)
T PRK11889        403 SSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT  435 (436)
T ss_pred             HCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence            99999999999999 999999999999999985

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=3.2e-37  Score=286.40  Aligned_cols=277  Identities=22%  Similarity=0.321  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHH----HHHHhhhcC-cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy2881           8 RLKESLSKTAC----NLKSLIVNK-KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLV   82 (302)
Q Consensus         8 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   82 (302)
                      .+++++..+++    ++..+.|.. ...++....+.+.|.+.||++.+++++++.+....   +..+.+..+.++.+.+.
T Consensus        45 ~~~~El~~lr~ll~~~~~~~~w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~  121 (374)
T PRK14722         45 TVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGE---GYDTLDAAADWAQSVLA  121 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhc---ccCCHHHHHHHHHHHHH
Confidence            44444444432    333444433 22345568999999999999999999999886532   12355667888888887


Q ss_pred             HHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-C-CeEEEecccCCChhHHHHHHHhcccCCCCeeec
Q psy2881          83 NLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-K-KSVLLAACDTFRAAAYEQLLILGKYNDVPVISE  160 (302)
Q Consensus        83 ~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~-g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~  160 (302)
                      +.+. ++++.++.+.+|++++|+||||||||||+++|++.+... + .+|.+...|.+|.++.+|++.|++.+++++...
T Consensus       122 ~~l~-~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~  200 (374)
T PRK14722        122 ANLP-VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV  200 (374)
T ss_pred             hcch-hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec
Confidence            7774 556677778899999999999999999999999987644 3 489999999999999999999999999998877


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HH
Q psy2881         161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KE  239 (302)
Q Consensus       161 ~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~  239 (302)
                      ....+...    .+  .-..++++||+||||..+.+..+++++..+...      ..+.+.++|++++.+.+.+.+. ..
T Consensus       201 ~~~~~l~~----~l--~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~------~~~~~~lLVLsAts~~~~l~evi~~  268 (374)
T PRK14722        201 KDGGDLQL----AL--AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGA------DTPVQRLLLLNATSHGDTLNEVVQA  268 (374)
T ss_pred             CCcccHHH----HH--HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhcc------CCCCeEEEEecCccChHHHHHHHHH
Confidence            65555432    22  235788999999999888777888888877432      2356789999999999887764 78


Q ss_pred             HHhhc--------CCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         240 FSKIL--------RITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       240 f~~~~--------~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      |....        +++++|+||+||+.++|.+++++..+++|+.|+|+||+| |||++++++.+++++++
T Consensus       269 f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~  338 (374)
T PRK14722        269 YRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFC  338 (374)
T ss_pred             HHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhc
Confidence            87653        589999999999999999999999999999999999999 99999999999999986

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=5.7e-37  Score=288.66  Aligned_cols=250  Identities=26%  Similarity=0.286  Sum_probs=205.6

Q ss_pred             hHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCC
Q psy2881          31 KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGV  110 (302)
Q Consensus        31 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGs  110 (302)
                      ++....+.+.|+++||+++++++|++.+.....      .+..++++++.+.+.+...... . .+.+|++++|+|||||
T Consensus       131 ~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~-~-~~~~g~vi~lvGpnG~  202 (420)
T PRK14721        131 DPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRD------FEQSLKKTISLLTLNLRTIGGD-E-IIEQGGVYALIGPTGV  202 (420)
T ss_pred             CcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhcCCc-c-ccCCCcEEEEECCCCC
Confidence            345588999999999999999999998876542      2334566777776666532222 1 2468999999999999


Q ss_pred             CHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881         111 GKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVD  188 (302)
Q Consensus       111 GKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllD  188 (302)
                      |||||+++||+.+...  ..++.+...|.+|.++.+|+..|++.+++++.......+..      .+.....+.+++++|
T Consensus       203 GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~------~al~~l~~~d~VLID  276 (420)
T PRK14721        203 GKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ------LMLHELRGKHMVLID  276 (420)
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH------HHHHHhcCCCEEEec
Confidence            9999999999976422  24678888999999999999999999999987654433321      233446789999999


Q ss_pred             CCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhh
Q psy2881         189 TSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK  268 (302)
Q Consensus       189 EP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~  268 (302)
                      |+|..+....+++++..+...      ..+++.++|++++.+.+.+.+...++..++++++|+||+||+.++|.+++++.
T Consensus       277 TaGrsqrd~~~~~~l~~l~~~------~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~~~~  350 (420)
T PRK14721        277 TVGMSQRDQMLAEQIAMLSQC------GTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVI  350 (420)
T ss_pred             CCCCCcchHHHHHHHHHHhcc------CCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHHHHH
Confidence            999888888888888887432      24788999999999998888876666689999999999999999999999999


Q ss_pred             HhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         269 KYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       269 ~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      .+++|++|+|+||+| +||++|+++.|++++++
T Consensus       351 ~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~  383 (420)
T PRK14721        351 RRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK  383 (420)
T ss_pred             HhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence            999999999999999 99999999999999997

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=100.00  E-value=2.7e-36  Score=286.83  Aligned_cols=279  Identities=27%  Similarity=0.383  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcC---cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNK---KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLL   81 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   81 (302)
                      .++.+++++.++++.+.......   ...++.++++++.|++.||+++++.+|++.+........   . .+++++.+.|
T Consensus       131 ~~~~l~~el~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~---~-~~~~~~~~~L  206 (424)
T PRK05703        131 ELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRE---R-TAWRYLLELL  206 (424)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhH---H-HHHHHHHHHH
Confidence            56778888888876666555432   344678899999999999999999999999987753321   1 4788899999


Q ss_pred             HHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-h-CCCeEEEecccCCChhHHHHHHHhcccCCCCeee
Q psy2881          82 VNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-K-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS  159 (302)
Q Consensus        82 ~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~  159 (302)
                      .+.+...-.  .+ +.+|++++|+|||||||||++.+||+.+. . .+.+|.+.+.|++|.++.+|+..|++..++++..
T Consensus       207 ~~~l~~~~~--~~-~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~  283 (424)
T PRK05703        207 ANMIPVRVE--DI-LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV  283 (424)
T ss_pred             HHHhCcccc--cc-ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc
Confidence            988864322  33 56788999999999999999999999887 3 4568999999999999999999999999999876


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHH
Q psy2881         160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKE  239 (302)
Q Consensus       160 ~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~  239 (302)
                      .....+.    ...+.  ...++|+||+|+||..+.....++.|.++.+.     ...++...+|++++.+..++.+...
T Consensus       284 ~~~~~~l----~~~l~--~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~-----~~~~~~~~LVl~a~~~~~~l~~~~~  352 (424)
T PRK05703        284 VYDPKEL----AKALE--QLRDCDVILIDTAGRSQRDKRLIEELKALIEF-----SGEPIDVYLVLSATTKYEDLKDIYK  352 (424)
T ss_pred             cCCHHhH----HHHHH--HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc-----cCCCCeEEEEEECCCCHHHHHHHHH
Confidence            5443222    22232  23579999999999888888888888887652     1135678899999999888888644


Q ss_pred             HHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881         240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       240 f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~  301 (302)
                      ....++++++|+||+|++..+|.+++++...++|++|+|+||+| +||++|+|++|+++|||.
T Consensus       353 ~f~~~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~  415 (424)
T PRK05703        353 HFSRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGG  415 (424)
T ss_pred             HhCCCCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhcc
Confidence            44578889999999999999999999999999999999999999 999999999999999984

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=2.6e-36  Score=281.87  Aligned_cols=258  Identities=18%  Similarity=0.235  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCccee-cCCCeEEEEEcCCCC
Q psy2881          32 NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFK-KCKPFVIMIVGVNGV  110 (302)
Q Consensus        32 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~-~~~g~ii~lvGpnGs  110 (302)
                      +.+++|++.|+++||+++++.+|++.+.+.+...+..+.+.+++.+.+.|...+......++.. ..++.+++++||+||
T Consensus       155 ~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGv  234 (432)
T PRK12724        155 SPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGS  234 (432)
T ss_pred             hHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCC
Confidence            5678999999999999999999999999887665555667788889999988875321111111 135789999999999


Q ss_pred             CHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881         111 GKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       111 GKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDE  189 (302)
                      ||||++.+||..+. ..+.+|.+.+.|++|.++.+|++.|++..++++.....   .    ......+...++|+||+|+
T Consensus       235 GKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~---~----~~l~~~l~~~~~D~VLIDT  307 (432)
T PRK12724        235 GKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD---I----KKFKETLARDGSELILIDT  307 (432)
T ss_pred             CHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH---H----HHHHHHHHhCCCCEEEEeC
Confidence            99999999998664 45678999999999999999999999999998754311   1    1222222236899999999


Q ss_pred             CCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhH
Q psy2881         190 SGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK  269 (302)
Q Consensus       190 P~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~  269 (302)
                      ||.++.....++.|.++.+..+.   ..+++.++|++++.+++.+.+...+++.++++++|+||+||++++|.+++++..
T Consensus       308 aGr~~rd~~~l~eL~~~~~~~~~---~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i~~~  384 (432)
T PRK12724        308 AGYSHRNLEQLERMQSFYSCFGE---KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADT  384 (432)
T ss_pred             CCCCccCHHHHHHHHHHHHhhcC---CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHHHHH
Confidence            99888788888888888764321   136789999999999988877766668999999999999999999999999999


Q ss_pred             hCCceEEEecCCCC-CcCccCChHHHHHHhc
Q psy2881         270 YSIPLYFIGIGEKI-EDLQIFNAVDFVNALL  299 (302)
Q Consensus       270 ~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~  299 (302)
                      +++|++|+|+||+| +||++++++.|++.++
T Consensus       385 ~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~  415 (432)
T PRK12724        385 YSKSFTYLSVGQEVPFDILNATKNLMAECVV  415 (432)
T ss_pred             HCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence            99999999999999 9999999999999886

>KOG0781|consensus

Probab=100.00  E-value=7e-37  Score=282.58  Aligned_cols=272  Identities=31%  Similarity=0.506  Sum_probs=236.0

Q ss_pred             hhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHHHhhc-----cC
Q psy2881          23 LIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTE----QVRNVLHNLLVNLLKS-----LE   89 (302)
Q Consensus        23 ~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~l~~-----~l   89 (302)
                      +.+++.+.+    +.++.+.++|+..+|+++.|.+||+.+...+.+++..+..    .+++++++.|.++|.|     ++
T Consensus       287 lvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~~sVDlL  366 (587)
T KOG0781|consen  287 LVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQRSVDLL  366 (587)
T ss_pred             hcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCCchhhHH
Confidence            334466665    5789999999999999999999999999999998876655    4555666666666654     12


Q ss_pred             CCcce--ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC------CCCeeecC
Q psy2881          90 KPLIF--KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN------DVPVISEK  161 (302)
Q Consensus        90 ~~i~l--~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~------~~~~~~~~  161 (302)
                      ++|.=  .-+++.+++|+|.||+||||.|++||.|+...+-+|++.++|+||.+|+|||+.+.+++      .++++...
T Consensus       367 RdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekG  446 (587)
T KOG0781|consen  367 RDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKG  446 (587)
T ss_pred             HHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhh
Confidence            22211  12468999999999999999999999999999999999999999999999999988876      47788888


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHH
Q psy2881         162 KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFS  241 (302)
Q Consensus       162 ~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~  241 (302)
                      ++.++..++.++|+.|.-++.|++|+||+|+.+++..+|..|.++.+..      -+..+.+|..+-.|.+.+.|...|+
T Consensus       447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~------~pd~i~~vgealvg~dsv~q~~~fn  520 (587)
T KOG0781|consen  447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVN------KPDLILFVGEALVGNDSVDQLKKFN  520 (587)
T ss_pred             cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcC------CCceEEEehhhhhCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998753      4667788888999999999999999


Q ss_pred             hhcC-------CCeEEEecCCC-CCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         242 KILR-------ITGLIITKLDG-TTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       242 ~~~~-------~~~~i~tk~d~-~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      +.+.       +|++++||+|. ..+.|++++..+..+.||.|+|.||.+.||+..+.+++|+.||.
T Consensus       521 ~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm~  587 (587)
T KOG0781|consen  521 RALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLMK  587 (587)
T ss_pred             HHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhhC
Confidence            8752       89999999999 68899999999999999999999999999999999999999874

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=100.00  E-value=2.4e-36  Score=278.49  Aligned_cols=215  Identities=33%  Similarity=0.464  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      ........+.+.+.+....+++  .+.++.+++||||+|+|||||+++||+.+.  ....+|.++..|+||++|++|++.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~  254 (407)
T COG1419         177 YEDLRYFSEKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKT  254 (407)
T ss_pred             cchhhhHHHHHHHHHHhhcccc--ccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHH
Confidence            3344556666666666666666  345688999999999999999999999998  567899999999999999999999


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |++.+++|+.....+.+..      .|...+.++|+||+||.|+++.+...+++|+.+....      .+-+.+||++++
T Consensus       255 Ya~im~vp~~vv~~~~el~------~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~------~~i~~~Lvlsat  322 (407)
T COG1419         255 YADIMGVPLEVVYSPKELA------EAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVS------HSIEVYLVLSAT  322 (407)
T ss_pred             HHHHhCCceEEecCHHHHH------HHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc------ccceEEEEEecC
Confidence            9999999998886654433      2234568899999999999999999999999987541      355889999999


Q ss_pred             CChhHHHHH-HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         229 TGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       229 ~g~~~~~~~-~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      +..+++..+ +.|+ .++++++|+||+|||..+|.+++++++.++||+|+++||+| +||..++|++||++++|
T Consensus       323 ~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g  395 (407)
T COG1419         323 TKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG  395 (407)
T ss_pred             cchHHHHHHHHHhc-cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence            998888775 6774 89999999999999999999999999999999999999999 99999999999999998

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=100.00  E-value=7.6e-35  Score=260.72  Aligned_cols=249  Identities=24%  Similarity=0.300  Sum_probs=197.7

Q ss_pred             ChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceec-------CCCeEE
Q psy2881          30 DKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKK-------CKPFVI  102 (302)
Q Consensus        30 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~-------~~g~ii  102 (302)
                      .++.+.+++..|+++||+++++.++.+.....+...+. ..+.+.+.           +++++++.+       ++|+++
T Consensus        11 ~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~~-~~~~vl~~-----------v~~~l~~~~~~~~~~~~~~~~i   78 (270)
T PRK06731         11 VPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATM-ITEEVIEY-----------ILEDMSSHFNTENVFEKEVQTI   78 (270)
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCCc-cccHHHHH-----------HhcccEEeeCCcccccCCCCEE
Confidence            34667899999999999999999988855433322111 11222222           223333333       356899


Q ss_pred             EEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH-hCC
Q psy2881         103 MIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ-KKN  181 (302)
Q Consensus       103 ~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al-~~~  181 (302)
                      +++||||+||||++.+|++.+...+.+|.+...|.+|.++.+|++.+++..++++....   ++.. ..+.+...- ..+
T Consensus        79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~-l~~~l~~l~~~~~  154 (270)
T PRK06731         79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYFKEEAR  154 (270)
T ss_pred             EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHH-HHHHHHHHHhcCC
Confidence            99999999999999999999887778999999999999999999999999998877643   2322 233343321 247


Q ss_pred             CCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh-hHHHHHHHHHhhcCCCeEEEecCCCCCch
Q psy2881         182 TDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ-NTLSQIKEFSKILRITGLIITKLDGTTKG  260 (302)
Q Consensus       182 ~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~-~~~~~~~~f~~~~~~~~~i~tk~d~~~~~  260 (302)
                      +|++|+|+||+.+.....++++.++.+.      ..+++.++|++++.+. +...+.+.|+. ++++++|+||+||++++
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~------~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~  227 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQ------VEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASS  227 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhh------hCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCc
Confidence            8999999999988888888888887653      2466789999998776 66667789974 89999999999999999


Q ss_pred             hHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhccC
Q psy2881         261 GILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       261 g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~~  301 (302)
                      |.+++++..+++||.|+|+||+| +||+.+++++++++++|.
T Consensus       228 G~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~  269 (270)
T PRK06731        228 GELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT  269 (270)
T ss_pred             cHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence            99999999999999999999999 999999999999999985

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=100.00  E-value=4.4e-32  Score=258.95  Aligned_cols=273  Identities=22%  Similarity=0.288  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy2881           5 WITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL   80 (302)
Q Consensus         5 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (302)
                      .|..|+.++..++    +++.++-|+....++.-..+.+.|.+.||++++++.|++.+....      +....+.++.+.
T Consensus       261 ~l~~m~~El~~lR~lle~q~~~l~~~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~------~~~~~~~~l~~~  334 (559)
T PRK12727        261 ELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADT------ELHRGRGLMLGL  334 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhccc------chhhHHHHHHHH
Confidence            3556666666664    444555554333346677889999999999999999999876542      345567888888


Q ss_pred             HHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881          81 LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVI  158 (302)
Q Consensus        81 l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~  158 (302)
                      |.+.+...  +.++ +.+|++++|+||+|+|||||+.+|++.+...  +++|.+.+.|.+|.++.+|+..|+...++++.
T Consensus       335 L~~~l~v~--~~~~-l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~  411 (559)
T PRK12727        335 LSKRLPVA--PVDP-LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH  411 (559)
T ss_pred             HHHhcCcC--cccc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE
Confidence            88887422  2232 4679999999999999999999999987643  46899999999999999999999999888776


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH-H
Q psy2881         159 SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ-I  237 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~-~  237 (302)
                      ......    .....+.  ...++++||+|+||..+.+..++++|..+....       .....+|++++.+...+.. .
T Consensus       412 ~a~d~~----~L~~aL~--~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-------~~a~lLVLpAtss~~Dl~eii  478 (559)
T PRK12727        412 EADSAE----SLLDLLE--RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-------QVTSLLVLPANAHFSDLDEVV  478 (559)
T ss_pred             ecCcHH----HHHHHHH--HhccCCEEEecCCCcchhhHHHHHHHHHHHHhh-------cCCcEEEEECCCChhHHHHHH
Confidence            543221    2223333  236799999999997777777777776664321       2245678888876655544 4


Q ss_pred             HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      +.|. ..+++++|+||+|++.++|.+++++..+++||.|+|+||+| +||++|++.+|++++..
T Consensus       479 ~~f~-~~~~~gvILTKlDEt~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~  541 (559)
T PRK12727        479 RRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLED  541 (559)
T ss_pred             HHHH-hhCCeEEEEecCcCccchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHH
Confidence            6665 45789999999999999999999999999999999999999 99999999999998863

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.96  E-value=3.3e-29  Score=221.06  Aligned_cols=169  Identities=20%  Similarity=0.253  Sum_probs=133.0

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH---HHHhcccCCCC------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ---LLILGKYNDVP------  156 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q---l~~~~~~~~~~------  156 (302)
                      +++++++||++++|++++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+..+-   +.+++|....+      
T Consensus        15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~   94 (258)
T COG1120          15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY   94 (258)
T ss_pred             eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence            358899999999999999999999999999999999999999999999999876655432   23333332211      


Q ss_pred             ------------eeecCCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         157 ------------VISEKKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       157 ------------~~~~~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~  195 (302)
                                  ++......| .+.+.+                          .||||++++|+++|+||||   |..+
T Consensus        95 d~V~~GR~p~~~~~~~~~~~D-~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~  173 (258)
T COG1120          95 ELVLLGRYPHLGLFGRPSKED-EEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH  173 (258)
T ss_pred             ehHhhcCCcccccccCCCHhH-HHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence                        111111112 112212                          1999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcCC-------------CCh-hHHHHHHHHHhhcCCCeEEEecCC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN-------------TGQ-NTLSQIKEFSKILRITGLIITKLD  255 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~-------------~g~-~~~~~~~~f~~~~~~~~~i~tk~d  255 (302)
                      +.++++.+++++++.+.+++++.||+.++..++             .|. +.+.+.+.+.+.|+++..+....+
T Consensus       174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~~~~~~~~  247 (258)
T COG1120         174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDADVIEDPD  247 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCceEEEEcCC
Confidence            999999999999988999999999999988877             344 667778888889998877776554

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6.6e-28  Score=211.84  Aligned_cols=140  Identities=14%  Similarity=0.168  Sum_probs=109.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC------CChhHHHHHHHhcccCC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT------FRAAAYEQLLILGKYND------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~------~~~~~~~ql~~~~~~~~------  154 (302)
                      ++++|+||++.+|++++|+||||||||||++.|.|+++|.+|+|.+.+.+.      .+++++.|...+-..+.      
T Consensus        18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~   97 (254)
T COG1121          18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV   97 (254)
T ss_pred             eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence            589999999999999999999999999999999999999999999998754      23444444222111111      


Q ss_pred             --------CCeeecCCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 --------VPVISEKKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 --------~~~~~~~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                              ..++......| .+.+.+                          .|||||+++|++++||||+   |+.++.
T Consensus        98 V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~  176 (254)
T COG1121          98 VLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK  176 (254)
T ss_pred             HHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence                    11122111112 122222                          2999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+++.|++++++ |+++++++||+..|.+.+
T Consensus       177 ~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~  206 (254)
T COG1121         177 EIYDLLKELRQE-GKTVLMVTHDLGLVMAYF  206 (254)
T ss_pred             HHHHHHHHHHHC-CCEEEEEeCCcHHhHhhC
Confidence            999999999988 999999999999998866

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=6.5e-26  Score=196.48  Aligned_cols=139  Identities=19%  Similarity=0.110  Sum_probs=106.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-------HhcccC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-------ILGKYN------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-------~~~~~~------  153 (302)
                      .+++++||++++||+++|+||+|||||||+++|+|+.+|++|.|.+.|.|+......+...       +..|.+      
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l   98 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL   98 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence            5799999999999999999999999999999999999999999999998876433221111       111111      


Q ss_pred             -------------------------------CCCeeec---CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         154 -------------------------------DVPVISE---KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       154 -------------------------------~~~~~~~---~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                     ++.-...   .....-.+..+-+||||++.+|++||.||||   |..+.
T Consensus        99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~  178 (226)
T COG1136          99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA  178 (226)
T ss_pred             CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHH
Confidence                                           1110000   0011123344456999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..+++.+.++++..+.|++++|||..++.
T Consensus       179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA~  207 (226)
T COG1136         179 KEVLELLRELNKERGKTIIMVTHDPELAK  207 (226)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence            99999999999988999999999987754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.9e-25  Score=194.16  Aligned_cols=140  Identities=18%  Similarity=0.132  Sum_probs=106.4

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----HHHH------HHH-------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----AYEQ------LLI-------  148 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----~~~q------l~~-------  148 (302)
                      ..+++|+||++.+||+++|+||+|||||||++.|||+.+|++|+|.+.|..+...+    .+.|      |.+       
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l   95 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL   95 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence            36899999999999999999999999999999999999999999999997642211    0001      111       


Q ss_pred             ------------------hcccCCCCeeecCCCC--CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         149 ------------------LGKYNDVPVISEKKIT--DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       149 ------------------~~~~~~~~~~~~~~~~--~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                                        +-...|+.-+...++.  .-.+..+-+||||++.+|+++|||||+   |..++..+.++|.+
T Consensus        96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~  175 (248)
T COG1116          96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR  175 (248)
T ss_pred             hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHH
Confidence                              1112222212211111  123344456999999999999999997   99999999999999


Q ss_pred             HHHHhchhhccccceeehhh
Q psy2881         206 IKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +.+..++|++++|||+..++
T Consensus       176 lw~~~~~TvllVTHdi~EAv  195 (248)
T COG1116         176 LWEETRKTVLLVTHDVDEAV  195 (248)
T ss_pred             HHHhhCCEEEEEeCCHHHHH
Confidence            99999999999999877544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=2.1e-25  Score=189.25  Aligned_cols=141  Identities=13%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH----HHhcccCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL----LILGKYND--------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql----~~~~~~~~--------  154 (302)
                      .+++++|+++.+|++++|+||+||||||+++||.++..|++|+|.+.|.++.......++    ....|.++        
T Consensus        16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl   95 (240)
T COG1126          16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL   95 (240)
T ss_pred             EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence            579999999999999999999999999999999999999999999999766422211111    11111111        


Q ss_pred             ------------------------------CCeeecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         155 ------------------------------VPVISEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       155 ------------------------------~~~~~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                                                    +.-....++  ..-.+..+-+||||++.+|+++|+||||   ||....++
T Consensus        96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EV  175 (240)
T COG1126          96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV  175 (240)
T ss_pred             HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHH
Confidence                                          100000000  0111222334999999999999999998   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ++.++++++. |.|.+++||++-++-+.+
T Consensus       176 L~vm~~LA~e-GmTMivVTHEM~FAr~Va  203 (240)
T COG1126         176 LDVMKDLAEE-GMTMIIVTHEMGFAREVA  203 (240)
T ss_pred             HHHHHHHHHc-CCeEEEEechhHHHHHhh
Confidence            9999999876 899999999988865443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=4.2e-25  Score=191.36  Aligned_cols=142  Identities=15%  Similarity=0.146  Sum_probs=108.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~--------  155 (302)
                      .+++++||++++|++++++||+|||||||+++|.+++.|++|+|.++|.++.....++   .+.|.-|..++        
T Consensus        15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~e   94 (309)
T COG1125          15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE   94 (309)
T ss_pred             eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence            5789999999999999999999999999999999999999999999999986543332   23333333221        


Q ss_pred             -----CeeecCCCCCHH----------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         156 -----PVISEKKITDPA----------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       156 -----~~~~~~~~~~~~----------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                           |-..........                            +..+--++||++.+|+++|+|||+   |+-++..+
T Consensus        95 NIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~l  174 (309)
T COG1125          95 NIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL  174 (309)
T ss_pred             HHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHH
Confidence                 100100000000                            111112899999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+++.++.+..++|++++|||+..++.-+
T Consensus       175 Q~e~~~lq~~l~kTivfVTHDidEA~kLa  203 (309)
T COG1125         175 QEEIKELQKELGKTIVFVTHDIDEALKLA  203 (309)
T ss_pred             HHHHHHHHHHhCCEEEEEecCHHHHHhhh
Confidence            99999999999999999999998766544

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=7.9e-25  Score=187.92  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=108.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI---  163 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~---  163 (302)
                      .++++|||++++||+++||||+|||||||+++|+|+..|+.|+|.++|.++...... +++.|....|  ++++..+   
T Consensus        18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k-~lr~~r~~iG--mIfQ~~nLv~   94 (258)
T COG3638          18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK-ELRKLRRDIG--MIFQQFNLVP   94 (258)
T ss_pred             eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-HHHHHHHhce--eEeccCCccc
Confidence            578999999999999999999999999999999999999999999999887644332 2233322222  1111000   


Q ss_pred             ---------------------------CCHHHHH--------------------------HHHHHHHHhCCCCeEEEcCC
Q psy2881         164 ---------------------------TDPAAIA--------------------------FNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       164 ---------------------------~~~~~~~--------------------------~~~la~al~~~~~llllDEP  190 (302)
                                                 ......+                          +-+|||||+++|++||.|||
T Consensus        95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP  174 (258)
T COG3638          95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP  174 (258)
T ss_pred             ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence                                       0011111                          11299999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .   ||.+...+|+.|+++++..|.|+++..|++.++..++
T Consensus       175 vasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~  215 (258)
T COG3638         175 VASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYA  215 (258)
T ss_pred             ccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHH
Confidence            7   9999999999999999999999999999999887766

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.1e-25  Score=185.36  Aligned_cols=162  Identities=18%  Similarity=0.220  Sum_probs=116.9

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC---------------------hhHHHHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR---------------------AAAYEQL  146 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~---------------------~~~~~ql  146 (302)
                      +++++||++++|++++|+|||||||||++++|+.++.|++|+|.++|.|+.+                     ..+.|.+
T Consensus        17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl   96 (245)
T COG4555          17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL   96 (245)
T ss_pred             hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence            6789999999999999999999999999999999999999999999999754                     3345556


Q ss_pred             HHhcccCCCCeeecC--------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LILGKYNDVPVISEK--------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+++...++.-....                    .+.......+-+||||++++|+++++|||+   |..+...+.+.+
T Consensus        97 ~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi  176 (245)
T COG4555          97 KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI  176 (245)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHH
Confidence            666555443211000                    000001111223999999999999999996   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhh
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK  268 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~  268 (302)
                      +++... +++++++||.+.             +.+.++     |.+|+-+-.+....|+.-++..
T Consensus       177 ~q~k~e-gr~viFSSH~m~-------------EvealC-----Drvivlh~Gevv~~gs~~~l~~  222 (245)
T COG4555         177 KQLKNE-GRAVIFSSHIMQ-------------EVEALC-----DRVIVLHKGEVVLEGSIEALDA  222 (245)
T ss_pred             HHhhcC-CcEEEEecccHH-------------HHHHhh-----heEEEEecCcEEEcCCHHHHHH
Confidence            988754 889999999543             445554     5566656555544444443333

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.91  E-value=5.7e-25  Score=182.90  Aligned_cols=140  Identities=14%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--------  157 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--------  157 (302)
                      .++++++||++++||++.++||+||||||+++.|.+..+|+.|+|.++|.|+.+.... ++-.+.++.|+-|        
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~-~iP~LRR~IGvVFQD~rLL~~   93 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR-EIPFLRRQIGVVFQDFRLLPD   93 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccc-ccchhhheeeeEeeecccccc
Confidence            3589999999999999999999999999999999999999999999999998765432 2222333322111        


Q ss_pred             -----------eecC-CCCC--------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         158 -----------ISEK-KITD--------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       158 -----------~~~~-~~~~--------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                 .... .+.+                          -.+..+-+||||++.+|+++|.||||   |+...
T Consensus        94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s  173 (223)
T COG2884          94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS  173 (223)
T ss_pred             chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence                       0000 0000                          01122233999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .++|+.+.++++ .|.|++++|||..++-+.
T Consensus       174 ~~im~lfeeinr-~GtTVl~ATHd~~lv~~~  203 (223)
T COG2884         174 WEIMRLFEEINR-LGTTVLMATHDLELVNRM  203 (223)
T ss_pred             HHHHHHHHHHhh-cCcEEEEEeccHHHHHhc
Confidence            999999999986 499999999998876543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=4.8e-25  Score=190.44  Aligned_cols=143  Identities=12%  Similarity=0.187  Sum_probs=105.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH-hcccCCC-------C--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI-LGKYNDV-------P--  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~-~~~~~~~-------~--  156 (302)
                      .+++++||++.+|++++|||||||||||++++|+|+++|++|+|.+.|.|+....+.+..+. ..+.+++       .  
T Consensus        18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVl   97 (250)
T COG0411          18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVL   97 (250)
T ss_pred             EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHH
Confidence            37899999999999999999999999999999999999999999999999876544321100 0000000       0  


Q ss_pred             ----------------eeecCCCCCHH---HHHHH--------------------------HHHHHHhCCCCeEEEcCCC
Q psy2881         157 ----------------VISEKKITDPA---AIAFN--------------------------AINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       157 ----------------~~~~~~~~~~~---~~~~~--------------------------~la~al~~~~~llllDEP~  191 (302)
                                      +.......+..   +.+.+                          -||||++.+|++|+||||.
T Consensus        98 ENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa  177 (250)
T COG0411          98 ENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA  177 (250)
T ss_pred             HHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence                            00000000111   11111                          1999999999999999995


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCC
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT  229 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~  229 (302)
                         .+....++.+.++++.+..+.+++++.||+.+|++.++
T Consensus       178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~d  218 (250)
T COG0411         178 AGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLAD  218 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhcc
Confidence               66667789999999988778999999999999998773

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=2.2e-24  Score=185.78  Aligned_cols=173  Identities=17%  Similarity=0.184  Sum_probs=125.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC------------------ChhHHHHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF------------------RAAAYEQLLI  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~------------------~~~~~~ql~~  148 (302)
                      .+++|+||++++|++++++||||||||||+++|.|++.|+.|+|.|+|.+..                  +....+|+.+
T Consensus        16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~y   95 (300)
T COG4152          16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKY   95 (300)
T ss_pred             eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHH
Confidence            4789999999999999999999999999999999999999999999997753                  1234466666


Q ss_pred             hcccCCCCe------------------eecCCCCCH--HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         149 LGKYNDVPV------------------ISEKKITDP--AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       149 ~~~~~~~~~------------------~~~~~~~~~--~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                      ++..-|.+-                  .....-.+.  .....-.+..+++++|+++|||||+   ||-+.+.+-+.+.+
T Consensus        96 la~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~  175 (300)
T COG4152          96 LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE  175 (300)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHH
Confidence            666555431                  110000000  0001111445789999999999996   99999989999999


Q ss_pred             HHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEe
Q psy2881         206 IKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIG  278 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~  278 (302)
                      +++ .|.|+++++|.             +..++.++     |.+.+-+-..+...|.+.++...+|....|+.
T Consensus       176 lk~-~GatIifSsH~-------------Me~vEeLC-----D~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie  229 (300)
T COG4152         176 LKE-EGATIIFSSHR-------------MEHVEELC-----DRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE  229 (300)
T ss_pred             HHh-cCCEEEEecch-------------HHHHHHHh-----hhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence            876 49999999994             34556665     33344444456667777777777777777766

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.2e-24  Score=193.35  Aligned_cols=141  Identities=18%  Similarity=0.150  Sum_probs=107.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV-----------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~-----------  155 (302)
                      .+++++||++++|++++|||.+|||||||++++.++.+|++|+|.++|.|+...... .++...+..+.           
T Consensus        20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~-~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEA-ELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChH-HHHHHHhhccEEeccccccccc
Confidence            478999999999999999999999999999999999999999999999887654332 12222222111           


Q ss_pred             --------CeeecCC-CCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 --------PVISEKK-ITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 --------~~~~~~~-~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                              |+..... ..+..                          ++.+-+||||++.+|+++|.||||   ||.+..
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~  178 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ  178 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence                    1100000 00001                          111223999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+++.|++++++.|.|++++||++..+-+-|
T Consensus       179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic  209 (339)
T COG1135         179 SILELLKDINRELGLTIVLITHEMEVVKRIC  209 (339)
T ss_pred             HHHHHHHHHHHHcCCEEEEEechHHHHHHHh
Confidence            9999999999999999999999988766544

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=3.7e-24  Score=184.31  Aligned_cols=141  Identities=11%  Similarity=0.113  Sum_probs=109.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE------  160 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~------  160 (302)
                      .+++++||++++|++++|+||+|+||||+++.|.|+++|++|+|.+.|.|+...+..++. ...+++|+-|...      
T Consensus        22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~-~ir~r~GvlFQ~gALFssl  100 (263)
T COG1127          22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY-EIRKRMGVLFQQGALFSSL  100 (263)
T ss_pred             EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH-HHHhheeEEeecccccccc
Confidence            588999999999999999999999999999999999999999999999998765543332 2222222111000      


Q ss_pred             ------------CCCCCH------------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         161 ------------KKITDP------------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       161 ------------~~~~~~------------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                  ......                              ...-+.+||||++.+|+++++|||+   ||.+
T Consensus       101 tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~  180 (263)
T COG1127         101 TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS  180 (263)
T ss_pred             chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcch
Confidence                        000000                              1111223999999999999999997   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ...+-++++++++..+.|++++|||+.-+...+
T Consensus       181 a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~  213 (263)
T COG1127         181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIA  213 (263)
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhh
Confidence            999999999999999999999999988776654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.90  E-value=2.4e-24  Score=198.03  Aligned_cols=142  Identities=13%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhcccC----CCC-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKYN----DVP-----  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~~----~~~-----  156 (302)
                      .+++|+||++.+||+++|+|||||||||+|++|||+..|++|+|.++|.|+...+..+ .+..+.|.+    +..     
T Consensus        19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NV   98 (352)
T COG3842          19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENV   98 (352)
T ss_pred             eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHh
Confidence            4789999999999999999999999999999999999999999999999987544321 111111110    000     


Q ss_pred             ---ee--------------------------ecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         157 ---VI--------------------------SEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       157 ---~~--------------------------~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         +.                          ....+  ..-.+..+-+||||++.+|+++|+|||.   |...+.++..+
T Consensus        99 afGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E  178 (352)
T COG3842          99 AFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE  178 (352)
T ss_pred             hhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH
Confidence               00                          00000  0001222334999999999999999996   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+..|.|.+++|||...++..+
T Consensus       179 lk~lq~~~giT~i~VTHDqeEAl~ms  204 (352)
T COG3842         179 LKELQRELGITFVYVTHDQEEALAMS  204 (352)
T ss_pred             HHHHHHhcCCeEEEEECCHHHHhhhc
Confidence            99999999999999999998877665

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=2.9e-23  Score=181.43  Aligned_cols=139  Identities=15%  Similarity=0.141  Sum_probs=104.6

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HHHHHHH-hcccCCCCeee-----
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AYEQLLI-LGKYNDVPVIS-----  159 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~~ql~~-~~~~~~~~~~~-----  159 (302)
                      +.+|+||++++|++++++||||||||||+++|+|++.|++|+|.++|.++++..  ...++.. ++++.+..+--     
T Consensus        39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds  118 (325)
T COG4586          39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS  118 (325)
T ss_pred             hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence            678999999999999999999999999999999999999999999999998621  1111111 12222211100     


Q ss_pred             ----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         160 ----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       160 ----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                                                        ........+.++.-||.+++++|++++|||||   |...+.++.+.
T Consensus       119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F  198 (325)
T COG4586         119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF  198 (325)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence                                              00001112222333889999999999999998   88999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |+++++..+.|++.+||++.-+..
T Consensus       199 lke~n~~~~aTVllTTH~~~di~~  222 (325)
T COG4586         199 LKEYNEERQATVLLTTHIFDDIAT  222 (325)
T ss_pred             HHHHHHhhCceEEEEecchhhHHH
Confidence            999999999999999998764443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.89  E-value=2.6e-23  Score=189.54  Aligned_cols=142  Identities=15%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------------hHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------------AAYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------------~~~~q  145 (302)
                      .+++++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.|..+.                     ...+.
T Consensus        19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~   98 (293)
T COG1131          19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN   98 (293)
T ss_pred             EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHH
Confidence            589999999999999999999999999999999999999999999999876531                     12333


Q ss_pred             HHHhcccCCCC------------------eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         146 LLILGKYNDVP------------------VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       146 l~~~~~~~~~~------------------~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                      +.+++...+.+                  -...  .......+..+-.||.|++.+|+++|||||+   |+.....+++.
T Consensus        99 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~  178 (293)
T COG1131          99 LEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL  178 (293)
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHH
Confidence            33333333221                  0000  0001122333344999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++++..+.+++++||.+..+...+
T Consensus       179 l~~l~~~g~~tvlissH~l~e~~~~~  204 (293)
T COG1131         179 LRELAKEGGVTILLSTHILEEAEELC  204 (293)
T ss_pred             HHHHHhCCCcEEEEeCCcHHHHHHhC
Confidence            99999875589999999777665533

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.7e-23  Score=180.80  Aligned_cols=142  Identities=19%  Similarity=0.157  Sum_probs=106.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH----HHH-----------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA----YEQ-----------------  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~----~~q-----------------  145 (302)
                      +++++|||++.+||+++|+|++|||||||.+.|+|+.+|+.|+|.+.|........    ...                 
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            58899999999999999999999999999999999999999999999965432110    000                 


Q ss_pred             --------------------HHHhcccCCCCe--eecC-CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         146 --------------------LLILGKYNDVPV--ISEK-KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       146 --------------------l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                                          ...+....+++-  .... ....-.+..+-+||||+..+|++||+|||+   |...+..+
T Consensus       101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I  180 (252)
T COG1124         101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI  180 (252)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence                                111111122211  0000 001112333445999999999999999998   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ++.|.++.+..+.+.+++|||+.++-.-+
T Consensus       181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~c  209 (252)
T COG1124         181 LNLLLELKKERGLTYLFISHDLALVEHMC  209 (252)
T ss_pred             HHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence            99999999999999999999988765444

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.4e-23  Score=172.07  Aligned_cols=142  Identities=18%  Similarity=0.251  Sum_probs=108.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      .+++++|+++++|.+++||||||||||||+.++++++++++|+|.+.|.++......   +.+..+.+...         
T Consensus        15 ~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~d   94 (252)
T COG4604          15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD   94 (252)
T ss_pred             EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHH
Confidence            589999999999999999999999999999999999999999999999987644322   12222222211         


Q ss_pred             ------CCeeecCCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         155 ------VPVISEKKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       155 ------~~~~~~~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                            .|+-......+....+.+                          .+|+.++++.|++++|||-   |..+...+
T Consensus        95 Lv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~i  174 (252)
T COG4604          95 LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI  174 (252)
T ss_pred             HhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHH
Confidence                  121111111112222222                          2788889999999999996   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+.|++++++.++|++++-||+.++-.++
T Consensus       175 Mk~Lrrla~el~KtiviVlHDINfAS~Ys  203 (252)
T COG4604         175 MKILRRLADELGKTIVVVLHDINFASCYS  203 (252)
T ss_pred             HHHHHHHHHHhCCeEEEEEecccHHHhhh
Confidence            99999999999999999999999876554

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.1e-23  Score=192.76  Aligned_cols=141  Identities=11%  Similarity=0.115  Sum_probs=106.7

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH--------------------H--
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE--------------------Q--  145 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~--------------------q--  145 (302)
                      +++++|+++.+||+++|+|||||||||||++|||+..|++|+|.+.|.|.......+                    .  
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia   97 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA   97 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence            789999999999999999999999999999999999999999999999876432211                    0  


Q ss_pred             ----------------HHHhcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881         146 ----------------LLILGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK  204 (302)
Q Consensus       146 ----------------l~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~  204 (302)
                                      .+..++.+++.-+-..  ....-.+..+-+++||++++|+++|+|||.   |...+..+..+|+
T Consensus        98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~  177 (338)
T COG3839          98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK  177 (338)
T ss_pred             hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence                            1111111111110000  001112223335999999999999999997   8999999999999


Q ss_pred             HHHHHhchhhccccceeehhhcCC
Q psy2881         205 KIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       205 ~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ++.+..+.|.+.+|||...++.-+
T Consensus       178 ~lh~~l~~T~IYVTHDq~EAmtla  201 (338)
T COG3839         178 KLHERLGTTTIYVTHDQVEAMTLA  201 (338)
T ss_pred             HHHHhcCCcEEEEcCCHHHHHhhC
Confidence            999999999999999988776654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.89  E-value=3.6e-23  Score=173.14  Aligned_cols=131  Identities=13%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDP  166 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~  166 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......+.   +.  ..+.+..+   ...
T Consensus        14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~---~~--~~i~~~~q---LS~   85 (163)
T cd03216          14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDA---RR--AGIAMVYQ---LSV   85 (163)
T ss_pred             EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHH---Hh--cCeEEEEe---cCH
Confidence            57899999999999999999999999999999999999999999999987654332111   11  12333333   334


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+..+-++|+|++.+|+++|+|||+   |..+...+.+.|+++.+. +.++++++||...+..
T Consensus        86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~  147 (163)
T cd03216          86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFE  147 (163)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            4555667999999999999999997   999999999999998654 7899999998775443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=2.1e-23  Score=179.00  Aligned_cols=142  Identities=12%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH----HhcccCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL----ILGKYND--------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~----~~~~~~~--------  154 (302)
                      .+++++||++++|++++++||||||||||++.|+|+.++.+|+|.+.|.|+.+....+..+    +..+-.+        
T Consensus        17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVe   96 (237)
T COG0410          17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE   96 (237)
T ss_pred             eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence            4789999999999999999999999999999999999999999999999987655433211    1111100        


Q ss_pred             ----CCeeecCC--C-CC------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         155 ----VPVISEKK--I-TD------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       155 ----~~~~~~~~--~-~~------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                          +..+....  . ..                        -.+...-+|+||++.+|++++||||+   -|.-.++++
T Consensus        97 ENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~  176 (237)
T COG0410          97 ENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  176 (237)
T ss_pred             HHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHH
Confidence                00011000  0 00                        01111223999999999999999997   677788899


Q ss_pred             HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.++++++..+.+++++.++..++++.+
T Consensus       177 ~~i~~l~~~~g~tIlLVEQn~~~Al~ia  204 (237)
T COG0410         177 EAIKELRKEGGMTILLVEQNARFALEIA  204 (237)
T ss_pred             HHHHHHHHcCCcEEEEEeccHHHHHHhh
Confidence            9999999877789998888877766544

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.89  E-value=3.8e-23  Score=192.05  Aligned_cols=142  Identities=17%  Similarity=0.141  Sum_probs=104.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYNDVP----  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~~~----  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+      .+.+..+...+.    
T Consensus        19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t   98 (343)
T TIGR02314        19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence            5799999999999999999999999999999999999999999999998875432211      011111111100    


Q ss_pred             e-----eec-CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V-----ISE-KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~-----~~~-~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +     +.. ..+..                             -.+..+-+||||++.+|+++|+|||+   |+.+...
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~  178 (343)
T TIGR02314        99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS  178 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence            0     000 00000                             01111223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.|+++++..+.+++++||++..+...+
T Consensus       179 i~~lL~~l~~~~g~tiiliTH~~~~v~~~~  208 (343)
T TIGR02314       179 ILELLKEINRRLGLTILLITHEMDVVKRIC  208 (343)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            999999998877899999999998776543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.89  E-value=3.5e-23  Score=180.91  Aligned_cols=138  Identities=17%  Similarity=0.115  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-------HHHHHhcccCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-------EQLLILGKYNDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-------~ql~~~~~~~~~----  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......       .++.+..+...+    
T Consensus        18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (218)
T cd03255          18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL   97 (218)
T ss_pred             eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence            578999999999999999999999999999999999999999999998765432110       111111111100    


Q ss_pred             Ce------eecCCCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 PV------ISEKKIT-----------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 ~~------~~~~~~~-----------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      .+      .......                             ...+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (218)
T cd03255          98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK  177 (218)
T ss_pred             cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence            00      0000000                             001111123999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+.+.|+++.+..+.++++++|+...+
T Consensus       178 ~l~~~l~~~~~~~~~tii~~sH~~~~~  204 (218)
T cd03255         178 EVMELLRELNKEAGTTIVVVTHDPELA  204 (218)
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence            999999999765578999999986553

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.5e-23  Score=186.08  Aligned_cols=142  Identities=13%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc---cCCChhHHH-HHH----Hhccc------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC---DTFRAAAYE-QLL----ILGKY------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~---d~~~~~~~~-ql~----~~~~~------  152 (302)
                      .++++++++++.||.++|+|||||||||++++|||+..|+.|+|.++|.   |..+....+ .+.    .|+..      
T Consensus        16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa   95 (345)
T COG1118          16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA   95 (345)
T ss_pred             cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence            4677999999999999999999999999999999999999999999999   654422111 011    11100      


Q ss_pred             ----CCCCeeecCC-------------------------CC--CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         153 ----NDVPVISEKK-------------------------IT--DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       153 ----~~~~~~~~~~-------------------------~~--~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                          +|+.+.....                         +.  .-.+..+-++|||++..|++||||||.   |.+-..+
T Consensus        96 ~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~  175 (345)
T COG1118          96 DNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  175 (345)
T ss_pred             hhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHH
Confidence                0111110000                         00  011122234999999999999999996   8899999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +..+|+++.+..+.+.+++|||...+++-+
T Consensus       176 lr~wLr~~~~~~~~ttvfVTHD~eea~~la  205 (345)
T COG1118         176 LRRWLRKLHDRLGVTTVFVTHDQEEALELA  205 (345)
T ss_pred             HHHHHHHHHHhhCceEEEEeCCHHHHHhhc
Confidence            999999999998999999999998877765

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.88  E-value=8e-23  Score=173.68  Aligned_cols=140  Identities=16%  Similarity=0.177  Sum_probs=105.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHH---hcccCCCCeee-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLI---LGKYNDVPVIS-  159 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~---~~~~~~~~~~~-  159 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.++......   ..+.+   +.+..++.-.. 
T Consensus        13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~   92 (180)
T cd03214          13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLAD   92 (180)
T ss_pred             eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhc
Confidence            478999999999999999999999999999999999999999999998876432211   11111   22233332111 


Q ss_pred             -cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         160 -EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       160 -~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       ........+..+-+|+||++.+|+++|+|||+   |..+...+++.|.++.+..+.++++++|+...+.+
T Consensus        93 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~  163 (180)
T cd03214          93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR  163 (180)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence             11122334555567999999999999999997   99999999999999876546789999998776543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.88  E-value=4e-23  Score=179.96  Aligned_cols=140  Identities=13%  Similarity=0.111  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....                    .+.+
T Consensus        14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l   93 (213)
T cd03259          14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI   93 (213)
T ss_pred             eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence            57899999999999999999999999999999999999999999998876532110                    1111


Q ss_pred             HHh------------------cccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LIL------------------GKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      ...                  .+..++.-...  .......+..+-+||+|++.+|+++|+|||+   |+.+...+++.|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03259          94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL  173 (213)
T ss_pred             HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            000                  00001100000  0001112222334999999999999999998   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .++.+..+.++++++||...+..
T Consensus       174 ~~~~~~~~~tii~~sH~~~~~~~  196 (213)
T cd03259         174 KELQRELGITTIYVTHDQEEALA  196 (213)
T ss_pred             HHHHHHcCCEEEEEecCHHHHHH
Confidence            99977557899999998765443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.88  E-value=8.5e-23  Score=173.20  Aligned_cols=138  Identities=12%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HH---HHHHHhcccCCCCeeecC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AY---EQLLILGKYNDVPVISEK  161 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~---~ql~~~~~~~~~~~~~~~  161 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+.....  ..   .++.+..+....  +...
T Consensus        14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~   91 (178)
T cd03229          14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL--FPHL   91 (178)
T ss_pred             EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCcc--CCCC
Confidence            5789999999999999999999999999999999999999999999998765332  11   111111221111  0000


Q ss_pred             CC-------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         162 KI-------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       162 ~~-------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ..       ....+..+-+|++|++.+|+++|+|||+   |..+...+++.|.++++..+.++++++||...+.+
T Consensus        92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~  166 (178)
T cd03229          92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR  166 (178)
T ss_pred             CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            00       2233445556999999999999999997   99999999999999987546899999998776543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.88  E-value=8.9e-23  Score=172.30  Aligned_cols=134  Identities=14%  Similarity=0.148  Sum_probs=102.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCeeecCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVISEKKI  163 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~~~~~~  163 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.++......   .++.+..+...  ++. ..-
T Consensus        16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv   92 (173)
T cd03246          16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE--LFS-GSI   92 (173)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc--ccc-CcH
Confidence            478999999999999999999999999999999999999999999999876533221   11111112111  110 000


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         164 ----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       164 ----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                          ....+..+-+||+|++.+|+++|+|||+   |+.+...+++.|+++.+ .+.++++++||...+
T Consensus        93 ~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~  159 (173)
T cd03246          93 AENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETL  159 (173)
T ss_pred             HHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH
Confidence                2233445556999999999999999997   99999999999999875 378999999987654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.88  E-value=5e-21  Score=161.40  Aligned_cols=172  Identities=52%  Similarity=0.770  Sum_probs=144.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKK  180 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~  180 (302)
                      ++.++||+|+||||++..++..+...+.+|.+.+.|.++.+..+++..|.+..++++.......++.....+.+..+...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE   81 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            68899999999999999999988877789999999999998889999999888888877655556665555666666678


Q ss_pred             CCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCch
Q psy2881         181 NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKG  260 (302)
Q Consensus       181 ~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~  260 (302)
                      +++++|+|+|+..+.....+..+..+...      ..+....+|+++..+.+.+.....|.+..+++++|+||+|++.+.
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~------~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRV------VKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhh------cCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCc
Confidence            89999999999665566777777776542      235677889998877777777788877778999999999999999


Q ss_pred             hHHHHhhhHhCCceEEEe
Q psy2881         261 GILAAIAKKYSIPLYFIG  278 (302)
Q Consensus       261 g~~~~~~~~~~~pv~~~~  278 (302)
                      |.+++++..+++|+.|+|
T Consensus       156 g~~~~~~~~~~~p~~~~~  173 (173)
T cd03115         156 GAALSIRAVTGKPIKFIG  173 (173)
T ss_pred             chhhhhHHHHCcCeEeeC
Confidence            999999999999999986

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.88  E-value=7.4e-23  Score=180.95  Aligned_cols=140  Identities=12%  Similarity=0.123  Sum_probs=100.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....      ...+.+..+...+    .
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (235)
T cd03261          14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT   93 (235)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence            47899999999999999999999999999999999999999999999877543211      0111111111110    0


Q ss_pred             e------eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 V------ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ~------~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +      ... ...                             ....+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~  173 (235)
T cd03261          94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG  173 (235)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            0      000 000                             0011112223999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|+++.+..+.++++++||...+..
T Consensus       174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~  202 (235)
T cd03261         174 VIDDLIRSLKKELGLTSIMVTHDLDTAFA  202 (235)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence            99999999876557899999998776543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.88  E-value=4.4e-23  Score=174.17  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=102.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCCeeecCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVPVISEKKI-  163 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~~~~~~~~-  163 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.++|.+......  ...+.+..+...  ++....- 
T Consensus        14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~   91 (173)
T cd03230          14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS--LYENLTVR   91 (173)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--cccCCcHH
Confidence            47899999999999999999999999999999999999999999999987643221  000111111111  1110000 


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         164 ----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       164 ----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                          ....+..+-+||+|++.+|+++|+|||+   |..+...+.+.|+++.+. +.++++++||...+..
T Consensus        92 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~  160 (173)
T cd03230          92 ENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAER  160 (173)
T ss_pred             HHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH
Confidence                1223444556999999999999999997   999999999999999765 7889999998776543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.88  E-value=3.5e-23  Score=189.98  Aligned_cols=141  Identities=15%  Similarity=0.107  Sum_probs=103.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP--------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~--------  156 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+...  ...+.+..+...+.        
T Consensus        21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~  100 (306)
T PRK13537         21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN  100 (306)
T ss_pred             EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence            47899999999999999999999999999999999999999999999988643211  11111111111100        


Q ss_pred             --eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         157 --VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       157 --~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                        ++....+                             ....+..+-.||+|++.+|+++|+|||+   |+.++..+++.
T Consensus       101 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~  180 (306)
T PRK13537        101 LLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER  180 (306)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence              0000000                             0111222223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+. +.+++++||++..+...+
T Consensus       181 l~~l~~~-g~till~sH~l~e~~~~~  205 (306)
T PRK13537        181 LRSLLAR-GKTILLTTHFMEEAERLC  205 (306)
T ss_pred             HHHHHhC-CCEEEEECCCHHHHHHhC
Confidence            9999654 889999999988775543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.88  E-value=1.4e-22  Score=170.78  Aligned_cols=134  Identities=17%  Similarity=0.193  Sum_probs=100.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCCeeecCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVPVISEKKI  163 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~~~~~~~~  163 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|.+|+|.+.|.++.......   .+.+..+..   .+.....
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~---~~~~~t~   92 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP---FLFSGTI   92 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc---hhccchH
Confidence            4789999999999999999999999999999999999999999999998764322211   111111111   1111000


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         164 ----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       164 ----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                          ....+..+-+||+|++.+|+++|+|||+   |..+...+++.|.++.+  +.++++++||...+.
T Consensus        93 ~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~  159 (171)
T cd03228          93 RENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIR  159 (171)
T ss_pred             HHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHHH
Confidence                1223344456999999999999999997   88899999999998853  578999999877653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.88  E-value=8.8e-23  Score=178.18  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=100.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....      ..++.+..+...+    .
T Consensus        17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (216)
T TIGR00960        17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT   96 (216)
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence            47899999999999999999999999999999999999999999999876532111      1112222221110    0


Q ss_pred             ee-----e-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 VI-----S-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~~-----~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +.     . ....                             ....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  176 (216)
T TIGR00960        97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD  176 (216)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence            00     0 0000                             0011111223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|.++.+. +.+++++|||...+..
T Consensus       177 l~~~l~~~~~~-~~tii~vsH~~~~~~~  203 (216)
T TIGR00960       177 IMRLFEEFNRR-GTTVLVATHDINLVET  203 (216)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            99999998654 7899999999776544

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=8.7e-23  Score=179.57  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=104.9

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-hhHH---HHHHHhcccCCCCe----
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-AAAY---EQLLILGKYNDVPV----  157 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-~~~~---~ql~~~~~~~~~~~----  157 (302)
                      .++++++||++.+|+.++|+|||||||||+++.++|+++|++|.|.+.|.++.. ....   ++..+..|...-.+    
T Consensus        17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t   96 (235)
T COG1122          17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT   96 (235)
T ss_pred             ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence            367899999999999999999999999999999999999999999999887542 1110   01111111111000    


Q ss_pred             -------eecCCCCCHH---HHH--------------------------HHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         158 -------ISEKKITDPA---AIA--------------------------FNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       158 -------~~~~~~~~~~---~~~--------------------------~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                             -....+....   ..+                          +-+||.+++.+|+++|+||||   |+.....
T Consensus        97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~  176 (235)
T COG1122          97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE  176 (235)
T ss_pred             HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence                   0000011111   111                          113999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.++++....+.+++++|||+..+...+
T Consensus       177 l~~~l~~L~~~~~~tii~~tHd~~~~~~~a  206 (235)
T COG1122         177 LLELLKKLKEEGGKTIIIVTHDLELVLEYA  206 (235)
T ss_pred             HHHHHHHHHhcCCCeEEEEeCcHHHHHhhC
Confidence            999999999887899999999999877754

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=1.9e-22  Score=175.62  Aligned_cols=140  Identities=13%  Similarity=0.180  Sum_probs=100.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql  146 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++....                    ..+.+
T Consensus        14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l   93 (213)
T cd03301          14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI   93 (213)
T ss_pred             eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence            4789999999999999999999999999999999999999999999887653211                    01111


Q ss_pred             HHh------------------cccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LIL------------------GKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      ...                  .+..++.-...  .......+..+-+||+|++.+|+++|+|||+   |+.+...+++.|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03301          94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL  173 (213)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            100                  00000000000  0001111222223999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++++..+.++++++||...+..
T Consensus       174 ~~~~~~~~~tvi~~sH~~~~~~~  196 (213)
T cd03301         174 KRLQQRLGTTTIYVTHDQVEAMT  196 (213)
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHH
Confidence            99987667899999998776544

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.88  E-value=1.3e-22  Score=176.39  Aligned_cols=139  Identities=21%  Similarity=0.206  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC--CC---e-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--VP---V-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--~~---~-  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....   ...+.+..+...  .+   + 
T Consensus        15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~   94 (211)
T cd03225          15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE   94 (211)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence            47899999999999999999999999999999999999999999999876532111   111111122110  00   0 


Q ss_pred             -----eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         158 -----ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       158 -----~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                           .....                             .....+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~  174 (211)
T cd03225          95 EEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL  174 (211)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence                 00000                             00011111223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhc
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.|.++.+. +.+++++|||...+..
T Consensus       175 ~~l~~~~~~-~~tvi~~sH~~~~~~~  199 (211)
T cd03225         175 ELLKKLKAE-GKTIIIVTHDLDLLLE  199 (211)
T ss_pred             HHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence            999998765 7899999999776544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.2e-22  Score=179.52  Aligned_cols=138  Identities=14%  Similarity=0.167  Sum_probs=99.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-------HHHhcccCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-------LLILGKYNDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~~----  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+.       +.+..+...+    
T Consensus        23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  102 (233)
T PRK11629         23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF  102 (233)
T ss_pred             eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence            47899999999999999999999999999999999999999999999987654322110       1111111100    


Q ss_pred             Ce-----e-ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 PV-----I-SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 ~~-----~-~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      ..     + .......                             ..+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus       103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~  182 (233)
T PRK11629        103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD  182 (233)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            00     0 0000000                             01111112899999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+.+.|.++++..+.+++++|||...+
T Consensus       183 ~l~~~l~~~~~~~g~tvii~sH~~~~~  209 (233)
T PRK11629        183 SIFQLLGELNRLQGTAFLVVTHDLQLA  209 (233)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            999999998765578999999987653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=2.4e-22  Score=175.94  Aligned_cols=140  Identities=14%  Similarity=0.108  Sum_probs=101.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----h-------------hHHHHHHHh
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----A-------------AAYEQLLIL  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----~-------------~~~~ql~~~  149 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...    .             ...+.+...
T Consensus        18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~   97 (220)
T cd03293          18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG   97 (220)
T ss_pred             EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998866421    0             111111110


Q ss_pred             ------------------cccCCCCee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881         150 ------------------GKYNDVPVI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI  206 (302)
Q Consensus       150 ------------------~~~~~~~~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l  206 (302)
                                        .+..++.-. . ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~  177 (220)
T cd03293          98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI  177 (220)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence                              011111100 0 00111222333345999999999999999997   999999999999998


Q ss_pred             HHHhchhhccccceeehhhc
Q psy2881         207 KKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       207 ~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+..+.++++++|+...+..
T Consensus       178 ~~~~~~tiii~sH~~~~~~~  197 (220)
T cd03293         178 WRETGKTVLLVTHDIDEAVF  197 (220)
T ss_pred             HHHcCCEEEEEecCHHHHHH
Confidence            76667899999998775443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.88  E-value=5.7e-23  Score=177.98  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=98.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc--------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY--------------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~--------------  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........+.+..+.              
T Consensus        14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l   93 (205)
T cd03226          14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL   93 (205)
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence            478999999999999999999999999999999999999999999988764210000001111111              


Q ss_pred             --------------------CCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         153 --------------------NDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       153 --------------------~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                                          .++.-+...  ......+..+-+||+|++.+|+++|+|||+   |+.+...+++.|+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  173 (205)
T cd03226          94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA  173 (205)
T ss_pred             hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence                                000000000  001112222234999999999999999997   9999999999999987


Q ss_pred             HHhchhhccccceeehhh
Q psy2881         208 KVIEKKIFELPYEIFLII  225 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl  225 (302)
                      +. +.+++++||+...+.
T Consensus       174 ~~-~~tii~~sH~~~~~~  190 (205)
T cd03226         174 AQ-GKAVIVITHDYEFLA  190 (205)
T ss_pred             HC-CCEEEEEeCCHHHHH
Confidence            54 789999999876543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.88  E-value=1.4e-22  Score=177.51  Aligned_cols=138  Identities=14%  Similarity=0.200  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-------HHHHHhcccCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-------EQLLILGKYNDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-------~ql~~~~~~~~~----  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......       ..+.+..+...+    
T Consensus        19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   98 (221)
T TIGR02211        19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF   98 (221)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence            478999999999999999999999999999999999999999999998775432211       011111111110    


Q ss_pred             Ce-----e----ecCCC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 PV-----I----SEKKI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 ~~-----~----~~~~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      .+     +    .....                          ....+..+-+||+|++.+|+++|+|||+   |..+..
T Consensus        99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~  178 (221)
T TIGR02211        99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK  178 (221)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence            00     0    00000                          0001111123999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+.+.|+++.+..+.+++++|||...+
T Consensus       179 ~l~~~l~~~~~~~~~tii~~tH~~~~~  205 (221)
T TIGR02211       179 IIFDLMLELNRELNTSFLVVTHDLELA  205 (221)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            999999999776578999999987654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.88  E-value=1.3e-22  Score=191.81  Aligned_cols=141  Identities=13%  Similarity=0.121  Sum_probs=103.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCCe------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVPV------  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~~------  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+   ++.+..+.....+      
T Consensus        17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e   96 (402)
T PRK09536         17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ   96 (402)
T ss_pred             EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence            5789999999999999999999999999999999999999999999998875432211   1112222211100      


Q ss_pred             ------ee---cCC--CCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         158 ------IS---EKK--ITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       158 ------~~---~~~--~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                            ..   ...  .....                          +..+-.||||++++|+++|||||+   |+.++.
T Consensus        97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~  176 (402)
T PRK09536         97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV  176 (402)
T ss_pred             HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence                  00   000  00001                          111112999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+++.|+++++ .+.++++++||+.++...+
T Consensus       177 ~l~~lL~~l~~-~g~TIIivsHdl~~~~~~a  206 (402)
T PRK09536        177 RTLELVRRLVD-DGKTAVAAIHDLDLAARYC  206 (402)
T ss_pred             HHHHHHHHHHh-cCCEEEEEECCHHHHHHhC
Confidence            99999999986 4789999999988876543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.87  E-value=9.4e-23  Score=186.93  Aligned_cols=141  Identities=18%  Similarity=0.136  Sum_probs=102.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCCe-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVPV-------  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~~-------  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....  ..++.+..+...+..       
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   86 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN   86 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence            47899999999999999999999999999999999999999999999987643211  111222222111100       


Q ss_pred             ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         .....+                             ....+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  166 (302)
T TIGR01188        87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY  166 (302)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence               000000                             0011112223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+. +.+++++||++..+...+
T Consensus       167 l~~~~~~-g~tvi~~sH~~~~~~~~~  191 (302)
T TIGR01188       167 IRALKEE-GVTILLTTHYMEEADKLC  191 (302)
T ss_pred             HHHHHhC-CCEEEEECCCHHHHHHhC
Confidence            9999754 889999999988776543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.87  E-value=1.9e-22  Score=187.41  Aligned_cols=141  Identities=14%  Similarity=0.112  Sum_probs=103.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....                     ..+.
T Consensus        55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~  134 (340)
T PRK13536         55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVREN  134 (340)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHH
Confidence            4789999999999999999999999999999999999999999999998754211                     1111


Q ss_pred             HHHhcccCC------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         146 LLILGKYND------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       146 l~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                      +..++...+                  ++-..  ........+..+-.||+|++.+|+++|+|||+   |+.++..+++.
T Consensus       135 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~  214 (340)
T PRK13536        135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER  214 (340)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence            211111100                  00000  00001111222223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+ .+.+++++||++..+...+
T Consensus       215 l~~l~~-~g~tilisSH~l~e~~~~~  239 (340)
T PRK13536        215 LRSLLA-RGKTILLTTHFMEEAERLC  239 (340)
T ss_pred             HHHHHh-CCCEEEEECCCHHHHHHhC
Confidence            999976 4889999999998776544

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.1e-22  Score=190.20  Aligned_cols=142  Identities=10%  Similarity=0.116  Sum_probs=104.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....                    .+.+
T Consensus        18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi   97 (356)
T PRK11650         18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM   97 (356)
T ss_pred             EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence            47889999999999999999999999999999999999999999999987643221                    1111


Q ss_pred             HHh------------------cccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LIL------------------GKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+.                  .+..++.-+...  ......+..+-+||||++.+|+++|+|||+   |...+..+.+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l  177 (356)
T PRK11650         98 AYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI  177 (356)
T ss_pred             HhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            110                  000111000000  001112223334999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.+..+.+++++|||...+...+
T Consensus       178 ~~l~~~~g~tii~vTHd~~ea~~l~  202 (356)
T PRK11650        178 QRLHRRLKTTSLYVTHDQVEAMTLA  202 (356)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            9998877899999999987666533

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.87  E-value=2.2e-22  Score=175.35  Aligned_cols=139  Identities=16%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~  156 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++......      ..+.+..+...+    .
T Consensus        16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   95 (214)
T TIGR02673        16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT   95 (214)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence            478999999999999999999999999999999999999999999998776432110      111111111100    0


Q ss_pred             e------eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V------ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~------~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +      .....                             .....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~  175 (214)
T TIGR02673        96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER  175 (214)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence            0      00000                             00011122223999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|+++.+ .+.+++++||+...+..
T Consensus       176 l~~~l~~~~~-~~~tii~~tH~~~~~~~  202 (214)
T TIGR02673       176 ILDLLKRLNK-RGTTVIVATHDLSLVDR  202 (214)
T ss_pred             HHHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence            9999999865 37899999998776554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.87  E-value=1.4e-22  Score=189.44  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=104.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-------HHHhcccCCCC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-------LLILGKYNDVP---  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~~~---  156 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.       +.+..+...+.   
T Consensus         7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~   86 (363)
T TIGR01186         7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM   86 (363)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence            47899999999999999999999999999999999999999999999988764332211       11111111100   


Q ss_pred             -ee------ecCCCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 -VI------SEKKIT-----------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 -~~------~~~~~~-----------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                       +.      ....+.                             ...+..+-.||||++.+|+++|+|||+   |+.+..
T Consensus        87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~  166 (363)
T TIGR01186        87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD  166 (363)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence             00      000000                             001111122999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+.+.+.++.+..++|++++|||+..+...+
T Consensus       167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~  197 (363)
T TIGR01186       167 SMQDELKKLQATLQKTIVFITHDLDEAIRIG  197 (363)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            9999999998777899999999998776643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-22  Score=188.12  Aligned_cols=140  Identities=17%  Similarity=0.133  Sum_probs=103.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYNDVP----  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~~~----  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+      .+.+..+...+.    
T Consensus        19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t   98 (343)
T PRK11153         19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence            5789999999999999999999999999999999999999999999998765322111      011111111100    


Q ss_pred             e------eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V------ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~------~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +      ......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~  178 (343)
T PRK11153         99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS  178 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            0      000000                             0111122223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.|+++.+..+.+++++|||+..+..
T Consensus       179 l~~~L~~l~~~~g~tiilvtH~~~~i~~  206 (343)
T PRK11153        179 ILELLKDINRELGLTIVLITHEMDVVKR  206 (343)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            9999999987668899999999887655

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.87  E-value=2.6e-22  Score=177.19  Aligned_cols=140  Identities=17%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......      ..+.+..+...+    .
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT   98 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence            578999999999999999999999999999999999999999999999876432111      111111111110    0


Q ss_pred             e------eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V------ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~------~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +      ......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~  178 (233)
T cd03258          99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS  178 (233)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence            0      000000                             0011111223999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.|.++.+..+.++++++|+...+..
T Consensus       179 l~~~l~~~~~~~~~tvii~sH~~~~~~~  206 (233)
T cd03258         179 ILALLRDINRELGLTIVLITHEMEVVKR  206 (233)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            9999999877667899999998766543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.87  E-value=2.1e-22  Score=174.42  Aligned_cols=136  Identities=16%  Similarity=0.089  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HH----HHHHhcccCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YE----QLLILGKYNDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~----ql~~~~~~~~~----  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+...   .+    .+.+..+...+    
T Consensus        12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   91 (206)
T TIGR03608        12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE   91 (206)
T ss_pred             EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence            57899999999999999999999999999999999999999999999887432110   00    01111111000    


Q ss_pred             Cee------ecC-----------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 PVI------SEK-----------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 ~~~------~~~-----------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      .+.      ...                             ......+..+-.||+|++.+|+++|+|||+   |+.+..
T Consensus        92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~  171 (206)
T TIGR03608        92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD  171 (206)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH
Confidence            000      000                             000111112223999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+.+.|+++.+. +.++++++|+...
T Consensus       172 ~l~~~l~~~~~~-~~tii~~sh~~~~  196 (206)
T TIGR03608       172 EVLDLLLELNDE-GKTIIIVTHDPEV  196 (206)
T ss_pred             HHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence            999999998754 7899999998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.87  E-value=2.7e-22  Score=171.79  Aligned_cols=136  Identities=15%  Similarity=0.168  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----hHHHHHHHhcccCCCCeee--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----AAYEQLLILGKYNDVPVIS--  159 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----~~~~ql~~~~~~~~~~~~~--  159 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+....     .....+.+..+.....++.  
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t   85 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD   85 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence            478999999999999999999999999999999999999999999998765311     0011111111111000000  


Q ss_pred             ---------cCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         160 ---------EKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       160 ---------~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                               ......                             ..+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  165 (190)
T TIGR01166        86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ  165 (190)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                     000000                             01111122999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeeh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +.+.|.++.+. +.++++++||...
T Consensus       166 ~~~~l~~~~~~-~~tili~sH~~~~  189 (190)
T TIGR01166       166 MLAILRRLRAE-GMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHc-CCEEEEEeecccc
Confidence            99999998654 7899999999764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.87  E-value=2.9e-22  Score=169.90  Aligned_cols=134  Identities=15%  Similarity=0.145  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCCeeec----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVPVISE----  160 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~~~~~----  160 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.++|.+......  ...+.+..+...  ++..    
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~tv~~   93 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--LFDTTLRN   93 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe--eecccHHH
Confidence            47899999999999999999999999999999999999999999999876532200  011111111110  1100    


Q ss_pred             --CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         161 --KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       161 --~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                        .......+..+-.||+|++.+|+++|+|||+   |..+...+++.|.++. . +.++++++|+...+
T Consensus        94 ~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~  160 (178)
T cd03247          94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGI  160 (178)
T ss_pred             hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHH
Confidence              1112223445556999999999999999997   8888999999999884 2 78899999987654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.87  E-value=2.8e-22  Score=176.38  Aligned_cols=138  Identities=13%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYNDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~~----  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+........       .+.++.+...+    
T Consensus        24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~  103 (228)
T PRK10584         24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL  103 (228)
T ss_pred             EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence            4789999999999999999999999999999999999999999999987654322110       11111111110    


Q ss_pred             Ce-----e-ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 PV-----I-SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 ~~-----~-~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      ..     + .......                             ..+..+-.||+|++.+|+++|+|||+   |+.+..
T Consensus       104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~  183 (228)
T PRK10584        104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD  183 (228)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            00     0 0000000                             01111112999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+.+.|+++++..+.++++++||...+
T Consensus       184 ~l~~~l~~~~~~~~~tii~~sH~~~~~  210 (228)
T PRK10584        184 KIADLLFSLNREHGTTLILVTHDLQLA  210 (228)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence            999999999776678999999987654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.87  E-value=3e-22  Score=174.38  Aligned_cols=139  Identities=17%  Similarity=0.089  Sum_probs=99.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....      ...+.+..+...+    .
T Consensus        15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   94 (214)
T cd03292          15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN   94 (214)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence            47899999999999999999999999999999999999999999999877543211      0111111111100    0


Q ss_pred             e------eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V------ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~------~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +      .....                             .....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  174 (214)
T cd03292          95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE  174 (214)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence            0      00000                             00011112223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|+++.+. +.++++++|+...+.+
T Consensus       175 ~~~~l~~~~~~-~~tiiivtH~~~~~~~  201 (214)
T cd03292         175 IMNLLKKINKA-GTTVVVATHAKELVDT  201 (214)
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence            99999998654 7899999998766543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=4e-22  Score=163.41  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=106.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCC------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND------------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~------------  154 (302)
                      .+++++++.+++||.++||||+|||||||+..+||+-.|++|+|.+.|++......-..-...+...+            
T Consensus        24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l  103 (228)
T COG4181          24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL  103 (228)
T ss_pred             eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence            47899999999999999999999999999999999999999999999998764332111111111111            


Q ss_pred             -------CCeeecC-CCCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 -------VPVISEK-KITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 -------~~~~~~~-~~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                             +|..-.. ...+..                          +..+-+||||++..|++++.||||   |..+-.
T Consensus       104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~  183 (228)
T COG4181         104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD  183 (228)
T ss_pred             hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence                   1110000 011111                          122234999999999999999998   888999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+.+.|..++++.|.|.+++|||..++-.+
T Consensus       184 ~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc  213 (228)
T COG4181         184 KIADLLFALNRERGTTLVLVTHDPQLAARC  213 (228)
T ss_pred             HHHHHHHHHhhhcCceEEEEeCCHHHHHhh
Confidence            999999999999999999999998886554

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=5.8e-23  Score=172.22  Aligned_cols=148  Identities=17%  Similarity=0.149  Sum_probs=105.1

Q ss_pred             HHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC
Q psy2881          80 LLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN  153 (302)
Q Consensus        80 ~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~  153 (302)
                      .|.+.++  ++.+++||++++||+++|+||||+||||++.++.|+.+|++|+|.+++.|+....-.+.    +.+++|..
T Consensus         9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~   88 (243)
T COG1137           9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEA   88 (243)
T ss_pred             hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccc
Confidence            4445553  58899999999999999999999999999999999999999999999999875443221    12222221


Q ss_pred             CC----Ce------eecCCCCCHH--H-----------------------------HHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         154 DV----PV------ISEKKITDPA--A-----------------------------IAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       154 ~~----~~------~~~~~~~~~~--~-----------------------------~~~~~la~al~~~~~llllDEP~-  191 (302)
                      .+    .+      .......+..  .                             ..+--||||++.+|+++|||||+ 
T Consensus        89 SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFA  168 (243)
T COG1137          89 SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFA  168 (243)
T ss_pred             hHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCcc
Confidence            10    00      0000000110  0                             00011999999999999999996 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                        ||-...++...++.+.+. |..+++..|++...++-+
T Consensus       169 GVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~  206 (243)
T COG1137         169 GVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDIC  206 (243)
T ss_pred             CCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhh
Confidence              999988888888888754 788888999877655543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.87  E-value=4.1e-22  Score=168.60  Aligned_cols=120  Identities=18%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA  167 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~  167 (302)
                      ++++ +|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.++.                  +..+.......
T Consensus        15 ~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~------------------~~~q~~~LSgG   75 (177)
T cd03222          15 LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV------------------YKPQYIDLSGG   75 (177)
T ss_pred             EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE------------------EEcccCCCCHH
Confidence            5566 4899999999999999999999999999999999999999875421                  11111113344


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         168 AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       168 ~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +..+-++|++++.+|+++|+|||+   |+.+...+.+.+.++.+..+.++++++|+...+..
T Consensus        76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~  137 (177)
T cd03222          76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY  137 (177)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            555667999999999999999997   88999999999999876534789999998776543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.1e-22  Score=180.77  Aligned_cols=142  Identities=13%  Similarity=0.122  Sum_probs=104.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----H-HHHHHHhccc---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----A-YEQLLILGKY---------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----~-~~ql~~~~~~---------  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....    . ..++.+..+.         
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  100 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET  100 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence            5899999999999999999999999999999999999999999999987653211    0 0011111111         


Q ss_pred             -----------------------------CCCC---eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         153 -----------------------------NDVP---VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       153 -----------------------------~~~~---~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                   .++.   +... .......+..+-+||+|++.+|+++|+|||+   |+.+.
T Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~  180 (287)
T PRK13637        101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR  180 (287)
T ss_pred             HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence                                         1111   0000 0011122333344999999999999999997   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ..+++.|+++++..+.+++++|||+..+...+
T Consensus       181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~  212 (287)
T PRK13637        181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLA  212 (287)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            99999999998766889999999988765533

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.87  E-value=3.6e-22  Score=174.83  Aligned_cols=140  Identities=17%  Similarity=0.138  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC----Ce---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----PV---  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~~---  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+......  ...+.+..+....    .+   
T Consensus        14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (220)
T cd03265          14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN   93 (220)
T ss_pred             EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence            47899999999999999999999999999999999999999999998876532110  0001111111100    00   


Q ss_pred             ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         ......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...+.+.
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (220)
T cd03265          94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY  173 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence               000000                             0011112223999999999999999998   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |.++.+..+.++++++||...+..
T Consensus       174 l~~~~~~~~~tvi~~tH~~~~~~~  197 (220)
T cd03265         174 IEKLKEEFGMTILLTTHYMEEAEQ  197 (220)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999977657899999998776544

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.87  E-value=4.3e-22  Score=169.48  Aligned_cols=138  Identities=10%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCC-CCeeecCC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYND-VPVISEKK  162 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~-~~~~~~~~  162 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++........    +.+..+... ..++....
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t   94 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS   94 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence            6899999999999999999999999999999999999999999999988754332111    111111110 00111000


Q ss_pred             C---------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         163 I---------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       163 ~---------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .         ....+..+-+||+|++.+|+++|+|||+   |+.+...+.+.|.++.+. +.++++++|+...+.+
T Consensus        95 ~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~  169 (182)
T cd03215          95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLG  169 (182)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            0         1122333445999999999999999997   999999999999998653 7899999998765544

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.7e-21  Score=164.92  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=119.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH---HHhcccCC--CCe----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL---LILGKYND--VPV----  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql---~~~~~~~~--~~~----  157 (302)
                      .+++++||++.+||+.+|+||||+|||||++.|+|.+.|++|+|.++|.+...+.+.+.-   ..+.+...  +||    
T Consensus        15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e   94 (259)
T COG4559          15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE   94 (259)
T ss_pred             eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence            468899999999999999999999999999999999999999999999988766554322   22333322  222    


Q ss_pred             ------eecCCCCC---HHHHHHHH--------------------------HHHHHhC------CCCeEEEcCCC---Cc
Q psy2881         158 ------ISEKKITD---PAAIAFNA--------------------------INIAQKK------NTDIVIVDTSG---RL  193 (302)
Q Consensus       158 ------~~~~~~~~---~~~~~~~~--------------------------la~al~~------~~~llllDEP~---d~  193 (302)
                            .....+.+   ...++.++                          +||.+++      ++.++++|||+   |.
T Consensus        95 VV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi  174 (259)
T COG4559          95 VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI  174 (259)
T ss_pred             HHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccch
Confidence                  11111111   11112221                          7787764      34589999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcCC-------------CC-hhHHHHHHHHHhhcCCCeEEE
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN-------------TG-QNTLSQIKEFSKILRITGLII  251 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~-------------~g-~~~~~~~~~f~~~~~~~~~i~  251 (302)
                      .++...+...+++++. +..++.+-||+.+...++             .| ++.+...+.....|+.+..|-
T Consensus       175 ~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V~  245 (259)
T COG4559         175 AHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRVG  245 (259)
T ss_pred             HHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceeee
Confidence            9999999999999986 578888999999876655             33 366666777777888755444

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.87  E-value=6e-22  Score=175.62  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=101.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.+...      ...+.+..+...+    .
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   94 (241)
T cd03256          15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS   94 (241)
T ss_pred             EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence            57899999999999999999999999999999999999999999999987653221      1111122221110    0


Q ss_pred             e--------ee---------cCCCCCH--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         157 V--------IS---------EKKITDP--------------------------AAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       157 ~--------~~---------~~~~~~~--------------------------~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                      +        ..         .......                          .+..+-+||+|++.+|+++|+|||+  
T Consensus        95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  174 (241)
T cd03256          95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS  174 (241)
T ss_pred             HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            0        00         0000000                          1111112999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+++.|+++.+..+.++++++||...+..
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~  210 (241)
T cd03256         175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE  210 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence             99999999999999987667899999998766543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.87  E-value=4.3e-22  Score=175.44  Aligned_cols=140  Identities=16%  Similarity=0.125  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCCCe-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDVPV-----  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~~~-----  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+    .+.+..+...+..     
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (230)
T TIGR03410        14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE   93 (230)
T ss_pred             EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence            5789999999999999999999999999999999999999999999987764322111    1111122111000     


Q ss_pred             -----eecCCCCC---------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         158 -----ISEKKITD---------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       158 -----~~~~~~~~---------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                           ........                           ..+..+-+||+|++.+|+++|+|||+   |+.+...+.+.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~  173 (230)
T TIGR03410        94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV  173 (230)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence                 00000000                           01111122899999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |.++.+..+.+++++||+...+..
T Consensus       174 l~~~~~~~~~tii~~sH~~~~~~~  197 (230)
T TIGR03410       174 IRRLRAEGGMAILLVEQYLDFARE  197 (230)
T ss_pred             HHHHHHcCCcEEEEEeCCHHHHHH
Confidence            999876557899999998776544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.87  E-value=3.3e-22  Score=177.58  Aligned_cols=140  Identities=18%  Similarity=0.169  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.....      ..++.+..+...+    .
T Consensus        16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (243)
T TIGR02315        16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT   95 (243)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence            47899999999999999999999999999999999999999999999877543211      1111112221110    0


Q ss_pred             e-----eec------------CCCCCHHHHH--------------------------HHHHHHHHhCCCCeEEEcCCC--
Q psy2881         157 V-----ISE------------KKITDPAAIA--------------------------FNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       157 ~-----~~~------------~~~~~~~~~~--------------------------~~~la~al~~~~~llllDEP~--  191 (302)
                      +     +..            .........+                          +-+||+|++.+|+++|+|||+  
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  175 (243)
T TIGR02315        96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS  175 (243)
T ss_pred             HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            0     000            0000000011                          112999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|.++.+..+.+++++||+...+.+
T Consensus       176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~  211 (243)
T TIGR02315       176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK  211 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence             99999999999999876557899999998766543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.4e-22  Score=177.66  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----------------hHHHHHHH-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----------------AAYEQLLI-  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----------------~~~~ql~~-  148 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...                 ...+.+.. 
T Consensus        15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~   94 (255)
T PRK11248         15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG   94 (255)
T ss_pred             eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhH
Confidence            478999999999999999999999999999999999999999999988664211                 11111111 


Q ss_pred             -----------------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881         149 -----------------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI  206 (302)
Q Consensus       149 -----------------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l  206 (302)
                                       +.+..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+.+.|.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  174 (255)
T PRK11248         95 LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL  174 (255)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                             00011110000  00001112223334999999999999999998   999999999999998


Q ss_pred             HHHhchhhccccceeehhhc
Q psy2881         207 KKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       207 ~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+..+.+++++|||...+..
T Consensus       175 ~~~~g~tviivsH~~~~~~~  194 (255)
T PRK11248        175 WQETGKQVLLITHDIEEAVF  194 (255)
T ss_pred             HHhcCCEEEEEeCCHHHHHH
Confidence            66557899999998776544

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.87  E-value=2.2e-22  Score=175.28  Aligned_cols=137  Identities=14%  Similarity=0.179  Sum_probs=98.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV-----------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~-----------  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+...  ....+.+..+....           
T Consensus        13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~e~   90 (213)
T cd03235          13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPISVRDV   90 (213)
T ss_pred             EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH--HHhheEEeccccccccCCCCcHHHH
Confidence            57899999999999999999999999999999999999999999998865420  00011111111000           


Q ss_pred             ---Ceeec-------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         156 ---PVISE-------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       156 ---~~~~~-------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                         +....                               .......+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  170 (213)
T cd03235          91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED  170 (213)
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence               00000                               0000111112223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|+++++ .+.+++++|||...+..
T Consensus       171 l~~~l~~~~~-~~~tvi~~sH~~~~~~~  197 (213)
T cd03235         171 IYELLRELRR-EGMTILVVTHDLGLVLE  197 (213)
T ss_pred             HHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence            9999999876 47899999999776544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.87  E-value=4.2e-22  Score=175.71  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=98.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~-  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.........    +.+..+...+    .+ 
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (232)
T cd03218          14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE   93 (232)
T ss_pred             EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence            47899999999999999999999999999999999999999999999876532211110    1111111100    00 


Q ss_pred             -----eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         158 -----ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       158 -----~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                           ......                             ....+..+-+||+|++.+|+++|+|||+   |..+...++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~  173 (232)
T cd03218          94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ  173 (232)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence                 000000                             0011111223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhc
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.|+++.+ .+.++++++||...+..
T Consensus       174 ~~l~~~~~-~~~tii~~sH~~~~~~~  198 (232)
T cd03218         174 KIIKILKD-RGIGVLITDHNVRETLS  198 (232)
T ss_pred             HHHHHHHH-CCCEEEEEeCCHHHHHH
Confidence            99999875 47899999998765444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.87  E-value=3.9e-22  Score=179.97  Aligned_cols=139  Identities=13%  Similarity=0.123  Sum_probs=99.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCC-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYND-----  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~-----  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.......       ++.+..+...     
T Consensus        38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  117 (269)
T cd03294          38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR  117 (269)
T ss_pred             eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence            4789999999999999999999999999999999999999999999887653221100       0111111100     


Q ss_pred             --------------------------------CCee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 --------------------------------VPVI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 --------------------------------~~~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                      +.-. . ........+..+-+||+|++.+|+++|+|||+   |..+..
T Consensus       118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~  197 (269)
T cd03294         118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR  197 (269)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence                                            0000 0 00000111122223999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+++.|.++.+..+.++++++|+...+.
T Consensus       198 ~l~~~l~~~~~~~g~tiii~tH~~~~~~  225 (269)
T cd03294         198 EMQDELLRLQAELQKTIVFITHDLDEAL  225 (269)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            9999999997655789999999876543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.87  E-value=2.1e-22  Score=177.03  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCC--C---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYND--V---  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~--~---  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....      ..++.+..+...  +   
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   98 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR   98 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence            57899999999999999999999999999999999999999999999877543211      011111111110  0   


Q ss_pred             -Ce-----e---ecCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         156 -PV-----I---SEKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       156 -~~-----~---~~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                       .+     +   .....                              ....+..+-+||+|++.+|+++|+|||+   |+
T Consensus        99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~  178 (228)
T cd03257          99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV  178 (228)
T ss_pred             CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence             00     0   00000                              0001111223999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+...+.+.|.++.+..+.++++++||...+.
T Consensus       179 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  210 (228)
T cd03257         179 SVQAQILDLLKKLQEELGLTLLFITHDLGVVA  210 (228)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            99999999999998755789999999876544

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.6e-22  Score=181.72  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=102.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYN------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~------  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....       ....+.+..+..      
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~  100 (286)
T PRK13646         21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE  100 (286)
T ss_pred             CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence            4899999999999999999999999999999999999999999999987753210       011111111110      


Q ss_pred             --------------------------------CCC-ee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         154 --------------------------------DVP-VI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       154 --------------------------------~~~-~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                      ++. .. . ........+..+-+||+|++.+|+++|+|||+   |+.+
T Consensus       101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~  180 (286)
T PRK13646        101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS  180 (286)
T ss_pred             hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence                                            000 00 0 00001112222334999999999999999997   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ...+++.|+++.+..+.+++++|||...+...
T Consensus       181 ~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~  212 (286)
T PRK13646        181 KRQVMRLLKSLQTDENKTIILVSHDMNEVARY  212 (286)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence            99999999999876688999999998876543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.86  E-value=5e-22  Score=173.97  Aligned_cols=139  Identities=12%  Similarity=0.157  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~~-  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+    .+.+..+...+    .+ 
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   93 (222)
T cd03224          14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE   93 (222)
T ss_pred             eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence            5789999999999999999999999999999999999999999999987654322111    11111111100    00 


Q ss_pred             -----eecCC-CC---------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881         158 -----ISEKK-IT---------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR  201 (302)
Q Consensus       158 -----~~~~~-~~---------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~  201 (302)
                           ..... ..                           ...+..+-+||+|++.+|+++|+|||+   |..+...+++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  173 (222)
T cd03224          94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE  173 (222)
T ss_pred             HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence                 00000 00                           001111123899999999999999997   9999999999


Q ss_pred             HHHHHHHHhchhhccccceeehhhc
Q psy2881         202 ELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       202 ~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .|+++.+ .+.++++++||...+..
T Consensus       174 ~l~~~~~-~~~tiii~sH~~~~~~~  197 (222)
T cd03224         174 AIRELRD-EGVTILLVEQNARFALE  197 (222)
T ss_pred             HHHHHHH-CCCEEEEEeCCHHHHHH
Confidence            9999876 57899999998765443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.86  E-value=5.3e-22  Score=174.01  Aligned_cols=139  Identities=14%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......      ..+.+..+....    .
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   95 (222)
T PRK10908         16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT   95 (222)
T ss_pred             eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence            478999999999999999999999999999999999999999999998775432111      111111111110    0


Q ss_pred             e-----eec-CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V-----ISE-KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~-----~~~-~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +     +.. .....                             ..+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (222)
T PRK10908         96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG  175 (222)
T ss_pred             HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence            0     000 00000                             01111223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.|.++.+. +.+++++|||...+..
T Consensus       176 l~~~l~~~~~~-~~tiii~sH~~~~~~~  202 (222)
T PRK10908        176 ILRLFEEFNRV-GVTVLMATHDIGLISR  202 (222)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            99999998654 7899999998776543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.86  E-value=9e-22  Score=176.36  Aligned_cols=142  Identities=10%  Similarity=0.030  Sum_probs=101.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-----------------hhHHHHHHH-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-----------------AAAYEQLLI-  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-----------------~~~~~ql~~-  148 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+...                 ....+.+.. 
T Consensus        26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~  105 (257)
T PRK11247         26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG  105 (257)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence            47899999999999999999999999999999999999999999987654210                 011111110 


Q ss_pred             -----------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881         149 -----------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK  212 (302)
Q Consensus       149 -----------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~  212 (302)
                                 +.+..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.+..+.
T Consensus       106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~  185 (257)
T PRK11247        106 LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF  185 (257)
T ss_pred             ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence                       01111111000  00011122333334999999999999999998   999999999999998766678


Q ss_pred             hhccccceeehhhcCC
Q psy2881         213 KIFELPYEIFLIIDGN  228 (302)
Q Consensus       213 ~i~~~~hd~~lvl~~~  228 (302)
                      +++++|||...+...+
T Consensus       186 tviivsHd~~~~~~~~  201 (257)
T PRK11247        186 TVLLVTHDVSEAVAMA  201 (257)
T ss_pred             EEEEEeCCHHHHHHhC
Confidence            9999999987655433

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.6e-22  Score=179.91  Aligned_cols=141  Identities=16%  Similarity=0.111  Sum_probs=102.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC--C------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--V------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--~------  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+   ++.+..+...  +      
T Consensus        19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   98 (274)
T PRK13647         19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW   98 (274)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence            4789999999999999999999999999999999999999999999997764221111   1111111100  0      


Q ss_pred             ---CeeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         156 ---PVISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       156 ---~~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                         .+........                             ..+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus        99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~  178 (274)
T PRK13647         99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM  178 (274)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence               0000000000                             11111223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.|+++++. +.+++++|||+..+...+
T Consensus       179 ~~l~~~~~~-g~tili~tH~~~~~~~~~  205 (274)
T PRK13647        179 EILDRLHNQ-GKTVIVATHDVDLAAEWA  205 (274)
T ss_pred             HHHHHHHHC-CCEEEEEeCCHHHHHHhC
Confidence            999999764 889999999988775543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.86  E-value=5.7e-22  Score=172.53  Aligned_cols=139  Identities=13%  Similarity=0.105  Sum_probs=99.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--hH---HHHHHHhcccCCC----Ce
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--AA---YEQLLILGKYNDV----PV  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~~----~~  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...  ..   ...+.+..+....    .+
T Consensus        14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   93 (213)
T cd03262          14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV   93 (213)
T ss_pred             EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence            478999999999999999999999999999999999999999999998776321  00   1111111111110    00


Q ss_pred             ------eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         158 ------ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       158 ------~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                            ... ...                             ....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~  173 (213)
T cd03262          94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE  173 (213)
T ss_pred             HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence                  000 000                             0011111123899999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|.++.+ .+.++++++|+...+.+
T Consensus       174 l~~~l~~~~~-~~~tvi~~sh~~~~~~~  200 (213)
T cd03262         174 VLDVMKDLAE-EGMTMVVVTHEMGFARE  200 (213)
T ss_pred             HHHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence            9999999976 47899999998776544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=174.16  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---------------------HHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---------------------YEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---------------------~~q  145 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....                     .+.
T Consensus        17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~   96 (241)
T PRK14250         17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDN   96 (241)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHH
Confidence            47899999999999999999999999999999999999999999999876532110                     000


Q ss_pred             HH--------------HhcccCCCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         146 LL--------------ILGKYNDVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       146 l~--------------~~~~~~~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                      +.              .+.+..++.  .... .......+..+-+||+|++.+|+++|+|||+   |..+...+.+.|++
T Consensus        97 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250         97 IEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK  176 (241)
T ss_pred             HhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            00              000011111  0000 0011122233334999999999999999997   89999999999999


Q ss_pred             HHHHhchhhccccceeehhhc
Q psy2881         206 IKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+..+.+++++|||...+..
T Consensus       177 ~~~~~g~tii~~sH~~~~~~~  197 (241)
T PRK14250        177 LKNKMNLTVIWITHNMEQAKR  197 (241)
T ss_pred             HHHhCCCEEEEEeccHHHHHH
Confidence            876557899999998776543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.86  E-value=2.8e-22  Score=177.71  Aligned_cols=139  Identities=11%  Similarity=0.067  Sum_probs=99.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH-HHHHHHhcccCCC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA-YEQLLILGKYNDV----------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~-~~ql~~~~~~~~~----------  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+... ..++.+..+...+          
T Consensus        16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l   95 (239)
T cd03296          16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV   95 (239)
T ss_pred             EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence            57899999999999999999999999999999999999999999998876432110 0001111111000          


Q ss_pred             CeeecC---------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         156 PVISEK---------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       156 ~~~~~~---------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                      .+....                                 ......+..+-+||+|++.+|+++|+|||+   |+.+...+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l  175 (239)
T cd03296          96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL  175 (239)
T ss_pred             hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            000000                                 000111122223999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhh
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ++.|.++++..+.++++++|+...+.
T Consensus       176 ~~~l~~~~~~~~~tvii~sH~~~~~~  201 (239)
T cd03296         176 RRWLRRLHDELHVTTVFVTHDQEEAL  201 (239)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            99999998755789999999876543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.86  E-value=4e-22  Score=186.18  Aligned_cols=142  Identities=14%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+......                    .+.+
T Consensus        18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi   97 (353)
T TIGR03265        18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI   97 (353)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence            46889999999999999999999999999999999999999999999977642111                    1111


Q ss_pred             HH------------------hcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+                  +.+.+++.-+...  ......+..+-+||||++.+|+++|+|||+   |...+..+.+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  177 (353)
T TIGR03265        98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI  177 (353)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            11                  1111111110000  001122333345999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.+..+.+++++|||...+...+
T Consensus       178 ~~l~~~~~~tvi~vTHd~~ea~~l~  202 (353)
T TIGR03265       178 RQLQRRLGVTTIMVTHDQEEALSMA  202 (353)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhC
Confidence            9998877899999999998776543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.2e-22  Score=185.75  Aligned_cols=142  Identities=11%  Similarity=0.097  Sum_probs=105.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.....                    .+.+
T Consensus        20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi   99 (351)
T PRK11432         20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV   99 (351)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence            46889999999999999999999999999999999999999999999977542211                    1111


Q ss_pred             HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+                  +.+..++.-+..  .......+..+-+||||++.+|+++|+|||+   |...+..+.+.|
T Consensus       100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  179 (351)
T PRK11432        100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI  179 (351)
T ss_pred             HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            10                  111111110000  0011122333345999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.+..+.+++++|||...+...+
T Consensus       180 ~~l~~~~g~tii~vTHd~~e~~~la  204 (351)
T PRK11432        180 RELQQQFNITSLYVTHDQSEAFAVS  204 (351)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhC
Confidence            9998877899999999998776543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.86  E-value=6e-22  Score=171.92  Aligned_cols=139  Identities=14%  Similarity=0.078  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH-HHHHHHhcccCCCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA-YEQLLILGKYNDVP---------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~-~~ql~~~~~~~~~~---------  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ...+.+..+...+.         
T Consensus        14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   93 (208)
T cd03268          14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL   93 (208)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence            57899999999999999999999999999999999999999999999877542100 00111111111000         


Q ss_pred             -eeecCCC-------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         157 -VISEKKI-------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       157 -~~~~~~~-------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                       +......                         ....+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  173 (208)
T cd03268          94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR  173 (208)
T ss_pred             HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence             0000000                         0011111223999999999999999998   9999999999999987


Q ss_pred             HHhchhhccccceeehhhc
Q psy2881         208 KVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~  226 (302)
                      + .+.++++++||...+..
T Consensus       174 ~-~~~tii~~tH~~~~~~~  191 (208)
T cd03268         174 D-QGITVLISSHLLSEIQK  191 (208)
T ss_pred             H-CCCEEEEEcCCHHHHHH
Confidence            6 57899999998776543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.86  E-value=1.3e-21  Score=173.74  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----------------------HHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----------------------AYE  144 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----------------------~~~  144 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....                      ..+
T Consensus        15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   94 (242)
T cd03295          15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE   94 (242)
T ss_pred             eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence            4789999999999999999999999999999999999999999999887643211                      111


Q ss_pred             HHHHh------------------cccCCCCe--e-ec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         145 QLLIL------------------GKYNDVPV--I-SE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       145 ql~~~------------------~~~~~~~~--~-~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                      .+...                  .+.+++.-  . .. .......+..+-+||+|++.+|+++|+|||+   |+.+...+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  174 (242)
T cd03295          95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL  174 (242)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence            11110                  01111110  0 00 0001112233344999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhc
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ++.|.++.+..+.+++++||+...+..
T Consensus       175 ~~~L~~~~~~~g~tvii~sH~~~~~~~  201 (242)
T cd03295         175 QEEFKRLQQELGKTIVFVTHDIDEAFR  201 (242)
T ss_pred             HHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence            999999977557899999998765443

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.1e-22  Score=187.66  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=102.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCCCC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYNDVP---  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~~~---  156 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+       .+.+..+...+.   
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            3689999999999999999999999999999999999999999999998765322111       011111111100   


Q ss_pred             -------eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 -------VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 -------~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                             +......                             ....+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~  201 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT  201 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence                   0000000                             0011112223999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+++.|.++.+..+++++++|||...+...
T Consensus       202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~  231 (400)
T PRK10070        202 EMQDELVKLQAKHQRTIVFISHDLDEAMRI  231 (400)
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence            999999999876688999999998876553

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.86  E-value=9.1e-22  Score=172.98  Aligned_cols=138  Identities=11%  Similarity=0.097  Sum_probs=99.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~-----------  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+....   ..+.+..+.           
T Consensus        21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en  100 (225)
T PRK10247         21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN  100 (225)
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHH
Confidence            578999999999999999999999999999999999999999999998765322110   001111111           


Q ss_pred             -----------------------CCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         153 -----------------------NDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       153 -----------------------~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                                             .++.  ... ........+..+-.||+|++.+|+++|+|||+   |+.+...+.+.|
T Consensus       101 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (225)
T PRK10247        101 LIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII  180 (225)
T ss_pred             HHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence                                   0110  000 00001112222234999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehh
Q psy2881         204 KKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .++.+..+.++++++|+...+
T Consensus       181 ~~~~~~~~~tvii~sh~~~~~  201 (225)
T PRK10247        181 HRYVREQNIAVLWVTHDKDEI  201 (225)
T ss_pred             HHHHHhcCCEEEEEECChHHH
Confidence            998876678999999987664

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.86  E-value=8.5e-22  Score=171.21  Aligned_cols=138  Identities=16%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC------------------hhHHHHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR------------------AAAYEQLLI  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~------------------~~~~~ql~~  148 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..                  ....+.+..
T Consensus        14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~   93 (210)
T cd03269          14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVY   93 (210)
T ss_pred             EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHH
Confidence            47899999999999999999999999999999999999999999998866421                  011121111


Q ss_pred             hcc------------------cCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         149 LGK------------------YNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       149 ~~~------------------~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                      ...                  ..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+.+.|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~  173 (210)
T cd03269          94 LAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE  173 (210)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            110                  01110000  00001112222334999999999999999997   99999999999999


Q ss_pred             HHHHhchhhccccceeehhh
Q psy2881         206 IKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +.+. +.++++++|+...+.
T Consensus       174 ~~~~-~~tii~~sH~~~~~~  192 (210)
T cd03269         174 LARA-GKTVILSTHQMELVE  192 (210)
T ss_pred             HHHC-CCEEEEECCCHHHHH
Confidence            8754 789999999876543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.86  E-value=1.2e-21  Score=173.32  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=100.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND----------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~----------  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.....  ...+.+..+...          
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~   94 (236)
T TIGR03864        15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQN   94 (236)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHH
Confidence            47899999999999999999999999999999999999999999998876532111  001111111100          


Q ss_pred             ---------------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         155 ---------------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       155 ---------------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                                                 +.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~  174 (236)
T TIGR03864        95 LRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAH  174 (236)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence                                       00000  00001111222223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhh
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      |.++.+..+.++++++|+...+.
T Consensus       175 l~~~~~~~~~tiii~sH~~~~~~  197 (236)
T TIGR03864       175 VRALCRDQGLSVLWATHLVDEIE  197 (236)
T ss_pred             HHHHHHhCCCEEEEEecChhhHh
Confidence            99987655789999999887653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.86  E-value=8e-22  Score=172.51  Aligned_cols=138  Identities=14%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC----e---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP----V---  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~----~---  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....  ...+.+..+...+.    +   
T Consensus        16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   95 (220)
T cd03263          16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH   95 (220)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence            57899999999999999999999999999999999999999999999877542110  00011111111000    0   


Q ss_pred             ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         ......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~  175 (220)
T cd03263          96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL  175 (220)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence               000000                             0011111223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |+++.+  +.++++++|+...+..
T Consensus       176 l~~~~~--~~tii~~sH~~~~~~~  197 (220)
T cd03263         176 ILEVRK--GRSIILTTHSMDEAEA  197 (220)
T ss_pred             HHHHhc--CCEEEEEcCCHHHHHH
Confidence            999865  4789999998776543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.86  E-value=1e-21  Score=180.14  Aligned_cols=141  Identities=12%  Similarity=0.080  Sum_probs=101.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC----e---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP----V---  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~----~---  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+......  ..++.+..+...+.    +   
T Consensus        18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   97 (303)
T TIGR01288        18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN   97 (303)
T ss_pred             EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence            47899999999999999999999999999999999999999999999876532110  01111111111100    0   


Q ss_pred             ---eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         158 ---ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       158 ---~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         ......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  177 (303)
T TIGR01288        98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER  177 (303)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence               000000                             0111122223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+ .+.+++++|||...+...+
T Consensus       178 l~~~~~-~g~til~~sH~~~~~~~~~  202 (303)
T TIGR01288       178 LRSLLA-RGKTILLTTHFMEEAERLC  202 (303)
T ss_pred             HHHHHh-CCCEEEEECCCHHHHHHhC
Confidence            999875 4889999999988776543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.86  E-value=1.6e-21  Score=168.50  Aligned_cols=142  Identities=15%  Similarity=0.069  Sum_probs=101.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND----------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~----------  154 (302)
                      .+++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+......  ..++.++.+...          
T Consensus        14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   93 (201)
T cd03231          14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN   93 (201)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHH
Confidence            46899999999999999999999999999999999999999999998877532111  011111111110          


Q ss_pred             ---------------------CCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         155 ---------------------VPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       155 ---------------------~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                                           +.-...  .......+..+-++|+|++.+|+++|+|||+   |+.....+++.|.++.+
T Consensus        94 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  173 (201)
T cd03231          94 LRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA  173 (201)
T ss_pred             HHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence                                 000000  0000112222234999999999999999997   99999999999998865


Q ss_pred             HhchhhccccceeehhhcCCC
Q psy2881         209 VIEKKIFELPYEIFLIIDGNT  229 (302)
Q Consensus       209 ~~~~~i~~~~hd~~lvl~~~~  229 (302)
                      . +.++++++|+.....++++
T Consensus       174 ~-g~tiii~sH~~~~~~~~~~  193 (201)
T cd03231         174 R-GGMVVLTTHQDLGLSEAGA  193 (201)
T ss_pred             C-CCEEEEEecCchhhhhccc
Confidence            4 7899999998877666553

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.86  E-value=8.6e-22  Score=172.10  Aligned_cols=139  Identities=16%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC----Ce---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----PV---  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~~---  157 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++.....  ..++.+..+...+    .+   
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   98 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN   98 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence            57899999999999999999999999999999999999999999999876542110  0111111111100    00   


Q ss_pred             ---eecCCCC-----------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         158 ---ISEKKIT-----------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       158 ---~~~~~~~-----------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         .......                             ...+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~  178 (218)
T cd03266          99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF  178 (218)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence               0000000                             001111122999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |.++.+ .+.++++++|+...+..
T Consensus       179 l~~~~~-~~~tii~~tH~~~~~~~  201 (218)
T cd03266         179 IRQLRA-LGKCILFSTHIMQEVER  201 (218)
T ss_pred             HHHHHH-CCCEEEEEeCCHHHHHH
Confidence            999865 37899999998776543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.86  E-value=5.7e-22  Score=170.44  Aligned_cols=135  Identities=16%  Similarity=0.089  Sum_probs=100.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eee-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VIS-  159 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~-  159 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|++  +|.+|+|.++|.++........+.+..+.....    +.. 
T Consensus        23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~  102 (194)
T cd03213          23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET  102 (194)
T ss_pred             cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH
Confidence            5789999999999999999999999999999999999  999999999998764311111111111111100    000 


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         160 -----EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       160 -----~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                           ........+..+-+||+|++.+|+++|+|||+   |..+...+.+.|.++.+. +.++++++|+..
T Consensus       103 i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~  172 (194)
T cd03213         103 LMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPS  172 (194)
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCch
Confidence                 00012233344456999999999999999997   999999999999998654 789999999875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=5.6e-22  Score=186.34  Aligned_cols=141  Identities=11%  Similarity=0.138  Sum_probs=103.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....                    .+.+
T Consensus        17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni   96 (369)
T PRK11000         17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM   96 (369)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence            47899999999999999999999999999999999999999999998876532111                    1111


Q ss_pred             HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      ..                  +.+..++.-...  .......+..+-+||||++.+|+++|+|||+   |......+++.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L  176 (369)
T PRK11000         97 SFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  176 (369)
T ss_pred             HhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11                  000111110000  0001112233334999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++.+..+.+++++|||...+...
T Consensus       177 ~~l~~~~g~tvI~vTHd~~~~~~~  200 (369)
T PRK11000        177 SRLHKRLGRTMIYVTHDQVEAMTL  200 (369)
T ss_pred             HHHHHHhCCEEEEEeCCHHHHHHh
Confidence            999876688999999998766543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=7.9e-22  Score=171.22  Aligned_cols=139  Identities=16%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCC------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND------------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~------------  154 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+........+..++.+...            
T Consensus        16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~   95 (207)
T PRK13539         16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE   95 (207)
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence            47899999999999999999999999999999999999999999998876421111111111111110            


Q ss_pred             ---------------------CCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         155 ---------------------VPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       155 ---------------------~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                                           +......  ......+..+-+||+|++.+|+++|+|||+   |..+...+++.|.++.+
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  175 (207)
T PRK13539         96 FWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA  175 (207)
T ss_pred             HHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence                                 0000000  000111222233999999999999999997   99999999999999866


Q ss_pred             Hhchhhccccceeehhhc
Q psy2881         209 VIEKKIFELPYEIFLIID  226 (302)
Q Consensus       209 ~~~~~i~~~~hd~~lvl~  226 (302)
                      . +.++++++|+...+..
T Consensus       176 ~-~~tiii~sH~~~~~~~  192 (207)
T PRK13539        176 Q-GGIVIAATHIPLGLPG  192 (207)
T ss_pred             C-CCEEEEEeCCchhhcc
Confidence            4 8899999999876543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=9.4e-22  Score=170.34  Aligned_cols=139  Identities=17%  Similarity=0.105  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccC-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYN-----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~-----------  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....  ..++.++.+..           
T Consensus        15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~   94 (204)
T PRK13538         15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN   94 (204)
T ss_pred             EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHH
Confidence            47899999999999999999999999999999999999999999999876532110  01111111110           


Q ss_pred             -----------------------CCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         154 -----------------------DVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       154 -----------------------~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                                             ++.-...  .......+..+-+||+|++.+|+++|+|||+   |+.+...+++.|++
T Consensus        95 l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  174 (204)
T PRK13538         95 LRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ  174 (204)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence                                   0000000  0000111222223999999999999999997   99999999999999


Q ss_pred             HHHHhchhhccccceeehhhc
Q psy2881         206 IKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+ .+.+++++|||..++-.
T Consensus       175 ~~~-~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        175 HAE-QGGMVILTTHQDLPVAS  194 (204)
T ss_pred             HHH-CCCEEEEEecChhhhcc
Confidence            865 37899999999877644

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.9e-22  Score=178.50  Aligned_cols=138  Identities=16%  Similarity=0.178  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+   .+.+..+...         
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  100 (279)
T PRK13650         21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE  100 (279)
T ss_pred             eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence            4789999999999999999999999999999999999999999999998764322111   1111111100         


Q ss_pred             --CCeeecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         155 --VPVISEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       155 --~~~~~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                        +.+.....+...                             .+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus       101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~  180 (279)
T PRK13650        101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI  180 (279)
T ss_pred             HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence              000000000011                             1111122999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehh
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +.|.++++..+.+++++|||...+
T Consensus       181 ~~l~~l~~~~g~tilivtH~~~~~  204 (279)
T PRK13650        181 KTIKGIRDDYQMTVISITHDLDEV  204 (279)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHH
Confidence            999999876688999999987765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.86  E-value=1.6e-21  Score=172.71  Aligned_cols=142  Identities=16%  Similarity=0.126  Sum_probs=100.2

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhc-ccCCCC----e-
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILG-KYNDVP----V-  157 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~-~~~~~~----~-  157 (302)
                      +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.+......  ..++.++. +...+.    . 
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~  113 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI  113 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence            358999999999999999999999999999999999999999999998865421110  00111111 100000    0 


Q ss_pred             -----eecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         158 -----ISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       158 -----~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                           ......                             ....+..+-.+|+|++.+|+++|+|||+   |+.+...+.
T Consensus       114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  193 (236)
T cd03267         114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR  193 (236)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence                 000000                             0011111223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhcC
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +.|.++.+..+.++++++|+...+...
T Consensus       194 ~~l~~~~~~~~~tiiivsH~~~~~~~~  220 (236)
T cd03267         194 NFLKEYNRERGTTVLLTSHYMKDIEAL  220 (236)
T ss_pred             HHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence            999999766578999999997765443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.2e-21  Score=183.93  Aligned_cols=142  Identities=15%  Similarity=0.138  Sum_probs=101.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc----cCCChhHHH--H-----HHHhcccCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC----DTFRAAAYE--Q-----LLILGKYNDV  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~----d~~~~~~~~--q-----l~~~~~~~~~  155 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.    ++......+  .     +.+..+...+
T Consensus        38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l  117 (382)
T TIGR03415        38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL  117 (382)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence            4689999999999999999999999999999999999999999999885    332211110  0     1111111110


Q ss_pred             -C---e-----ee-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         156 -P---V-----IS-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       156 -~---~-----~~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                       +   +     +. ...+                             ....+..+-.||||++.+|+++|+|||+   |+
T Consensus       118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~  197 (382)
T TIGR03415       118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP  197 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence             0   0     00 0000                             0011111223999999999999999997   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .....+.+.|.++.+..+.|++++|||...+...+
T Consensus       198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~  232 (382)
T TIGR03415       198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIG  232 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            99999999999998767899999999998776543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.86  E-value=1.7e-21  Score=172.18  Aligned_cols=139  Identities=13%  Similarity=0.154  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~-  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.........    +.+..+...+    .+ 
T Consensus        14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (236)
T cd03219          14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL   93 (236)
T ss_pred             EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence            47899999999999999999999999999999999999999999999876543221110    1111111110    00 


Q ss_pred             -----eecCC-C--------------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         158 -----ISEKK-I--------------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       158 -----~~~~~-~--------------------------------------~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                           ..... .                                      ....+..+-+||+|++.+|+++|+|||+  
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  173 (236)
T cd03219          94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG  173 (236)
T ss_pred             HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence                 00000 0                                      0001111123999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |..+...+++.|+++.+ .+.++++++||...+..
T Consensus       174 LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~  208 (236)
T cd03219         174 LNPEETEELAELIRELRE-RGITVLLVEHDMDVVMS  208 (236)
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHH
Confidence             99999999999999876 57899999998776543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=8.1e-22  Score=176.13  Aligned_cols=140  Identities=10%  Similarity=0.096  Sum_probs=100.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------H-HHHHHHhc
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------A-YEQLLILG  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------~-~~ql~~~~  150 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++....               . ...+.+..
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   93 (252)
T TIGR03005        14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF   93 (252)
T ss_pred             eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence            4789999999999999999999999999999999999999999999987664211               0 00111111


Q ss_pred             ccCCC----Ce-----eec--CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         151 KYNDV----PV-----ISE--KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       151 ~~~~~----~~-----~~~--~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                      +....    .+     +..  ...                             ....+..+-+||+|++.+|+++|+|||
T Consensus        94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  173 (252)
T TIGR03005        94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV  173 (252)
T ss_pred             cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            11100    00     000  000                             001111112399999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +   |+.+...+.+.|+++.+..+.+++++||+...+.+
T Consensus       174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~  212 (252)
T TIGR03005       174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE  212 (252)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence            7   89899999999999887668899999998776544

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.8e-22  Score=179.48  Aligned_cols=141  Identities=11%  Similarity=0.072  Sum_probs=102.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----hhH---HHHHHHhccc-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----AAA---YEQLLILGKY-------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----~~~---~~ql~~~~~~-------  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..    ...   ...+.+..+.       
T Consensus        21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~  100 (290)
T PRK13634         21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE  100 (290)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence            48999999999999999999999999999999999999999999999976531    000   0001111111       


Q ss_pred             -------------------------------CCCC-ee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         153 -------------------------------NDVP-VI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       153 -------------------------------~~~~-~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                     .++. .. . ........+..+-+||+|++.+|+++|+|||+   |+.+
T Consensus       101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~  180 (290)
T PRK13634        101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG  180 (290)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence                                           1110 00 0 00001112223334999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ...+++.|+++.+..+.+++++|||+..+...
T Consensus       181 ~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~  212 (290)
T PRK13634        181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY  212 (290)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            99999999999876688999999998876543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.86  E-value=2.2e-21  Score=171.17  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=99.6

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----------------hHHHHHHHhc-
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----------------AAYEQLLILG-  150 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----------------~~~~ql~~~~-  150 (302)
                      ++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...                 ...+.+.... 
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~   80 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD   80 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999988764321                 1112221110 


Q ss_pred             -------------------ccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881         151 -------------------KYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI  206 (302)
Q Consensus       151 -------------------~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l  206 (302)
                                         +.+++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  160 (230)
T TIGR01184        81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI  160 (230)
T ss_pred             hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence                               000110000  00001112222334999999999999999997   999999999999999


Q ss_pred             HHHhchhhccccceeehhhcC
Q psy2881         207 KKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       207 ~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+..+.+++++|||...+...
T Consensus       161 ~~~~~~tii~~sH~~~~~~~~  181 (230)
T TIGR01184       161 WEEHRVTVLMVTHDVDEALLL  181 (230)
T ss_pred             HHhcCCEEEEEeCCHHHHHHh
Confidence            876678999999987765443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.1e-22  Score=178.78  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=102.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~---------  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+   .+.+..+...         
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~  100 (279)
T PRK13635         21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ  100 (279)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence            4789999999999999999999999999999999999999999999998764322111   1111111110         


Q ss_pred             --CCeeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         155 --VPVISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       155 --~~~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                        +.+........                             ..+..+-+||+|++.+|++||+|||+   |+.+...++
T Consensus       101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~  180 (279)
T PRK13635        101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL  180 (279)
T ss_pred             HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence              00000000001                             01111122999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhc
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.|.++.+..+.++++++||...+..
T Consensus       181 ~~l~~l~~~~~~tilivsH~~~~~~~  206 (279)
T PRK13635        181 ETVRQLKEQKGITVLSITHDLDEAAQ  206 (279)
T ss_pred             HHHHHHHHcCCCEEEEEecCHHHHHc
Confidence            99999987668899999999877653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.7e-21  Score=176.58  Aligned_cols=142  Identities=14%  Similarity=0.110  Sum_probs=102.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCee-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVI-----  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~-----  158 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   .++.+..+.....++     
T Consensus        18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   97 (277)
T PRK13652         18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE   97 (277)
T ss_pred             ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence            378999999999999999999999999999999999999999999998875432111   111111111100000     


Q ss_pred             ------ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         159 ------SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       159 ------~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                            ......+                             ..+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~  177 (277)
T PRK13652         98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI  177 (277)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence                  0000001                             11112223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.|+++.+..+.+++++||+...+...+
T Consensus       178 ~~l~~l~~~~g~tvli~tH~~~~~~~~~  205 (277)
T PRK13652        178 DFLNDLPETYGMTVIFSTHQLDLVPEMA  205 (277)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence            9999998765789999999988776543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.85  E-value=7.9e-22  Score=185.28  Aligned_cols=142  Identities=14%  Similarity=0.170  Sum_probs=104.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....                    .+.+
T Consensus        28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi  107 (375)
T PRK09452         28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV  107 (375)
T ss_pred             EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence            46889999999999999999999999999999999999999999999987643211                    1111


Q ss_pred             HH------------------hcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+                  +.+..++.-+...  ......+..+-+||||++.+|+++|+|||+   |...+..+.+.|
T Consensus       108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  187 (375)
T PRK09452        108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL  187 (375)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            10                  0001111100000  001112223334999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.+..+.+++++|||...+...+
T Consensus       188 ~~l~~~~g~tiI~vTHd~~ea~~la  212 (375)
T PRK09452        188 KALQRKLGITFVFVTHDQEEALTMS  212 (375)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            9998877899999999988766533

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.85  E-value=1.4e-21  Score=169.96  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCC----------CCeee
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYND----------VPVIS  159 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~----------~~~~~  159 (302)
                      ++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+.+..+...          +.+..
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~   95 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL   95 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence            89999999999999999999999999999999999999999998765321110 01111111100          00000


Q ss_pred             cC--C---------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         160 EK--K---------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       160 ~~--~---------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                      ..  .                           .....+..+-+||+|++.+|+++|+|||+   |..+...+++.|+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  175 (211)
T cd03298          96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH  175 (211)
T ss_pred             ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            00  0                           00111112223999999999999999997   9999999999999997


Q ss_pred             HHhchhhccccceeehhhc
Q psy2881         208 KVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~  226 (302)
                      +..+.+++++||+...+..
T Consensus       176 ~~~~~tii~~sH~~~~~~~  194 (211)
T cd03298         176 AETKMTVLMVTHQPEDAKR  194 (211)
T ss_pred             HhcCCEEEEEecCHHHHHh
Confidence            7668899999998876544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.85  E-value=1.3e-21  Score=160.47  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=93.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDP  166 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~  166 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++..                 .+.+..+   ...
T Consensus        14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-----------------~i~~~~~---lS~   73 (144)
T cd03221          14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-----------------KIGYFEQ---LSG   73 (144)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-----------------EEEEEcc---CCH
Confidence            47889999999999999999999999999999999999999999997630                 1222222   334


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+..+-+||+|++.+|+++|+|||+   |..+...+.+.++++    +.++++++|+...+.
T Consensus        74 G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~  131 (144)
T cd03221          74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLD  131 (144)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHH
Confidence            4455566999999999999999997   888888888888765    468899999876553

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=8.3e-22  Score=182.32  Aligned_cols=141  Identities=13%  Similarity=0.149  Sum_probs=102.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHHHHHH-------Hhccc---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAYEQLL-------ILGKY---  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~~ql~-------~~~~~---  152 (302)
                      .+++|+||++.+|++++|+|+||||||||++.|+|++++    ++|+|.+.|.++......+..+       +..+.   
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  100 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT  100 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence            479999999999999999999999999999999999973    7899999998865432211100       01111   


Q ss_pred             -------------------------------------CCCCe----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         153 -------------------------------------NDVPV----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       153 -------------------------------------~~~~~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                                           .+++-    .. ........+..+-+||+|++.+|++||+|||
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP  180 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP  180 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                                                 00000    00 0000011112222399999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +   |..++..+++.|+++.+..+.+++++|||+..+...
T Consensus       181 ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~  220 (326)
T PRK11022        181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEA  220 (326)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            8   999999999999999887788999999998876543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.85  E-value=3.7e-21  Score=161.43  Aligned_cols=123  Identities=17%  Similarity=0.149  Sum_probs=93.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------C--CChhHHHHHHHhcccCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------T--FRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~--~~~~~~~ql~~~~~~~~~~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+..        .  +.....+.+...       
T Consensus        15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-------   87 (166)
T cd03223          15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP-------   87 (166)
T ss_pred             eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc-------
Confidence            47899999999999999999999999999999999999999999886531        0  000111111110       


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                         ........+..+-++|+|++.+|+++|+|||+   |+.+...+.+.|.++    +.+++++|||..+
T Consensus        88 ---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~  150 (166)
T cd03223          88 ---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSL  150 (166)
T ss_pred             ---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhH
Confidence               11223344555667999999999999999997   888888888888765    5789999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.85  E-value=1.2e-21  Score=169.22  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=101.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhHHHH----HHHhcccCCC-C---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV-P---  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~-~---  156 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+  ++|++|+|.++|.++........    +.+..+.... +   
T Consensus        14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   93 (200)
T cd03217          14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK   93 (200)
T ss_pred             EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence            478999999999999999999999999999999999  47899999999987754332111    1111111100 0   


Q ss_pred             e---eecC-CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         157 V---ISEK-KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       157 ~---~~~~-~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .   .... ......+..+-++|+|++.+|+++|+|||+   |..+...+++.|.++.+. +.++++++|+...+.
T Consensus        94 ~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~~~~  168 (200)
T cd03217          94 NADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLD  168 (200)
T ss_pred             HHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHH
Confidence            0   0000 122334445556999999999999999998   888999999999998653 789999999876543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.85  E-value=1.2e-21  Score=176.79  Aligned_cols=140  Identities=12%  Similarity=0.156  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH------HHHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA------YEQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~------~~ql~~~~~~~~~----~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....      ...+.+..+...+    .
T Consensus        21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  100 (269)
T PRK11831         21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN  100 (269)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence            47899999999999999999999999999999999999999999999876542211      0011111111110    0


Q ss_pred             ee-------ecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 VI-------SEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ~~-------~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.       .....                             ....+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  180 (269)
T PRK11831        101 VFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG  180 (269)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            00       00000                             0011111223999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|+++.+..+.++++++||...+..
T Consensus       181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~  209 (269)
T PRK11831        181 VLVKLISELNSALGVTCVVVSHDVPEVLS  209 (269)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence            99999999976657899999999776544

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.85  E-value=1e-21  Score=183.42  Aligned_cols=142  Identities=12%  Similarity=0.131  Sum_probs=103.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.....                    .+++
T Consensus        16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni   95 (353)
T PRK10851         16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI   95 (353)
T ss_pred             EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence            47899999999999999999999999999999999999999999999987642111                    1111


Q ss_pred             HHhc----------------------ccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         147 LILG----------------------KYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       147 ~~~~----------------------~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                      .+..                      +..+++-+...  ......+..+-+||||++.+|+++|+|||+   |...+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l  175 (353)
T PRK10851         96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL  175 (353)
T ss_pred             HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence            1100                      00000000000  001112222234999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ++.|+++.+..+.+++++|||...+...+
T Consensus       176 ~~~L~~l~~~~g~tii~vTHd~~ea~~~~  204 (353)
T PRK10851        176 RRWLRQLHEELKFTSVFVTHDQEEAMEVA  204 (353)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            99999998877889999999998766543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.85  E-value=1.8e-21  Score=168.05  Aligned_cols=139  Identities=12%  Similarity=0.120  Sum_probs=100.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HHHHHHHhcccCCCC----ee--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AYEQLLILGKYNDVP----VI--  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~~ql~~~~~~~~~~----~~--  158 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+..  ...++.++.+.....    +.  
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   94 (200)
T PRK13540         15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN   94 (200)
T ss_pred             eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence            5789999999999999999999999999999999999999999999987754211  111111111111100    00  


Q ss_pred             ---ec-CC------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         159 ---SE-KK------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       159 ---~~-~~------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                         .. ..                        .....+..+-+||+|++.+|+++|+|||+   |..+...+.+.|.++.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~  174 (200)
T PRK13540         95 CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR  174 (200)
T ss_pred             HHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence               00 00                        00111222223999999999999999997   9999999999999986


Q ss_pred             HHhchhhccccceeehhhc
Q psy2881         208 KVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~  226 (302)
                      + .+.++++++|+..++-.
T Consensus       175 ~-~~~tiii~sh~~~~~~~  192 (200)
T PRK13540        175 A-KGGAVLLTSHQDLPLNK  192 (200)
T ss_pred             H-cCCEEEEEeCCchhccc
Confidence            5 47899999999877533

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.85  E-value=7.2e-22  Score=177.81  Aligned_cols=139  Identities=13%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCC--CC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYND--VP--  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~--~~--  156 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+      .+.+..+...  +.  
T Consensus        25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  104 (265)
T TIGR02769        25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR  104 (265)
T ss_pred             EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence            4789999999999999999999999999999999999999999999987764322110      1111111100  00  


Q ss_pred             --e----------eecCCC---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         157 --V----------ISEKKI---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       157 --~----------~~~~~~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                        +          ......                           ....+..+-+||+|++.+|+++|+|||+   |+.
T Consensus       105 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~  184 (265)
T TIGR02769       105 MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV  184 (265)
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence              0          000000                           0011112223999999999999999997   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +...+++.|.++.+..+.++++++||...+.
T Consensus       185 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~  215 (265)
T TIGR02769       185 LQAVILELLRKLQQAFGTAYLFITHDLRLVQ  215 (265)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            9999999999998765789999999977654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.85  E-value=1.6e-21  Score=174.85  Aligned_cols=140  Identities=15%  Similarity=0.108  Sum_probs=101.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-----CCChhHHH--H-----HHHhcccCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-----TFRAAAYE--Q-----LLILGKYND  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-----~~~~~~~~--q-----l~~~~~~~~  154 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+     +......+  .     +.+..+...
T Consensus        20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~   99 (258)
T PRK11701         20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR   99 (258)
T ss_pred             eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence            57899999999999999999999999999999999999999999999987     43321111  0     111111110


Q ss_pred             CCeee---------------c----------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         155 VPVIS---------------E----------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       155 ~~~~~---------------~----------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                      ..+..               .                            .......+..+-+||+|++.+|+++|+|||+
T Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt  179 (258)
T PRK11701        100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT  179 (258)
T ss_pred             cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            00000               0                            0000011112223999999999999999997


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                         |+.+...+++.|+++.+..+.++++++|+...+..
T Consensus       180 ~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~  217 (258)
T PRK11701        180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL  217 (258)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence               99999999999999877657899999999877654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.85  E-value=1e-21  Score=183.79  Aligned_cols=141  Identities=15%  Similarity=0.145  Sum_probs=104.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC--CeEEEecccCCChhH--------------------HH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK--KSVLLAACDTFRAAA--------------------YE  144 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~--g~V~l~~~d~~~~~~--------------------~~  144 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++  |+|.+.|.++.....                    .+
T Consensus        19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e   98 (362)
T TIGR03258        19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED   98 (362)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence            47899999999999999999999999999999999999999  999999877532111                    11


Q ss_pred             HHHH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881         145 QLLI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR  201 (302)
Q Consensus       145 ql~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~  201 (302)
                      .+.+                  +.+..++.-+..  .......+..+-+||||++.+|+++|+|||+   |...+..+.+
T Consensus        99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~  178 (362)
T TIGR03258        99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE  178 (362)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence            1111                  011111110000  0001122233345999999999999999997   9999999999


Q ss_pred             HHHHHHHHh-chhhccccceeehhhcC
Q psy2881         202 ELKKIKKVI-EKKIFELPYEIFLIIDG  227 (302)
Q Consensus       202 ~L~~l~~~~-~~~i~~~~hd~~lvl~~  227 (302)
                      .|+++.+.. +.+++++|||...+...
T Consensus       179 ~l~~l~~~~~g~til~vTHd~~ea~~l  205 (362)
T TIGR03258       179 EIAALHEELPELTILCVTHDQDDALTL  205 (362)
T ss_pred             HHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence            999998775 78999999999877653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.85  E-value=1.2e-21  Score=173.64  Aligned_cols=139  Identities=9%  Similarity=0.084  Sum_probs=99.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH-----HHHHHHhcccCCC----Ce
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA-----YEQLLILGKYNDV----PV  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~-----~~ql~~~~~~~~~----~~  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....     ...+.+..+...+    .+
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (240)
T PRK09493         15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA   94 (240)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence            57899999999999999999999999999999999999999999999987643110     1111112221110    00


Q ss_pred             -----eec--CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         158 -----ISE--KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       158 -----~~~--~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                           +..  .....                             ..+..+-+||+|++.+|+++|+|||+   |..+...
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~  174 (240)
T PRK09493         95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE  174 (240)
T ss_pred             HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                 000  00000                             01111112899999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.|.++.+. +.++++++|+...+..
T Consensus       175 l~~~l~~~~~~-~~tiii~sH~~~~~~~  201 (240)
T PRK09493        175 VLKVMQDLAEE-GMTMVIVTHEIGFAEK  201 (240)
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence            99999998754 7899999998776543

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1e-21  Score=181.69  Aligned_cols=137  Identities=14%  Similarity=0.164  Sum_probs=103.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-----  161 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-----  161 (302)
                      .+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.++......+ +..+...  +.++.+.     
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~-~~~~r~~--i~~v~Q~~~~~l  105 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEA-QKLLRQK--IQIVFQNPYGSL  105 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHH-HHHHhCC--EEEEEcCchhhc
Confidence            4789999999999999999999999999999999999999999999998875432211 1111111  1110000     


Q ss_pred             -----------------------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         162 -----------------------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       162 -----------------------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                                                                     ......+..+-+||+|++.+|++||+|||+   
T Consensus       106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~L  185 (327)
T PRK11308        106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL  185 (327)
T ss_pred             CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence                                                           000111122223999999999999999998   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |..++..+++.|.++.+..+.+++++|||+.++..
T Consensus       186 D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~  220 (327)
T PRK11308        186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEH  220 (327)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            99999999999999988778999999999887764

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.85  E-value=1.6e-21  Score=180.75  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=103.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccCC---CCe
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYND---VPV  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~~---~~~  157 (302)
                      .+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.++......+      .+.+..+...   .+.
T Consensus        35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  114 (331)
T PRK15079         35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR  114 (331)
T ss_pred             EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence            5789999999999999999999999999999999999999999999998875432211      0111111100   000


Q ss_pred             e-----------ec---CC---------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         158 I-----------SE---KK---------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       158 ~-----------~~---~~---------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                      .           ..   ..                           .....+..+-+||+|++.+|++||+|||+   |.
T Consensus       115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~  194 (331)
T PRK15079        115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV  194 (331)
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence            0           00   00                           00011111223999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .++..+++.|+++.+..+.+++++|||+.++...
T Consensus       195 ~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~  228 (331)
T PRK15079        195 SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHI  228 (331)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            9999999999999877788999999999877653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.1e-21  Score=178.71  Aligned_cols=141  Identities=10%  Similarity=0.088  Sum_probs=101.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh----hHH---HHHHHhcccC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA----AAY---EQLLILGKYN------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~----~~~---~ql~~~~~~~------  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...    ...   ..+.+..+..      
T Consensus        20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~   99 (288)
T PRK13643         20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE   99 (288)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence            478999999999999999999999999999999999999999999999775310    000   0011111110      


Q ss_pred             --------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         154 --------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       154 --------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                      ++.  +... .......+..+-+||++++.+|+++|+|||+   |+.+
T Consensus       100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~  179 (288)
T PRK13643        100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA  179 (288)
T ss_pred             chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence                                            110  0000 0001112223334999999999999999997   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ...+.+.|.++++. +.+++++|||+..+...+
T Consensus       180 ~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~  211 (288)
T PRK13643        180 RIEMMQLFESIHQS-GQTVVLVTHLMDDVADYA  211 (288)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhC
Confidence            99999999998764 889999999988765533

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.85  E-value=2.4e-21  Score=170.27  Aligned_cols=140  Identities=20%  Similarity=0.193  Sum_probs=101.5

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----------hhHHHHHHHhcc----
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----------AAAYEQLLILGK----  151 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----------~~~~~ql~~~~~----  151 (302)
                      +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+...          ....+.+.....    
T Consensus        35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~  114 (224)
T cd03220          35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGL  114 (224)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCC
Confidence            358999999999999999999999999999999999999999999998865321          112222221110    


Q ss_pred             --------------cCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881         152 --------------YNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK  212 (302)
Q Consensus       152 --------------~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~  212 (302)
                                    ..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.+. +.
T Consensus       115 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~  193 (224)
T cd03220         115 SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GK  193 (224)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC
Confidence                          01110000  00011122333445999999999999999997   999999999999998765 78


Q ss_pred             hhccccceeehhhc
Q psy2881         213 KIFELPYEIFLIID  226 (302)
Q Consensus       213 ~i~~~~hd~~lvl~  226 (302)
                      ++++++|+...+..
T Consensus       194 tiii~sH~~~~~~~  207 (224)
T cd03220         194 TVILVSHDPSSIKR  207 (224)
T ss_pred             EEEEEeCCHHHHHH
Confidence            99999998766543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.5e-21  Score=173.19  Aligned_cols=141  Identities=13%  Similarity=0.161  Sum_probs=100.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Cee
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PVI  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~~  158 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........    +.+..+...+    .+.
T Consensus        19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (255)
T PRK11300         19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI   98 (255)
T ss_pred             EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence            57899999999999999999999999999999999999999999999987643221110    0001111100    000


Q ss_pred             e----------------cC------CCC--C--------------------------HHHHHHHHHHHHHhCCCCeEEEc
Q psy2881         159 S----------------EK------KIT--D--------------------------PAAIAFNAINIAQKKNTDIVIVD  188 (302)
Q Consensus       159 ~----------------~~------~~~--~--------------------------~~~~~~~~la~al~~~~~llllD  188 (302)
                      .                ..      ...  .                          ..+..+-.||+|++.+|+++|+|
T Consensus        99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  178 (255)
T PRK11300         99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD  178 (255)
T ss_pred             HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            0                00      000  0                          00111112999999999999999


Q ss_pred             CCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ||+   |+.+...+.+.|.++.+..+.++++++|+...+.+.
T Consensus       179 EPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~  220 (255)
T PRK11300        179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI  220 (255)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh
Confidence            997   999999999999998775578999999987765543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.85  E-value=1.5e-21  Score=170.33  Aligned_cols=141  Identities=13%  Similarity=0.088  Sum_probs=100.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc--------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY--------------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~--------------  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........+.++.+.              
T Consensus        25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~  104 (214)
T PRK13543         25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH  104 (214)
T ss_pred             eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence            478999999999999999999999999999999999999999999988664311000001111111              


Q ss_pred             --------------------CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         153 --------------------NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       153 --------------------~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                                          .+++-...  .......+..+-+++++++.+|+++|+|||+   |+.+...+.+.|.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  184 (214)
T PRK13543        105 FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL  184 (214)
T ss_pred             HHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                                01100000  0001112223334999999999999999997   9999999999999886


Q ss_pred             HHhchhhccccceeehhhcCC
Q psy2881         208 KVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +. +.++++++||...+.+.+
T Consensus       185 ~~-~~tiii~sH~~~~~~~~~  204 (214)
T PRK13543        185 RG-GGAALVTTHGAYAAPPVR  204 (214)
T ss_pred             hC-CCEEEEEecChhhhhhhc
Confidence            54 789999999988766544

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.2e-21  Score=170.72  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~-  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......+.    +.+..+...+    .+ 
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (237)
T PRK11614         19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE   98 (237)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence            57899999999999999999999999999999999999999999999987543221111    1111111100    00 


Q ss_pred             -------eecCCC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881         158 -------ISEKKI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR  201 (302)
Q Consensus       158 -------~~~~~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~  201 (302)
                             ......                          ....+..+-+||+|++.+|+++|+|||+   |+.+...+.+
T Consensus        99 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~  178 (237)
T PRK11614         99 ENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD  178 (237)
T ss_pred             HHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence                   000000                          0000111112899999999999999997   9999999999


Q ss_pred             HHHHHHHHhchhhccccceeehhhcC
Q psy2881         202 ELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       202 ~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .|+++.+. +.+++++|||...+.+.
T Consensus       179 ~l~~~~~~-~~tiii~sH~~~~~~~~  203 (237)
T PRK11614        179 TIEQLREQ-GMTIFLVEQNANQALKL  203 (237)
T ss_pred             HHHHHHHC-CCEEEEEeCcHHHHHhh
Confidence            99998754 78999999987655443

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.85  E-value=2.7e-21  Score=172.78  Aligned_cols=140  Identities=14%  Similarity=0.102  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-----CCChhHHHH-------HHHhcccCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-----TFRAAAYEQ-------LLILGKYND  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-----~~~~~~~~q-------l~~~~~~~~  154 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+     +......+.       +.+..+...
T Consensus        17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~   96 (253)
T TIGR02323        17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR   96 (253)
T ss_pred             eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence            46899999999999999999999999999999999999999999998866     332211100       111111110


Q ss_pred             CCeeec-------------CC------------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         155 VPVISE-------------KK------------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       155 ~~~~~~-------------~~------------------------------~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                      ..+...             ..                              .....+..+-+||+|++.+|+++|+|||+
T Consensus        97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~  176 (253)
T TIGR02323        97 DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT  176 (253)
T ss_pred             cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            000000             00                              00001112223999999999999999997


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                         |+.+...+++.|.++.+..+.++++++|+...+..
T Consensus       177 ~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~  214 (253)
T TIGR02323       177 GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARL  214 (253)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence               99999999999999876667899999998776543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.85  E-value=2.1e-21  Score=186.19  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=104.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhc----------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG----------------  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~----------------  150 (302)
                      .++++|||++.+||+++|||++|||||||.+.|+|+++|++|.|.+.|.|+ ... ...++.+.                
T Consensus       305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~-~~~-~~~~~~~r~~~QmvFQdp~~SLnP  382 (539)
T COG1123         305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL-DLT-GGELRRLRRRIQMVFQDPYSSLNP  382 (539)
T ss_pred             eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-ccc-cchhhhhhhheEEEEeCcccccCc
Confidence            468999999999999999999999999999999999999999999999872 111 00011111                


Q ss_pred             -------------------------------ccCCCCe--eecCC-CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         151 -------------------------------KYNDVPV--ISEKK-ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       151 -------------------------------~~~~~~~--~~~~~-~~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                                                     +..+++-  ..... ...-.+..+-+||||++.+|++|++|||+   |+
T Consensus       383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv  462 (539)
T COG1123         383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV  462 (539)
T ss_pred             cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence                                           0111110  00000 00011222334999999999999999997   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ..+..+++.|+++.++.|.+.+++|||+.+|-.-+
T Consensus       463 svqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~  497 (539)
T COG1123         463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA  497 (539)
T ss_pred             HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC
Confidence            99999999999999999999999999998876554

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.85  E-value=2.9e-21  Score=174.04  Aligned_cols=140  Identities=15%  Similarity=0.161  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~-----------  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+.+..+.           
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv  106 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI  106 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence            478999999999999999999999999999999999999999999998765321110   000011111           


Q ss_pred             -----------------------------CCCC-eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 -----------------------------NDVP-VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 -----------------------------~~~~-~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                   .++. ....  .......+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  186 (267)
T PRK15112        107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS  186 (267)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence                                         0010 0000  0001112222234999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.|.++.+..+.++++++|+...+..
T Consensus       187 ~l~~~l~~~~~~~g~tviivsH~~~~~~~  215 (267)
T PRK15112        187 QLINLMLELQEKQGISYIYVTQHLGMMKH  215 (267)
T ss_pred             HHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence            99999999987667899999998766543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.85  E-value=4.9e-21  Score=168.88  Aligned_cols=138  Identities=14%  Similarity=0.206  Sum_probs=98.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHH-HHHHHhccc----------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAY-EQLLILGKY----------  152 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~-~ql~~~~~~----------  152 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|    ++|+|.+.|.++...... ..+.+..+.          
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            46899999999999999999999999999999999998    899999988765321000 000001110          


Q ss_pred             -----------------------------CCCC----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         153 -----------------------------NDVP----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       153 -----------------------------~~~~----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                   .++.    ... ........+..+-+||+|++.+|+++|+|||+   |..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~  160 (230)
T TIGR02770        81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence                                         0010    000 00001112233334999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ...+.+.|.++.+..+.++++++|+...+.
T Consensus       161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  190 (230)
T TIGR02770       161 QARVLKLLRELRQLFGTGILLITHDLGVVA  190 (230)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            999999999987655789999999876543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.85  E-value=2.8e-21  Score=169.55  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--c--cCCChhHHH-------HHHHhcccC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--C--DTFRAAAYE-------QLLILGKYN--  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~--d~~~~~~~~-------ql~~~~~~~--  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+  .  +........       .+.+..+..  
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~  101 (224)
T TIGR02324        22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV  101 (224)
T ss_pred             EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence            478999999999999999999999999999999999999999999973  2  322111100       011111111  


Q ss_pred             -----------------------------------CCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         154 -----------------------------------DVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       154 -----------------------------------~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                                                         ++.- . . ........+..+-+||+|++.+|+++|+|||+   |
T Consensus       102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD  181 (224)
T TIGR02324       102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD  181 (224)
T ss_pred             CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence                                               1100 0 0 00001112222334999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+...+.+.|+++.+. +.++++++|+..++..
T Consensus       182 ~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~  214 (224)
T TIGR02324       182 AANRQVVVELIAEAKAR-GAALIGIFHDEEVREL  214 (224)
T ss_pred             HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence            99999999999998654 7899999999776543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.5e-21  Score=175.12  Aligned_cols=138  Identities=17%  Similarity=0.120  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH----HHHHHhcccCCC-----C-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY----EQLLILGKYNDV-----P-  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~----~ql~~~~~~~~~-----~-  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......    ..+.+..+....     . 
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   95 (274)
T PRK13644         16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV   95 (274)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence            478999999999999999999999999999999999999999999998876432110    111111111100     0 


Q ss_pred             -----eeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         157 -----VISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       157 -----~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                           +........                             ..+..+-+||+|++.+|+++|+|||+   |+.+...+
T Consensus        96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l  175 (274)
T PRK13644         96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV  175 (274)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                 000000000                             01111112999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhh
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ++.|+++.+ .+.+++++|||...+.
T Consensus       176 ~~~l~~l~~-~g~til~~tH~~~~~~  200 (274)
T PRK13644        176 LERIKKLHE-KGKTIVYITHNLEELH  200 (274)
T ss_pred             HHHHHHHHh-CCCEEEEEecCHHHHh
Confidence            999999875 4889999999987753

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.8e-21  Score=174.34  Aligned_cols=140  Identities=18%  Similarity=0.135  Sum_probs=101.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC--CC---e-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND--VP---V-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~--~~---~-  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+......   ..++.+..+...  .+   + 
T Consensus        23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~  102 (269)
T PRK13648         23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK  102 (269)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence            37899999999999999999999999999999999999999999999987643211   111111222110  00   0 


Q ss_pred             -----eecCC-----------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         158 -----ISEKK-----------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       158 -----~~~~~-----------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                           .....                             .....+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~  182 (269)
T PRK13648        103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL  182 (269)
T ss_pred             HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence                 00000                             00111112223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhc
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.|+++.+..+.++++++|+...+..
T Consensus       183 ~~L~~~~~~~~~tiiivtH~~~~~~~  208 (269)
T PRK13648        183 DLVRKVKSEHNITIISITHDLSEAME  208 (269)
T ss_pred             HHHHHHHHhcCCEEEEEecCchHHhc
Confidence            99999876557899999999876543

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1e-21  Score=177.45  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=99.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC--h---hHHHHHHHhcccCCCCee---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR--A---AAYEQLLILGKYNDVPVI---  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~--~---~~~~ql~~~~~~~~~~~~---  158 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..  .   .....+.+..+.....+.   
T Consensus        15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~   94 (271)
T PRK13638         15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD   94 (271)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence            47899999999999999999999999999999999999999999999987531  1   001111111221100000   


Q ss_pred             --------ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         159 --------SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       159 --------~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                              .......                             ..+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~  174 (271)
T PRK13638         95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ  174 (271)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence                    0000000                             01111223999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.|.++.+. +.++++++||...+..
T Consensus       175 l~~~l~~~~~~-g~tii~vtH~~~~~~~  201 (271)
T PRK13638        175 MIAIIRRIVAQ-GNHVIISSHDIDLIYE  201 (271)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            99999998754 7899999999877654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.85  E-value=3.5e-21  Score=167.45  Aligned_cols=137  Identities=15%  Similarity=0.088  Sum_probs=97.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC----Cee--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----PVI--  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~~~--  158 (302)
                      ++++++||++++| +++|+||||||||||+++|+|+++|++|+|.+.|.++.....  ...+.+..+....    .+.  
T Consensus        14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   92 (211)
T cd03264          14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF   92 (211)
T ss_pred             EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence            4789999999999 999999999999999999999999999999999977543210  1111111111110    000  


Q ss_pred             ------e-cCCC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         159 ------S-EKKI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       159 ------~-~~~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                            . ....                          ....+..+-+||+|++.+|+++|+|||+   |+.+...+.+.
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  172 (211)
T cd03264          93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL  172 (211)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                  0 0000                          0011111223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |+++++  +.++++++||...+..
T Consensus       173 l~~~~~--~~tii~vsH~~~~~~~  194 (211)
T cd03264         173 LSELGE--DRIVILSTHIVEDVES  194 (211)
T ss_pred             HHHHhC--CCEEEEEcCCHHHHHH
Confidence            999875  4789999998776543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.6e-21  Score=171.69  Aligned_cols=139  Identities=11%  Similarity=0.092  Sum_probs=98.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----C--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----P--  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~--  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+    .+.+..+...+    .  
T Consensus        17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   96 (241)
T PRK10895         17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY   96 (241)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence            5789999999999999999999999999999999999999999999987754322111    11111111100    0  


Q ss_pred             ----eeecCC-CCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         157 ----VISEKK-ITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       157 ----~~~~~~-~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                          +..... ..+                             ..+..+-+||+|++.+|+++|+|||+   |+.+...+
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  176 (241)
T PRK10895         97 DNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI  176 (241)
T ss_pred             HHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence                000000 000                             01111112999999999999999997   88889999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhc
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.++.+ .+.++++++|+...+..
T Consensus       177 ~~~l~~~~~-~g~tiii~sH~~~~~~~  202 (241)
T PRK10895        177 KRIIEHLRD-SGLGVLITDHNVRETLA  202 (241)
T ss_pred             HHHHHHHHh-cCCEEEEEEcCHHHHHH
Confidence            999988865 47899999998765443

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.85  E-value=2.8e-21  Score=166.60  Aligned_cols=137  Identities=16%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCC-C-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDV-P-------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~-~-------  156 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.++.....  ..++.++.+.... +       
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   93 (198)
T TIGR01189        14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALEN   93 (198)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHH
Confidence            47899999999999999999999999999999999999999999998876532111  0011111111000 0       


Q ss_pred             --eeecCCC-------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881         157 --VISEKKI-------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI  206 (302)
Q Consensus       157 --~~~~~~~-------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l  206 (302)
                        +......                         ....+..+-+||+|++.+|+++|+|||+   |..+...+++.|.++
T Consensus        94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  173 (198)
T TIGR01189        94 LHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH  173 (198)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence              0000000                         0011122223999999999999999998   889999999999998


Q ss_pred             HHHhchhhccccceeehh
Q psy2881         207 KKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       207 ~~~~~~~i~~~~hd~~lv  224 (302)
                      .+. +.++++++|+....
T Consensus       174 ~~~-~~tii~~sH~~~~~  190 (198)
T TIGR01189       174 LAR-GGIVLLTTHQDLGL  190 (198)
T ss_pred             HhC-CCEEEEEEcccccc
Confidence            654 78999999987543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=7.8e-21  Score=155.42  Aligned_cols=138  Identities=14%  Similarity=0.107  Sum_probs=108.6

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC---hhHHHHHHHhcccCC--------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR---AAAYEQLLILGKYND--------  154 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~---~~~~~ql~~~~~~~~--------  154 (302)
                      .++++++||++.+|+.++|+||+||||||+++.+|.+..|++|.+.+.|.|+..   .+.+.|+.+.++...        
T Consensus        16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD   95 (223)
T COG4619          16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED   95 (223)
T ss_pred             CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence            468999999999999999999999999999999999999999999999998753   234566777666532        


Q ss_pred             ---CCeeecCCCCCHH--------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         155 ---VPVISEKKITDPA--------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       155 ---~~~~~~~~~~~~~--------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                         +|+.......++.                          +..+-+|+|-+...|+++||||||   |+.+...+-+.
T Consensus        96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m  175 (223)
T COG4619          96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM  175 (223)
T ss_pred             ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence               2222222222221                          111223778899999999999998   99999999999


Q ss_pred             HHHHHHHhchhhccccceeeh
Q psy2881         203 LKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +.++.+.....++++|||...
T Consensus       176 i~~~v~~q~vAv~WiTHd~dq  196 (223)
T COG4619         176 IHRYVREQNVAVLWITHDKDQ  196 (223)
T ss_pred             HHHHhhhhceEEEEEecChHH
Confidence            999988778899999998654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.7e-21  Score=176.00  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=101.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---h-H---HHHHHHhcccC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---A-A---YEQLLILGKYN------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---~-~---~~ql~~~~~~~------  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...   . .   ...+.+..+..      
T Consensus        21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~  100 (287)
T PRK13641         21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE  100 (287)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence            478999999999999999999999999999999999999999999999765321   0 0   00011111110      


Q ss_pred             --------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         154 --------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       154 --------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                      ++.  +... .......+..+-+||+|++.+|+++|+|||+   |+.+
T Consensus       101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~  180 (287)
T PRK13641        101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG  180 (287)
T ss_pred             chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence                                            010  0000 0001112222234999999999999999997   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ...+.+.|.++.+ .+.+++++|||...+...+
T Consensus       181 ~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~  212 (287)
T PRK13641        181 RKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYA  212 (287)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhC
Confidence            9999999999865 4889999999988765443

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.85  E-value=1.7e-21  Score=178.47  Aligned_cols=140  Identities=17%  Similarity=0.152  Sum_probs=101.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYNDVP--------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~~--------  156 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+......  ...+.+..+...+.        
T Consensus        16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~   95 (301)
T TIGR03522        16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY   95 (301)
T ss_pred             EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence            47899999999999999999999999999999999999999999999977643111  11111111111100        


Q ss_pred             --eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         157 --VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       157 --~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                        +.....+                             ....+..+-.+|+|++.+|+++|+|||+   |+.+...+++.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~  175 (301)
T TIGR03522        96 LQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV  175 (301)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence              0000000                             0111112223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+  +.+++++||++..+...+
T Consensus       176 l~~~~~--~~tiii~sH~l~~~~~~~  199 (301)
T TIGR03522       176 IKNIGK--DKTIILSTHIMQEVEAIC  199 (301)
T ss_pred             HHHhcC--CCEEEEEcCCHHHHHHhC
Confidence            999864  689999999998776544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.9e-21  Score=182.97  Aligned_cols=142  Identities=11%  Similarity=0.119  Sum_probs=104.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql  146 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+.+|++|+|.+.|.+.....                    ..+.+
T Consensus        33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi  112 (377)
T PRK11607         33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI  112 (377)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence            4688999999999999999999999999999999999999999999997753211                    11111


Q ss_pred             HH------------------hcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+                  +.+..++.-+...  ......+..+-+||||++.+|+++|+|||+   |...+..+.+.|
T Consensus       113 ~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  192 (377)
T PRK11607        113 AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV  192 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11                  0011111100000  001122333345999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .++.+..+.+++++|||...+...+
T Consensus       193 ~~l~~~~g~tii~vTHd~~ea~~la  217 (377)
T PRK11607        193 VDILERVGVTCVMVTHDQEEAMTMA  217 (377)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhC
Confidence            9998877899999999998776544

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.8e-21  Score=172.82  Aligned_cols=138  Identities=10%  Similarity=0.045  Sum_probs=98.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------h---HHHHHHHhcccCCC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------A---AYEQLLILGKYNDV--  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------~---~~~ql~~~~~~~~~--  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...      .   ...++.+..+....  
T Consensus        16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   95 (242)
T PRK11124         16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP   95 (242)
T ss_pred             eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence            478999999999999999999999999999999999999999999998765210      0   01111112221110  


Q ss_pred             --Cee------e-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         156 --PVI------S-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       156 --~~~------~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                        .+.      . ....                             ....+..+-+||+|++.+|+++|+|||+   |+.
T Consensus        96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~  175 (242)
T PRK11124         96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE  175 (242)
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence              000      0 0000                             0011112223999999999999999997   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +...+++.|+++.+ .+.++++++||...+.
T Consensus       176 ~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~  205 (242)
T PRK11124        176 ITAQIVSIIRELAE-TGITQVIVTHEVEVAR  205 (242)
T ss_pred             HHHHHHHHHHHHHH-cCCEEEEEeCCHHHHH
Confidence            99999999999865 4789999999876643

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=5.2e-21  Score=176.51  Aligned_cols=139  Identities=12%  Similarity=0.161  Sum_probs=100.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------hHHHH----HH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------AAYEQ----LL  147 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------~~~~q----l~  147 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...               .....    +.
T Consensus        40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig  119 (320)
T PRK13631         40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS  119 (320)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence            479999999999999999999999999999999999999999999998665321               01111    11


Q ss_pred             HhcccCCCCee----------ec-C------------------------------CCCCHHHHHHHHHHHHHhCCCCeEE
Q psy2881         148 ILGKYNDVPVI----------SE-K------------------------------KITDPAAIAFNAINIAQKKNTDIVI  186 (302)
Q Consensus       148 ~~~~~~~~~~~----------~~-~------------------------------~~~~~~~~~~~~la~al~~~~~lll  186 (302)
                      +..+.....++          .. .                              ......+..+-+||+|++.+|+++|
T Consensus       120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL  199 (320)
T PRK13631        120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI  199 (320)
T ss_pred             EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            11111100000          00 0                              0001112222239999999999999


Q ss_pred             EcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         187 VDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       187 lDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +|||+   |+.+...+++.|.++.+. +.|++++|||+..+..
T Consensus       200 LDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~  241 (320)
T PRK13631        200 FDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLE  241 (320)
T ss_pred             EECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH
Confidence            99997   999999999999998754 8899999999886654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=4.6e-21  Score=160.34  Aligned_cols=136  Identities=14%  Similarity=0.137  Sum_probs=101.6

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-----------------HHHHH
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-----------------EQLLI  148 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-----------------~ql~~  148 (302)
                      .++++++|+++.+|+.+.++||+||||||+++.+||+.+|+.|+|.+++..+...++.                 +...+
T Consensus        18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf   97 (259)
T COG4525          18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF   97 (259)
T ss_pred             hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999865433221                 11100


Q ss_pred             ------------------hcccCCCC-----eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         149 ------------------LGKYNDVP-----VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       149 ------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                                        +....++.     ++.+.++   .+..+--||||++.+|+++++|||.   |.-+++.+.+.
T Consensus        98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSG---GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQel  174 (259)
T COG4525          98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSG---GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL  174 (259)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecc---hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHH
Confidence                              00001110     0111111   1222233999999999999999996   88889999999


Q ss_pred             HHHHHHHhchhhccccceeehh
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      |.++.+..|+.++++|||+..+
T Consensus       175 Lldlw~~tgk~~lliTH~ieEA  196 (259)
T COG4525         175 LLDLWQETGKQVLLITHDIEEA  196 (259)
T ss_pred             HHHHHHHhCCeEEEEeccHHHH
Confidence            9999999999999999987753

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=2.1e-21  Score=176.07  Aligned_cols=139  Identities=12%  Similarity=0.076  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYN------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~------  153 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....       ....+.+..+..      
T Consensus        21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~  100 (280)
T PRK13649         21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE  100 (280)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence            4789999999999999999999999999999999999999999999887643210       001111111110      


Q ss_pred             --------------------------------CCC-ee-ec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         154 --------------------------------DVP-VI-SE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       154 --------------------------------~~~-~~-~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                      ++. .. .. .......+..+-+||+|++.+|+++|+|||+   |+.+
T Consensus       101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  180 (280)
T PRK13649        101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG  180 (280)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                                            010 00 00 0001112222234999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ...+.+.|+++.+. +.+++++||+...+..
T Consensus       181 ~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~  210 (280)
T PRK13649        181 RKELMTLFKKLHQS-GMTIVLVTHLMDDVAN  210 (280)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEeccHHHHHH
Confidence            99999999998754 7899999999876544

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-21  Score=177.16  Aligned_cols=140  Identities=14%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC----C------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV----P------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~----~------  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++........+.+..+....    +      
T Consensus        21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~  100 (272)
T PRK15056         21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV  100 (272)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence            478999999999999999999999999999999999999999999988764211000001111111000    0      


Q ss_pred             ----eee-----cCCCCC--------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 ----VIS-----EKKITD--------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ----~~~-----~~~~~~--------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                          ...     ......                          ..+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~  180 (272)
T PRK15056        101 VMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR  180 (272)
T ss_pred             eecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence                000     000000                          01111112999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +.+.|.++++. +.++++++||...+...
T Consensus       181 l~~~L~~~~~~-g~tviivsH~~~~~~~~  208 (272)
T PRK15056        181 IISLLRELRDE-GKTMLVSTHNLGSVTEF  208 (272)
T ss_pred             HHHHHHHHHhC-CCEEEEEeCCHHHHHHh
Confidence            99999998754 78999999987665443

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.7e-21  Score=178.71  Aligned_cols=141  Identities=12%  Similarity=0.097  Sum_probs=99.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------------------------hH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------------------------AA  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------------------------~~  142 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+....                        ..
T Consensus        21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (305)
T PRK13651         21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI  100 (305)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence            478999999999999999999999999999999999999999999986543100                        00


Q ss_pred             ---HHHHHHhcccCCCCeee-----------cCCC------------------------------CCHHHHHHHHHHHHH
Q psy2881         143 ---YEQLLILGKYNDVPVIS-----------EKKI------------------------------TDPAAIAFNAINIAQ  178 (302)
Q Consensus       143 ---~~ql~~~~~~~~~~~~~-----------~~~~------------------------------~~~~~~~~~~la~al  178 (302)
                         ...+.+..+.....++.           ....                              ....+..+-+||+|+
T Consensus       101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL  180 (305)
T PRK13651        101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL  180 (305)
T ss_pred             HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence               00111111211000000           0000                              001112222399999


Q ss_pred             hCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         179 KKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       179 ~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.+|+++|+|||+   |+.....+++.|.++.+ .+.+++++|||...+...+
T Consensus       181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~a  232 (305)
T PRK13651        181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWT  232 (305)
T ss_pred             HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhC
Confidence            9999999999998   99999999999999875 4889999999988765543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=3.2e-21  Score=174.15  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=99.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC-----C----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN-----D----  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~-----~----  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....   ...+.+..+..     +    
T Consensus        23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  102 (271)
T PRK13632         23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE  102 (271)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence            57899999999999999999999999999999999999999999999877642111   11111111110     0    


Q ss_pred             --CCeeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         155 --VPVISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       155 --~~~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                        +.+......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus       103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~  182 (271)
T PRK13632        103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK  182 (271)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence              000000000                             0011112223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehh
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +.|.++.+..+.++++++|+...+
T Consensus       183 ~~l~~~~~~~~~tiii~sH~~~~~  206 (271)
T PRK13632        183 KIMVDLRKTRKKTLISITHDMDEA  206 (271)
T ss_pred             HHHHHHHHhcCcEEEEEEechhHH
Confidence            999998765458999999987765

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.84  E-value=8.2e-21  Score=167.62  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=101.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.|.+......                    .+.+
T Consensus        14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl   93 (232)
T cd03300          14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI   93 (232)
T ss_pred             eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence            57899999999999999999999999999999999999999999998876532111                    1111


Q ss_pred             HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      ..                  +.+..++.-...  .......+..+-+|++|++.+|+++|+|||+   |..+...+.+.|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l  173 (232)
T cd03300          94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL  173 (232)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            10                  000011100000  0001112222334999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .++.+..+.++++++|+...+..
T Consensus       174 ~~~~~~~~~tiii~sh~~~~~~~  196 (232)
T cd03300         174 KRLQKELGITFVFVTHDQEEALT  196 (232)
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHH
Confidence            99877557899999998776543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=6.8e-21  Score=167.78  Aligned_cols=142  Identities=15%  Similarity=0.130  Sum_probs=112.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCCCe-eecCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDVPV-ISEKK  162 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~~~-~~~~~  162 (302)
                      .++++|||++.+|++++|||.|||||||+-+.|.++++|++|+|.+.|.|......   .+++..+-+..+++- +...+
T Consensus        27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry  106 (268)
T COG4608          27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY  106 (268)
T ss_pred             EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence            57899999999999999999999999999999999999999999999998754332   233333334444321 01111


Q ss_pred             C--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         163 I--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       163 ~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +  ..-.+..+-.||||++.+|++++.|||+   |...+.++++.|.++.+..+.+.++++||+..|-..+
T Consensus       107 PhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is  177 (268)
T COG4608         107 PHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS  177 (268)
T ss_pred             CcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence            1  1123344456999999999999999997   9999999999999999999999999999988766554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=4.5e-21  Score=172.66  Aligned_cols=141  Identities=14%  Similarity=0.107  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----Ce--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----PV--  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~~--  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+.++.+....    .+  
T Consensus        25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (265)
T PRK10575         25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE  104 (265)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence            578999999999999999999999999999999999999999999998765321111   111111111110    00  


Q ss_pred             ------eecC-----CC--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         158 ------ISEK-----KI--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       158 ------~~~~-----~~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                            ....     ..                          ....+..+-+||+|++.+|+++|+|||+   |..+..
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~  184 (265)
T PRK10575        105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV  184 (265)
T ss_pred             HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence                  0000     00                          0001111112999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+++.|.++.+..+.++++++|+...+...
T Consensus       185 ~~~~~l~~l~~~~~~tiii~sH~~~~i~~~  214 (265)
T PRK10575        185 DVLALVHRLSQERGLTVIAVLHDINMAARY  214 (265)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            999999998765578999999998766543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.84  E-value=3.5e-21  Score=172.71  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----Ce--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----PV--  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~~--  157 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+....   ..+.+..+...+    .+  
T Consensus        16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   95 (258)
T PRK13548         16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE   95 (258)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence            478999999999999999999999999999999999999999999998765432111   111111121111    00  


Q ss_pred             ----eecCCC-----------------------------CCHHHHHHHHHHHHHh------CCCCeEEEcCCC---Cccc
Q psy2881         158 ----ISEKKI-----------------------------TDPAAIAFNAINIAQK------KNTDIVIVDTSG---RLST  195 (302)
Q Consensus       158 ----~~~~~~-----------------------------~~~~~~~~~~la~al~------~~~~llllDEP~---d~~~  195 (302)
                          ......                             ....+..+-+||+|++      .+|+++|+|||+   |+.+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~  175 (258)
T PRK13548         96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH  175 (258)
T ss_pred             HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence                000000                             0001111122899999      599999999997   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ...+++.|.++.+..+.+++++|||...+..
T Consensus       176 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~  206 (258)
T PRK13548        176 QHHVLRLARQLAHERGLAVIVVLHDLNLAAR  206 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            9999999999874557899999999776543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=5.4e-21  Score=173.72  Aligned_cols=141  Identities=17%  Similarity=0.090  Sum_probs=101.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC--hhHH---HHHHHhcccCCCCee---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR--AAAY---EQLLILGKYNDVPVI---  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~--~~~~---~ql~~~~~~~~~~~~---  158 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+...  ....   ..+.+..+.....++   
T Consensus        20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t   99 (283)
T PRK13636         20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS   99 (283)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence            47899999999999999999999999999999999999999999999987631  1111   111111121100000   


Q ss_pred             --------ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         159 --------SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       159 --------~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                              .......                             ..+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus       100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~  179 (283)
T PRK13636        100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE  179 (283)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence                    0000000                             01111112999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++.|+++.+..+.++++++||+..+...
T Consensus       180 l~~~l~~l~~~~g~tillvsH~~~~~~~~  208 (283)
T PRK13636        180 IMKLLVEMQKELGLTIIIATHDIDIVPLY  208 (283)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence            99999999876688999999998876543

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.84  E-value=6.6e-21  Score=167.58  Aligned_cols=138  Identities=13%  Similarity=0.124  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh-----hhCCCeEEEecccCCChh--------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-----KKRKKSVLLAACDTFRAA--------------------  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~-----~~~~g~V~l~~~d~~~~~--------------------  141 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|++     +|++|+|.+.|.++....                    
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   93 (227)
T cd03260          14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF   93 (227)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence            5789999999999999999999999999999999999     899999999887643211                    


Q ss_pred             ---HHHHHHH-------------------hcccCCCCee-ecC---CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         142 ---AYEQLLI-------------------LGKYNDVPVI-SEK---KITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       142 ---~~~ql~~-------------------~~~~~~~~~~-~~~---~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                         ..+.+..                   +.+..++.-. ...   ......+..+-+||+|++.+|+++|+|||+   |
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  173 (227)
T cd03260          94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD  173 (227)
T ss_pred             cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence               0011100                   0000111000 000   111222333445899999999999999998   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+...+++.|+++.+.  .++++++||...+..
T Consensus       174 ~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~  205 (227)
T cd03260         174 PISTAKIEELIAELKKE--YTIVIVTHNMQQAAR  205 (227)
T ss_pred             HHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHH
Confidence            99999999999999764  789999998776543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=6e-21  Score=173.18  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=101.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH----HHHHHHhcccCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA----YEQLLILGKYND--------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~----~~ql~~~~~~~~--------  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....    ...+.+..+...        
T Consensus        24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v  103 (280)
T PRK13633         24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV  103 (280)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence            48999999999999999999999999999999999999999999999877643211    111111111110        


Q ss_pred             ---CCeeecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         155 ---VPVISEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       155 ---~~~~~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                         +.+.........                             .+..+-+||+|++.+|+++|+|||+   |+.+...+
T Consensus       104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l  183 (280)
T PRK13633        104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV  183 (280)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence               000000000010                             1111112999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhc
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ++.|+++++..+.++++++|+...+..
T Consensus       184 ~~~l~~l~~~~g~tillvtH~~~~~~~  210 (280)
T PRK13633        184 VNTIKELNKKYGITIILITHYMEEAVE  210 (280)
T ss_pred             HHHHHHHHHhcCCEEEEEecChHHHhc
Confidence            999999977668899999999887654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.84  E-value=2.9e-21  Score=172.28  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh----------H-HHHHHHhcccCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----------A-YEQLLILGKYNDV  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~----------~-~~ql~~~~~~~~~  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....          . ...+.+..+...+
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (250)
T PRK11264         17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL   96 (250)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence            5789999999999999999999999999999999999999999999887653210          0 0011111111100


Q ss_pred             ----Cee------e-cCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         156 ----PVI------S-EKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       156 ----~~~------~-~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                          ...      . ....                             ....+..+-+||+|++.+|+++|+|||+   |
T Consensus        97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD  176 (250)
T PRK11264         97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD  176 (250)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence                000      0 0000                             0011112223999999999999999998   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..+...+++.|.++.+. +.++++++||...+.
T Consensus       177 ~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~  208 (250)
T PRK11264        177 PELVGEVLNTIRQLAQE-KRTMVIVTHEMSFAR  208 (250)
T ss_pred             HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence            99999999999998754 789999999876543

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.84  E-value=2.3e-21  Score=179.55  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=103.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChhHHHHH-------HHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAAYEQL-------LILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~~~~ql-------~~~~~~~---  153 (302)
                      .+++++||++++|++++|+|+||||||||+++|+|+++|.   +|+|.++|.++.+....+..       .+..+..   
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~  109 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS  109 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence            4789999999999999999999999999999999999985   99999999887543221100       0001110   


Q ss_pred             -------------------------------------CCCe----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         154 -------------------------------------DVPV----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       154 -------------------------------------~~~~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                                                           +++-    .. ......-.+..+-+||+|++.+|++||+|||+
T Consensus       110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt  189 (330)
T PRK09473        110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT  189 (330)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                                                 0000    00 00000111222234999999999999999998


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                         |..++..+++.|.++.+..+.+++++|||+..+..
T Consensus       190 s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~  227 (330)
T PRK09473        190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG  227 (330)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence               99999999999999988778899999999887654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.84  E-value=7.6e-21  Score=157.39  Aligned_cols=131  Identities=10%  Similarity=0.102  Sum_probs=97.4

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH----------------------------
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY----------------------------  143 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~----------------------------  143 (302)
                      ++++++.|++++|+||+|||||||++.|||+..|.+|.|.++|.|.......                            
T Consensus        18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~   97 (231)
T COG3840          18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS   97 (231)
T ss_pred             EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence            4667899999999999999999999999999999999999999986422111                            


Q ss_pred             ----------HHHHHhcccCCCCeeecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         144 ----------EQLLILGKYNDVPVISEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       144 ----------~ql~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                                +++...+.+.|+.-+...-+  ..-.+..+-++||+++++..++++|||+   |+..+.+++..+.++++
T Consensus        98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~  177 (231)
T COG3840          98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD  177 (231)
T ss_pred             cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence                      11111111222111110000  1112233445999999999999999997   99999999999999999


Q ss_pred             Hhchhhccccceee
Q psy2881         209 VIEKKIFELPYEIF  222 (302)
Q Consensus       209 ~~~~~i~~~~hd~~  222 (302)
                      +.+.|++++||...
T Consensus       178 E~~~TllmVTH~~~  191 (231)
T COG3840         178 ERKMTLLMVTHHPE  191 (231)
T ss_pred             hhCCEEEEEeCCHH
Confidence            99999999999654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=6e-21  Score=170.06  Aligned_cols=141  Identities=15%  Similarity=0.178  Sum_probs=107.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-------HhcccCCC-C---
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-------ILGKYNDV-P---  156 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-------~~~~~~~~-~---  156 (302)
                      -+.++||+++.|||+.|.|-+|||||||++++.+++.|+.|+|.+.|.|+.+....+-..       ...|.+++ |   
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt  122 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT  122 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence            468999999999999999999999999999999999999999999999987655432111       11111110 1   


Q ss_pred             --------eeecCCC-CCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 --------VISEKKI-TDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 --------~~~~~~~-~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                              ...+.-+ .+..+.+.+                          -||||++.+|+++|+|||+   ||--+.+
T Consensus       123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~  202 (386)
T COG4175         123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE  202 (386)
T ss_pred             HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence                    0000000 011111111                          1999999999999999997   9988999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.++|.++.+..++|++++|||+..++.-+
T Consensus       203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         203 MQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             HHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence            999999999999999999999999887755

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5e-21  Score=172.34  Aligned_cols=142  Identities=15%  Similarity=0.168  Sum_probs=101.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----Ce--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----PV--  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~~--  157 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++......   ..+.+..+....    .+  
T Consensus        21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~  100 (265)
T PRK10253         21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE  100 (265)
T ss_pred             EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence            478999999999999999999999999999999999999999999998765322111   111111111100    00  


Q ss_pred             ------eec-----CCCC--------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         158 ------ISE-----KKIT--------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       158 ------~~~-----~~~~--------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                            ...     ....                          ...+..+-.||+|++.+|+++|+|||+   |+.+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~  180 (265)
T PRK10253        101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI  180 (265)
T ss_pred             HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence                  000     0000                          001111122999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+++.|.++.+..+.++++++||...+.+.+
T Consensus       181 ~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~  211 (265)
T PRK10253        181 DLLELLSELNREKGYTLAAVLHDLNQACRYA  211 (265)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            9999999987655789999999988765543

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=8.2e-21  Score=173.05  Aligned_cols=141  Identities=10%  Similarity=0.111  Sum_probs=100.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----h-h---HHHHHHHhcccC-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----A-A---AYEQLLILGKYN-----  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----~-~---~~~ql~~~~~~~-----  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..    . .   ....+.+..+..     
T Consensus        25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  104 (289)
T PRK13645         25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF  104 (289)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence            37899999999999999999999999999999999999999999998865421    0 0   000001111110     


Q ss_pred             ---------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         154 ---------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       154 ---------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                                                       +++  +... .......+..+-+||+|++.+|+++|+|||+   |+.
T Consensus       105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~  184 (289)
T PRK13645        105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK  184 (289)
T ss_pred             hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence                                             000  0000 0001112222334999999999999999997   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +...+++.|.++.+..+.+++++||+...+...
T Consensus       185 ~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~  217 (289)
T PRK13645        185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRI  217 (289)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            999999999998775678999999998765543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5.3e-21  Score=177.35  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=102.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh----hCCCeEEEecccCCChhHHHH-------HHHhcccCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK----KRKKSVLLAACDTFRAAAYEQ-------LLILGKYND-  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~----~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~-  154 (302)
                      .+++++||++.+|++++|+|+||||||||+++|+|+++    +++|+|.+.|.++......+.       +.+..+... 
T Consensus        21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~  100 (330)
T PRK15093         21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS  100 (330)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence            47899999999999999999999999999999999986    578999999987653322111       001111100 


Q ss_pred             --------------------------------------------CCee-----ecCCCCCHHHHHHHHHHHHHhCCCCeE
Q psy2881         155 --------------------------------------------VPVI-----SEKKITDPAAIAFNAINIAQKKNTDIV  185 (302)
Q Consensus       155 --------------------------------------------~~~~-----~~~~~~~~~~~~~~~la~al~~~~~ll  185 (302)
                                                                  +.-.     .......-.+..+-+||+|++.+|++|
T Consensus       101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll  180 (330)
T PRK15093        101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL  180 (330)
T ss_pred             hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence                                                        0000     000000011122223999999999999


Q ss_pred             EEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         186 IVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       186 llDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+|||+   |...+..+++.|+++.+..+.+++++|||+..+...+
T Consensus       181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~  226 (330)
T PRK15093        181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA  226 (330)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence            999998   9999999999999998767899999999988876533

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.84  E-value=5.8e-21  Score=166.42  Aligned_cols=139  Identities=12%  Similarity=0.139  Sum_probs=98.5

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCCC-----------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYNDV-----------  155 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~~-----------  155 (302)
                      .+.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.... ..+.+..+...+           
T Consensus        13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~   92 (213)
T TIGR01277        13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG   92 (213)
T ss_pred             cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence            35689999999999999999999999999999999999999999998765321100 000011111000           


Q ss_pred             -CeeecC---------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881         156 -PVISEK---------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK  204 (302)
Q Consensus       156 -~~~~~~---------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~  204 (302)
                       ++....                           ......+..+-+||+|++.+|+++|+|||+   |..+...+++.|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~  172 (213)
T TIGR01277        93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK  172 (213)
T ss_pred             hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence             000000                           000111122223999999999999999997   9999999999999


Q ss_pred             HHHHHhchhhccccceeehhhc
Q psy2881         205 KIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       205 ~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ++.+..+.++++++|+...+.+
T Consensus       173 ~~~~~~~~tii~vsh~~~~~~~  194 (213)
T TIGR01277       173 QLCSERQRTLLMVTHHLSDARA  194 (213)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHh
Confidence            9976657899999998776543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.84  E-value=8.5e-21  Score=167.55  Aligned_cols=137  Identities=15%  Similarity=0.169  Sum_probs=98.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~---------  154 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.++|.++.....   ...+.+..+...         
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en   95 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN   95 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence            57899999999999999999999999999999999999999999998866432110   011111111100         


Q ss_pred             CCee--------------------------------e--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 VPVI--------------------------------S--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~~~--------------------------------~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.+.                                .  ........+..+-.||+|++.+|+++|+|||+   |+.+..
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  175 (234)
T cd03251          96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER  175 (234)
T ss_pred             hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence            0000                                0  00011122333345999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+++.|.++.+  +.++++++|+...+.
T Consensus       176 ~l~~~l~~~~~--~~tii~~sh~~~~~~  201 (234)
T cd03251         176 LVQAALERLMK--NRTTFVIAHRLSTIE  201 (234)
T ss_pred             HHHHHHHHhcC--CCEEEEEecCHHHHh
Confidence            99999998863  678999999877653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.84  E-value=8.9e-21  Score=169.42  Aligned_cols=142  Identities=10%  Similarity=0.127  Sum_probs=100.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------CC--C---hhHHHHH-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------TF--R---AAAYEQL-------  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~~--~---~~~~~ql-------  146 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+..        ..  .   ....+.+       
T Consensus        18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~   97 (251)
T PRK09544         18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK   97 (251)
T ss_pred             eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccccc
Confidence            47899999999999999999999999999999999999999999876521        00  0   0111111       


Q ss_pred             ----HHhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccc
Q psy2881         147 ----LILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFEL  217 (302)
Q Consensus       147 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~  217 (302)
                          ..+.+..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.+..+.+++++
T Consensus        98 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiiv  177 (251)
T PRK09544         98 KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV  177 (251)
T ss_pred             HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence                0011111111000  00011223334445999999999999999997   99999999999999876557899999


Q ss_pred             cceeehhhcCC
Q psy2881         218 PYEIFLIIDGN  228 (302)
Q Consensus       218 ~hd~~lvl~~~  228 (302)
                      +|+...+...+
T Consensus       178 sH~~~~i~~~~  188 (251)
T PRK09544        178 SHDLHLVMAKT  188 (251)
T ss_pred             ecCHHHHHHhC
Confidence            99987765543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.84  E-value=2.8e-21  Score=165.86  Aligned_cols=134  Identities=14%  Similarity=0.035  Sum_probs=97.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eee-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VIS-  159 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~-  159 (302)
                      ++++++||++++|++++|+||||||||||++.|+|++  +|++|+|.+++.++. ......+.+..+...+.    ... 
T Consensus        21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~   99 (192)
T cd03232          21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREA   99 (192)
T ss_pred             EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHH
Confidence            4789999999999999999999999999999999986  478999999987753 10011111111111100    000 


Q ss_pred             -----cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         160 -----EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       160 -----~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                           ........+..+-+||+|++.+|+++|+|||+   |..+...+++.|+++.+ .+.++++++|+..
T Consensus       100 l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~  169 (192)
T cd03232         100 LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPS  169 (192)
T ss_pred             HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCCh
Confidence                 00012223334445999999999999999997   99999999999999875 4789999999876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.84  E-value=4.7e-21  Score=168.12  Aligned_cols=139  Identities=14%  Similarity=0.125  Sum_probs=98.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------------------hHHHHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------------------AAYEQLLI  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------------------~~~~ql~~  148 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+....                  ...+.+..
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~   93 (223)
T TIGR03740        14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV   93 (223)
T ss_pred             EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence            578999999999999999999999999999999999999999999988653210                  11111111


Q ss_pred             hc--------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHH
Q psy2881         149 LG--------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV  209 (302)
Q Consensus       149 ~~--------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~  209 (302)
                      +.              +..++.-...  .......+..+-++|+|++.+|+++|+|||+   |..+...+++.|.++.+ 
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-  172 (223)
T TIGR03740        94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-  172 (223)
T ss_pred             HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-
Confidence            00              0011100000  0001112222334999999999999999997   99999999999999865 


Q ss_pred             hchhhccccceeehhhc
Q psy2881         210 IEKKIFELPYEIFLIID  226 (302)
Q Consensus       210 ~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+++++|||...+..
T Consensus       173 ~~~tiii~sH~~~~~~~  189 (223)
T TIGR03740       173 QGITVILSSHILSEVQQ  189 (223)
T ss_pred             CCCEEEEEcCCHHHHHH
Confidence            37889999998776544

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.84  E-value=1.5e-20  Score=168.27  Aligned_cols=141  Identities=13%  Similarity=0.108  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHH-HHHHHhccc---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAY-EQLLILGKY---------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~-~ql~~~~~~---------  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|    ++|+|.+.|.++...... ..+.+..+.         
T Consensus        17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~   96 (254)
T PRK10418         17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH   96 (254)
T ss_pred             ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence            578999999999999999999999999999999999998    899999988664211000 000000010         


Q ss_pred             ----------------------------CCCCe----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         153 ----------------------------NDVPV----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       153 ----------------------------~~~~~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                  .++.-    .. ........+..+-.||+|++.+|+++|+|||+   |..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~  176 (254)
T PRK10418         97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ  176 (254)
T ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence                                        11110    00 00011122333345999999999999999997   99899


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ..+.+.|+++.+..+.++++++|+...+...
T Consensus       177 ~~l~~~L~~~~~~~g~til~~sH~~~~~~~~  207 (254)
T PRK10418        177 ARILDLLESIVQKRALGMLLVTHDMGVVARL  207 (254)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence            9999999998776678999999987765443

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=6.2e-21  Score=170.73  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC----C---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV----P---  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~----~---  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+....   ..+.+..+...+    .   
T Consensus        16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   95 (255)
T PRK11231         16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE   95 (255)
T ss_pred             EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence            578999999999999999999999999999999999999999999998764321111   111111111110    0   


Q ss_pred             ---ee-------ecCCCCC--------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 ---VI-------SEKKITD--------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ---~~-------~~~~~~~--------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                         +.       .......                          ..+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~  175 (255)
T PRK11231         96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV  175 (255)
T ss_pred             HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence               00       0000000                          01111112999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+.+.|.++.+. +.+++++||+...+...
T Consensus       176 ~l~~~l~~l~~~-~~tiii~tH~~~~~~~~  204 (255)
T PRK11231        176 ELMRLMRELNTQ-GKTVVTVLHDLNQASRY  204 (255)
T ss_pred             HHHHHHHHHHHC-CCEEEEEECCHHHHHHh
Confidence            999999998654 78999999998765543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=9.5e-21  Score=171.45  Aligned_cols=141  Identities=18%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC--hh---HHHHHHHhcccCC---C--C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR--AA---AYEQLLILGKYND---V--P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~--~~---~~~ql~~~~~~~~---~--~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+...  ..   ....+.+..+...   .  .
T Consensus        16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   95 (275)
T PRK13639         16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT   95 (275)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence            47899999999999999999999999999999999999999999999977531  00   0111111111110   0  0


Q ss_pred             e-----eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V-----ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~-----~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +     +.. ...                             ....+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus        96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~  175 (275)
T PRK13639         96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ  175 (275)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence            0     000 000                             0011112223999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.|.++.+. +.++++++||...+...+
T Consensus       176 l~~~l~~l~~~-~~til~vtH~~~~~~~~~  204 (275)
T PRK13639        176 IMKLLYDLNKE-GITIIISTHDVDLVPVYA  204 (275)
T ss_pred             HHHHHHHHHHC-CCEEEEEecCHHHHHHhC
Confidence            99999999764 889999999988766543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.84  E-value=6.6e-21  Score=166.15  Aligned_cols=135  Identities=17%  Similarity=0.155  Sum_probs=95.5

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccCCCC----ee-
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYNDVP----VI-  158 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~~~~----~~-  158 (302)
                      |+||++++ ++++|+||||||||||++.|+|+++|++|+|.+.|.++....       ....+.+..+...+.    +. 
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            89999999 999999999999999999999999999999999887643110       000111111111100    00 


Q ss_pred             -----ecC---------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         159 -----SEK---------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       159 -----~~~---------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                           ...                           ......+..+-.||+|++.+|+++|+|||+   |+.+...+.+.|
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (214)
T cd03297          95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL  174 (214)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence                 000                           000111112223999999999999999998   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .++++..+.+++++|||...+..
T Consensus       175 ~~~~~~~~~tiii~sH~~~~~~~  197 (214)
T cd03297         175 KQIKKNLNIPVIFVTHDLSEAEY  197 (214)
T ss_pred             HHHHHHcCcEEEEEecCHHHHHH
Confidence            99977657899999998776543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.84  E-value=1.2e-20  Score=167.02  Aligned_cols=139  Identities=19%  Similarity=0.230  Sum_probs=100.6

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQLL  147 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql~  147 (302)
                      +++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....                    .+.+.
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~   93 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA   93 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence            6889999999999999999999999999999999999999999999876542111                    11111


Q ss_pred             H------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881         148 I------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK  204 (302)
Q Consensus       148 ~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~  204 (302)
                      .                  +.+..++.-...  .......+..+-+||+|++.+|+++++|||+   |..+...+.+.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~  173 (235)
T cd03299          94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK  173 (235)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence            0                  000111100000  0001122233334999999999999999997   9999999999999


Q ss_pred             HHHHHhchhhccccceeehhhc
Q psy2881         205 KIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       205 ~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ++....+.++++++|+...+.+
T Consensus       174 ~~~~~~~~tili~tH~~~~~~~  195 (235)
T cd03299         174 KIRKEFGVTVLHVTHDFEEAWA  195 (235)
T ss_pred             HHHHhcCCEEEEEecCHHHHHH
Confidence            9876557899999998776544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.84  E-value=1.2e-20  Score=156.65  Aligned_cols=130  Identities=15%  Similarity=0.201  Sum_probs=102.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDP  166 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~  166 (302)
                      +++++++|++.+|++++|+||||+||||+++.|+|.++|..|+|.+.+.+....... ++   .  ..+.+..+   ...
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~-~~---~--~~i~~~~q---lS~   83 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE-EL---R--RRIGYVPQ---LSG   83 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHH-HH---H--hceEEEee---CCH
Confidence            478899999999999999999999999999999999999999999998765432111 11   1  11222222   233


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+..+-.++++++.+|+++++|||+   |..+...+.+.+.++.+. +.++++++|+...+..
T Consensus        84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~  145 (157)
T cd00267          84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAEL  145 (157)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence            3455566999999999999999997   888899999999988764 6789999998776544

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=6.9e-21  Score=172.94  Aligned_cols=139  Identities=16%  Similarity=0.156  Sum_probs=100.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC---CeEEEecccCCChhHH---HHHHHhcccCC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK---KSVLLAACDTFRAAAY---EQLLILGKYND------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~---g~V~l~~~d~~~~~~~---~ql~~~~~~~~------  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++   |+|.+.|.++......   .++.+..+...      
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~  100 (282)
T PRK13640         21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA  100 (282)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence            47899999999999999999999999999999999999986   8999999876432211   11111111110      


Q ss_pred             -----CCeeecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 -----VPVISEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 -----~~~~~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                           +.+........                             ..+..+-+||+|++.+|+++|+|||+   |..+..
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~  180 (282)
T PRK13640        101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE  180 (282)
T ss_pred             CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence                 00000000001                             11111223999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+++.|.++.+..+.+++++||+...+.
T Consensus       181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~  208 (282)
T PRK13640        181 QILKLIRKLKKKNNLTVISITHDIDEAN  208 (282)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            9999999997766889999999877653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=5.5e-21  Score=173.17  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC--C---C--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND--V---P--  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~--~---~--  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+   .+.+..+...  +   .  
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  100 (277)
T PRK13642         21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE  100 (277)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence            3789999999999999999999999999999999999999999999987764321111   0111111100  0   0  


Q ss_pred             ----eeecCCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         157 ----VISEKKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       157 ----~~~~~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                          +......                             ....+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus       101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~  180 (277)
T PRK13642        101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM  180 (277)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence                0000000                             0011112223999999999999999997   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhh
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +.|.++.+..+.+++++||+...+.
T Consensus       181 ~~l~~l~~~~g~tiil~sH~~~~~~  205 (277)
T PRK13642        181 RVIHEIKEKYQLTVLSITHDLDEAA  205 (277)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            9999998766889999999988764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.84  E-value=7.8e-21  Score=168.15  Aligned_cols=136  Identities=18%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.+.......   ..+.+..+...         
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n   95 (237)
T cd03252          16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN   95 (237)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence            478999999999999999999999999999999999999999999998764321110   00000011000         


Q ss_pred             CCeee----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 VPVIS----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~~~~----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.+..                                  ........+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~  175 (237)
T cd03252          96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH  175 (237)
T ss_pred             hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence            00000                                  00001112223334999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.++.+  +.++++++||...+
T Consensus       176 ~l~~~l~~~~~--~~tiii~sH~~~~~  200 (237)
T cd03252         176 AIMRNMHDICA--GRTVIIIAHRLSTV  200 (237)
T ss_pred             HHHHHHHHhcC--CCEEEEEeCCHHHH
Confidence            99999999863  78999999987664

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.83  E-value=1.5e-20  Score=162.62  Aligned_cols=133  Identities=14%  Similarity=0.102  Sum_probs=94.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCChhH--HHHHHHhcccCCC----C-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFRAAA--YEQLLILGKYNDV----P-  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~~----~-  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++   |++|+|.+.|.++.....  ...+.+..+....    . 
T Consensus        21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv  100 (202)
T cd03233          21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTV  100 (202)
T ss_pred             eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcH
Confidence            47899999999999999999999999999999999999   889999999987643211  0011111111000    0 


Q ss_pred             -----ee-----e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         157 -----VI-----S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       157 -----~~-----~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                           +.     . ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.+..+.++++++|
T Consensus       101 ~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~  177 (202)
T cd03233         101 RETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY  177 (202)
T ss_pred             HHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence                 00     0 00011223344445999999999999999997   9999999999999987654555555444

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.83  E-value=8e-21  Score=170.74  Aligned_cols=140  Identities=17%  Similarity=0.196  Sum_probs=107.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-h----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-K----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK  161 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~  161 (302)
                      .+++|+||++.+||+++|||.+|||||||...|.|+++ +    .+|+|.+.|.|+.+....+..+..+....  ++++.
T Consensus        19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~--mIfQ~   96 (316)
T COG0444          19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIA--MIFQD   96 (316)
T ss_pred             EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEE--EEEcC
Confidence            47899999999999999999999999999999999997 3    46899999998876554422122222211  11110


Q ss_pred             ----------------------CCC----CHHHHH-----------------------------HHHHHHHHhCCCCeEE
Q psy2881         162 ----------------------KIT----DPAAIA-----------------------------FNAINIAQKKNTDIVI  186 (302)
Q Consensus       162 ----------------------~~~----~~~~~~-----------------------------~~~la~al~~~~~lll  186 (302)
                                            ...    +....+                             +-.||.|++.+|++||
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI  176 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI  176 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence                                  000    000011                             1129999999999999


Q ss_pred             EcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         187 VDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       187 lDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .||||   |...+.+++++|+++.++.+.+++++|||+.+|...+
T Consensus       177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~a  221 (316)
T COG0444         177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA  221 (316)
T ss_pred             eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence            99998   9999999999999999988999999999999887765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.83  E-value=1.5e-20  Score=166.88  Aligned_cols=138  Identities=14%  Similarity=0.131  Sum_probs=98.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~~-  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.......+    .+.+..+....    .+ 
T Consensus        16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   95 (242)
T TIGR03411        16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF   95 (242)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence            4789999999999999999999999999999999999999999999997654322110    01111111000    00 


Q ss_pred             -----eec-----------CC--------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         158 -----ISE-----------KK--------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       158 -----~~~-----------~~--------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                           ...           ..                          .....+..+-+||+|++.+|+++|+|||+   |
T Consensus        96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD  175 (242)
T TIGR03411        96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT  175 (242)
T ss_pred             HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence                 000           00                          00001111122999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+...+++.|+++.+  +.+++++||+...+..
T Consensus       176 ~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~  207 (242)
T TIGR03411       176 DEETEKTAELLKSLAG--KHSVVVVEHDMEFVRS  207 (242)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHH
Confidence            9999999999999865  5799999998776543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.83  E-value=5.7e-21  Score=171.19  Aligned_cols=139  Identities=13%  Similarity=0.096  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------------  140 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...                          
T Consensus        19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   98 (257)
T PRK10619         19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF   98 (257)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence            478999999999999999999999999999999999999999999998754210                          


Q ss_pred             ---------hHHHHHHH-------------------hcccCCCCeee---cCCCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881         141 ---------AAYEQLLI-------------------LGKYNDVPVIS---EKKITDPAAIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       141 ---------~~~~ql~~-------------------~~~~~~~~~~~---~~~~~~~~~~~~~~la~al~~~~~llllDE  189 (302)
                               ...+.+..                   +.+..++.-..   ........+..+-+||+|++.+|+++|+||
T Consensus        99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  178 (257)
T PRK10619         99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE  178 (257)
T ss_pred             cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence                     01111110                   00001110000   000011122233349999999999999999


Q ss_pred             CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |+   |+.+...+++.|+++.+ .+.+++++|||...+..
T Consensus       179 Pt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~  217 (257)
T PRK10619        179 PTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARH  217 (257)
T ss_pred             CcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence            97   99999999999999875 48899999998776543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=8.6e-21  Score=167.46  Aligned_cols=136  Identities=12%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCC------------CCe
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYND------------VPV  157 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~------------~~~  157 (302)
                      ++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.++...... ..+.+..+...            .++
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   96 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL   96 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence            78999999999999999999999999999999999999999998765321110 01111111100            000


Q ss_pred             eecCC-C--------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         158 ISEKK-I--------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       158 ~~~~~-~--------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                      ..... .                          ....+..+-.||+|++.+|+++|+|||+   |..+...+.+.|.++.
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~  176 (232)
T PRK10771         97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC  176 (232)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            00000 0                          0001111122899999999999999997   9999999999999987


Q ss_pred             HHhchhhccccceeehhhc
Q psy2881         208 KVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~  226 (302)
                      +..+.++++++||...+..
T Consensus       177 ~~~~~tiii~sH~~~~~~~  195 (232)
T PRK10771        177 QERQLTLLMVSHSLEDAAR  195 (232)
T ss_pred             HhcCCEEEEEECCHHHHHH
Confidence            7667899999998876544

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.83  E-value=3.8e-21  Score=173.42  Aligned_cols=141  Identities=13%  Similarity=0.127  Sum_probs=101.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhccc--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKY--------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~--------  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......      ..+.+..+.        
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  105 (268)
T PRK10419         26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR  105 (268)
T ss_pred             eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence            478999999999999999999999999999999999999999999998765322110      000001111        


Q ss_pred             --------------------------------CCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         153 --------------------------------NDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       153 --------------------------------~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                                                      .++.  ... ........+..+-+||+|++.+|+++|+|||+   |..
T Consensus       106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~  185 (268)
T PRK10419        106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV  185 (268)
T ss_pred             CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence                                            0010  000 00001112223334999999999999999997   888


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +...+.+.|.++.+..+.++++++|+...+...
T Consensus       186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~  218 (268)
T PRK10419        186 LQAGVIRLLKKLQQQFGTACLFITHDLRLVERF  218 (268)
T ss_pred             HHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh
Confidence            899999999999776678999999997765543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.2e-21  Score=179.49  Aligned_cols=137  Identities=15%  Similarity=0.158  Sum_probs=98.8

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh------hH-HHHHHHhccc-----------
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA------AA-YEQLLILGKY-----------  152 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~------~~-~~ql~~~~~~-----------  152 (302)
                      ++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...      .. ...+.+..+.           
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   95 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG   95 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence            79999999999999999999999999999999999999999988764321      00 0001111111           


Q ss_pred             --------------------CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         153 --------------------NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       153 --------------------~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                                          .++.-...  .......+..+-+||||++.+|+++|+|||+   |+.....+++.|+++.
T Consensus        96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~  175 (352)
T PRK11144         96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA  175 (352)
T ss_pred             HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence                                11100000  0001112223334999999999999999997   9999999999999998


Q ss_pred             HHhchhhccccceeehhhcC
Q psy2881         208 KVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +..+.+++++|||...+...
T Consensus       176 ~~~g~tii~vTHd~~~~~~~  195 (352)
T PRK11144        176 REINIPILYVSHSLDEILRL  195 (352)
T ss_pred             HhcCCeEEEEecCHHHHHHh
Confidence            76688999999998766553

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.83  E-value=1.6e-20  Score=166.25  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+.+..+...         
T Consensus        17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~   96 (238)
T cd03249          17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN   96 (238)
T ss_pred             cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence            478999999999999999999999999999999999999999999998765321110   00000000000         


Q ss_pred             CCee--e--------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 VPVI--S--------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~~~--~--------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.+.  .                                ........+..+-.||+|++.+|+++|+|||+   |+.+..
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~  176 (238)
T cd03249          97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK  176 (238)
T ss_pred             hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence            0000  0                                00011122233334999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|+++.  .+.++++++|+...+
T Consensus       177 ~l~~~l~~~~--~g~~vi~~sh~~~~~  201 (238)
T cd03249         177 LVQEALDRAM--KGRTTIVIAHRLSTI  201 (238)
T ss_pred             HHHHHHHHhc--CCCEEEEEeCCHHHH
Confidence            9999999885  478899999987654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.83  E-value=9.1e-21  Score=170.31  Aligned_cols=142  Identities=13%  Similarity=0.086  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChh-----H---HHHHHHhcccCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAA-----A---YEQLLILGKYNDV  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~-----~---~~ql~~~~~~~~~  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|+   +|+|.+.|.++....     .   ...+.+..+....
T Consensus        18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (262)
T PRK09984         18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL   97 (262)
T ss_pred             EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence            4789999999999999999999999999999999999876   499999997764211     0   0111111221110


Q ss_pred             ----Ce-----eecC------------CCCCHHHHH--------------------------HHHHHHHHhCCCCeEEEc
Q psy2881         156 ----PV-----ISEK------------KITDPAAIA--------------------------FNAINIAQKKNTDIVIVD  188 (302)
Q Consensus       156 ----~~-----~~~~------------~~~~~~~~~--------------------------~~~la~al~~~~~llllD  188 (302)
                          .+     +...            ........+                          +-+||+|++.+|++||+|
T Consensus        98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (262)
T PRK09984         98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD  177 (262)
T ss_pred             ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence                00     0000            000000111                          112899999999999999


Q ss_pred             CCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ||+   |......+++.|+++.+..+.++++++||...+...+
T Consensus       178 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~  220 (262)
T PRK09984        178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC  220 (262)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            997   9999999999999998766789999999987655433

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.83  E-value=1.2e-20  Score=166.75  Aligned_cols=136  Identities=18%  Similarity=0.173  Sum_probs=98.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....                     ..+.
T Consensus        15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n   94 (236)
T cd03253          15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN   94 (236)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence            3789999999999999999999999999999999999999999999886643211                     0011


Q ss_pred             HHHhccc------------CCCC-e---e---------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         146 LLILGKY------------NDVP-V---I---------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       146 l~~~~~~------------~~~~-~---~---------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +......            .++. .   .         .........+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~  174 (236)
T cd03253          95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER  174 (236)
T ss_pred             HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            1100000            0000 0   0         000011223334445999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.++.+  +.++++++|+...+
T Consensus       175 ~l~~~l~~~~~--~~tiii~sh~~~~~  199 (236)
T cd03253         175 EIQAALRDVSK--GRTTIVIAHRLSTI  199 (236)
T ss_pred             HHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence            99999998864  78999999987664

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.83  E-value=8.1e-21  Score=168.24  Aligned_cols=140  Identities=11%  Similarity=0.093  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql  146 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|.++.....                    .+.+
T Consensus        14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl   93 (237)
T TIGR00968        14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI   93 (237)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence            57899999999999999999999999999999999999999999998876532111                    1111


Q ss_pred             HHhc------------------ccCCCCee-ec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LILG------------------KYNDVPVI-SE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~~~------------------~~~~~~~~-~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      ....                  ...++.-. .. .......+..+-+|+++++.+|+++|+|||+   |..+...+++.|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l  173 (237)
T TIGR00968        94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL  173 (237)
T ss_pred             HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            1000                  00000000 00 0001111222223999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .++.+..+.+++++||+...+..
T Consensus       174 ~~~~~~~~~tvli~sH~~~~~~~  196 (237)
T TIGR00968       174 RKLHDEVHVTTVFVTHDQEEAME  196 (237)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHh
Confidence            99876557899999998776544

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.83  E-value=1.4e-20  Score=164.79  Aligned_cols=136  Identities=12%  Similarity=0.110  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~~----~  156 (302)
                      .+++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.+.......      ..+.+..+...+    .
T Consensus        19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (220)
T TIGR02982        19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT   98 (220)
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence            478999999999999999999999999999999999999999999998765321110      011111111000    0


Q ss_pred             e------eec-CCC-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 V------ISE-KKI-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ~------~~~-~~~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      .      ... ...                             ....+..+-+||++++.+|+++|+|||+   |..+..
T Consensus        99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~  178 (220)
T TIGR02982        99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR  178 (220)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence            0      000 000                             0011111223999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceee
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      .+++.|+++.+..+.++++++|+..
T Consensus       179 ~l~~~l~~~~~~~~~tii~~sh~~~  203 (220)
T TIGR02982       179 DVVELMQKLAREQGCTILIVTHDNR  203 (220)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            9999999998766889999999865

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.83  E-value=9.4e-21  Score=165.74  Aligned_cols=136  Identities=17%  Similarity=0.191  Sum_probs=97.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~----------  153 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....   ...+.+..+..          
T Consensus        18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~   97 (220)
T cd03245          18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN   97 (220)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence            47899999999999999999999999999999999999999999998865421110   00000001100          


Q ss_pred             --------------------CCCe-eec------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 --------------------DVPV-ISE------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 --------------------~~~~-~~~------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                          ++.- ...            .......+..+-.||+|++.+|+++|+|||+   |+.+..
T Consensus        98 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  177 (220)
T cd03245          98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE  177 (220)
T ss_pred             hhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence                                0000 000            0011122333445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|+++.+  +.+++++|||...+
T Consensus       178 ~l~~~l~~~~~--~~tii~~sH~~~~~  202 (220)
T cd03245         178 RLKERLRQLLG--DKTLIIITHRPSLL  202 (220)
T ss_pred             HHHHHHHHhcC--CCEEEEEeCCHHHH
Confidence            99999999865  37899999987653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.83  E-value=1.8e-20  Score=158.34  Aligned_cols=132  Identities=11%  Similarity=0.081  Sum_probs=96.6

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----ChhHHHHHHHhcccCCCCee---
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----RAAAYEQLLILGKYNDVPVI---  158 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----~~~~~~ql~~~~~~~~~~~~---  158 (302)
                      .++++++||++++|++++|+||||||||||++.+.    ++.|+|.+.+....    +.....|.. +.+.+++...   
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q~~-~l~~~~L~~~~~~   82 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQLQ-FLIDVGLGYLTLG   82 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhHHH-HHHHcCCCccccC
Confidence            35789999999999999999999999999999885    36899988765321    111222322 2233343211   


Q ss_pred             ecCCCCCHHHHHHHHHHHHHhCC--CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         159 SEKKITDPAAIAFNAINIAQKKN--TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~la~al~~~--~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .........+..+-++++|++.+  |+++|+|||+   |......+.+.|+++.+ .+.++++++|+...
T Consensus        83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~  151 (176)
T cd03238          83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDV  151 (176)
T ss_pred             CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH
Confidence            11122234455566799999999  9999999997   88889999999998865 58899999998654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.83  E-value=7.4e-21  Score=186.22  Aligned_cols=140  Identities=14%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN---------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~---------  153 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.    +.+..+..         
T Consensus        25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  104 (510)
T PRK15439         25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK  104 (510)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence            47899999999999999999999999999999999999999999999876543221110    00111111         


Q ss_pred             ------------------------CCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH
Q psy2881         154 ------------------------DVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK  204 (302)
Q Consensus       154 ------------------------~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~  204 (302)
                                              ++.-...  .......+..+-+||+|++.+|+++|+|||+   |+.+...+++.|+
T Consensus       105 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~  184 (510)
T PRK15439        105 ENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR  184 (510)
T ss_pred             HHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence                                    1100000  0000111222334999999999999999998   9999999999999


Q ss_pred             HHHHHhchhhccccceeehhhcC
Q psy2881         205 KIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       205 ~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ++++. +.+++++|||...+...
T Consensus       185 ~~~~~-g~tiiivtHd~~~~~~~  206 (510)
T PRK15439        185 ELLAQ-GVGIVFISHKLPEIRQL  206 (510)
T ss_pred             HHHHC-CCEEEEEeCCHHHHHHh
Confidence            98764 78999999998776553

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.83  E-value=1e-20  Score=169.41  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCC-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVP-------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~-------  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+.++.+.....       
T Consensus        15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   94 (256)
T TIGR03873        15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD   94 (256)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence            478999999999999999999999999999999999999999999998775432211   1111222221100       


Q ss_pred             ---ee--ec--CC--C-CCH--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 ---VI--SE--KK--I-TDP--------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ---~~--~~--~~--~-~~~--------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                         +.  ..  ..  . ...                          .+..+-+||+|++.+|+++|+|||+   |..+..
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  174 (256)
T TIGR03873        95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL  174 (256)
T ss_pred             HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence               00  00  00  0 000                          0111112899999999999999997   899999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+++.|+++.+. +.++++++|+...+...+
T Consensus       175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~  204 (256)
T TIGR03873       175 ETLALVRELAAT-GVTVVAALHDLNLAASYC  204 (256)
T ss_pred             HHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence            999999998753 789999999988765433

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1e-20  Score=160.40  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=97.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCChh--HH---HHHHHhcccCC-C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRAA--AY---EQLLILGKYND-V  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~~--~~---~ql~~~~~~~~-~  155 (302)
                      .++++||+.++++++++|+||+||||||+++++..+....     .|+|.+.|.+++...  ..   .++....|..+ .
T Consensus        21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF  100 (253)
T COG1117          21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF  100 (253)
T ss_pred             hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence            4789999999999999999999999999999999988754     499999999987542  11   11221222211 0


Q ss_pred             Ce--------eecCCC---CCHHHHH------------------------------HHHHHHHHhCCCCeEEEcCCC---
Q psy2881         156 PV--------ISEKKI---TDPAAIA------------------------------FNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       156 ~~--------~~~~~~---~~~~~~~------------------------------~~~la~al~~~~~llllDEP~---  191 (302)
                      |.        -....+   .+..+.+                              +-.||||++.+|++||+|||+   
T Consensus       101 p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSAL  180 (253)
T COG1117         101 PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL  180 (253)
T ss_pred             CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccccc
Confidence            10        000000   0000111                              112999999999999999998   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ||-+...+-+.+.++++  .-|++++||++..+.
T Consensus       181 DPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAa  212 (253)
T COG1117         181 DPISTLKIEELITELKK--KYTIVIVTHNMQQAA  212 (253)
T ss_pred             CchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHH
Confidence            99999888888888875  468999999766543

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.83  E-value=1.5e-20  Score=166.88  Aligned_cols=139  Identities=14%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHH----HHHhccc--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQ----LLILGKY--------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~--------  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|++  +|++|+|.+.|.++.+......    +.+..+.        
T Consensus        14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (243)
T TIGR01978        14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS   93 (243)
T ss_pred             EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence            4789999999999999999999999999999999995  6899999999876532111000    0000000        


Q ss_pred             ------------------------------------CCCC--eeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         153 ------------------------------------NDVP--VISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       153 ------------------------------------~~~~--~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                                                          .+++  ......  .....+..+-+||+|++.+|+++|+|||+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  173 (243)
T TIGR01978        94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS  173 (243)
T ss_pred             HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence                                                1111  000000  12223334445999999999999999998 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                        |+.+...+++.|+++.+ .+.++++++||...+..
T Consensus       174 ~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~  209 (243)
T TIGR01978       174 GLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNY  209 (243)
T ss_pred             cCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHh
Confidence              99999999999999865 47899999998776543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=99.83  E-value=6.3e-19  Score=159.92  Aligned_cols=172  Identities=30%  Similarity=0.340  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcC--cCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy2881           7 TRLKESLSKTACNLKSLIVNK--KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNL   84 (302)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   84 (302)
                      +.+.+.+..+++.+..++..-  ..-++.++++++.|++.||+.+++++|++.+.+.      .+.+.++.++.+.|.+.
T Consensus       107 ~~~~~e~~~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~------~~~~~~~~~~~~~l~~~  180 (282)
T TIGR03499       107 EELRKELEALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPER------ADAEDAWRWLREALEKM  180 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc------CCHHHHHHHHHHHHHHH
Confidence            455566666655555554421  1234678899999999999999999999988742      36677888999999999


Q ss_pred             hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-C-CeEEEecccCCChhHHHHHHHhcccCCCCeeecCC
Q psy2881          85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-K-KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK  162 (302)
Q Consensus        85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~-g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~  162 (302)
                      +.......++ ..+|.+++|+||+|||||||+.+|+..+... + .+|.+.+.|++|.++.+|+..|++..++++.....
T Consensus       181 l~~~~~~~~~-~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~  259 (282)
T TIGR03499       181 LPVKPEEDEI-LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD  259 (282)
T ss_pred             hccCCccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCC
Confidence            8632222233 3568899999999999999999999999865 4 69999999999999999999999999988865432


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         163 ITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       163 ~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                         +. ...+.+.+  ..++|+||+|+||
T Consensus       260 ---~~-~l~~~l~~--~~~~d~vliDt~G  282 (282)
T TIGR03499       260 ---PK-ELRKALDR--LRDKDLILIDTAG  282 (282)
T ss_pred             ---HH-HHHHHHHH--ccCCCEEEEeCCC
Confidence               22 23344443  3579999999997

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=1.4e-20  Score=161.80  Aligned_cols=136  Identities=14%  Similarity=0.131  Sum_probs=95.4

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh------------------HHHHHHHhc--
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA------------------AYEQLLILG--  150 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~------------------~~~ql~~~~--  150 (302)
                      ++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..+..                  ..+.+....  
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~   97 (195)
T PRK13541         18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI   97 (195)
T ss_pred             EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh
Confidence            499999999999999999999999999999999999999999987653211                  011111000  


Q ss_pred             -----------ccCCCCe-ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881         151 -----------KYNDVPV-IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI  214 (302)
Q Consensus       151 -----------~~~~~~~-~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i  214 (302)
                                 +..++.- .. ........+..+-++++|++.+|+++|+|||+   |+.+...+.+.|.+..+ .+.++
T Consensus        98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~ti  176 (195)
T PRK13541         98 YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIV  176 (195)
T ss_pred             cccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEE
Confidence                       0001100 00 00001112223334999999999999999997   88888889898876543 47899


Q ss_pred             ccccceeehhhcC
Q psy2881         215 FELPYEIFLIIDG  227 (302)
Q Consensus       215 ~~~~hd~~lvl~~  227 (302)
                      ++++|+...+-.+
T Consensus       177 ii~sh~~~~i~~~  189 (195)
T PRK13541        177 LLSSHLESSIKSA  189 (195)
T ss_pred             EEEeCCccccchh
Confidence            9999998776543

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.83  E-value=1.6e-20  Score=165.23  Aligned_cols=136  Identities=18%  Similarity=0.205  Sum_probs=97.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~---------  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....   ...+.+..+...         
T Consensus        17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~   96 (229)
T cd03254          17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN   96 (229)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence            47899999999999999999999999999999999999999999998865431100   000000000000         


Q ss_pred             CCeee----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 VPVIS----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~~~~----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.+..                                  ........+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~  176 (229)
T cd03254          97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK  176 (229)
T ss_pred             HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence            00000                                  00111223333445999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.++. . +.+++++||+...+
T Consensus       177 ~l~~~l~~~~-~-~~tii~~sh~~~~~  201 (229)
T cd03254         177 LIQEALEKLM-K-GRTSIIIAHRLSTI  201 (229)
T ss_pred             HHHHHHHHhc-C-CCEEEEEecCHHHH
Confidence            9999999885 3 78999999987654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.83  E-value=7e-21  Score=178.16  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=98.4

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh------H-HHHHHHhcccCCC----Ce--
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA------A-YEQLLILGKYNDV----PV--  157 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~------~-~~ql~~~~~~~~~----~~--  157 (302)
                      ++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....      . ...+.+..+...+    .+  
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   94 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG   94 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence            799999999999999999999999999999999999999999887653210      0 0011111111100    00  


Q ss_pred             ---e-ecC-C--------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         158 ---I-SEK-K--------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       158 ---~-~~~-~--------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                         + ... .                          .....+..+-+||+|++.+|+++|+|||+   |+.+...+++.|
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  174 (354)
T TIGR02142        95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL  174 (354)
T ss_pred             HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence               0 000 0                          00111222223999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++.+..+.+++++|||...+...
T Consensus       175 ~~l~~~~g~tiiivtH~~~~~~~~  198 (354)
T TIGR02142       175 ERLHAEFGIPILYVSHSLQEVLRL  198 (354)
T ss_pred             HHHHHhcCCEEEEEecCHHHHHHh
Confidence            999876688999999998876553

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.83  E-value=2.4e-20  Score=163.31  Aligned_cols=137  Identities=15%  Similarity=0.198  Sum_probs=97.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~-----------  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+   .+.+..+.           
T Consensus        18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en   97 (221)
T cd03244          18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN   97 (221)
T ss_pred             ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence            4789999999999999999999999999999999999999999999887653211100   00000000           


Q ss_pred             ------------------CCCC-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         153 ------------------NDVP-VI------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       153 ------------------~~~~-~~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                        .++. ..            .........+..+-+|++|++.+|+++|+|||+   |+.+...
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~  177 (221)
T cd03244          98 LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL  177 (221)
T ss_pred             hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence                              0000 00            000111122333345999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +.+.|+++.+  +.++++++|+...+.
T Consensus       178 l~~~l~~~~~--~~tii~~sh~~~~~~  202 (221)
T cd03244         178 IQKTIREAFK--DCTVLTIAHRLDTII  202 (221)
T ss_pred             HHHHHHHhcC--CCEEEEEeCCHHHHh
Confidence            9999998853  578999999876653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.83  E-value=3.1e-20  Score=165.39  Aligned_cols=138  Identities=13%  Similarity=0.112  Sum_probs=98.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCCh-----hHHHHHHHhccc----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRA-----AAYEQLLILGKY----  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~-----~~~~ql~~~~~~----  152 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|+     +|+|.++|.++...     .....+.+..+.    
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   94 (247)
T TIGR00972        15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF   94 (247)
T ss_pred             eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence            4789999999999999999999999999999999999988     99999988765321     000111111111    


Q ss_pred             ---------------------------------CCCC-----eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         153 ---------------------------------NDVP-----VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       153 ---------------------------------~~~~-----~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                       .++.     .... .......+..+-+||+|++.+|+++|+|||+  
T Consensus        95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~  174 (247)
T TIGR00972        95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA  174 (247)
T ss_pred             CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                                             0110     0000 0001122333334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+++.|+++.+  +.++++++|+...+..
T Consensus       175 LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~  208 (247)
T TIGR00972       175 LDPIATGKIEELIQELKK--KYTIVIVTHNMQQAAR  208 (247)
T ss_pred             CCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHH
Confidence             99999999999999875  3789999998776543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.83  E-value=2.4e-20  Score=163.89  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=97.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---------------------HHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---------------------YEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---------------------~~q  145 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....                     .+.
T Consensus        28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n  107 (226)
T cd03248          28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN  107 (226)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence            47899999999999999999999999999999999999999999999876421100                     000


Q ss_pred             HHHhc---------------------ccC--CCCee-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         146 LLILG---------------------KYN--DVPVI-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       146 l~~~~---------------------~~~--~~~~~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +....                     ..+  ++.-. . ........+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~  187 (226)
T cd03248         108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ  187 (226)
T ss_pred             hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            00000                     000  00000 0 00001122333334999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+.+.|+++.+  +.+++++|||...+.
T Consensus       188 ~l~~~l~~~~~--~~tii~~sh~~~~~~  213 (226)
T cd03248         188 QVQQALYDWPE--RRTVLVIAHRLSTVE  213 (226)
T ss_pred             HHHHHHHHHcC--CCEEEEEECCHHHHH
Confidence            99999998864  578999999987653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=165.23  Aligned_cols=138  Identities=12%  Similarity=0.096  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhH-------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAA-------------------  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~-------------------  142 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|     ++|+|.++|.++.+...                   
T Consensus        17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~   96 (250)
T PRK14247         17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN   96 (250)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence            478999999999999999999999999999999999874     69999999876532111                   


Q ss_pred             ---HHHHHHhc--------------------ccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         143 ---YEQLLILG--------------------KYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       143 ---~~ql~~~~--------------------~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                         .+.+....                    +..++.-     . .........+..+-++|+|++.+|+++|+|||+  
T Consensus        97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~  176 (250)
T PRK14247         97 LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN  176 (250)
T ss_pred             CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence               11111000                    0001000     0 000001112233344999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|.++.+  +.++++++|+...+..
T Consensus       177 LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~  210 (250)
T PRK14247        177 LDPENTAKIESLFLELKK--DMTIVLVTHFPQQAAR  210 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence             99999999999999853  6889999998776543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.82  E-value=1.6e-20  Score=183.59  Aligned_cols=141  Identities=15%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYND--------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~--------  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.......    .+.+..+...        
T Consensus        18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   97 (501)
T PRK10762         18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA   97 (501)
T ss_pred             EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence            4789999999999999999999999999999999999999999999987753221111    0111111100        


Q ss_pred             --CCe--eec--CCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         155 --VPV--ISE--KKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       155 --~~~--~~~--~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                        +.+  ...  ....+                             ..+..+-+||+|++.+|+++|+|||+   |+.+.
T Consensus        98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~  177 (501)
T PRK10762         98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET  177 (501)
T ss_pred             HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence              000  000  00000                             11112223999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ..+++.|.++.+. +.+++++|||...+...+
T Consensus       178 ~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~  208 (501)
T PRK10762        178 ESLFRVIRELKSQ-GRGIVYISHRLKEIFEIC  208 (501)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhC
Confidence            9999999999654 789999999987765543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4.4e-20  Score=164.42  Aligned_cols=138  Identities=11%  Similarity=0.057  Sum_probs=98.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCChhH---------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFRAAA---------------------  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~~~~---------------------  142 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++   |++|+|.+.|.++.....                     
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv   95 (246)
T PRK14269         16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI   95 (246)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence            57899999999999999999999999999999999974   689999999877532110                     


Q ss_pred             HHHHHH--------------------hcccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         143 YEQLLI--------------------LGKYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       143 ~~ql~~--------------------~~~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                      .+.+..                    +.+..++.-     . .........+..+-++|+|++.+|+++|+|||+   |+
T Consensus        96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~  175 (246)
T PRK14269         96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP  175 (246)
T ss_pred             HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            111100                    000111100     0 000011222333344999999999999999997   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+...+++.|.++.+  +.++++++|+...+..
T Consensus       176 ~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~  206 (246)
T PRK14269        176 ISSGVIEELLKELSH--NLSMIMVTHNMQQGKR  206 (246)
T ss_pred             HHHHHHHHHHHHHhC--CCEEEEEecCHHHHHh
Confidence            999999999998853  7899999998776543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.82  E-value=3.2e-20  Score=160.64  Aligned_cols=140  Identities=17%  Similarity=0.143  Sum_probs=99.4

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH----HHHHHH--------hcccC
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA----YEQLLI--------LGKYN  153 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~----~~ql~~--------~~~~~  153 (302)
                      +++++|+||++++|+-++|+||||||||||++.++|.+.|++|.+.+.|....+...    ++.+..        +....
T Consensus        44 k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~  123 (257)
T COG1119          44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE  123 (257)
T ss_pred             EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccccc
Confidence            468999999999999999999999999999999999999999999999876432221    111111        11100


Q ss_pred             C------------CCeeecCCCCCHH----------------------------HHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         154 D------------VPVISEKKITDPA----------------------------AIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       154 ~------------~~~~~~~~~~~~~----------------------------~~~~~~la~al~~~~~llllDEP~--  191 (302)
                      .            +.++..  ..+..                            +..+-.||||++.+|+++|||||+  
T Consensus       124 ~v~dvVlSg~~~siG~y~~--~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G  201 (257)
T COG1119         124 TVRDVVLSGFFASIGIYQE--DLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG  201 (257)
T ss_pred             ccceeeeeccccccccccc--CCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence            0            011110  11111                            111112999999999999999996  


Q ss_pred             -CccchHHHHHHHHHHHHHh-chhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVI-EKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~-~~~i~~~~hd~~lvl~~  227 (302)
                       |..++..+.+.|.++.... +++++++||....+..+
T Consensus       202 LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~  239 (257)
T COG1119         202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC  239 (257)
T ss_pred             CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc
Confidence             9999999999999987642 56788999976665444

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4.6e-20  Score=164.83  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=97.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCC--ChhH---HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTF--RAAA---YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~--~~~~---~~ql~~~~~~~---  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++.  +...   ...+.+..+..   
T Consensus        18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   97 (253)
T PRK14267         18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF   97 (253)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence            578999999999999999999999999999999999987     4899999987653  1100   00111111110   


Q ss_pred             ------------------------------------CCCe-----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         154 ------------------------------------DVPV-----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       154 ------------------------------------~~~~-----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                                                          ++.-     .. ........+..+-+||+|++.+|+++|+|||+
T Consensus        98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  177 (253)
T PRK14267         98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT  177 (253)
T ss_pred             CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                                                0000     00 00000112222334999999999999999997


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                         |+.+...+.+.|+++.+  +.++++++|+...+..
T Consensus       178 ~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~  213 (253)
T PRK14267        178 ANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAAR  213 (253)
T ss_pred             ccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHh
Confidence               99999999999999864  5799999998776544

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.82  E-value=3.1e-20  Score=185.94  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=101.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~----------  153 (302)
                      ++++|+|+++++||.++|+|+||||||||+|.|+|++.|+.|+|.++|.|......   ++|+.++.+..          
T Consensus       487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN  566 (709)
T COG2274         487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN  566 (709)
T ss_pred             chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHH
Confidence            47889999999999999999999999999999999999999999999998754322   12222222210          


Q ss_pred             ---------------------------------CCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 ---------------------------------DVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 ---------------------------------~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                       +.++-....+..-.++.+-+||||+.++|+++|+||||   |+.+.+
T Consensus       567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~  646 (709)
T COG2274         567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA  646 (709)
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence                                             01111111122233344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.++..  ++|+++++|....+
T Consensus       647 ~I~~~L~~~~~--~~T~I~IaHRl~ti  671 (709)
T COG2274         647 IILQNLLQILQ--GRTVIIIAHRLSTI  671 (709)
T ss_pred             HHHHHHHHHhc--CCeEEEEEccchHh
Confidence            99999999863  67888999865443

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.9e-20  Score=166.71  Aligned_cols=138  Identities=9%  Similarity=0.058  Sum_probs=97.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--hH---HHHHHHhccc----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--AA---YEQLLILGKY----  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~~---~~ql~~~~~~----  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++...  ..   ...+.+..+.    
T Consensus        33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  112 (267)
T PRK14235         33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF  112 (267)
T ss_pred             EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence            478999999999999999999999999999999999974     899999998765320  00   0001111111    


Q ss_pred             ----------------------------------CCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         153 ----------------------------------NDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       153 ----------------------------------~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                                                        .++.-     . .........+..+-+||+|++.+|++||+|||+ 
T Consensus       113 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  192 (267)
T PRK14235        113 PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS  192 (267)
T ss_pred             CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence                                              01100     0 000001112233334999999999999999997 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                        |+.+...+++.|+++.+  +.++++++|+...+..
T Consensus       193 ~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~  227 (267)
T PRK14235        193 ALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAAR  227 (267)
T ss_pred             CCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHh
Confidence              99999999999999864  5789999998766433

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.82  E-value=3.8e-20  Score=160.52  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=98.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~--------  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+.......   .++.+..+...+        
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~  101 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN  101 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence            478999999999999999999999999999999999999999999998765321111   111111111100        


Q ss_pred             -Ceeec---------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcc
Q psy2881         156 -PVISE---------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFE  216 (302)
Q Consensus       156 -~~~~~---------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~  216 (302)
                       .+...               .......+..+-+||+|++.+|+++|+|||+   |+.....+++.|+++.  .+.++++
T Consensus       102 l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii  179 (207)
T cd03369         102 LDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILT  179 (207)
T ss_pred             hcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence             00000               0001112233334999999999999999997   8999999999999874  2789999


Q ss_pred             ccceeehhh
Q psy2881         217 LPYEIFLII  225 (302)
Q Consensus       217 ~~hd~~lvl  225 (302)
                      +||+...+.
T Consensus       180 ~th~~~~~~  188 (207)
T cd03369         180 IAHRLRTII  188 (207)
T ss_pred             EeCCHHHHh
Confidence            999877653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=5.4e-20  Score=156.09  Aligned_cols=144  Identities=16%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCee-------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI-------  158 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~-------  158 (302)
                      +++++++|+++.+|+++.++|.|||||||+++.|+|.+.|++|+|.++|.|+.+.+..+.-.++++-++-|..       
T Consensus        19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT   98 (263)
T COG1101          19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT   98 (263)
T ss_pred             HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence            3578899999999999999999999999999999999999999999999999876554332222221111000       


Q ss_pred             --------e---cCCCCCH----------------------------------HHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         159 --------S---EKKITDP----------------------------------AAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       159 --------~---~~~~~~~----------------------------------~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                              .   ...+...                                  .+...-.+..|-.+.|+++++||-|  
T Consensus        99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA  178 (263)
T COG1101          99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA  178 (263)
T ss_pred             HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence                    0   0000000                                  0000111667888999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT  229 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~  229 (302)
                       ||.+...+|+.-.++.+..+.|.+++||++..+++++.
T Consensus       179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~  217 (263)
T COG1101         179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGN  217 (263)
T ss_pred             CCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCC
Confidence             99999999999999999989999999999998888774

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.2e-20  Score=164.53  Aligned_cols=138  Identities=10%  Similarity=0.090  Sum_probs=96.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h--H-HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A--A-YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~---  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|++.     |++|+|.++|.++...  .  . ...+.+..+..   
T Consensus        20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~   99 (253)
T PRK14242         20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF   99 (253)
T ss_pred             eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence            47899999999999999999999999999999999864     5789999988765310  0  0 00111111110   


Q ss_pred             ----------------------------------CCCe-----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         154 ----------------------------------DVPV-----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       154 ----------------------------------~~~~-----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                        ++.-     .. ........+..+-+||+|++.+|+++|+|||+  
T Consensus       100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~  179 (253)
T PRK14242        100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA  179 (253)
T ss_pred             cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                                              0000     00 00001112233334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|+++.+  +.++++++||...+..
T Consensus       180 LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~~~~~  213 (253)
T PRK14242        180 LDPIATQKIEELIHELKA--RYTIIIVTHNMQQAAR  213 (253)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCeEEEEEecHHHHHH
Confidence             99999999999999853  6789999998776543

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.82  E-value=4.2e-20  Score=164.58  Aligned_cols=139  Identities=21%  Similarity=0.241  Sum_probs=98.0

Q ss_pred             cCCCcceec-----CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC----------CChhHHHHHHHh---
Q psy2881          88 LEKPLIFKK-----CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT----------FRAAAYEQLLIL---  149 (302)
Q Consensus        88 ~l~~i~l~~-----~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~----------~~~~~~~ql~~~---  149 (302)
                      .+.++++++     .+|++++|+||||||||||+++|+|+++|++|+|.+.+..+          +.....+.+..+   
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~   88 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKD   88 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhh
Confidence            455666665     47999999999999999999999999999999998877321          111222222211   


Q ss_pred             -----------cccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchh
Q psy2881         150 -----------GKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKK  213 (302)
Q Consensus       150 -----------~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~  213 (302)
                                 .+.+++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+.+.|+++++..+.+
T Consensus        89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t  168 (246)
T cd03237          89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT  168 (246)
T ss_pred             ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence                       1111111000  00111223344456999999999999999998   9999999999999998766889


Q ss_pred             hccccceeehhhc
Q psy2881         214 IFELPYEIFLIID  226 (302)
Q Consensus       214 i~~~~hd~~lvl~  226 (302)
                      +++++||...+..
T Consensus       169 iiivsHd~~~~~~  181 (246)
T cd03237         169 AFVVEHDIIMIDY  181 (246)
T ss_pred             EEEEeCCHHHHHH
Confidence            9999999876654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.82  E-value=4.4e-20  Score=179.97  Aligned_cols=140  Identities=13%  Similarity=0.032  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCee-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVI-----  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~-----  158 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.......   ..+.+..+.....++     
T Consensus        17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~   96 (490)
T PRK10938         17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED   96 (490)
T ss_pred             eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence            478999999999999999999999999999999999999999999887665322211   112222221111000     


Q ss_pred             ----ecCC------------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881         159 ----SEKK------------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR  201 (302)
Q Consensus       159 ----~~~~------------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~  201 (302)
                          ....                              .....+..+-+||+|++.+|+++|+|||+   |+.+...+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~  176 (490)
T PRK10938         97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE  176 (490)
T ss_pred             hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                0000                              00001111223999999999999999998   9999999999


Q ss_pred             HHHHHHHHhchhhccccceeehhhcC
Q psy2881         202 ELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       202 ~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .|.++.+. +.++++++||...+.+.
T Consensus       177 ~l~~~~~~-g~tvii~tH~~~~~~~~  201 (490)
T PRK10938        177 LLASLHQS-GITLVLVLNRFDEIPDF  201 (490)
T ss_pred             HHHHHHhc-CCeEEEEeCCHHHHHhh
Confidence            99999764 78999999998766543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.82  E-value=7.8e-20  Score=160.73  Aligned_cols=136  Identities=14%  Similarity=0.112  Sum_probs=96.8

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCCh-------------------hHH
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFRA-------------------AAY  143 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~~-------------------~~~  143 (302)
                      +++++++||++.+|++++|+||||||||||+++|+|+++   |++|+|.+.|.+....                   ...
T Consensus        20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~   99 (226)
T cd03234          20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR   99 (226)
T ss_pred             cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence            457899999999999999999999999999999999999   8999999988764210                   111


Q ss_pred             HHHHHhccc----------------------CCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         144 EQLLILGKY----------------------NDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       144 ~ql~~~~~~----------------------~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                      +.+......                      .++.-..  ........+..+-++++|++.+|+++|+|||+   |+.+.
T Consensus       100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~  179 (226)
T cd03234         100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA  179 (226)
T ss_pred             HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence            111110000                      0000000  00001112222234999999999999999997   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceee
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ..+.+.|.++.+. +.++++++|+..
T Consensus       180 ~~~~~~l~~~~~~-~~tiii~sh~~~  204 (226)
T cd03234         180 LNLVSTLSQLARR-NRIVILTIHQPR  204 (226)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEecCCC
Confidence            9999999998754 789999999873

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.82  E-value=3.8e-20  Score=160.17  Aligned_cols=139  Identities=17%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHh---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLIL---------  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~---------  149 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.      +.  +.....+.+...         
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~   98 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYE   98 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHH
Confidence            4789999999999999999999999999999999999999999987651      11  111111111110         


Q ss_pred             --cccCCC-----------C-ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHh
Q psy2881         150 --GKYNDV-----------P-VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVI  210 (302)
Q Consensus       150 --~~~~~~-----------~-~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~  210 (302)
                        .+..++           . .. .........+..+-+||+|++.+|+++|+|||+   |+.....+++. +.++.+. 
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-  177 (204)
T cd03250          99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-  177 (204)
T ss_pred             HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-
Confidence              000010           0 00 011122334455566999999999999999997   88777778774 4555443 


Q ss_pred             chhhccccceeehhhc
Q psy2881         211 EKKIFELPYEIFLIID  226 (302)
Q Consensus       211 ~~~i~~~~hd~~lvl~  226 (302)
                      +.++++++|+...+..
T Consensus       178 ~~tvi~~sh~~~~~~~  193 (204)
T cd03250         178 NKTRILVTHQLQLLPH  193 (204)
T ss_pred             CCEEEEEeCCHHHHhh
Confidence            7899999998766543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.82  E-value=3.6e-20  Score=167.38  Aligned_cols=140  Identities=14%  Similarity=0.154  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--------CCeEEEecccCCChhHH---HHHHHhcccCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--------KKSVLLAACDTFRAAAY---EQLLILGKYND-  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--------~g~V~l~~~d~~~~~~~---~ql~~~~~~~~-  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|+        +|+|.+.|.+.......   ....+..+... 
T Consensus        15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~   94 (272)
T PRK13547         15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP   94 (272)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence            4789999999999999999999999999999999999987        89999998775432111   11111111110 


Q ss_pred             ---CC------e--eecCC--C---CCH--------------------------HHHHHHHHHHHHh---------CCCC
Q psy2881         155 ---VP------V--ISEKK--I---TDP--------------------------AAIAFNAINIAQK---------KNTD  183 (302)
Q Consensus       155 ---~~------~--~~~~~--~---~~~--------------------------~~~~~~~la~al~---------~~~~  183 (302)
                         ..      +  .....  .   ...                          .+..+-+|++|++         .+|+
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~  174 (272)
T PRK13547         95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR  174 (272)
T ss_pred             CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence               00      0  00000  0   000                          0111112899999         4999


Q ss_pred             eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         184 IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       184 llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ++|+|||+   |+.+...+++.|.++.+..+.++++++||...+..
T Consensus       175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~  220 (272)
T PRK13547        175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR  220 (272)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            99999997   99999999999999877657899999998776544

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=6.2e-20  Score=164.16  Aligned_cols=138  Identities=9%  Similarity=0.073  Sum_probs=96.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h---HHHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A---AYEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~~~-  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++...  .   ....+.+..+.... 
T Consensus        21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  100 (254)
T PRK14273         21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF  100 (254)
T ss_pred             eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence            478999999999999999999999999999999999987     489999988764310  0   00111111111000 


Q ss_pred             --C------eeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --P------VISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --~------~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                        .      +...                                  .......+..+-+||+|++.+|+++|+|||+  
T Consensus       101 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~  180 (254)
T PRK14273        101 LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA  180 (254)
T ss_pred             cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence              0      0000                                  0001111222334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |..+...+++.|.++.+  +.++++++|+...+..
T Consensus       181 LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~~~~~  214 (254)
T PRK14273        181 LDPISTGKIEELIINLKE--SYTIIIVTHNMQQAGR  214 (254)
T ss_pred             cCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence             99999999999999853  5789999998776543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3e-20  Score=181.93  Aligned_cols=141  Identities=15%  Similarity=0.106  Sum_probs=101.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~~-  157 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+    .+.+..+...+    .+ 
T Consensus        19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   98 (510)
T PRK09700         19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL   98 (510)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence            4789999999999999999999999999999999999999999999987764322111    01111111100    00 


Q ss_pred             ----eec-----CCCC---C-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         158 ----ISE-----KKIT---D-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       158 ----~~~-----~~~~---~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                          +..     ..+.   +                             ..+..+-+||+|++.+|+++|+|||+   |+
T Consensus        99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~  178 (510)
T PRK09700         99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN  178 (510)
T ss_pred             HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence                000     0000   0                             01111123999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+...+++.|+++++. +.+++++|||...+...+
T Consensus       179 ~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~  212 (510)
T PRK09700        179 KEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRIC  212 (510)
T ss_pred             HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhC
Confidence            9999999999999764 889999999988766543

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=6.3e-20  Score=165.55  Aligned_cols=140  Identities=12%  Similarity=0.125  Sum_probs=97.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCC----hhH-HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFR----AAA-YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~----~~~-~~ql~~~~~~~~~-  155 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++     |++|+|.+.|.++..    ... ...+.+..+...+ 
T Consensus        27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  106 (269)
T PRK14259         27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF  106 (269)
T ss_pred             EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence            47899999999999999999999999999999999987     589999998876431    000 0011111111000 


Q ss_pred             --------Ceeec--------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         156 --------PVISE--------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       156 --------~~~~~--------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                              .+...                                .......+..+-+||+|++.+|+++|+|||+   |
T Consensus       107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD  186 (269)
T PRK14259        107 PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD  186 (269)
T ss_pred             hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence                    00000                                0001112222334999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.+...+++.|.++.+  +.+++++||+...+...+
T Consensus       187 ~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~  220 (269)
T PRK14259        187 PISTLKIEETMHELKK--NFTIVIVTHNMQQAVRVS  220 (269)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhc
Confidence            9999999999998853  578999999876654433

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.81  E-value=6e-20  Score=163.94  Aligned_cols=138  Identities=17%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhH----------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAA----------------------  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~----------------------  142 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+  ++|++|+|.+.|.++.....                      
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~  100 (252)
T CHL00131         21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS  100 (252)
T ss_pred             EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence            478999999999999999999999999999999998  57899999998866432110                      


Q ss_pred             -HHHHHHh-------------------------cccCCCC--eeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         143 -YEQLLIL-------------------------GKYNDVP--VISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       143 -~~ql~~~-------------------------~~~~~~~--~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                       .+.+...                         ....+++  ......  .....+..+-+||+|++.+|+++|+|||+ 
T Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~  180 (252)
T CHL00131        101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS  180 (252)
T ss_pred             HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence             0111100                         0001111  000000  12223344445999999999999999997 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                        |..+...+++.|+++.+ .+.+++++|||..++.
T Consensus       181 ~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~  215 (252)
T CHL00131        181 GLDIDALKIIAEGINKLMT-SENSIILITHYQRLLD  215 (252)
T ss_pred             cCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH
Confidence              99999999999999875 4789999999877643

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=6e-20  Score=164.65  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=96.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh---------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA---------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~---------------------  140 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++.+.                     
T Consensus        18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   97 (258)
T PRK14241         18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF   97 (258)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence            478999999999999999999999999999999999874     699999988765210                     


Q ss_pred             ---hHHHHHHHhc-------------------ccCCCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         141 ---AAYEQLLILG-------------------KYNDVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       141 ---~~~~ql~~~~-------------------~~~~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                         ...+.+....                   +..++.     .. .........+..+-+||+|++.+|+++|+|||+ 
T Consensus        98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  177 (258)
T PRK14241         98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCS  177 (258)
T ss_pred             CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence               0011111000                   000000     00 000001112223334999999999999999997 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                        |+.+...+++.|.++.+  +.++++++|+...+..
T Consensus       178 ~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~  212 (258)
T PRK14241        178 ALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAAR  212 (258)
T ss_pred             cCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHH
Confidence              99999999999999853  5789999998776544

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.81  E-value=7.6e-20  Score=162.85  Aligned_cols=138  Identities=14%  Similarity=0.152  Sum_probs=98.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHH----HHHhccc--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQ----LLILGKY--------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~--------  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|++  +|++|+|.+.|.+..+......    +.+..+.        
T Consensus        15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   94 (248)
T PRK09580         15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS   94 (248)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence            4789999999999999999999999999999999995  6899999999876532111000    0000000        


Q ss_pred             ------------------------------------CCCC--eeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         153 ------------------------------------NDVP--VISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       153 ------------------------------------~~~~--~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                                                          .+++  .....  ......+..+-+||+|++.+|+++|+|||+ 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~  174 (248)
T PRK09580         95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS  174 (248)
T ss_pred             HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence                                                0000  00000  012223334445999999999999999998 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                        |..+...+.+.|+++.+ .+.+++++|||..++.
T Consensus       175 ~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~  209 (248)
T PRK09580        175 GLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILD  209 (248)
T ss_pred             cCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence              99999999999998865 4789999999876543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.81  E-value=3.3e-20  Score=176.80  Aligned_cols=141  Identities=13%  Similarity=0.117  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH----HHhccc----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL----LILGKY----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql----~~~~~~----------  152 (302)
                      ++++++||++.+||+++|+|.||||||||+|.|+|.++|++|+|.++|......+..+-.    ....|.          
T Consensus        22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa  101 (500)
T COG1129          22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA  101 (500)
T ss_pred             eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence            479999999999999999999999999999999999999999999999876422211110    000000          


Q ss_pred             -------------------------------CCCCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         153 -------------------------------NDVPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       153 -------------------------------~~~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                     .++...  ..-......+...-.||+|+..++++||+||||   .....
T Consensus       102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~  181 (500)
T COG1129         102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET  181 (500)
T ss_pred             HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence                                           000000  000000111222223999999999999999998   55666


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ..+++.++++.+ .|.+++++||.+..+..-+
T Consensus       182 ~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~  212 (500)
T COG1129         182 ERLFDLIRRLKA-QGVAIIYISHRLDEVFEIA  212 (500)
T ss_pred             HHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhc
Confidence            778999999875 5899999999877666543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2e-20  Score=187.16  Aligned_cols=142  Identities=12%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------HHHHhcccC--CC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------QLLILGKYN--DV---  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------ql~~~~~~~--~~---  155 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+      .+.++.+..  .+   
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            4788999999999999999999999999999999999999999999987764321110      011111110  00   


Q ss_pred             -Ce-------e-ecC-----------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         156 -PV-------I-SEK-----------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       156 -~~-------~-~~~-----------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                       .+       . ...                             ....-.+..+-+||+|++.+|++||+|||+   |..
T Consensus       418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~  497 (623)
T PRK10261        418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS  497 (623)
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence             00       0 000                             000011112223999999999999999998   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+..+++.|+++.+..+.+++++|||+..+...+
T Consensus       498 ~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~  531 (623)
T PRK10261        498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS  531 (623)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            9999999999998777889999999998776644

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=7.7e-20  Score=163.98  Aligned_cols=139  Identities=13%  Similarity=0.074  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChh----H-HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAA----A-YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~----~-~~ql~~~~~~~---  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++....    . ...+.+..+..   
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  105 (258)
T PRK14268         26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF  105 (258)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence            478999999999999999999999999999999999875     7999999887643110    0 00011111110   


Q ss_pred             ---------------------------------CCC-e----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         154 ---------------------------------DVP-V----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       154 ---------------------------------~~~-~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                                                       ++. .    .. ........+..+-+||+|++.+|+++|+|||+   
T Consensus       106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L  185 (258)
T PRK14268        106 PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL  185 (258)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence                                             000 0    00 00001112223334999999999999999997   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      |..+...+++.|+++.+  +.++++++||...+.+.
T Consensus       186 D~~~~~~l~~~l~~l~~--~~tiiivsH~~~~~~~~  219 (258)
T PRK14268        186 DPISTARIEDLIMNLKK--DYTIVIVTHNMQQAARI  219 (258)
T ss_pred             CHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHHh
Confidence            99999999999999853  68999999998765443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.81  E-value=3.6e-20  Score=182.18  Aligned_cols=141  Identities=11%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhHHH-------HHHHhcccCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAAYE-------QLLILGKYND  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++......+       .+.++.+...
T Consensus        23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~  102 (529)
T PRK15134         23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM  102 (529)
T ss_pred             eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence            578999999999999999999999999999999999986     6899999887753221100       0111111100


Q ss_pred             --C-Ce-------------eecC-----------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881         155 --V-PV-------------ISEK-----------------------------KITDPAAIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       155 --~-~~-------------~~~~-----------------------------~~~~~~~~~~~~la~al~~~~~llllDE  189 (302)
                        . +.             ....                             ......+..+-+||+|++.+|+++|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE  182 (529)
T PRK15134        103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE  182 (529)
T ss_pred             hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence              0 00             0000                             0001111222249999999999999999


Q ss_pred             CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      |+   |+.+...+++.|+++++..+.+++++|||...+...
T Consensus       183 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~  223 (529)
T PRK15134        183 PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKL  223 (529)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHh
Confidence            98   999999999999999776688999999998876553

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=4.5e-20  Score=159.83  Aligned_cols=141  Identities=20%  Similarity=0.190  Sum_probs=103.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----------ChhHHHHHHHhcccCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----------RAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----------~~~~~~ql~~~~~~~~~~  156 (302)
                      .+|+|+||++.+|+.++|||+||||||||++.|+|.++|++|+|.+.|.-..          ....++.+..++..+|..
T Consensus        41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~  120 (249)
T COG1134          41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT  120 (249)
T ss_pred             EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence            4799999999999999999999999999999999999999999999875321          122344444433333321


Q ss_pred             e-------------------ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchh
Q psy2881         157 V-------------------IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKK  213 (302)
Q Consensus       157 ~-------------------~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~  213 (302)
                      .                   .. ........+.++-+++-|...+||++|+||..   |..-++.-.+.+.++.+. +.+
T Consensus       121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~t  199 (249)
T COG1134         121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKT  199 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCE
Confidence            1                   00 00011233444555677788999999999984   888888888888888665 589


Q ss_pred             hccccceeehhhcCC
Q psy2881         214 IFELPYEIFLIIDGN  228 (302)
Q Consensus       214 i~~~~hd~~lvl~~~  228 (302)
                      ++++|||...+.+.|
T Consensus       200 iv~VSHd~~~I~~~C  214 (249)
T COG1134         200 IVLVSHDLGAIKQYC  214 (249)
T ss_pred             EEEEECCHHHHHHhc
Confidence            999999988776655

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.81  E-value=1.4e-20  Score=164.16  Aligned_cols=137  Identities=16%  Similarity=0.020  Sum_probs=94.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCC---------ChhHHHHHHHhcccCCCCe
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTF---------RAAAYEQLLILGKYNDVPV  157 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~---------~~~~~~ql~~~~~~~~~~~  157 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|. +.+....         .....+.+..+....+...
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~   81 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG   81 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence            57899999999999999999999999999999999999999997 6554321         1122333333222111100


Q ss_pred             ---------------ee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccc
Q psy2881         158 ---------------IS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFEL  217 (302)
Q Consensus       158 ---------------~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~  217 (302)
                                     ..  ........+..+-++|+|++.+|+++|+|||+   |+.+...+++.+.+..+  +.+++++
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~v  159 (213)
T PRK15177         82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVL  159 (213)
T ss_pred             HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEE
Confidence                           00  00001112233335999999999999999996   88888888887765433  3578899


Q ss_pred             cceeehhhc
Q psy2881         218 PYEIFLIID  226 (302)
Q Consensus       218 ~hd~~lvl~  226 (302)
                      +|++..+..
T Consensus       160 sH~~~~~~~  168 (213)
T PRK15177        160 THNPRLIKE  168 (213)
T ss_pred             ECCHHHHHH
Confidence            998876543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.81  E-value=4.9e-20  Score=172.83  Aligned_cols=140  Identities=14%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-----------------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-----------------------  144 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-----------------------  144 (302)
                      +.++|||++.+|+|.+|+|.||+|||||+++|.|+++|++|+|.++|+...-.+..+                       
T Consensus        19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E   98 (501)
T COG3845          19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE   98 (501)
T ss_pred             ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence            678999999999999999999999999999999999999999999998764222111                       


Q ss_pred             ---------------------HHHHhcccCCCCeeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         145 ---------------------QLLILGKYNDVPVISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       145 ---------------------ql~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                           .+....+++++++-....  .....+..+--|-+||.+++++||+||||   -|+..++
T Consensus        99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~  178 (501)
T COG3845          99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE  178 (501)
T ss_pred             hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                                 111222222221100000  00001111111778999999999999999   6777788


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.|+.+++. |++++++||-+..++..+
T Consensus       179 lf~~l~~l~~~-G~tIi~ITHKL~Ev~~ia  207 (501)
T COG3845         179 LFEILRRLAAE-GKTIIFITHKLKEVMAIA  207 (501)
T ss_pred             HHHHHHHHHHC-CCEEEEEeccHHHHHHhh
Confidence            99999988764 999999999777666543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.81  E-value=3.3e-20  Score=180.85  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYND--------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~--------  154 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.    +.+..+...        
T Consensus        12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   91 (491)
T PRK10982         12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM   91 (491)
T ss_pred             EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence            47899999999999999999999999999999999999999999999977542211111    111111110        


Q ss_pred             --CCe--eecCC---C---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 --VPV--ISEKK---I---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 --~~~--~~~~~---~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                        +.+  .....   .                           ....+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~  171 (491)
T PRK10982         92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN  171 (491)
T ss_pred             HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence              000  00000   0                           0011112223999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+++.|+++++ .+.++++++||...+...
T Consensus       172 ~l~~~l~~l~~-~g~tvii~tH~~~~~~~~  200 (491)
T PRK10982        172 HLFTIIRKLKE-RGCGIVYISHKMEEIFQL  200 (491)
T ss_pred             HHHHHHHHHHh-CCCEEEEEecCHHHHHHh
Confidence            99999999865 478999999998876553

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=9.3e-20  Score=163.61  Aligned_cols=137  Identities=10%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h---HHHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A---AYEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~~~-  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++     |++|+|.+.|.++...  .   ....+.+..+.... 
T Consensus        27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~  106 (260)
T PRK10744         27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF  106 (260)
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence            47899999999999999999999999999999999986     4789999988765310  0   00111111111000 


Q ss_pred             C--------ee---------------------------------e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 P--------VI---------------------------------S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 ~--------~~---------------------------------~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                      +        +.                                 . ........+..+-+||+|++.+|+++|+|||+  
T Consensus       107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~  186 (260)
T PRK10744        107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA  186 (260)
T ss_pred             cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence            0        00                                 0 00001112222234999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                       |..+...+++.|.++.+  +.+++++||+...+.
T Consensus       187 LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~  219 (260)
T PRK10744        187 LDPISTGRIEELITELKQ--DYTVVIVTHNMQQAA  219 (260)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence             99999999999999853  578999999876543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.81  E-value=6.8e-20  Score=164.82  Aligned_cols=139  Identities=17%  Similarity=0.154  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC---------ChhHHHHHHHh--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------RAAAYEQLLIL--------  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~---------~~~~~~ql~~~--------  149 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|...+         .....+.+...        
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~  117 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR  117 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence            5789999999999999999999999999999999999999999988774210         11112222110        


Q ss_pred             ----------cccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881         150 ----------GKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI  214 (302)
Q Consensus       150 ----------~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i  214 (302)
                                ....++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.....+++.|.++.+ .+.++
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~ti  196 (264)
T PRK13546        118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTI  196 (264)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEE
Confidence                      0001111000  00112223344445999999999999999997   88889999999998864 47899


Q ss_pred             ccccceeehhhc
Q psy2881         215 FELPYEIFLIID  226 (302)
Q Consensus       215 ~~~~hd~~lvl~  226 (302)
                      ++++|+...+..
T Consensus       197 IiisH~~~~i~~  208 (264)
T PRK13546        197 FFVSHNLGQVRQ  208 (264)
T ss_pred             EEEcCCHHHHHH
Confidence            999998776544

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.81  E-value=7.8e-20  Score=163.06  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCC--------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVP--------  156 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~--------  156 (302)
                      +++++||++.+|++++|+||||||||||+++|+|+++ .+|+|.++|.++.+....+   .+.+..+.....        
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n   89 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY   89 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence            6899999999999999999999999999999999985 4899999998764322211   111112211100        


Q ss_pred             --eeecCCC-C-C--------------------------HHHHHHHHHHHHHhC-------CCCeEEEcCCC---Cccch
Q psy2881         157 --VISEKKI-T-D--------------------------PAAIAFNAINIAQKK-------NTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       157 --~~~~~~~-~-~--------------------------~~~~~~~~la~al~~-------~~~llllDEP~---d~~~~  196 (302)
                        +...... . .                          ..+..+-+||+|++.       +|+++|+|||+   |+.+.
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~  169 (248)
T PRK03695         90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ  169 (248)
T ss_pred             HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence              0000000 0 0                          011111128999997       67999999997   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ..+++.|+++.+. +.++++++|+...+...
T Consensus       170 ~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~  199 (248)
T PRK03695        170 AALDRLLSELCQQ-GIAVVMSSHDLNHTLRH  199 (248)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEecCHHHHHHh
Confidence            9999999998754 78999999997765443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=4.5e-20  Score=180.57  Aligned_cols=141  Identities=13%  Similarity=0.132  Sum_probs=101.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHH----HHHHhcccCCC----C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYE----QLLILGKYNDV----P  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~~----~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|  ++|+|.+.|.++......+    .+.+..+...+    .
T Consensus        19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   98 (506)
T PRK13549         19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS   98 (506)
T ss_pred             EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence            478999999999999999999999999999999999986  7999999987764322111    11111111100    0


Q ss_pred             ------eeecC---C--C---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         157 ------VISEK---K--I---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       157 ------~~~~~---~--~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                            +....   .  .                           ....+..+-+||+|++.+|+++|+|||+   |+..
T Consensus        99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~  178 (506)
T PRK13549         99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESE  178 (506)
T ss_pred             HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence                  00000   0  0                           0011112223999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ...+++.|.++.+ .+.+++++|||...+...+
T Consensus       179 ~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~  210 (506)
T PRK13549        179 TAVLLDIIRDLKA-HGIACIYISHKLNEVKAIS  210 (506)
T ss_pred             HHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhc
Confidence            9999999999965 4789999999988766533

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.81  E-value=5.4e-20  Score=176.45  Aligned_cols=142  Identities=17%  Similarity=0.203  Sum_probs=107.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC----CCeEEEecccCCChhHHHHHHHhcc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR----KKSVLLAACDTFRAAAYEQLLILGK-----------  151 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~----~g~V~l~~~d~~~~~~~~ql~~~~~-----------  151 (302)
                      .+++|+||++.+||+++|+|.+||||||++..|.|++++.    +|+|.+.|.|.......+.-...+.           
T Consensus        23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~  102 (539)
T COG1123          23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT  102 (539)
T ss_pred             eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence            5789999999999999999999999999999999999976    7999999987643322211111111           


Q ss_pred             ------------------------------------cCCCCeeec--CCCC--CHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         152 ------------------------------------YNDVPVISE--KKIT--DPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       152 ------------------------------------~~~~~~~~~--~~~~--~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                                                          ..+++--..  .++.  .-.+..+-.||+|++.+|++||+||||
T Consensus       103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT  182 (539)
T COG1123         103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT  182 (539)
T ss_pred             hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence                                                111111000  0111  112233344999999999999999998


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                         |...+.++++.|+++.++.|.+++++|||+.++...+
T Consensus       183 TaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~a  222 (539)
T COG1123         183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELA  222 (539)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhc
Confidence               9999999999999999999999999999998877655

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.81  E-value=7e-20  Score=176.27  Aligned_cols=139  Identities=17%  Similarity=0.222  Sum_probs=101.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC---------ChhHHHHHHH---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------RAAAYEQLLI---------  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~---------~~~~~~ql~~---------  148 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.+..         .....+.+..         
T Consensus        38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~  117 (549)
T PRK13545         38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTK  117 (549)
T ss_pred             eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCH
Confidence            4789999999999999999999999999999999999999999999875421         0112222211         


Q ss_pred             ---------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881         149 ---------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI  214 (302)
Q Consensus       149 ---------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i  214 (302)
                               +.+..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.+ .+.++
T Consensus       118 ~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TI  196 (549)
T PRK13545        118 EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTI  196 (549)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEE
Confidence                     01111111100  00112223444456999999999999999997   99999999999998864 47899


Q ss_pred             ccccceeehhhc
Q psy2881         215 FELPYEIFLIID  226 (302)
Q Consensus       215 ~~~~hd~~lvl~  226 (302)
                      ++++||...+..
T Consensus       197 IIVSHdl~~i~~  208 (549)
T PRK13545        197 FFISHSLSQVKS  208 (549)
T ss_pred             EEEECCHHHHHH
Confidence            999999876654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.4e-19  Score=163.19  Aligned_cols=138  Identities=10%  Similarity=0.133  Sum_probs=96.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h--H-HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A--A-YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~~~-  155 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++     |++|+|.+.|.++...  .  . ...+.+..+.... 
T Consensus        35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  114 (268)
T PRK14248         35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF  114 (268)
T ss_pred             eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence            47899999999999999999999999999999999864     6899999988765310  0  0 0001111111000 


Q ss_pred             --C--------------------------------ee--------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --P--------------------------------VI--------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --~--------------------------------~~--------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                        .                                ..        .........+..+-+||+|++.+|+++|+|||+  
T Consensus       115 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~  194 (268)
T PRK14248        115 PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA  194 (268)
T ss_pred             cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcc
Confidence              0                                00        000001112222334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|+++.+  +.++++++||...+..
T Consensus       195 LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~  228 (268)
T PRK14248        195 LDPISNAKIEELITELKE--EYSIIIVTHNMQQALR  228 (268)
T ss_pred             cCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHH
Confidence             99999999999999854  5789999998776544

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.81  E-value=4.4e-20  Score=180.40  Aligned_cols=140  Identities=16%  Similarity=0.179  Sum_probs=100.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCC----CC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYND----VP--  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~----~~--  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.    +.+..+...    ..  
T Consensus        18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   97 (501)
T PRK11288         18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA   97 (501)
T ss_pred             EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence            47899999999999999999999999999999999999999999999877542111111    111111100    00  


Q ss_pred             ----e--eecCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 ----V--ISEKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ----~--~~~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                          +  ......                              ....+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  177 (501)
T PRK11288         98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE  177 (501)
T ss_pred             HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHH
Confidence                0  000000                              0111222223999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+++.|.++.+ .+.+++++|||...+...
T Consensus       178 ~l~~~l~~~~~-~g~tiiiitHd~~~~~~~  206 (501)
T PRK11288        178 QLFRVIRELRA-EGRVILYVSHRMEEIFAL  206 (501)
T ss_pred             HHHHHHHHHHh-CCCEEEEEeCCHHHHHHh
Confidence            99999999865 478999999998776543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.81  E-value=1.1e-19  Score=177.52  Aligned_cols=141  Identities=9%  Similarity=0.124  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHH----HHHHhcccCC-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYE----QLLILGKYND-------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~----ql~~~~~~~~-------  154 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.+.|.++.......    .+.++.+...       
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~  353 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI  353 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence            478999999999999999999999999999999999985 8999999887653211100    0111111100       


Q ss_pred             --------CCeeecC---------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         155 --------VPVISEK---------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       155 --------~~~~~~~---------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                              .+.....                                 ......+..+-+||+|++.+|+++|+|||+  
T Consensus       354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~  433 (500)
T TIGR02633       354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG  433 (500)
T ss_pred             CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence                    0000000                                 000111222223999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |+.+...+++.|.++++. +.+++++|||...+...+
T Consensus       434 LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~  470 (500)
T TIGR02633       434 VDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLS  470 (500)
T ss_pred             cCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhC
Confidence             999999999999998765 889999999988765544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=177.09  Aligned_cols=140  Identities=12%  Similarity=0.150  Sum_probs=100.6

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhcccC----------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKYN----------  153 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~~----------  153 (302)
                      +++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+    ++.++.+..          
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            478999999999999999999999999999999999999999999987653211100    111111110          


Q ss_pred             ------------------------------------CCC-eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         154 ------------------------------------DVP-VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       154 ------------------------------------~~~-~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                                                          ++. -...  .......+..+-.||+|++.+|+++|+|||+   
T Consensus       347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L  426 (501)
T PRK10762        347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV  426 (501)
T ss_pred             HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence                                                000 0000  0000111222233999999999999999998   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+.+...+.+.|+++.+. +.+++++|||...+...+
T Consensus       427 D~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~  462 (501)
T PRK10762        427 DVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMS  462 (501)
T ss_pred             CHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhC
Confidence            999999999999999764 889999999987765543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=176.78  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=101.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC-------CC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN-------DV  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~-------~~  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+.+|++|+|.+.|.++.+......    +.+..+..       +.
T Consensus       262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  341 (491)
T PRK10982        262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL  341 (491)
T ss_pred             cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence            46899999999999999999999999999999999999999999999877643211110    00010000       00


Q ss_pred             C-----------eeec-------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 P-----------VISE-------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 ~-----------~~~~-------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                      .           ....                               .......+..+-+||++++.+|+++|+|||+  
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g  421 (491)
T PRK10982        342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG  421 (491)
T ss_pred             cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence            0           0000                               0000111222334999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |+.+...+++.|.++.+. +.+++++|||...+...+
T Consensus       422 LD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~  458 (491)
T PRK10982        422 IDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGIT  458 (491)
T ss_pred             cChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhC
Confidence             999999999999998764 889999999988765443

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.4e-19  Score=161.57  Aligned_cols=138  Identities=12%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A------------------  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~------------------  141 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++     |++|+|.+.|.++...  .                  
T Consensus        18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   97 (251)
T PRK14251         18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF   97 (251)
T ss_pred             eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence            47899999999999999999999999999999999987     4799999998765310  0                  


Q ss_pred             ---HHHHHHHhcc-------------------cCCCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         142 ---AYEQLLILGK-------------------YNDVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       142 ---~~~ql~~~~~-------------------~~~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                         ..+.+.....                   ..++.     ... ........+..+-+||+|++.+|+++|+|||+  
T Consensus        98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~  177 (251)
T PRK14251         98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA  177 (251)
T ss_pred             CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence               0111110000                   00000     000 00001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+++.|.++.+  +.+++++||+...+.+
T Consensus       178 LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~  211 (251)
T PRK14251        178 LDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGR  211 (251)
T ss_pred             CCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHh
Confidence             99999999999999853  5789999998776544

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.5e-19  Score=176.97  Aligned_cols=141  Identities=9%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHH----HHHhcccC-------C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQ----LLILGKYN-------D  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~-------~  154 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.++........    +.+..+..       +
T Consensus       276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (506)
T PRK13549        276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV  355 (506)
T ss_pred             ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence            47899999999999999999999999999999999998 589999998876532111000    11111110       0


Q ss_pred             CC--------eeecCC---------------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         155 VP--------VISEKK---------------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       155 ~~--------~~~~~~---------------------------------~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                      ..        ......                                 .....+..+-+||+|++.+|+++|+|||+  
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~  435 (506)
T PRK13549        356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG  435 (506)
T ss_pred             CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            00        000000                                 00011122223999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |+.+...+++.|.++++. +.+++++|||+..+...+
T Consensus       436 LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~  472 (506)
T PRK13549        436 IDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLS  472 (506)
T ss_pred             cCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhC
Confidence             999999999999998764 889999999987765443

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.9e-19  Score=160.89  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCChh--H---HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRAA--A---YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~~--~---~~ql~~~~~~~---  153 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++  |   ++|+|.+.|.++.+..  .   ...+.+..+..   
T Consensus        18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   97 (252)
T PRK14256         18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF   97 (252)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence            47899999999999999999999999999999999986  4   5899999987653210  0   00010111110   


Q ss_pred             -----------------------------------CCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         154 -----------------------------------DVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       154 -----------------------------------~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                                                         ++.-     . .........+..+-+||+|++.+|+++|+|||+ 
T Consensus        98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~  177 (252)
T PRK14256         98 PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS  177 (252)
T ss_pred             CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence                                               0000     0 000001112223334999999999999999997 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                        |..+...+++.|.++.+  +.++++++|+...+...
T Consensus       178 gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~  213 (252)
T PRK14256        178 ALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARV  213 (252)
T ss_pred             cCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhh
Confidence              99999999999999864  47899999987765443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.4e-19  Score=176.88  Aligned_cols=141  Identities=7%  Similarity=0.119  Sum_probs=100.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH----HHhcccC-------C-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL----LILGKYN-------D-  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql----~~~~~~~-------~-  154 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+..    .+..+..       . 
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            367999999999999999999999999999999999999999999988764321110000    0111110       0 


Q ss_pred             -----CCe--eec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         155 -----VPV--ISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       155 -----~~~--~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                           +.+  ...                                  .......+..+-.||+|++.+|++||+|||+  
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence                 000  000                                  0000111222223999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |+.+...+++.|.++++. +.+++++|||...+...+
T Consensus       427 LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~  463 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVA  463 (501)
T ss_pred             CCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhC
Confidence             999999999999999764 789999999988766544

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=177.01  Aligned_cols=141  Identities=15%  Similarity=0.180  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH----HHHHhccc---CCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE----QLLILGKY---NDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~----ql~~~~~~---~~~----  155 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.....    .+.++.+.   .++    
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  356 (510)
T PRK09700        277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF  356 (510)
T ss_pred             CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence            4689999999999999999999999999999999999999999999987653211111    11122221   000    


Q ss_pred             Ce-----ee-c-----C-------CC---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         156 PV-----IS-E-----K-------KI---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       156 ~~-----~~-~-----~-------~~---------------------------~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                      .+     +. .     .       ..                           ....+..+-+||+|++.+|+++|+|||
T Consensus       357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP  436 (510)
T PRK09700        357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP  436 (510)
T ss_pred             cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence            00     00 0     0       00                           000111112399999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +   |+.+...+++.|+++++. +.+++++|||...+...+
T Consensus       437 t~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~  476 (510)
T PRK09700        437 TRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVC  476 (510)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhC
Confidence            8   999999999999998754 889999999987655443

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2e-19  Score=160.52  Aligned_cols=138  Identities=12%  Similarity=0.091  Sum_probs=97.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChh-----HHHHHHHhcccCC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAA-----AYEQLLILGKYND--  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~-----~~~ql~~~~~~~~--  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++....     ....+.+..+...  
T Consensus        18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   97 (251)
T PRK14270         18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF   97 (251)
T ss_pred             eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence            478999999999999999999999999999999999875     7899999987753210     0000111111100  


Q ss_pred             -------CCee---------------------------------e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         155 -------VPVI---------------------------------S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       155 -------~~~~---------------------------------~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                             +.+.                                 . ........+..+-+||+|++.+|+++|+|||+  
T Consensus        98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  177 (251)
T PRK14270         98 PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA  177 (251)
T ss_pred             CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                   0000                                 0 00001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|+++.+  +.+++++||+...+..
T Consensus       178 LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~  211 (251)
T PRK14270        178 LDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASR  211 (251)
T ss_pred             CCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHH
Confidence             99999999999999865  4789999998766543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.7e-19  Score=161.83  Aligned_cols=139  Identities=12%  Similarity=0.046  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h---HHHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A---AYEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~---  153 (302)
                      ++++++||++.+|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++...  .   ....+.+..+..   
T Consensus        21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  100 (259)
T PRK14260         21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF  100 (259)
T ss_pred             EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence            478999999999999999999999999999999999885     479999988765310  0   000111111110   


Q ss_pred             ----------------------------------CCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         154 ----------------------------------DVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       154 ----------------------------------~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                        ++.     .. .........+..+-+||+|++.+|+++|+|||+  
T Consensus       101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~  180 (259)
T PRK14260        101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA  180 (259)
T ss_pred             CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence                                              000     00 000001112233334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |+.+...+++.|.++.+  +.+++++||+...+...
T Consensus       181 LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~  215 (259)
T PRK14260        181 LDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRV  215 (259)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHh
Confidence             99999999999999864  47999999987765443

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.80  E-value=1.5e-19  Score=157.95  Aligned_cols=137  Identities=15%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------------------------  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------------------------  141 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.++....                         
T Consensus        15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t   94 (218)
T cd03290          15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT   94 (218)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence            4789999999999999999999999999999999999999999999886542110                         


Q ss_pred             HHHHHHHh-----------cccCCCC-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         142 AYEQLLIL-----------GKYNDVP-VI------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       142 ~~~ql~~~-----------~~~~~~~-~~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                      ..+.+...           .+..++. .+            .........+..+-+||+|++.+|+++|+|||+   |+.
T Consensus        95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~  174 (218)
T cd03290          95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH  174 (218)
T ss_pred             HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHH
Confidence            00111100           0000000 00            000011223333345999999999999999997   888


Q ss_pred             chHHHHH--HHHHHHHHhchhhccccceeehh
Q psy2881         195 TQSHLMR--ELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       195 ~~~~l~~--~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +...+++  .+..+. ..+.++++++|+...+
T Consensus       175 ~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~  205 (218)
T cd03290         175 LSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYL  205 (218)
T ss_pred             HHHHHHHHHHHHHHh-cCCCEEEEEeCChHHH
Confidence            8888887  444443 3478999999987654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=161.47  Aligned_cols=138  Identities=12%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCChh-----HHHHHHHhccc----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRAA-----AYEQLLILGKY----  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~~-----~~~ql~~~~~~----  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+.+     |++|+|.+.|.++....     ....+.+..+.    
T Consensus        19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~   98 (251)
T PRK14244         19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF   98 (251)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence            47899999999999999999999999999999999986     46899999886542110     00001111111    


Q ss_pred             ----------------------------------CCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         153 ----------------------------------NDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       153 ----------------------------------~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                                                        .++.-     . .........+..+-+||+|++.+|+++|+|||+ 
T Consensus        99 ~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~  178 (251)
T PRK14244         99 PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCS  178 (251)
T ss_pred             cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence                                              01100     0 000001112223334999999999999999998 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                        |..+...+.+.|.++.+  +.++++++|+...+..
T Consensus       179 ~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~  213 (251)
T PRK14244        179 ALDPVATNVIENLIQELKK--NFTIIVVTHSMKQAKK  213 (251)
T ss_pred             cCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHh
Confidence              89999999999998853  7899999999876544

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.8e-19  Score=161.58  Aligned_cols=138  Identities=13%  Similarity=0.105  Sum_probs=96.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCC--hh--H-HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFR--AA--A-YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~--~~--~-~~ql~~~~~~~~~-  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++  |   ++|+|.+.|.++..  ..  . ...+.+..+...+ 
T Consensus        26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~  105 (259)
T PRK14274         26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF  105 (259)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence            47899999999999999999999999999999999987  3   58999998876531  00  0 0111111111000 


Q ss_pred             --------Cee----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --------PVI----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --------~~~----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                              .+.                                  .........+..+-+||++++.+|+++|+|||+  
T Consensus       106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~  185 (259)
T PRK14274        106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA  185 (259)
T ss_pred             ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence                    000                                  000001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+++.|.++.+  +.++++++|+...+..
T Consensus       186 LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~  219 (259)
T PRK14274        186 LDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAAR  219 (259)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH
Confidence             99999999999999854  6789999998766543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=161.34  Aligned_cols=138  Identities=13%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChh--H---HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAA--A---YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~--~---~~ql~~~~~~~~~-  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++....  .   ...+.+..+.... 
T Consensus        17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   96 (250)
T PRK14262         17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF   96 (250)
T ss_pred             eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence            478999999999999999999999999999999999874     7899999987653210  0   0001111111000 


Q ss_pred             --C------ee--ec--------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --P------VI--SE--------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --~------~~--~~--------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                        .      +.  ..                                .......+..+-+||+|++.+|+++|+|||+  
T Consensus        97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~  176 (250)
T PRK14262         97 PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA  176 (250)
T ss_pred             cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence              0      00  00                                0000111222234999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |..+...+++.|.++.+  +.++++++|+...+..
T Consensus       177 LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~  210 (250)
T PRK14262        177 LDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIR  210 (250)
T ss_pred             cCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHH
Confidence             99999999999999864  5789999998765443

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.7e-19  Score=160.87  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=96.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h--H-HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A--A-YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~~~-  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|++++     ++|+|.+.|.++...  .  . ...+.+..+.... 
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   96 (250)
T PRK14240         17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF   96 (250)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence            478999999999999999999999999999999998763     689999998765320  0  0 0011111111000 


Q ss_pred             C--------ee----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 P--------VI----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 ~--------~~----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                      +        +.                                  .........+..+-+||+|++.+|+++|+|||+  
T Consensus        97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  176 (250)
T PRK14240         97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA  176 (250)
T ss_pred             cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            0        00                                  000001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+++.|+++.+  +.+++++||+...+..
T Consensus       177 LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~  210 (250)
T PRK14240        177 LDPISTLKIEELIQELKK--DYTIVIVTHNMQQASR  210 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCeEEEEEeCHHHHHh
Confidence             99999999999999853  6789999998776544

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.1e-19  Score=161.48  Aligned_cols=142  Identities=11%  Similarity=0.080  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCC--hh--H-HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFR--AA--A-YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~--~~--~-~~ql~~~~~~~---  153 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|+     +|+|.+.|.++..  ..  . ...+.+..+..   
T Consensus        21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~  100 (261)
T PRK14258         21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF  100 (261)
T ss_pred             eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence            4789999999999999999999999999999999999985     7999998876421  00  0 00000001100   


Q ss_pred             ----------------------------------CCC-e----ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         154 ----------------------------------DVP-V----IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       154 ----------------------------------~~~-~----~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                        ++. .    .. ........+..+-+||++++.+|+++|+|||+  
T Consensus       101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~  180 (261)
T PRK14258        101 PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG  180 (261)
T ss_pred             cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence                                              000 0    00 00001122233334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |..+...+.+.|.++++..+.++++++||...+...+
T Consensus       181 LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~  218 (261)
T PRK14258        181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS  218 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc
Confidence             9999999999999987655789999999877655433

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=162.16  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=97.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--h--H-HHHHHHhccc----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--A--A-YEQLLILGKY----  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~----  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++...  .  . ...+.+..+.    
T Consensus        22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  101 (261)
T PRK14263         22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF  101 (261)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence            478999999999999999999999999999999999986     689999998775310  0  0 0001111111    


Q ss_pred             -------------------------------CCCCe-e-----ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         153 -------------------------------NDVPV-I-----SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       153 -------------------------------~~~~~-~-----~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                                                     .++.- .     .........+..+-+||+|++.+|+++|+|||+   |
T Consensus       102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD  181 (261)
T PRK14263        102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD  181 (261)
T ss_pred             cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence                                           00000 0     000001112223334999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+...+++.|+++.+  +.++++++|+...+.+
T Consensus       182 ~~~~~~l~~~l~~~~~--~~tii~isH~~~~i~~  213 (261)
T PRK14263        182 PIATRRVEELMVELKK--DYTIALVTHNMQQAIR  213 (261)
T ss_pred             HHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHH
Confidence            9999999999999853  5789999998765443

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.80  E-value=1.1e-19  Score=178.83  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=96.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|.... ..   .++.+..|..          
T Consensus       349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eN  427 (529)
T TIGR02868       349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDN  427 (529)
T ss_pred             ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHH
Confidence            478999999999999999999999999999999999999999999999776433 11   0111111110          


Q ss_pred             --------------------CC-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 --------------------DV-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 --------------------~~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                          ++       |      +-.........++.+-+||||+.++|+++|+||||   |..+..
T Consensus       428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~  507 (529)
T TIGR02868       428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES  507 (529)
T ss_pred             HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence                                00       0      00000111223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhcccccee
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      .+++.|.++.  .++|+++++|+.
T Consensus       508 ~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       508 ELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHhc--CCCEEEEEecCC
Confidence            9999988763  367999999963

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=164.35  Aligned_cols=138  Identities=10%  Similarity=0.111  Sum_probs=97.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh---------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA---------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~---------------------  140 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++     |++|+|.+.|.++...                     
T Consensus        53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~  132 (285)
T PRK14254         53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF  132 (285)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence            57899999999999999999999999999999999987     5899999988664210                     


Q ss_pred             --hHHHHHHHh-----------------cccCCCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         141 --AAYEQLLIL-----------------GKYNDVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       141 --~~~~ql~~~-----------------~~~~~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                        ...+.+...                 .+..++.     .. .........+..+-+||+|++.+|+++|+|||+   |
T Consensus       133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD  212 (285)
T PRK14254        133 PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD  212 (285)
T ss_pred             cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCC
Confidence              011111110                 0000110     00 000011122333345999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ..+...+.+.|+++.+  +.++++++||...+..
T Consensus       213 ~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~  244 (285)
T PRK14254        213 PVATSKIEDLIEELAE--EYTVVIVTHNMQQAAR  244 (285)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHh
Confidence            9999999999999875  3689999998776543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.80  E-value=1.8e-19  Score=161.19  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=95.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-----------EecccCCChhHHHHHH---------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-----------LAACDTFRAAAYEQLL---------  147 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-----------l~~~d~~~~~~~~ql~---------  147 (302)
                      +++++++ +.+|++++|+||||||||||+++|+|+++|++|+|.           +.|.+...... +..+         
T Consensus        16 ~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~~   93 (255)
T cd03236          16 KLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT-KLLEGDVKVIVKP   93 (255)
T ss_pred             hhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH-Hhhhcccceeeec
Confidence            6788884 899999999999999999999999999999999996           55655432110 0000         


Q ss_pred             ----------------------------HhcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         148 ----------------------------ILGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       148 ----------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                                                  .+.+..++.-...  .......+..+-.+|++++.+|+++|+|||+   |+.
T Consensus        94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~  173 (255)
T cd03236          94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK  173 (255)
T ss_pred             chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence                                        0000011100000  0001112222334999999999999999998   888


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +...+.+.|+++.+. +.++++++||...+...+
T Consensus       174 ~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~a  206 (255)
T cd03236         174 QRLNAARLIRELAED-DNYVLVVEHDLAVLDYLS  206 (255)
T ss_pred             HHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhC
Confidence            888999999998764 789999999987765433

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.80  E-value=1.9e-19  Score=161.39  Aligned_cols=137  Identities=12%  Similarity=0.086  Sum_probs=97.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~--------  155 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|.+|+|.+.|.++.....   ...+.+..+...+        
T Consensus        35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n  114 (257)
T cd03288          35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN  114 (257)
T ss_pred             cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence            47899999999999999999999999999999999999999999998876532111   0111111111000        


Q ss_pred             -Cee---------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         156 -PVI---------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       156 -~~~---------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                       ...                                 .........+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus       115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~  194 (257)
T cd03288         115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI  194 (257)
T ss_pred             cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence             000                                 000011122333345999999999999999997   8888888


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +++.+.++.  .+.++++++|+...+.
T Consensus       195 l~~~l~~~~--~~~tiii~sh~~~~~~  219 (257)
T cd03288         195 LQKVVMTAF--ADRTVVTIAHRVSTIL  219 (257)
T ss_pred             HHHHHHHhc--CCCEEEEEecChHHHH
Confidence            988888864  2689999999877654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=163.72  Aligned_cols=140  Identities=14%  Similarity=0.113  Sum_probs=98.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--hH---HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--AA---YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~~-  155 (302)
                      ++++++||++.+|++++|+|+||||||||+++|+|+++     |++|+|.+.|.++...  ..   ...+.+..+...+ 
T Consensus        38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~  117 (271)
T PRK14238         38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF  117 (271)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence            47899999999999999999999999999999999987     6899999998765310  00   0011111111000 


Q ss_pred             --------Ce----ee------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --------PV----IS------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --------~~----~~------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                              .+    ..                              ........+..+-+||+|++.+|+++|+|||+  
T Consensus       118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~  197 (271)
T PRK14238        118 PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA  197 (271)
T ss_pred             cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence                    00    00                              00001112222234999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |+.+...+++.|.++.+  +.++++++||...+...+
T Consensus       198 LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~  233 (271)
T PRK14238        198 LDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARIS  233 (271)
T ss_pred             CCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhC
Confidence             99999999999999864  578999999877655433

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.80  E-value=1.9e-19  Score=178.91  Aligned_cols=136  Identities=16%  Similarity=0.223  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~---------  154 (302)
                      ++++++|+++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|......   ..++.+..|...         
T Consensus       357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N  436 (582)
T PRK11176        357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN  436 (582)
T ss_pred             ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence            47899999999999999999999999999999999999999999999987643211   111111111100         


Q ss_pred             C-----------------------------------CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         155 V-----------------------------------PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       155 ~-----------------------------------~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                      +                                   .+-.........+..+-+||||+.++|+++|+||||   |+.+.
T Consensus       437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~  516 (582)
T PRK11176        437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE  516 (582)
T ss_pred             HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence            0                                   000000111223344445999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ..+++.|.++.+  ++|+++++|+...+
T Consensus       517 ~~i~~~l~~~~~--~~tvI~VtHr~~~~  542 (582)
T PRK11176        517 RAIQAALDELQK--NRTSLVIAHRLSTI  542 (582)
T ss_pred             HHHHHHHHHHhC--CCEEEEEecchHHH
Confidence            999999988743  67999999976543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=180.88  Aligned_cols=142  Identities=15%  Similarity=0.147  Sum_probs=101.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC----------CChhH--------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT----------FRAAA--------------  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~----------~~~~~--------------  142 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+.          .....              
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v  109 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI  109 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence            578999999999999999999999999999999999999999998876421          00000              


Q ss_pred             --------------HHHHHH-------------------hcccCCCCe----e-ecCCCCCHHHHHHHHHHHHHhCCCCe
Q psy2881         143 --------------YEQLLI-------------------LGKYNDVPV----I-SEKKITDPAAIAFNAINIAQKKNTDI  184 (302)
Q Consensus       143 --------------~~ql~~-------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~la~al~~~~~l  184 (302)
                                    .+++..                   +.+..+++-    . .........+..+-+||+|++.+|++
T Consensus       110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l  189 (623)
T PRK10261        110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV  189 (623)
T ss_pred             EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence                          011100                   000011100    0 00000111222333499999999999


Q ss_pred             EEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         185 VIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       185 lllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ||+|||+   |+..+..+++.|+++.+..+.+++++|||+..+...+
T Consensus       190 LllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a  236 (623)
T PRK10261        190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA  236 (623)
T ss_pred             EEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence            9999998   9999999999999998766889999999988776543

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.3e-19  Score=161.78  Aligned_cols=139  Identities=14%  Similarity=0.114  Sum_probs=97.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--hH---HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--AA---YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~---  153 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++     |++|+|.++|.++...  ..   ...+.+..+..   
T Consensus        34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~  113 (267)
T PRK14237         34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF  113 (267)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence            57899999999999999999999999999999999986     4799999988765310  00   00011111110   


Q ss_pred             ----------------------------------CCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         154 ----------------------------------DVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       154 ----------------------------------~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                        ++.     ... ........+..+-+||+|++.+|+++|+|||+  
T Consensus       114 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~  193 (267)
T PRK14237        114 AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA  193 (267)
T ss_pred             cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                                              000     000 00001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |+.+...+.+.|.++.+  +.++++++|+...+.+.
T Consensus       194 LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~  228 (267)
T PRK14237        194 LDPISTMQLEETMFELKK--NYTIIIVTHNMQQAARA  228 (267)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHh
Confidence             99999999999998853  57899999987765543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.80  E-value=2.2e-19  Score=175.90  Aligned_cols=140  Identities=12%  Similarity=0.140  Sum_probs=100.7

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccC----------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYN----------  153 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~----------  153 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.++........    +.++.+..          
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t  357 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP  357 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence            5789999999999999999999999999999999999999999998876533211110    11111110          


Q ss_pred             ---------------------------------CCC--eeec-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         154 ---------------------------------DVP--VISE-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       154 ---------------------------------~~~--~~~~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                                                       ++.  .... .......+..+-+||+|++.+|++||+|||+   |+.
T Consensus       358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~  437 (510)
T PRK15439        358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS  437 (510)
T ss_pred             HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence                                             000  0000 0000011122223999999999999999998   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +...+++.|+++++. +.+++++|||..++...+
T Consensus       438 ~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~  470 (510)
T PRK15439        438 ARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMA  470 (510)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhC
Confidence            999999999999764 789999999988766544

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.4e-19  Score=160.02  Aligned_cols=140  Identities=11%  Similarity=0.093  Sum_probs=98.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCChh----H-HHHHHHhcccC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRAA----A-YEQLLILGKYN---  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~~----~-~~ql~~~~~~~---  153 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|+     +|+|.+.|.++....    . ...+.+..+..   
T Consensus        18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   97 (251)
T PRK14249         18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF   97 (251)
T ss_pred             eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence            4789999999999999999999999999999999999987     599999887653210    0 00000011110   


Q ss_pred             ----------------------------------CCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         154 ----------------------------------DVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       154 ----------------------------------~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                        ++.     .. .........+..+-+|++|++.+|+++|+|||+  
T Consensus        98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~  177 (251)
T PRK14249         98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA  177 (251)
T ss_pred             cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence                                              000     00 000001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                       |+.+...+.+.|.++.  .+.++++++|+...+.+.+
T Consensus       178 LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~~~~~  213 (251)
T PRK14249        178 LDPVSTMRIEELMQELK--QNYTIAIVTHNMQQAARAS  213 (251)
T ss_pred             CCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhC
Confidence             9999999999999884  3689999999887765543

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.7e-19  Score=160.99  Aligned_cols=139  Identities=9%  Similarity=0.066  Sum_probs=96.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--hH---HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--AA---YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~~-  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|++.     |++|+|.+.|.++...  ..   ...+.+..+...+ 
T Consensus        24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  103 (264)
T PRK14243         24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF  103 (264)
T ss_pred             EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence            57899999999999999999999999999999999986     3789999988765210  00   0011111111000 


Q ss_pred             ----------Ceeec------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         156 ----------PVISE------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       156 ----------~~~~~------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                                +....                              .......+..+-+||+|++.+|+++|+|||+   |
T Consensus       104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD  183 (264)
T PRK14243        104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD  183 (264)
T ss_pred             cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence                      00000                              0000111222234999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +.+...+++.|.++.+  +.++++++|+...+...
T Consensus       184 ~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~  216 (264)
T PRK14243        184 PISTLRIEELMHELKE--QYTIIIVTHNMQQAARV  216 (264)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHh
Confidence            9999999999999865  46899999987665433

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.7e-19  Score=160.87  Aligned_cols=138  Identities=12%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCC-h--hH-HHHHHHhcccCCC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFR-A--AA-YEQLLILGKYNDV--  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~-~--~~-~~ql~~~~~~~~~--  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++.. .  .. ...+.+..+...+  
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   96 (249)
T PRK14253         17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP   96 (249)
T ss_pred             eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence            478999999999999999999999999999999999986     48999998876521 0  00 1111111111000  


Q ss_pred             -------Ceeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         156 -------PVISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       156 -------~~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                             .+...                                  .......+..+-+||+|++.+|+++|+|||+   
T Consensus        97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L  176 (249)
T PRK14253         97 MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL  176 (249)
T ss_pred             ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence                   00000                                  0001112222234999999999999999997   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |..+...+++.|.++.+  +.++++++|+...+..
T Consensus       177 D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~  209 (249)
T PRK14253        177 DPIATHKIEELMEELKK--NYTIVIVTHSMQQARR  209 (249)
T ss_pred             CHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHH
Confidence            99999999999999865  4789999998776544

>KOG0058|consensus

Probab=99.80  E-value=1.6e-19  Score=176.17  Aligned_cols=138  Identities=15%  Similarity=0.198  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++|+||+++||+++|+|||||+||||+++.|-.+|.|++|+|.++|.|+......   .++...+|..-         
T Consensus       482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN  561 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN  561 (716)
T ss_pred             hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence            378999999999999999999999999999999999999999999999997543321   11122222100         


Q ss_pred             CCe----------------------------------eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 VPV----------------------------------ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~~----------------------------------~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.+                                  -.......-.++.+-+||||++++|.++||||+|   |..+..
T Consensus       562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~  641 (716)
T KOG0058|consen  562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY  641 (716)
T ss_pred             HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence            000                                  0000001112233345999999999999999998   888888


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.|.++.+  +.|++++.|....|-.
T Consensus       642 lVq~aL~~~~~--~rTVlvIAHRLSTV~~  668 (716)
T KOG0058|consen  642 LVQEALDRLMQ--GRTVLVIAHRLSTVRH  668 (716)
T ss_pred             HHHHHHHHhhc--CCeEEEEehhhhHhhh
Confidence            88888887765  4788888886544433

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.80  E-value=2.4e-19  Score=178.46  Aligned_cols=134  Identities=16%  Similarity=0.186  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++||++++|+.++|+|||||||||+++.|+|++ |++|+|.++|.|.......   +++.+..|...         
T Consensus       364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN  442 (588)
T PRK11174        364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN  442 (588)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence            5789999999999999999999999999999999999 9999999999876432211   11111111100         


Q ss_pred             C--------------------------------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 V--------------------------------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~--------------------------------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +                                .  +-.......-.++.+-+||||++++|+++|+|||+   |..+..
T Consensus       443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~  522 (588)
T PRK11174        443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ  522 (588)
T ss_pred             hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence            0                                0  00001112223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+++.|.++.  .++|+++++|+...
T Consensus       523 ~i~~~l~~~~--~~~TvIiItHrl~~  546 (588)
T PRK11174        523 LVMQALNAAS--RRQTTLMVTHQLED  546 (588)
T ss_pred             HHHHHHHHHh--CCCEEEEEecChHH
Confidence            9999888875  36799999997644

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.80  E-value=3.5e-19  Score=156.33  Aligned_cols=130  Identities=13%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCC------C-----------
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV------P-----------  156 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~------~-----------  156 (302)
                      |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  ...+.+..+....      .           
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            46789999999999999999999999999999999999998764210  0000011111000      0           


Q ss_pred             ---eeecCC-------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         157 ---VISEKK-------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       157 ---~~~~~~-------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                         ......                         .....+..+-+|++|++.+|+++|+|||+   |+.+...+++.|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~  158 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE  158 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence               000000                         00111112223999999999999999997   99999999999999


Q ss_pred             HHHHhchhhccccceeehhhc
Q psy2881         206 IKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+. +.++++++||...+..
T Consensus       159 ~~~~-~~tvii~sH~~~~~~~  178 (223)
T TIGR03771       159 LAGA-GTAILMTTHDLAQAMA  178 (223)
T ss_pred             HHHc-CCEEEEEeCCHHHHHH
Confidence            8754 7899999998776544

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.2e-19  Score=162.12  Aligned_cols=139  Identities=14%  Similarity=0.136  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCC--hh--H-HHHHHHhcccCC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFR--AA--A-YEQLLILGKYND--  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~--~~--~-~~ql~~~~~~~~--  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|+     +|+|.+.|.++..  ..  . ...+.+..+...  
T Consensus        18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   97 (252)
T PRK14272         18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF   97 (252)
T ss_pred             EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence            5789999999999999999999999999999999998864     7999998866531  00  0 000101111000  


Q ss_pred             ----------------------------------CCee-------e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         155 ----------------------------------VPVI-------S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       155 ----------------------------------~~~~-------~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                                                        ....       . ........+..+-+||+|++.+|+++|+|||+ 
T Consensus        98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  177 (252)
T PRK14272         98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS  177 (252)
T ss_pred             cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence                                              0000       0 00001112223334999999999999999997 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                        |..+...+++.|+++++  +.++++++|+...+.+.
T Consensus       178 ~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~  213 (252)
T PRK14272        178 ALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQAARV  213 (252)
T ss_pred             cCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHh
Confidence              99999999999999863  58899999987765543

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.8e-19  Score=159.55  Aligned_cols=139  Identities=9%  Similarity=0.088  Sum_probs=96.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH---hhh--CCCeEEEecccCCChh-----HHHHHHHhccc----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY---FKK--RKKSVLLAACDTFRAA-----AYEQLLILGKY----  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~---~~~--~~g~V~l~~~d~~~~~-----~~~ql~~~~~~----  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+   ++|  ++|+|.+.|.++.+..     ....+.+..+.    
T Consensus        17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   96 (250)
T PRK14245         17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF   96 (250)
T ss_pred             eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence            478999999999999999999999999999999997   344  4899999987653210     00001111111    


Q ss_pred             ---------------------------------CCCCe-e----e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         153 ---------------------------------NDVPV-I----S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       153 ---------------------------------~~~~~-~----~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                                                       .++.- .    . ........+..+-+||+|++.+|+++|+|||+  
T Consensus        97 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~  176 (250)
T PRK14245         97 PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA  176 (250)
T ss_pred             cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence                                             00000 0    0 00001112233334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |+.+...+++.|+++.+  +.++++++||...+...
T Consensus       177 LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~  211 (250)
T PRK14245        177 LDPISTAKVEELIHELKK--DYTIVIVTHNMQQAARV  211 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhh
Confidence             99999999999999853  67899999988765543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.79  E-value=3.2e-19  Score=147.57  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=107.0

Q ss_pred             HHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC---------ChhHHHHHHHh
Q psy2881          81 LVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------RAAAYEQLLIL  149 (302)
Q Consensus        81 l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~---------~~~~~~ql~~~  149 (302)
                      +-+.+.  .+++++|++.++|+++.|||.+||||||+++||.-+..|+.|+|.++|..+.         ..+...|+...
T Consensus        12 lHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~   91 (256)
T COG4598          12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL   91 (256)
T ss_pred             HHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence            334443  4789999999999999999999999999999999999999999999987642         11223333332


Q ss_pred             cccC-------CC-------------CeeecC-------------------------CC--CCHHHHHHHHHHHHHhCCC
Q psy2881         150 GKYN-------DV-------------PVISEK-------------------------KI--TDPAAIAFNAINIAQKKNT  182 (302)
Q Consensus       150 ~~~~-------~~-------------~~~~~~-------------------------~~--~~~~~~~~~~la~al~~~~  182 (302)
                      ..++       ++             |+....                         ++  ..-.+..+.+||||++.+|
T Consensus        92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP  171 (256)
T COG4598          92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP  171 (256)
T ss_pred             HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence            2221       11             110000                         00  0011222334999999999


Q ss_pred             CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         183 DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       183 ~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++|+||||   ||...-+++..+++++++ |+|.+++||++.++-+-+
T Consensus       172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vs  219 (256)
T COG4598         172 EVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVS  219 (256)
T ss_pred             ceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhh
Confidence            999999998   999999999999999876 899999999988865543

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.9e-19  Score=159.52  Aligned_cols=138  Identities=8%  Similarity=0.091  Sum_probs=95.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCChh----H-HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRAA----A-YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~~----~-~~ql~~~~~~~~~-  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+.+  |   ++|+|.+.|.++....    . ...+.+..+...+ 
T Consensus        19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   98 (252)
T PRK14239         19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF   98 (252)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence            47899999999999999999999999999999999853  6   4899999987652100    0 0011111111000 


Q ss_pred             --Ce----------ee------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --PV----------IS------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --~~----------~~------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                        ..          ..                              ........+..+-+||+|++.+|+++|+|||+  
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  178 (252)
T PRK14239         99 PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA  178 (252)
T ss_pred             cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence              00          00                              00001111222334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |..+...+++.|+++.+  +.++++++|+...+..
T Consensus       179 LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~  212 (252)
T PRK14239        179 LDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASR  212 (252)
T ss_pred             cCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHH
Confidence             99999999999999854  5789999998766544

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.79  E-value=2.1e-19  Score=176.47  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe-ccc---CCCh----------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA-ACD---TFRA----------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~-~~d---~~~~----------------------  140 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+. +.+   ....                      
T Consensus       298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~  377 (520)
T TIGR03269       298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY  377 (520)
T ss_pred             eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence            47889999999999999999999999999999999999999999995 432   1100                      


Q ss_pred             ---hHHHHHHH-----------------hcccCCCCe------ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         141 ---AAYEQLLI-----------------LGKYNDVPV------IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       141 ---~~~~ql~~-----------------~~~~~~~~~------~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                         ...+.+..                 +.+.+++.-      .. ........+..+-+||+|++.+|+++|+|||+  
T Consensus       378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~  457 (520)
T TIGR03269       378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT  457 (520)
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence               01111110                 001111110      00 00011122333445999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |+.+...+++.|+++++..+.+++++|||...+...
T Consensus       458 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~  494 (520)
T TIGR03269       458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV  494 (520)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence             999999999999999876688999999998775543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2e-19  Score=163.67  Aligned_cols=138  Identities=9%  Similarity=0.086  Sum_probs=96.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h---HHHHHHHhcccCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A---AYEQLLILGKYNDVP  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~---~~~ql~~~~~~~~~~  156 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+.+     |++|+|.++|.++...  .   ....+.+..+...+.
T Consensus        53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  132 (286)
T PRK14275         53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF  132 (286)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence            47899999999999999999999999999999999864     4899999988764311  0   011111111111000


Q ss_pred             ---------ee----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         157 ---------VI----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       157 ---------~~----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                               +.                                  .........+..+-+||+|++.+|+++|+|||+  
T Consensus       133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~g  212 (286)
T PRK14275        133 PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA  212 (286)
T ss_pred             ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence                     00                                  000001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |..+...+++.|+++.+  +.++++++||...+.+
T Consensus       213 LD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~  246 (286)
T PRK14275        213 LDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASR  246 (286)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHH
Confidence             99999999999998864  4789999998776544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.79  E-value=2.5e-19  Score=181.39  Aligned_cols=133  Identities=15%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~-----------  152 (302)
                      ++++|+||++++|+.++|+|||||||||+++.|+|++.|++|+|.++|.|+.....   ++++.+..|.           
T Consensus       467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  546 (686)
T TIGR03797       467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN  546 (686)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence            57899999999999999999999999999999999999999999999988643221   1111111111           


Q ss_pred             ------------------CCCC-------------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         153 ------------------NDVP-------------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       153 ------------------~~~~-------------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                        .++.             .-.........+..+-+||||+.++|+++|+||||   |+.+...
T Consensus       547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~  626 (686)
T TIGR03797       547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI  626 (686)
T ss_pred             HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence                              1100             00001112234444455999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeeh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +++.|+++    ++|+++++|+...
T Consensus       627 i~~~L~~~----~~T~IiItHr~~~  647 (686)
T TIGR03797       627 VSESLERL----KVTRIVIAHRLST  647 (686)
T ss_pred             HHHHHHHh----CCeEEEEecChHH
Confidence            98888775    4689999997544

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.1e-19  Score=170.88  Aligned_cols=139  Identities=13%  Similarity=0.134  Sum_probs=105.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~~~~--------  155 (302)
                      ++++++||++++|+.++|+|+|||||||++..|+|+++|++|+|.++|.+.....   -++|+.+.++...+        
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN  414 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN  414 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence            5789999999999999999999999999999999999999999999998764322   22333333332110        


Q ss_pred             --------------------------------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         156 --------------------------------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       156 --------------------------------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                                      .  .-....+....+..+-++|||+..+++++|+||||   |.++.+.
T Consensus       415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~  494 (559)
T COG4988         415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI  494 (559)
T ss_pred             hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence                                            0  00011112233444556999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++.|.++.+.  +|++++||+...+.++
T Consensus       495 i~~~l~~l~~~--ktvl~itHrl~~~~~~  521 (559)
T COG4988         495 ILQALQELAKQ--KTVLVITHRLEDAADA  521 (559)
T ss_pred             HHHHHHHHHhC--CeEEEEEcChHHHhcC
Confidence            99999999864  7999999987665544

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.2e-19  Score=161.24  Aligned_cols=139  Identities=11%  Similarity=0.060  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh---------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA---------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~---------------------  140 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++.+.                     
T Consensus        39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  118 (272)
T PRK14236         39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF  118 (272)
T ss_pred             eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence            578999999999999999999999999999999999873     799999988765321                     


Q ss_pred             --hHHHHHHHhcc-------------------cCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         141 --AAYEQLLILGK-------------------YNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       141 --~~~~ql~~~~~-------------------~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                        ...+.+.....                   ..++.-     . .........+..+-+||+|++.+|+++|+|||+  
T Consensus       119 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~g  198 (272)
T PRK14236        119 PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA  198 (272)
T ss_pred             cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence              00111110000                   000000     0 000001112233334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |+.+...+++.|.++.+  +.+++++||+...+...
T Consensus       199 LD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~  233 (272)
T PRK14236        199 LDPISTLKIEELITELKS--KYTIVIVTHNMQQAARV  233 (272)
T ss_pred             CCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhh
Confidence             99999999999999864  57899999988765543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.79  E-value=8.1e-20  Score=179.68  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=100.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH------HHHHHhcccCC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY------EQLLILGKYND------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~------~ql~~~~~~~~------  154 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++ ++|+|.+.|.++......      ..+.+..+...      
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~  378 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR  378 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence            47899999999999999999999999999999999985 899999998765322110      01111111110      


Q ss_pred             CCe--------eec---CC---------------------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         155 VPV--------ISE---KK---------------------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       155 ~~~--------~~~---~~---------------------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                      ..+        ...   ..                           .....+..+-+||+|++.+|+++|+|||+   |+
T Consensus       379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~  458 (529)
T PRK15134        379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK  458 (529)
T ss_pred             ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence            000        000   00                           00011112223999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+...+++.|+++++..+.+++++|||+..+...
T Consensus       459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~  492 (529)
T PRK15134        459 TVQAQILALLKSLQQKHQLAYLFISHDLHVVRAL  492 (529)
T ss_pred             HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHh
Confidence            9999999999999876678999999998876543

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.79  E-value=3e-19  Score=161.41  Aligned_cols=137  Identities=10%  Similarity=0.118  Sum_probs=98.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---------------------HH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---------------------EQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---------------------~q  145 (302)
                      ++++++||++++|++++|+||||||||||+++|+|++. .+|+|.++|.++......                     +.
T Consensus        18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n   96 (275)
T cd03289          18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN   96 (275)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence            47899999999999999999999999999999999997 789999999775422110                     11


Q ss_pred             HHHh-----------cccCCCCeeec-------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         146 LLIL-----------GKYNDVPVISE-------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       146 l~~~-----------~~~~~~~~~~~-------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +..+           .+..++.-+..             .......+..+-.||||++.+|+++|+|||+   |+.+...
T Consensus        97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~  176 (275)
T cd03289          97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV  176 (275)
T ss_pred             hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence            1100           00111100000             0011223333445999999999999999998   8998999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|.++.  .++++++++|+...+..
T Consensus       177 l~~~l~~~~--~~~tii~isH~~~~i~~  202 (275)
T cd03289         177 IRKTLKQAF--ADCTVILSEHRIEAMLE  202 (275)
T ss_pred             HHHHHHHhc--CCCEEEEEECCHHHHHh
Confidence            999998764  37899999998876654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.4e-19  Score=161.34  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhH----HHHHHHhccc-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAA----YEQLLILGKY-----  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~----~~ql~~~~~~-----  152 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.++.....    ...+.+..+.     
T Consensus        35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~  114 (276)
T PRK14271         35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP  114 (276)
T ss_pred             EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence            578999999999999999999999999999999999985     68999998866432100    0011111111     


Q ss_pred             --------------------------------CCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         153 --------------------------------NDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       153 --------------------------------~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                                                      .++.-     . .........+..+-+||+|++.+|+++|+|||+   
T Consensus       115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~L  194 (276)
T PRK14271        115 MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL  194 (276)
T ss_pred             ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                                            00000     0 000001122233344999999999999999997   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      |..+...+++.|.++.+  +.++++++|+...+...
T Consensus       195 D~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~  228 (276)
T PRK14271        195 DPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARI  228 (276)
T ss_pred             CHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHh
Confidence            89999999999999865  47899999988765543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.1e-19  Score=162.32  Aligned_cols=138  Identities=11%  Similarity=0.070  Sum_probs=95.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCCh--h--H-HHHHHHhcccCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRA--A--A-YEQLLILGKYNDVP  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~--~--~-~~ql~~~~~~~~~~  156 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+..  |   ++|+|.+.|.++...  .  . ...+.+..+...+-
T Consensus        20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   99 (253)
T PRK14261         20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF   99 (253)
T ss_pred             eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence            47899999999999999999999999999999999875  3   479999998775421  0  0 00011111110000


Q ss_pred             ---------eeecC----------------------------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         157 ---------VISEK----------------------------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       157 ---------~~~~~----------------------------------~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                               +....                                  ......+..+-+||+|++.+|+++|+|||+  
T Consensus       100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g  179 (253)
T PRK14261        100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA  179 (253)
T ss_pred             cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                     00000                                  000111122223899999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|.++.+  +.++++++|+...+..
T Consensus       180 LD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~  213 (253)
T PRK14261        180 LDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAAR  213 (253)
T ss_pred             CCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHh
Confidence             99999999999999865  4789999998776544

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4.8e-19  Score=158.76  Aligned_cols=138  Identities=14%  Similarity=0.155  Sum_probs=94.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec------ccCCChh-------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA------CDTFRAA-------------------  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~------~d~~~~~-------------------  141 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|+++|++|+|.+.|      .+..+..                   
T Consensus        24 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~  103 (257)
T PRK14246         24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFP  103 (257)
T ss_pred             eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCC
Confidence            478999999999999999999999999999999999999886665544      4432111                   


Q ss_pred             ---HHHHHHHh-------------------cccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         142 ---AYEQLLIL-------------------GKYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       142 ---~~~ql~~~-------------------~~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                         ..+.+...                   .+.+++.-     . .........+..+-+|++|++.+|+++|+|||+  
T Consensus       104 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~  183 (257)
T PRK14246        104 HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM  183 (257)
T ss_pred             CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence               01111100                   00011100     0 000001122333345999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |..+...+.+.|.++.+  +.++++++|+...+..
T Consensus       184 LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~  217 (257)
T PRK14246        184 IDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVAR  217 (257)
T ss_pred             CCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHH
Confidence             88999999999998854  5799999998776543

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4e-19  Score=160.78  Aligned_cols=138  Identities=11%  Similarity=0.079  Sum_probs=96.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCCh--hH---HHHHHHhcccCC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRA--AA---YEQLLILGKYND--  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~--~~---~~ql~~~~~~~~--  154 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|++++     .+|+|.+.|.++...  ..   ...+.++.+...  
T Consensus        34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~  113 (274)
T PRK14265         34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF  113 (274)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence            478999999999999999999999999999999999863     589999998765321  00   000111111100  


Q ss_pred             ---------------------------------CC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         155 ---------------------------------VP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       155 ---------------------------------~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                                                       +.     ... ........+..+-+||+|++.+|+++|+|||+   |
T Consensus       114 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD  193 (274)
T PRK14265        114 PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD  193 (274)
T ss_pred             cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence                                             00     000 00001112223334999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ..+...+.+.|.++.+  +.++++++||...+..
T Consensus       194 ~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~  225 (274)
T PRK14265        194 PISTRQVEELCLELKE--QYTIIMVTHNMQQASR  225 (274)
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence            9999999999999864  5789999998776543

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=3.3e-19  Score=177.63  Aligned_cols=136  Identities=13%  Similarity=0.157  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      ++++++||++++|+.++|+|+||||||||++.|+|+++|++|+|.++|.|.....                     ..+.
T Consensus       355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N  434 (592)
T PRK10790        355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN  434 (592)
T ss_pred             ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence            4789999999999999999999999999999999999999999999998753211                     1111


Q ss_pred             HHH-----------hcccCCC-------------CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         146 LLI-----------LGKYNDV-------------PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       146 l~~-----------~~~~~~~-------------~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +..           ..+..++             .+-.........+..+-+||||+.++|+++|+|||+   |+.+...
T Consensus       435 I~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~  514 (592)
T PRK10790        435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA  514 (592)
T ss_pred             HHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence            111           1111110             000111112234455556999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +.+.|.++.+  ++|+++++|+...+
T Consensus       515 i~~~l~~~~~--~~tvIivtHr~~~l  538 (592)
T PRK10790        515 IQQALAAVRE--HTTLVVIAHRLSTI  538 (592)
T ss_pred             HHHHHHHHhC--CCEEEEEecchHHH
Confidence            9999988753  57899999976543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.79  E-value=3.3e-19  Score=175.36  Aligned_cols=136  Identities=14%  Similarity=0.177  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|.......   .++.+..|..          
T Consensus       336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N  415 (529)
T TIGR02857       336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN  415 (529)
T ss_pred             ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence            478999999999999999999999999999999999999999999999876432211   1111111110          


Q ss_pred             --------------------CCC-------------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 --------------------DVP-------------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 --------------------~~~-------------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                          ++.             +-.........+..+-+||||++++|+++|+|||+   |+.+..
T Consensus       416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~  495 (529)
T TIGR02857       416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA  495 (529)
T ss_pred             HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence                                000             00000111223334445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.+.++.  .++|+++++|+...+
T Consensus       496 ~i~~~l~~~~--~~~t~i~itH~~~~~  520 (529)
T TIGR02857       496 LVTEALRALA--QGRTVLLVTHRLALA  520 (529)
T ss_pred             HHHHHHHHhc--CCCEEEEEecCHHHH
Confidence            9999998874  368999999987554

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.79  E-value=1.9e-19  Score=176.65  Aligned_cols=141  Identities=13%  Similarity=0.047  Sum_probs=97.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEec-----------------------ccC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAA-----------------------CDT----  137 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~-----------------------~d~----  137 (302)
                      ++++++||++.+|++++|+||||||||||++.|+|++  +|++|+|.+.+                       .++    
T Consensus        14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~   93 (520)
T TIGR03269        14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE   93 (520)
T ss_pred             EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccc
Confidence            5789999999999999999999999999999999997  69999999862                       111    


Q ss_pred             ---CChhH--HHH----HHHhccc-CC-CC---e-----e-ecCCCCC-----------------------------HHH
Q psy2881         138 ---FRAAA--YEQ----LLILGKY-ND-VP---V-----I-SEKKITD-----------------------------PAA  168 (302)
Q Consensus       138 ---~~~~~--~~q----l~~~~~~-~~-~~---~-----~-~~~~~~~-----------------------------~~~  168 (302)
                         .....  ...    +.+..+. .. .+   .     + .......                             ..+
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq  173 (520)
T TIGR03269        94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGE  173 (520)
T ss_pred             hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHH
Confidence               00000  000    1111111 00 00   0     0 0000000                             011


Q ss_pred             HHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         169 IAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       169 ~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ..+-+||+|++.+|+++|+|||+   |+.+...+++.|+++.+..+.++++++||...+...
T Consensus       174 ~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~  235 (520)
T TIGR03269       174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL  235 (520)
T ss_pred             HHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence            11122999999999999999998   999999999999999776688999999998877653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.79  E-value=3.7e-19  Score=173.85  Aligned_cols=140  Identities=11%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHHH----HHHhccc--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYEQ----LLILGKY--------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~q----l~~~~~~--------  152 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|  ++|+|.+.|.++......+.    +.++.+.        
T Consensus        15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   94 (500)
T TIGR02633        15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS   94 (500)
T ss_pred             EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence            478999999999999999999999999999999999986  79999998876532111000    0011111        


Q ss_pred             ---------------------------------CCCCeee--c-CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         153 ---------------------------------NDVPVIS--E-KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       153 ---------------------------------~~~~~~~--~-~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                                                       .++.-..  . .......+..+-+||+|++.+|+++|+|||+   |+
T Consensus        95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~  174 (500)
T TIGR02633        95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE  174 (500)
T ss_pred             HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence                                             0000000  0 0001112222334999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+...+++.|+++.+ .+.+++++|||...+...
T Consensus       175 ~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~  207 (500)
T TIGR02633       175 KETEILLDIIRDLKA-HGVACVYISHKLNEVKAV  207 (500)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHh
Confidence            999999999999975 478999999998876653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.78  E-value=3.2e-19  Score=181.26  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~----------  153 (302)
                      ++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|......   ++++.+..|..          
T Consensus       493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN  572 (710)
T TIGR03796       493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN  572 (710)
T ss_pred             CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence            57899999999999999999999999999999999999999999999987632211   11111111110          


Q ss_pred             --------------------C-----------CC--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 --------------------D-----------VP--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 --------------------~-----------~~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                          +           ..  +-.........+..+-+||||+.++|+++|+|||+   |..+..
T Consensus       573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~  652 (710)
T TIGR03796       573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK  652 (710)
T ss_pred             hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence                                0           00  00011112223444445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.+    .++|+++++|+...+
T Consensus       653 ~i~~~l~~----~~~T~IiitHrl~~i  675 (710)
T TIGR03796       653 IIDDNLRR----RGCTCIIVAHRLSTI  675 (710)
T ss_pred             HHHHHHHh----cCCEEEEEecCHHHH
Confidence            99888875    378999999976543

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=4.1e-19  Score=177.98  Aligned_cols=137  Identities=15%  Similarity=0.011  Sum_probs=95.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------CC---C--hhHHHH-------H
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------TF---R--AAAYEQ-------L  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~~---~--~~~~~q-------l  146 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.+..        ..   +  .+...+       +
T Consensus        15 ~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l   94 (638)
T PRK10636         15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQL   94 (638)
T ss_pred             eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHH
Confidence            57899999999999999999999999999999999999999999886642        10   0  111110       0


Q ss_pred             H-------------Hh----------------------cccCCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881         147 L-------------IL----------------------GKYNDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVD  188 (302)
Q Consensus       147 ~-------------~~----------------------~~~~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllD  188 (302)
                      .             .+                      ...+++.  ... ........+..+-+||++++.+|++||||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD  174 (638)
T PRK10636         95 EAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD  174 (638)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence            0             00                      0001110  000 00111223344456999999999999999


Q ss_pred             CCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ||+   |+.+...+.+.|.++    +.+++++|||..++...
T Consensus       175 EPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~  212 (638)
T PRK10636        175 EPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPI  212 (638)
T ss_pred             CCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHh
Confidence            998   888888777777665    46899999998876543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.78  E-value=4.5e-19  Score=179.69  Aligned_cols=135  Identities=16%  Similarity=0.165  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~-----------  152 (302)
                      ++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.|+.....   ++++.+..|.           
T Consensus       479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN  558 (694)
T TIGR03375       479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN  558 (694)
T ss_pred             cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence            47899999999999999999999999999999999999999999999987643211   1111111111           


Q ss_pred             -------------------CCC-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 -------------------NDV-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 -------------------~~~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                         .++       |      .-.........+..+-+||||+.++|+++|+||||   |+.+..
T Consensus       559 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~  638 (694)
T TIGR03375       559 IALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE  638 (694)
T ss_pred             HhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence                               000       0      00011112233444556999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+++.|.++.+  ++|+++++|+...
T Consensus       639 ~i~~~l~~~~~--~~T~iiItHrl~~  662 (694)
T TIGR03375       639 RFKDRLKRWLA--GKTLVLVTHRTSL  662 (694)
T ss_pred             HHHHHHHHHhC--CCEEEEEecCHHH
Confidence            99999988753  6789999997654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=4.1e-19  Score=159.89  Aligned_cols=138  Identities=10%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCC----hh--H-HHHHHHhcccC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFR----AA--A-YEQLLILGKYN-  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~----~~--~-~~ql~~~~~~~-  153 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|     ++|+|.+.|.+...    ..  . ...+.+..+.. 
T Consensus        30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~  109 (265)
T PRK14252         30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN  109 (265)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence            578999999999999999999999999999999999875     68999998754320    00  0 00000001100 


Q ss_pred             ------------------------------------CCC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         154 ------------------------------------DVP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       154 ------------------------------------~~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                                                          ++.     .. .........+..+-+|++|++.+|+++|+|||+
T Consensus       110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  189 (265)
T PRK14252        110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT  189 (265)
T ss_pred             CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                                                000     00 000001112222334999999999999999997


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                         |..+...+.+.|.++.+  +.++++++|+...+..
T Consensus       190 ~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~  225 (265)
T PRK14252        190 SALDPIATASIEELISDLKN--KVTILIVTHNMQQAAR  225 (265)
T ss_pred             ccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHH
Confidence               99999999999999864  5789999998776544

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.9e-19  Score=158.76  Aligned_cols=139  Identities=12%  Similarity=0.118  Sum_probs=96.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--h---CCCeEEEecccCCCh---------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--K---RKKSVLLAACDTFRA---------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~---~~g~V~l~~~d~~~~---------------------  140 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++  |   ++|+|.+.|.++...                     
T Consensus        19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   98 (252)
T PRK14255         19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF   98 (252)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence            47899999999999999999999999999999999865  4   489999988765310                     


Q ss_pred             --hHHHHHHHhccc-------------------CCCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         141 --AAYEQLLILGKY-------------------NDVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       141 --~~~~ql~~~~~~-------------------~~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                        ...+.+......                   .+..     ... ........+..+-+||+|++.+|+++|+|||+  
T Consensus        99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~  178 (252)
T PRK14255         99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA  178 (252)
T ss_pred             CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence              011111100000                   0000     000 00001112223334999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |..+...+.+.|.++.+  +.++++++|+...+...
T Consensus       179 LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~  213 (252)
T PRK14255        179 LDPISSTQIENMLLELRD--QYTIILVTHSMHQASRI  213 (252)
T ss_pred             CCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHh
Confidence             99999999999999865  47899999997765543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=6e-19  Score=161.94  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCChh----H-HHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRAA----A-YEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~~----~-~~ql~~~~~~~~~-  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++     |++|+|.+.|.++.+..    . ...+.+..+...+ 
T Consensus        59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~  138 (305)
T PRK14264         59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPF  138 (305)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccc
Confidence            47899999999999999999999999999999999986     58999999987653211    0 0111111111100 


Q ss_pred             --------Ceee----------------c------------------------------CCCCCHHHHHHHHHHHHHhCC
Q psy2881         156 --------PVIS----------------E------------------------------KKITDPAAIAFNAINIAQKKN  181 (302)
Q Consensus       156 --------~~~~----------------~------------------------------~~~~~~~~~~~~~la~al~~~  181 (302)
                              .+..                .                              .......+..+-+||+|++++
T Consensus       139 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~  218 (305)
T PRK14264        139 PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD  218 (305)
T ss_pred             cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence                    0000                0                              000011122223499999999


Q ss_pred             CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         182 TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       182 ~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |+++|+|||+   |+.+...+++.|+++++  +.++++++|+...+..
T Consensus       219 p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~  264 (305)
T PRK14264        219 PEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAAR  264 (305)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH
Confidence            9999999997   99999999999999876  3689999998776543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.78  E-value=4.8e-19  Score=177.61  Aligned_cols=137  Identities=15%  Similarity=0.065  Sum_probs=95.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------C-CC-hhHHHH-H---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------T-FR-AAAYEQ-L---------  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~-~~-~~~~~q-l---------  146 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+..        . .. .....+ +         
T Consensus        17 ~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~   96 (635)
T PRK11147         17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAE   96 (635)
T ss_pred             eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHH
Confidence            57899999999999999999999999999999999999999999886521        0 00 000000 0         


Q ss_pred             ---------------------HHh----------------------cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCC
Q psy2881         147 ---------------------LIL----------------------GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTD  183 (302)
Q Consensus       147 ---------------------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~  183 (302)
                                           ..+                      ...+++..-.........+..+-+||++++.+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~  176 (635)
T PRK11147         97 YLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPD  176 (635)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCC
Confidence                                 000                      0001111000001112233444569999999999


Q ss_pred             eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         184 IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       184 llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ++|+|||+   |+.+...+.+.|+++    +.+++++|||..++...
T Consensus       177 lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~  219 (635)
T PRK11147        177 VLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNM  219 (635)
T ss_pred             EEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHh
Confidence            99999998   898888888888876    34889999998876543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=6.6e-19  Score=173.28  Aligned_cols=137  Identities=17%  Similarity=0.121  Sum_probs=96.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-C---------C-ChhHHHHH---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-T---------F-RAAAYEQL---------  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-~---------~-~~~~~~ql---------  146 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. +         + .....+.+         
T Consensus        15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~   94 (530)
T PRK15064         15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWE   94 (530)
T ss_pred             EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence            57899999999999999999999999999999999999999999886521 0         0 00111111         


Q ss_pred             -----------------------------------------HHhcccCCCCeee---cCCCCCHHHHHHHHHHHHHhCCC
Q psy2881         147 -----------------------------------------LILGKYNDVPVIS---EKKITDPAAIAFNAINIAQKKNT  182 (302)
Q Consensus       147 -----------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~al~~~~  182 (302)
                                                               ..+.+..+++-..   ........+..+-+||++++.+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p  174 (530)
T PRK15064         95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP  174 (530)
T ss_pred             HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCC
Confidence                                                     0111112221100   01112233444556999999999


Q ss_pred             CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         183 DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       183 ~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++|+|||+   |+.+...+++.|.+    .+.++++++||..++...
T Consensus       175 ~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~  218 (530)
T PRK15064        175 DILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSV  218 (530)
T ss_pred             CEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhh
Confidence            999999998   88888888887753    478999999998876543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.1e-18  Score=145.21  Aligned_cols=137  Identities=16%  Similarity=0.104  Sum_probs=96.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC---------------------hhHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR---------------------AAAYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~---------------------~~~~~q  145 (302)
                      .++.++||++.+|+++.|.||||+|||||+++|||+.+|++|+|.+.+..+..                     ..+.|.
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~EN   95 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN   95 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHH
Confidence            57889999999999999999999999999999999999999999999876532                     234455


Q ss_pred             HHHhcccCCC-C---e-----------eec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         146 LLILGKYNDV-P---V-----------ISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       146 l~~~~~~~~~-~---~-----------~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                      ++.|....+- +   .           +..  -......+..+-+|||..+..+++.|+|||+   |......+-..+..
T Consensus        96 L~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~  175 (209)
T COG4133          96 LHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA  175 (209)
T ss_pred             HHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHH
Confidence            5555443321 0   0           000  0001122333445899999999999999997   76666655555555


Q ss_pred             HHHHhchhhccccceeehh
Q psy2881         206 IKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~lv  224 (302)
                      -+. .|..++.+||...-.
T Consensus       176 H~~-~GGiVllttHq~l~~  193 (209)
T COG4133         176 HAA-QGGIVLLTTHQPLPI  193 (209)
T ss_pred             Hhc-CCCEEEEecCCccCC
Confidence            443 466777889965543

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.78  E-value=9e-19  Score=172.95  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=100.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-----------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-----------------------  143 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-----------------------  143 (302)
                      ++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.+.......                       
T Consensus       337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  416 (547)
T PRK10522        337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE  416 (547)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence            378899999999999999999999999999999999999999999999876422110                       


Q ss_pred             ------HHHHHhcccCCCCeee--c-----CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         144 ------EQLLILGKYNDVPVIS--E-----KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       144 ------~ql~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                            +.+..+.+..+.....  .     .......+..+-+||||++++|+++|+|||+   |+.+...+++.+.+..
T Consensus       417 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~  496 (547)
T PRK10522        417 GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLL  496 (547)
T ss_pred             cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence                  1111111111211110  0     1122334555566999999999999999998   8888888888887665


Q ss_pred             HHhchhhccccceee
Q psy2881         208 KVIEKKIFELPYEIF  222 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~  222 (302)
                      +..++|+++++|+..
T Consensus       497 ~~~~~tvi~itH~~~  511 (547)
T PRK10522        497 QEMGKTIFAISHDDH  511 (547)
T ss_pred             HhCCCEEEEEEechH
Confidence            444789999999754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.78  E-value=5.4e-19  Score=179.51  Aligned_cols=134  Identities=19%  Similarity=0.237  Sum_probs=97.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      ++++|+||++++|+.++|+|||||||||+++.|+|++.|++|+|.++|.|.....                     .+++
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN  567 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN  567 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence            5789999999999999999999999999999999999999999999998753211                     1111


Q ss_pred             HHHh-------------cccCCC-----------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         146 LLIL-------------GKYNDV-----------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       146 l~~~-------------~~~~~~-----------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                      +...             .+..++           .  +-.........+..+-+||||+.++|+++|+||||   |..+.
T Consensus       568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te  647 (708)
T TIGR01193       568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE  647 (708)
T ss_pred             HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence            1111             000000           0  00011112233444455999999999999999998   89999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      ..+++.|.++   .++|+++++|+...
T Consensus       648 ~~i~~~L~~~---~~~T~IiitHr~~~  671 (708)
T TIGR01193       648 KKIVNNLLNL---QDKTIIFVAHRLSV  671 (708)
T ss_pred             HHHHHHHHHh---cCCEEEEEecchHH
Confidence            9999999874   36789999997654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.78  E-value=6.4e-19  Score=174.88  Aligned_cols=135  Identities=13%  Similarity=0.155  Sum_probs=99.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---------------------HHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---------------------YEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---------------------~~q  145 (302)
                      ++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.....                     .+.
T Consensus       354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N  433 (574)
T PRK11160        354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN  433 (574)
T ss_pred             cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence            47899999999999999999999999999999999999999999999987542211                     111


Q ss_pred             HH------------HhcccCCCC-eee-----------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         146 LL------------ILGKYNDVP-VIS-----------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       146 l~------------~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +.            ...+..++. +..           ........+..+-+||||++++|+++|+|||+   |+.+...
T Consensus       434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~  513 (574)
T PRK11160        434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ  513 (574)
T ss_pred             hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            11            111111111 000           01112234455556999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeeh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +++.|.++.  .++|+++++|+...
T Consensus       514 i~~~l~~~~--~~~tviiitHr~~~  536 (574)
T PRK11160        514 ILELLAEHA--QNKTVLMITHRLTG  536 (574)
T ss_pred             HHHHHHHHc--CCCEEEEEecChhH
Confidence            999998875  36899999997654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.77  E-value=8.9e-19  Score=170.79  Aligned_cols=140  Identities=12%  Similarity=0.023  Sum_probs=96.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCCh-h---HHHHHHHhcccCCC------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRA-A---AYEQLLILGKYNDV------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~-~---~~~ql~~~~~~~~~------  155 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+.++ ++|+|.+.|.+.... .   ....+.++.+....      
T Consensus       274 ~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  353 (490)
T PRK10938        274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST  353 (490)
T ss_pred             eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC
Confidence            368899999999999999999999999999999998765 689999998654210 0   01111111111000      


Q ss_pred             --------Ceee--cCC---C---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         156 --------PVIS--EKK---I---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       156 --------~~~~--~~~---~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                              .+..  ...   .                           ....+..+-+||+|++.+|+++|+|||+   |
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD  433 (490)
T PRK10938        354 SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD  433 (490)
T ss_pred             cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence                    0000  000   0                           0001112223999999999999999997   9


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+...+++.|.++++..+.+++++|||...+..
T Consensus       434 ~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~  467 (490)
T PRK10938        434 PLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA  467 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence            9999999999999987534468999999877644

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=6.5e-19  Score=157.16  Aligned_cols=139  Identities=12%  Similarity=0.115  Sum_probs=96.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh-----hHHHHHHHhcccCCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA-----AAYEQLLILGKYNDV-  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~-----~~~~ql~~~~~~~~~-  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+..     |++|+|.++|.++...     .....+.+..+...+ 
T Consensus        17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~   96 (250)
T PRK14266         17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF   96 (250)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence            57899999999999999999999999999999999864     3789999999775321     001111111111000 


Q ss_pred             --------Ceeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         156 --------PVISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       156 --------~~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                              .+...                                  .......+..+-+||+|++.+|+++|+|||+  
T Consensus        97 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g  176 (250)
T PRK14266         97 PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA  176 (250)
T ss_pred             cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence                    00000                                  0001112222233999999999999999997  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                       |..+...+.+.|.++.+  +.++++++|+...+...
T Consensus       177 LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~~  211 (250)
T PRK14266        177 LDPISTTKIEDLIHKLKE--DYTIVIVTHNMQQATRV  211 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCeEEEEECCHHHHHhh
Confidence             99999999999998853  67999999987665443

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.77  E-value=8.7e-19  Score=173.81  Aligned_cols=135  Identities=13%  Similarity=0.168  Sum_probs=98.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~-----------  152 (302)
                      ++++++||++++|+.++|+|+||||||||++.|+|+++|++|+|.++|.+......   .+++.+..|.           
T Consensus       346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N  425 (571)
T TIGR02203       346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN  425 (571)
T ss_pred             ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence            47899999999999999999999999999999999999999999999976432111   0111111111           


Q ss_pred             --------------------CCC-----------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         153 --------------------NDV-----------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       153 --------------------~~~-----------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                          .++           .  +-.........++.+-+||||+.++|+++|+|||+   |..+.
T Consensus       426 i~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~  505 (571)
T TIGR02203       426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE  505 (571)
T ss_pred             HhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence                                010           0  00011112334455556999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +.+++.|.++.+  +++++++||+...
T Consensus       506 ~~i~~~L~~~~~--~~tiIiitH~~~~  530 (571)
T TIGR02203       506 RLVQAALERLMQ--GRTTLVIAHRLST  530 (571)
T ss_pred             HHHHHHHHHHhC--CCEEEEEehhhHH
Confidence            999999988743  5799999998654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.77  E-value=9.2e-19  Score=144.17  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             HHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-----CCChhHHHHH------
Q psy2881          80 LLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-----TFRAAAYEQL------  146 (302)
Q Consensus        80 ~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-----~~~~~~~~ql------  146 (302)
                      .+.+.+.+  -.+++||++.|||+.+|+|.+|||||||+++|++.+.|+.|.|.+...+     ++..+..+.-      
T Consensus        11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTe   90 (258)
T COG4107          11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE   90 (258)
T ss_pred             hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhc
Confidence            34455543  4689999999999999999999999999999999999999999998744     3322221111      


Q ss_pred             -HHhcccC--CCCeeecC---------------CC--------------------------CCHHHHHHHHHHHHHhCCC
Q psy2881         147 -LILGKYN--DVPVISEK---------------KI--------------------------TDPAAIAFNAINIAQKKNT  182 (302)
Q Consensus       147 -~~~~~~~--~~~~~~~~---------------~~--------------------------~~~~~~~~~~la~al~~~~  182 (302)
                       ...-+..  ++......               ++                          ..-....+-.|||-++..|
T Consensus        91 WG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~P  170 (258)
T COG4107          91 WGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRP  170 (258)
T ss_pred             cceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCC
Confidence             1111110  00000000               00                          0001111122999999999


Q ss_pred             CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         183 DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       183 ~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .++++|||+   |..-++.+++.++.+....+.++++++||+..
T Consensus       171 rLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V  214 (258)
T COG4107         171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV  214 (258)
T ss_pred             ceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH
Confidence            999999997   88999999999999999999999999998764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.77  E-value=1e-18  Score=174.02  Aligned_cols=135  Identities=18%  Similarity=0.220  Sum_probs=98.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++|+++++|+.++|+|+||||||||++.|+|+++|++|.|.++|.++......   .++.+..+...         
T Consensus       349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N  428 (588)
T PRK13657        349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN  428 (588)
T ss_pred             ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence            478999999999999999999999999999999999999999999999775432111   11111111100         


Q ss_pred             --------------------------------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 --------------------------------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 --------------------------------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                      ....  .........+..+-+||||+.++|+++|+|||+   |+.+..
T Consensus       429 i~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~  508 (588)
T PRK13657        429 IRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEA  508 (588)
T ss_pred             HhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence                                            0000  000112223444455999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+++.|.++.+  ++|++++||+...
T Consensus       509 ~i~~~l~~~~~--~~tvIiitHr~~~  532 (588)
T PRK13657        509 KVKAALDELMK--GRTTFIIAHRLST  532 (588)
T ss_pred             HHHHHHHHHhc--CCEEEEEEecHHH
Confidence            99999987743  6899999997654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.3e-18  Score=164.75  Aligned_cols=135  Identities=14%  Similarity=0.127  Sum_probs=102.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~--------  155 (302)
                      ++++|+||++.+||.++|+|++||||||++..|+|.+.|++|+|.++|.++.....   ++++....|+.++        
T Consensus       352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N  431 (573)
T COG4987         352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN  431 (573)
T ss_pred             chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999988753322   3334333333221        


Q ss_pred             -Ce--------------------------------e--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 -PV--------------------------------I--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 -~~--------------------------------~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                       ..                                +  ....+..-.+..+-+|||++.++.+++|+||||   |+.+..
T Consensus       432 L~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~  511 (573)
T COG4987         432 LRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER  511 (573)
T ss_pred             HhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence             00                                0  000011112333345999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      ++++.|.+-.+  ++|++++||+...
T Consensus       512 ~vL~ll~~~~~--~kTll~vTHrL~~  535 (573)
T COG4987         512 QVLALLFEHAE--GKTLLMVTHRLRG  535 (573)
T ss_pred             HHHHHHHHHhc--CCeEEEEeccccc
Confidence            99999987664  8899999996543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.77  E-value=1.4e-18  Score=171.42  Aligned_cols=135  Identities=14%  Similarity=0.123  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.+.......   ..+.+..+...         
T Consensus       332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  411 (544)
T TIGR01842       332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN  411 (544)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence            478899999999999999999999999999999999999999999998775322110   01111111100         


Q ss_pred             ----------------------------C----Cee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 ----------------------------V----PVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ----------------------------~----~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                  +    ...  .........+..+-+||||+.++|+++|+|||+   |..+..
T Consensus       412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~  491 (544)
T TIGR01842       412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ  491 (544)
T ss_pred             HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence                                        0    000  000111223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceee
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      .+++.|.++.. .++++++++|+..
T Consensus       492 ~i~~~l~~~~~-~~~tvi~ith~~~  515 (544)
T TIGR01842       492 ALANAIKALKA-RGITVVVITHRPS  515 (544)
T ss_pred             HHHHHHHHHhh-CCCEEEEEeCCHH
Confidence            99999988753 3678999999754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.77  E-value=1.5e-18  Score=171.68  Aligned_cols=136  Identities=15%  Similarity=0.090  Sum_probs=97.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HH------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQ------------------  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~q------------------  145 (302)
                      ++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.++......   .+                  
T Consensus       356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  435 (555)
T TIGR01194       356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD  435 (555)
T ss_pred             ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence            378899999999999999999999999999999999999999999999876432211   11                  


Q ss_pred             ---------HHHhcccCCCCeee-c---C----CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHH
Q psy2881         146 ---------LLILGKYNDVPVIS-E---K----KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKK  205 (302)
Q Consensus       146 ---------l~~~~~~~~~~~~~-~---~----~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~  205 (302)
                               +..+.+..++.-+. .   .    ......+..+-+||||++.+|+++|+|||+   |+.+...+.+.+.+
T Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~  515 (555)
T TIGR01194       436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP  515 (555)
T ss_pred             cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence                     11111111111000 0   0    112223444456999999999999999998   88888888776653


Q ss_pred             HHHHhchhhccccceee
Q psy2881         206 IKKVIEKKIFELPYEIF  222 (302)
Q Consensus       206 l~~~~~~~i~~~~hd~~  222 (302)
                      .....++|+++++|+..
T Consensus       516 ~~~~~~~tiiiisH~~~  532 (555)
T TIGR01194       516 DLKRQGKTIIIISHDDQ  532 (555)
T ss_pred             HHHhCCCEEEEEeccHH
Confidence            22334789999999754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.77  E-value=1.3e-18  Score=172.61  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      ++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.+.....                     ..+.
T Consensus       329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  408 (569)
T PRK10789        329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN  408 (569)
T ss_pred             ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence            4788999999999999999999999999999999999999999999987653211                     1111


Q ss_pred             HHHh------------cccCCC-------C----ee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         146 LLIL------------GKYNDV-------P----VI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       146 l~~~------------~~~~~~-------~----~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +...            .+..++       |    ..  .........+..+-+||||++++|+++|+|||+   |+.+..
T Consensus       409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~  488 (569)
T PRK10789        409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH  488 (569)
T ss_pred             HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence            1100            000000       0    00  000112223444456999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+++.|.++.  .++|+++++|+...
T Consensus       489 ~i~~~l~~~~--~~~tii~itH~~~~  512 (569)
T PRK10789        489 QILHNLRQWG--EGRTVIISAHRLSA  512 (569)
T ss_pred             HHHHHHHHHh--CCCEEEEEecchhH
Confidence            9999998874  37899999997643

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=9.6e-19  Score=172.13  Aligned_cols=137  Identities=16%  Similarity=0.124  Sum_probs=97.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--------C---C--ChhHHHHHHHh----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--------T---F--RAAAYEQLLIL----  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--------~---~--~~~~~~ql~~~----  149 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+..        .   +  .....+.+..+    
T Consensus       333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~  412 (530)
T PRK15064        333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEG  412 (530)
T ss_pred             eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCC
Confidence            47889999999999999999999999999999999999999999876521        1   0  01222222211    


Q ss_pred             ---------cccCCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881         150 ---------GKYNDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI  214 (302)
Q Consensus       150 ---------~~~~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i  214 (302)
                               ...+++.  ... ........+..+-+||++++.+|+++|+|||+   |+.+...+++.|.++    +.++
T Consensus       413 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tv  488 (530)
T PRK15064        413 DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTL  488 (530)
T ss_pred             ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEE
Confidence                     1112221  000 01111223444556999999999999999998   888888888888776    3589


Q ss_pred             ccccceeehhhcC
Q psy2881         215 FELPYEIFLIIDG  227 (302)
Q Consensus       215 ~~~~hd~~lvl~~  227 (302)
                      +++|||..++...
T Consensus       489 i~vsHd~~~~~~~  501 (530)
T PRK15064        489 IFVSHDREFVSSL  501 (530)
T ss_pred             EEEeCCHHHHHHh
Confidence            9999998775543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.76  E-value=1.7e-18  Score=157.11  Aligned_cols=137  Identities=15%  Similarity=0.130  Sum_probs=94.0

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHh--------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLIL--------  149 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~--------  149 (302)
                      +++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.      +.  +.....+.+...        
T Consensus        50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~  129 (282)
T cd03291          50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRY  129 (282)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHH
Confidence            45899999999999999999999999999999999999999999887541      11  111111111110        


Q ss_pred             ---cccCCC-------Ce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHH
Q psy2881         150 ---GKYNDV-------PV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKV  209 (302)
Q Consensus       150 ---~~~~~~-------~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~  209 (302)
                         ....++       +.     . .........+..+-+||++++.+|+++|+|||+   |+.....+++.+ ..+.  
T Consensus       130 ~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--  207 (282)
T cd03291         130 KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--  207 (282)
T ss_pred             HHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--
Confidence               000111       00     0 000122344555566999999999999999997   888777777754 4443  


Q ss_pred             hchhhccccceeehh
Q psy2881         210 IEKKIFELPYEIFLI  224 (302)
Q Consensus       210 ~~~~i~~~~hd~~lv  224 (302)
                      .+.++++++|+...+
T Consensus       208 ~~~tIiiisH~~~~~  222 (282)
T cd03291         208 ANKTRILVTSKMEHL  222 (282)
T ss_pred             CCCEEEEEeCChHHH
Confidence            267899999986653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.76  E-value=1.6e-18  Score=172.18  Aligned_cols=135  Identities=14%  Similarity=0.171  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~-----------  152 (302)
                      ++++++||++++|+.++|+||||||||||++.|+|+++|++|+|.++|.+......   ++++.+..+.           
T Consensus       354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N  433 (576)
T TIGR02204       354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN  433 (576)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence            47899999999999999999999999999999999999999999999876432111   0111111111           


Q ss_pred             -------------------CC-----------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 -------------------ND-----------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 -------------------~~-----------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                         .+           ....  .........+..+-++|||+.++|+++|+|||+   |+.+..
T Consensus       434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~  513 (576)
T TIGR02204       434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ  513 (576)
T ss_pred             HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHH
Confidence                               00           0000  001112223444456999999999999999998   888888


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+++.|+++.+  +++++++||+...
T Consensus       514 ~i~~~l~~~~~--~~t~IiitH~~~~  537 (576)
T TIGR02204       514 LVQQALETLMK--GRTTLIIAHRLAT  537 (576)
T ss_pred             HHHHHHHHHhC--CCEEEEEecchHH
Confidence            89999988753  6899999997654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.76  E-value=1.8e-18  Score=172.08  Aligned_cols=136  Identities=17%  Similarity=0.179  Sum_probs=97.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~----------  153 (302)
                      ++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.+......   .+++.+..+..          
T Consensus       349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N  428 (585)
T TIGR01192       349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN  428 (585)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHH
Confidence            36889999999999999999999999999999999999999999999876532111   00111111110          


Q ss_pred             --------------------C-------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 --------------------D-------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 --------------------~-------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                          +       .|      .-.........+..+-+||||++.+|+++|+|||+   |..+..
T Consensus       429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~  508 (585)
T TIGR01192       429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA  508 (585)
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence                                0       00      00000111223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.++.  .++++++++|+...+
T Consensus       509 ~i~~~l~~~~--~~~tvI~isH~~~~~  533 (585)
T TIGR01192       509 RVKNAIDALR--KNRTTFIIAHRLSTV  533 (585)
T ss_pred             HHHHHHHHHh--CCCEEEEEEcChHHH
Confidence            9999998774  378999999986554

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.76  E-value=2.2e-18  Score=174.72  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=99.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~-----------  152 (302)
                      ++++++||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|.......   .++.+..+.           
T Consensus       471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN  550 (694)
T TIGR01846       471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN  550 (694)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence            478999999999999999999999999999999999999999999999876432111   111111111           


Q ss_pred             -------------------CC-----------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 -------------------ND-----------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 -------------------~~-----------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                         .+           ....  .........+..+-+||||++++|+++|+|||+   |+.+..
T Consensus       551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~  630 (694)
T TIGR01846       551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA  630 (694)
T ss_pred             HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHH
Confidence                               00           0000  001112233444445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|.++.  .++|+++++|+...+
T Consensus       631 ~i~~~l~~~~--~~~t~i~itH~~~~~  655 (694)
T TIGR01846       631 LIMRNMREIC--RGRTVIIIAHRLSTV  655 (694)
T ss_pred             HHHHHHHHHh--CCCEEEEEeCChHHH
Confidence            9999998874  368999999976543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.76  E-value=1.2e-18  Score=176.84  Aligned_cols=133  Identities=18%  Similarity=0.207  Sum_probs=93.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~-----------  152 (302)
                      ++++|+||++++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|+.....   ++++.+..|.           
T Consensus       495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN  574 (711)
T TIGR00958       495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN  574 (711)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence            47899999999999999999999999999999999999999999999987532111   1111111111           


Q ss_pred             -------------------CCC-----------C--eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 -------------------NDV-----------P--VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 -------------------~~~-----------~--~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                         .++           .  .-.........++.+-+||||+.++|+++|+|||+   |..+..
T Consensus       575 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~  654 (711)
T TIGR00958       575 IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ  654 (711)
T ss_pred             HhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHH
Confidence                               000           0  00001112234444556999999999999999998   887776


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+.+ ..   ...++|+++++|+...
T Consensus       655 ~i~~-~~---~~~~~TvIiItHrl~~  676 (711)
T TIGR00958       655 LLQE-SR---SRASRTVLLIAHRLST  676 (711)
T ss_pred             HHHH-hh---ccCCCeEEEEeccHHH
Confidence            6665 21   2246899999997543

>PRK13409 putative ATPase RIL; Provisional

Probab=99.76  E-value=7.3e-19  Score=174.27  Aligned_cols=140  Identities=19%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe------cccC---CChhHHHHHHHh----------
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA------ACDT---FRAAAYEQLLIL----------  149 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~------~~d~---~~~~~~~ql~~~----------  149 (302)
                      ++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.      -++.   ......+.+...          
T Consensus       355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~  434 (590)
T PRK13409        355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK  434 (590)
T ss_pred             EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHH
Confidence            567888899999999999999999999999999999999999763      1111   011122222111          


Q ss_pred             ---cccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         150 ---GKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       150 ---~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                         .+.+++.-..  ........+..+-+||+|++.+|+++|+|||+   |..+...+++.|+++++..+.++++++||.
T Consensus       435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~  514 (590)
T PRK13409        435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI  514 (590)
T ss_pred             HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence               1111111000  00112223444556999999999999999998   999999999999999877688999999998


Q ss_pred             ehhhcCC
Q psy2881         222 FLIIDGN  228 (302)
Q Consensus       222 ~lvl~~~  228 (302)
                      .++...+
T Consensus       515 ~~~~~~a  521 (590)
T PRK13409        515 YMIDYIS  521 (590)
T ss_pred             HHHHHhC
Confidence            8766544

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.4e-18  Score=174.15  Aligned_cols=138  Identities=15%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc-cC----CC--------hhHHHHHH------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC-DT----FR--------AAAYEQLL------  147 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~-d~----~~--------~~~~~ql~------  147 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|.++|++|+|.+.+. .+    +.        ....+.+.      
T Consensus       326 ~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~  405 (638)
T PRK10636        326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQE  405 (638)
T ss_pred             eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchh
Confidence            4789999999999999999999999999999999999999999987421 10    00        00111111      


Q ss_pred             ------HhcccCCCCe--e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881         148 ------ILGKYNDVPV--I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF  215 (302)
Q Consensus       148 ------~~~~~~~~~~--~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~  215 (302)
                            .+...+++.-  . .........+..+-+||++++.+|+++|||||+   |+.+...+.+.|.++    +.+++
T Consensus       406 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi  481 (638)
T PRK10636        406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALV  481 (638)
T ss_pred             hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEE
Confidence                  1111112210  0 000111223344456999999999999999998   999999999998877    34899


Q ss_pred             cccceeehhhcCC
Q psy2881         216 ELPYEIFLIIDGN  228 (302)
Q Consensus       216 ~~~hd~~lvl~~~  228 (302)
                      ++|||..++...+
T Consensus       482 ~vSHd~~~~~~~~  494 (638)
T PRK10636        482 VVSHDRHLLRSTT  494 (638)
T ss_pred             EEeCCHHHHHHhC
Confidence            9999988765543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.76  E-value=2.4e-18  Score=170.58  Aligned_cols=135  Identities=20%  Similarity=0.194  Sum_probs=98.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++|+|||||||||+++.|++++.|++|+|.++|.|+......   +++....|..          
T Consensus       343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~N  422 (567)
T COG1132         343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN  422 (567)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHH
Confidence            578899999999999999999999999999999999999999999988886432211   1111111110          


Q ss_pred             -------------------------------CCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 -------------------------------DVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 -------------------------------~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                     |.....  ........++.+-+||||++++|+++++||||   |..+..
T Consensus       423 I~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~  502 (567)
T COG1132         423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA  502 (567)
T ss_pred             HhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence                                           000011  11112234455556999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+.+.+.++.+  ++|+++++|....
T Consensus       503 ~I~~~l~~l~~--~rT~iiIaHRlst  526 (567)
T COG1132         503 LIQDALKKLLK--GRTTLIIAHRLST  526 (567)
T ss_pred             HHHHHHHHHhc--CCEEEEEeccHhH
Confidence            99999987763  4677889997643

>KOG0055|consensus

Probab=99.76  E-value=2.3e-18  Score=176.67  Aligned_cols=138  Identities=20%  Similarity=0.196  Sum_probs=99.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~-----------  152 (302)
                      ++++++||.+++|+.++|||||||||||++..|.++|.|++|+|.++|.|.......   .++..+.|.           
T Consensus       367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eN  446 (1228)
T KOG0055|consen  367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIREN  446 (1228)
T ss_pred             hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHH
Confidence            478899999999999999999999999999999999999999999999997532210   111111111           


Q ss_pred             --------------------------------CCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 --------------------------------NDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 --------------------------------~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                      ++..+-.......-.++.+-+||||++++|++|||||||   |+.+..
T Consensus       447 I~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~  526 (1228)
T KOG0055|consen  447 IRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER  526 (1228)
T ss_pred             HhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence                                            000000000011122333445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.|.+..+  |+|.++++|.+-.+-.
T Consensus       527 ~Vq~ALd~~~~--grTTivVaHRLStIrn  553 (1228)
T KOG0055|consen  527 VVQEALDKASK--GRTTIVVAHRLSTIRN  553 (1228)
T ss_pred             HHHHHHHHhhc--CCeEEEEeeehhhhhc
Confidence            99999987753  6788889996654443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.3e-18  Score=161.14  Aligned_cols=138  Identities=12%  Similarity=0.109  Sum_probs=97.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-----hCCCeEEEecccCCCh--h------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-----KRKKSVLLAACDTFRA--A------------------  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-----~~~g~V~l~~~d~~~~--~------------------  141 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+..     |++|+|.++|.++...  .                  
T Consensus        96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~  175 (329)
T PRK14257         96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF  175 (329)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence            47999999999999999999999999999999999986     4689999998876310  0                  


Q ss_pred             ---HHHHHHHhc-------------------ccCCCC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC--
Q psy2881         142 ---AYEQLLILG-------------------KYNDVP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG--  191 (302)
Q Consensus       142 ---~~~ql~~~~-------------------~~~~~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~--  191 (302)
                         ..+.+....                   +..++.      .-.........+..+-+||||++.+|+++|+|||+  
T Consensus       176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~  255 (329)
T PRK14257        176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA  255 (329)
T ss_pred             CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence               011111000                   000000      00000001112233334999999999999999998  


Q ss_pred             -CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 -RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 -d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                       |+.+...+.+.|+++.+  +.|+++++|++..+.+
T Consensus       256 LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~  289 (329)
T PRK14257        256 LDPIATAKIEELILELKK--KYSIIIVTHSMAQAQR  289 (329)
T ss_pred             CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence             99999999999988864  5799999998777655

>KOG0057|consensus

Probab=99.75  E-value=2.1e-18  Score=163.45  Aligned_cols=138  Identities=17%  Similarity=0.204  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhccc-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKY-----------  152 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~-----------  152 (302)
                      ++++++||++++|+-++|+|+|||||||.++.|.+++. .+|+|+++|+|+.....   +.-+.+.+|.           
T Consensus       366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N  444 (591)
T KOG0057|consen  366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN  444 (591)
T ss_pred             ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence            38899999999999999999999999999999999999 89999999999753221   1111111111           


Q ss_pred             -------------------CCCC---------ee----ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         153 -------------------NDVP---------VI----SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       153 -------------------~~~~---------~~----~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                         .++.         +.    .......-.+..+-+++||++.+|+++++||||   |..+..
T Consensus       445 I~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~  524 (591)
T KOG0057|consen  445 IKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETER  524 (591)
T ss_pred             hhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHH
Confidence                               1100         00    000000112233344999999999999999999   899999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ++++.+.+.  ..++|++++-|+..++.++
T Consensus       525 ~i~~~i~~~--~~~rTvI~IvH~l~ll~~~  552 (591)
T KOG0057|consen  525 EILDMIMDV--MSGRTVIMIVHRLDLLKDF  552 (591)
T ss_pred             HHHHHHHHh--cCCCeEEEEEecchhHhcC
Confidence            999999883  3488999999988876554

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.75  E-value=2.1e-18  Score=187.40  Aligned_cols=139  Identities=16%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------------hHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------------AAYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------------~~~~q  145 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.+.                     ...+.
T Consensus      1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257      1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred             eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence            488999999999999999999999999999999999999999999999876321                     11111


Q ss_pred             HHHhcccCCCCe------------------eec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         146 LLILGKYNDVPV------------------ISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       146 l~~~~~~~~~~~------------------~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                      +..++...+++-                  +..  .......++.+-.+|+|++.+|+++|+|||+   |+..+..+++.
T Consensus      2033 L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~l 2112 (2272)
T TIGR01257      2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT 2112 (2272)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence            211111111100                  000  0000011112223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |.++.+. |++++++||++..+..
T Consensus      2113 L~~l~~~-g~TIILtTH~mee~e~ 2135 (2272)
T TIGR01257      2113 IVSIIRE-GRAVVLTSHSMEECEA 2135 (2272)
T ss_pred             HHHHHhC-CCEEEEEeCCHHHHHH
Confidence            9998765 8899999999877654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.75  E-value=3.1e-18  Score=171.75  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=94.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC------C-------ChhHHHHHHHhcc--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT------F-------RAAAYEQLLILGK--  151 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~------~-------~~~~~~ql~~~~~--  151 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+ +.+.      +       .....+.+.....  
T Consensus       333 ~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~  411 (635)
T PRK11147        333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEV  411 (635)
T ss_pred             EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence            4788999999999999999999999999999999999999999987 4321      0       0112222221100  


Q ss_pred             --------------cCCCCe--ee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhc
Q psy2881         152 --------------YNDVPV--IS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIE  211 (302)
Q Consensus       152 --------------~~~~~~--~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~  211 (302)
                                    .+++.-  .. ........+..+-+||++++.+|++||+|||+   |+.+...+.+.|.++    +
T Consensus       412 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~  487 (635)
T PRK11147        412 MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----Q  487 (635)
T ss_pred             cccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----C
Confidence                          011100  00 00011223334445999999999999999998   888887777777665    4


Q ss_pred             hhhccccceeehhhcC
Q psy2881         212 KKIFELPYEIFLIIDG  227 (302)
Q Consensus       212 ~~i~~~~hd~~lvl~~  227 (302)
                      .+++++|||..++...
T Consensus       488 ~tvi~vSHd~~~~~~~  503 (635)
T PRK11147        488 GTVLLVSHDRQFVDNT  503 (635)
T ss_pred             CeEEEEECCHHHHHHh
Confidence            5899999998876543

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=2.2e-18  Score=170.90  Aligned_cols=148  Identities=15%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             HHHHHHHHhh---ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-----------EecccCCChhH
Q psy2881          77 LHNLLVNLLK---SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-----------LAACDTFRAAA  142 (302)
Q Consensus        77 l~~~l~~~l~---~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-----------l~~~d~~~~~~  142 (302)
                      +...+...+.   .++++++ .+++|++++|+||||||||||+++|+|+++|+.|+|.           +.|.++.....
T Consensus        75 ~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~  153 (590)
T PRK13409         75 LEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK  153 (590)
T ss_pred             hccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence            3444555554   2688999 8999999999999999999999999999999999997           66665421100


Q ss_pred             ---------------HHH------------H---------HHhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCe
Q psy2881         143 ---------------YEQ------------L---------LILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDI  184 (302)
Q Consensus       143 ---------------~~q------------l---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~l  184 (302)
                                     ..+            +         ..+.+.+++.-..  ........+..+-+||+|++.+|++
T Consensus       154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l  233 (590)
T PRK13409        154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF  233 (590)
T ss_pred             HHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence                           000            0         0000001110000  0000111223333499999999999


Q ss_pred             EEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         185 VIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       185 lllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +|+|||+   |+.....+.+.|+++.+  +.++++++||...+...
T Consensus       234 llLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~  277 (590)
T PRK13409        234 YFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYL  277 (590)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHh
Confidence            9999998   99999999999999875  88999999998766543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.74  E-value=4.1e-18  Score=168.42  Aligned_cols=137  Identities=12%  Similarity=0.066  Sum_probs=96.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC---C-ChhHHHHHHHh-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT---F-RAAAYEQLLIL-----  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~---~-~~~~~~ql~~~-----  149 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.        +.   + .....+.+...     
T Consensus       336 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~  415 (552)
T TIGR03719       336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ  415 (552)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence            4788999999999999999999999999999999999999999987321        11   1 11222332221     


Q ss_pred             -----------cccCCCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881         150 -----------GKYNDVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK  212 (302)
Q Consensus       150 -----------~~~~~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~  212 (302)
                                 ...+++.- . . ........+..+-+||++++.+|+++|+|||+   |+.+...+++.|.++.   + 
T Consensus       416 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-  491 (552)
T TIGR03719       416 LGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-  491 (552)
T ss_pred             cCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-
Confidence                       11112210 0 0 01112233444556999999999999999998   9999999999888872   3 


Q ss_pred             hhccccceeehhhcC
Q psy2881         213 KIFELPYEIFLIIDG  227 (302)
Q Consensus       213 ~i~~~~hd~~lvl~~  227 (302)
                      +++++|||..++...
T Consensus       492 ~viivsHd~~~~~~~  506 (552)
T TIGR03719       492 CAVVISHDRWFLDRI  506 (552)
T ss_pred             eEEEEeCCHHHHHHh
Confidence            788999998775543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.74  E-value=5.9e-18  Score=167.26  Aligned_cols=137  Identities=13%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC--C-ChhHHHHHHHh------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT--F-RAAAYEQLLIL------  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~--~-~~~~~~ql~~~------  149 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.        +.  + .....+.+...      
T Consensus        19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~   98 (552)
T TIGR03719        19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD   98 (552)
T ss_pred             eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence            4789999999999999999999999999999999999999999987531        11  0 11222222110      


Q ss_pred             ------------------------------------------------cccCCCCeee-cCCCCCHHHHHHHHHHHHHhC
Q psy2881         150 ------------------------------------------------GKYNDVPVIS-EKKITDPAAIAFNAINIAQKK  180 (302)
Q Consensus       150 ------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~la~al~~  180 (302)
                                                                      ....+++... ........+..+-+||++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~  178 (552)
T TIGR03719        99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLS  178 (552)
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence                                                            0001111000 001112334455569999999


Q ss_pred             CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         181 NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       181 ~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +|+++|+|||+   |+.+...+.+.|.++    +.+++++|||..++...
T Consensus       179 ~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~  224 (552)
T TIGR03719       179 KPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNV  224 (552)
T ss_pred             CCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence            99999999998   999888888888765    34889999998766543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.74  E-value=6.2e-18  Score=167.25  Aligned_cols=137  Identities=13%  Similarity=0.080  Sum_probs=96.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC--C-ChhHHHHHHHh------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT--F-RAAAYEQLLIL------  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~--~-~~~~~~ql~~~------  149 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.        +.  + .....+.+...      
T Consensus        21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~  100 (556)
T PRK11819         21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA  100 (556)
T ss_pred             eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence            5789999999999999999999999999999999999999999987531        11  1 11222222110      


Q ss_pred             ------------------------------------------------cccCCCCeee-cCCCCCHHHHHHHHHHHHHhC
Q psy2881         150 ------------------------------------------------GKYNDVPVIS-EKKITDPAAIAFNAINIAQKK  180 (302)
Q Consensus       150 ------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~la~al~~  180 (302)
                                                                      .+..+++... ........+..+-+||+|++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~  180 (556)
T PRK11819        101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE  180 (556)
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhC
Confidence                                                            0011111000 001112234445569999999


Q ss_pred             CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         181 NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       181 ~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +|+++|+|||+   |+.+...+.+.|+++    +.+++++|||..++...
T Consensus       181 ~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~  226 (556)
T PRK11819        181 KPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNV  226 (556)
T ss_pred             CCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence            99999999998   998888888888876    24889999998776543

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.74  E-value=3.7e-18  Score=171.48  Aligned_cols=138  Identities=13%  Similarity=0.095  Sum_probs=99.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-------HHHhcccCCCC-ee
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-------LLILGKYNDVP-VI  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-------l~~~~~~~~~~-~~  158 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+.       +.+..+..... ..
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~  101 (648)
T PRK10535         22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL  101 (648)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence            47899999999999999999999999999999999999999999999988654332211       01111111100 00


Q ss_pred             e---------cCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         159 S---------EKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       159 ~---------~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      .         ......                             ..+..+-.||||++.+|+++|+|||+   |..+..
T Consensus       102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~  181 (648)
T PRK10535        102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE  181 (648)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence            0         000000                             01111112999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+.+.|+++.+ .+.++++++|+...+-
T Consensus       182 ~l~~ll~~l~~-~g~tilivsH~~~~~~  208 (648)
T PRK10535        182 EVMAILHQLRD-RGHTVIIVTHDPQVAA  208 (648)
T ss_pred             HHHHHHHHHHh-cCCEEEEECCCHHHHH
Confidence            99999999865 4789999999887553

>PLN03211 ABC transporter G-25; Provisional

Probab=99.74  E-value=5.3e-18  Score=170.09  Aligned_cols=136  Identities=13%  Similarity=0.119  Sum_probs=99.2

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCC------------------hhHHHH
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFR------------------AAAYEQ  145 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~------------------~~~~~q  145 (302)
                      +.+++++|+++++|++++|+||||||||||+++|+|.++|.  +|+|.++|.+...                  ....+.
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~  160 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET  160 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence            35899999999999999999999999999999999999875  8999999876421                  011122


Q ss_pred             HHHhc---------------------ccCCCCeee-----c--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         146 LLILG---------------------KYNDVPVIS-----E--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       146 l~~~~---------------------~~~~~~~~~-----~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                      +...+                     +..++.-..     .  .......++.+-.||++++.+|+++++|||+   |..
T Consensus       161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~  240 (659)
T PLN03211        161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT  240 (659)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence            21110                     011111000     0  0011222333445999999999999999997   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceee
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +...+++.|+++++ .+.|+++++|+..
T Consensus       241 ~~~~l~~~L~~l~~-~g~TvI~~sH~~~  267 (659)
T PLN03211        241 AAYRLVLTLGSLAQ-KGKTIVTSMHQPS  267 (659)
T ss_pred             HHHHHHHHHHHHHh-CCCEEEEEecCCC
Confidence            99999999999986 4889999999876

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.74  E-value=5.9e-18  Score=167.39  Aligned_cols=138  Identities=12%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cC---C-ChhHHHHHHHh-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DT---F-RAAAYEQLLIL-----  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~---~-~~~~~~ql~~~-----  149 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.        +.   + .....+.+...     
T Consensus       338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~  417 (556)
T PRK11819        338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIK  417 (556)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence            3788999999999999999999999999999999999999999987321        10   0 11222222211     


Q ss_pred             -----------cccCCCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881         150 -----------GKYNDVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK  212 (302)
Q Consensus       150 -----------~~~~~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~  212 (302)
                                 ...+++.- . . ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.   + 
T Consensus       418 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-  493 (556)
T PRK11819        418 VGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-  493 (556)
T ss_pred             ccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-
Confidence                       11112210 0 0 00112223444456999999999999999998   9999999999888762   3 


Q ss_pred             hhccccceeehhhcCC
Q psy2881         213 KIFELPYEIFLIIDGN  228 (302)
Q Consensus       213 ~i~~~~hd~~lvl~~~  228 (302)
                      +++++|||..++...+
T Consensus       494 tvi~vtHd~~~~~~~~  509 (556)
T PRK11819        494 CAVVISHDRWFLDRIA  509 (556)
T ss_pred             eEEEEECCHHHHHHhC
Confidence            7889999987655433

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.73  E-value=7.6e-18  Score=163.80  Aligned_cols=137  Identities=16%  Similarity=0.104  Sum_probs=93.1

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cCCCh---hHH-----------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DTFRA---AAY-----------  143 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~~~~---~~~-----------  143 (302)
                      +++++++|+++.+|+.+||||+||+|||||+++|+|...|++|+|.....        +....   ...           
T Consensus        16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~   95 (530)
T COG0488          16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELR   95 (530)
T ss_pred             ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHH
Confidence            46789999999999999999999999999999999999999998877542        22110   000           


Q ss_pred             ------HHHHH-------------------------------hcccCCCCee-ecCCCCCHHHHHHHHHHHHHhCCCCeE
Q psy2881         144 ------EQLLI-------------------------------LGKYNDVPVI-SEKKITDPAAIAFNAINIAQKKNTDIV  185 (302)
Q Consensus       144 ------~ql~~-------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~la~al~~~~~ll  185 (302)
                            +.+..                               .-...+++.. .......-....+-+||+++..+||+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlL  175 (530)
T COG0488          96 ELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL  175 (530)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence                  00000                               0000111111 011112223455567999999999999


Q ss_pred             EEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         186 IVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       186 llDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ||||||   |..+...+-+.|+++   .| +++++|||..+.=.
T Consensus       176 LLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~  215 (530)
T COG0488         176 LLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDN  215 (530)
T ss_pred             EEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHH
Confidence            999999   777766666666654   24 89999999987543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.73  E-value=4.1e-18  Score=185.13  Aligned_cols=138  Identities=17%  Similarity=0.137  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....                     ..+.
T Consensus       944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257       944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred             eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence            4789999999999999999999999999999999999999999999998764210                     1111


Q ss_pred             HHHhcccCC------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         146 LLILGKYND------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       146 l~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                      +..+....+                  +.-..  ........++.+-+||+|++.+|++||+|||+   |+.++..+++.
T Consensus      1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257      1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence            111110000                  00000  00000111222223999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhc
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |+++.  .+.+++++||++..+..
T Consensus      1104 L~~l~--~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257      1104 LLKYR--SGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred             HHHHh--CCCEEEEEECCHHHHHH
Confidence            99984  38899999999876644

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PLN03073 ABC transporter F family; Provisional

Probab=99.73  E-value=7.4e-18  Score=170.18  Aligned_cols=136  Identities=18%  Similarity=0.155  Sum_probs=94.5

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cCC---ChhHH-------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DTF---RAAAY-------------  143 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~~---~~~~~-------------  143 (302)
                      +++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.        +..   .....             
T Consensus       524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~  603 (718)
T PLN03073        524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  603 (718)
T ss_pred             eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCC
Confidence            789999999999999999999999999999999999999999986432        110   00000             


Q ss_pred             -HHHHHhcccCCCCe-e-e-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcc
Q psy2881         144 -EQLLILGKYNDVPV-I-S-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFE  216 (302)
Q Consensus       144 -~ql~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~  216 (302)
                       +.+..+...+++.- . . ........+..+-+||++++.+|++||+|||+   |+.+...+++.|.++    +.++++
T Consensus       604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIi  679 (718)
T PLN03073        604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLM  679 (718)
T ss_pred             HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEE
Confidence             01111112222220 0 0 11122334555566999999999999999998   888888777777654    248999


Q ss_pred             ccceeehhhcC
Q psy2881         217 LPYEIFLIIDG  227 (302)
Q Consensus       217 ~~hd~~lvl~~  227 (302)
                      +|||..++...
T Consensus       680 vSHd~~~i~~~  690 (718)
T PLN03073        680 VSHDEHLISGS  690 (718)
T ss_pred             EECCHHHHHHh
Confidence            99998775443

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.73  E-value=1.4e-17  Score=156.52  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCCeeec---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVPVISE---  160 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~~~~~---  160 (302)
                      ++++++||++.+|+.++||||+|||||||.+.|.|..+|.+|+|.++|.|+.++...   +.+.|++|...  .+..   
T Consensus       350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe--LF~GTIa  427 (580)
T COG4618         350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE--LFDGTIA  427 (580)
T ss_pred             cceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce--ecCCcHH
Confidence            567899999999999999999999999999999999999999999999998765432   11222222211  1100   


Q ss_pred             ------CCCCCHHHH------------------------------------HHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         161 ------KKITDPAAI------------------------------------AFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       161 ------~~~~~~~~~------------------------------------~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                            ....|+.++                                    .+-++|||+-.+|.+++||||.   |...
T Consensus       428 eNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G  507 (580)
T COG4618         428 ENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG  507 (580)
T ss_pred             HHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH
Confidence                  001122222                                    2223999999999999999996   8888


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceee
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ...+.+.|...+.. |.++++++|...
T Consensus       508 E~AL~~Ai~~~k~r-G~~vvviaHRPs  533 (580)
T COG4618         508 EAALAAAILAAKAR-GGTVVVIAHRPS  533 (580)
T ss_pred             HHHHHHHHHHHHHc-CCEEEEEecCHH
Confidence            88999999998764 778888888443

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=1.8e-18  Score=144.76  Aligned_cols=139  Identities=14%  Similarity=0.185  Sum_probs=93.5

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec-ccCCChhHHHHHHH-hcccCCCC---------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA-CDTFRAAAYEQLLI-LGKYNDVP---------  156 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~-~d~~~~~~~~ql~~-~~~~~~~~---------  156 (302)
                      +++++||++.+|+.-+||||||+||||++..|+|..+|+.|+|.+.| .|+.+....+-.+. .++.+..|         
T Consensus        20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~   99 (249)
T COG4674          20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR   99 (249)
T ss_pred             eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHH
Confidence            67899999999999999999999999999999999999999999998 77654332211000 11111111         


Q ss_pred             ------------eeec---CCCCCHHHHHHHH--------------------------HHHHHhCCCCeEEEcCCC---C
Q psy2881         157 ------------VISE---KKITDPAAIAFNA--------------------------INIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       157 ------------~~~~---~~~~~~~~~~~~~--------------------------la~al~~~~~llllDEP~---d  192 (302)
                                  ++..   ....+....+.+.                          |.+.++++|+++++|||.   -
T Consensus       100 eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMT  179 (249)
T COG4674         100 ENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT  179 (249)
T ss_pred             HHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCc
Confidence                        1110   0001111111111                          667788999999999995   2


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .......-+.|+.++.  ..+++++.||+.+|-..+
T Consensus       180 d~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A  213 (249)
T COG4674         180 DAETEKTAELLKSLAG--KHSILVVEHDMGFVREIA  213 (249)
T ss_pred             HHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhh
Confidence            2234456677777765  457889999999876554

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.73  E-value=9.1e-18  Score=180.68  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----------------------------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----------------------------------------  125 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----------------------------------------  125 (302)
                      ++++++||++++|+.++||||+||||||+++.|.|++.|                                         
T Consensus      1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265       1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred             ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            579999999999999999999999999999999999998                                         


Q ss_pred             -------------CCCeEEEecccCCChhH---HHHHHHhcccCC------------------------------C----
Q psy2881         126 -------------RKKSVLLAACDTFRAAA---YEQLLILGKYND------------------------------V----  155 (302)
Q Consensus       126 -------------~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~------------------------------~----  155 (302)
                                   ++|+|.++|.|+.....   +.++.+..|...                              +    
T Consensus      1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI 1341 (1466)
T PTZ00265       1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFI 1341 (1466)
T ss_pred             cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence                         58999999988643221   112222222110                              0    


Q ss_pred             ---C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         156 ---P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       156 ---~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                         |      +-.......-.++.+-+||||++++|++|||||||   |..+.+.+++.|.++.+..++|+++++|.+.
T Consensus      1342 ~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265       1342 ESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420 (1466)
T ss_pred             HhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH
Confidence               0      00000111223344445999999999999999998   9999999999998875334789999999653

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.3e-17  Score=142.98  Aligned_cols=135  Identities=14%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--hhCCCeEEEecccCCChhHHHHHHH--------hcccCCC
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--KKRKKSVLLAACDTFRAAAYEQLLI--------LGKYNDV  155 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--~~~~g~V~l~~~d~~~~~~~~ql~~--------~~~~~~~  155 (302)
                      +++++++|+++++||+.+|.||||||||||...|+|.-  ..++|+|.+.|.|+......|..+.        -.+..|+
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV   96 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV   96 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence            36789999999999999999999999999999999985  5789999999999864333222110        0000111


Q ss_pred             Ce---ee----cCCC-----CCHHHHH----------------------------HHHHHHHHhCCCCeEEEcCC--C-C
Q psy2881         156 PV---IS----EKKI-----TDPAAIA----------------------------FNAINIAQKKNTDIVIVDTS--G-R  192 (302)
Q Consensus       156 ~~---~~----~~~~-----~~~~~~~----------------------------~~~la~al~~~~~llllDEP--~-d  192 (302)
                      ..   ..    ....     .+....+                            +.-|.+.++.+|++.|||||  | |
T Consensus        97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD  176 (251)
T COG0396          97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD  176 (251)
T ss_pred             eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence            00   00    0000     0000111                            11177788999999999999  3 8


Q ss_pred             ccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..+-+.+-+.+..+... +.+++++||.-
T Consensus       177 Idalk~V~~~i~~lr~~-~~~~liITHy~  204 (251)
T COG0396         177 IDALKIVAEGINALREE-GRGVLIITHYQ  204 (251)
T ss_pred             HHHHHHHHHHHHHHhcC-CCeEEEEecHH
Confidence            77777777788887654 77888899953

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.72  E-value=1.1e-17  Score=153.43  Aligned_cols=137  Identities=12%  Similarity=0.102  Sum_probs=102.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-----  161 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-----  161 (302)
                      .+.+++||++.+|+.++|||.+|||||||-..|.++++++ |.|.+.|.++...... +++-+..++.+-|....     
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~-~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRK-EMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChh-hhhhhhhhceEEEeCCCCCCCc
Confidence            3678999999999999999999999999999999998876 9999999987643322 22222222221110000     


Q ss_pred             -------------------CCCCHH---------------------------HHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         162 -------------------KITDPA---------------------------AIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       162 -------------------~~~~~~---------------------------~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                                         +..+..                           +..+-+||||++-+|++|++||||   |
T Consensus       379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD  458 (534)
T COG4172         379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD  458 (534)
T ss_pred             ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence                               000111                           111123999999999999999998   8


Q ss_pred             ccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..-+.+++++|+++.+..+.+-+++|||+..|-
T Consensus       459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vvr  491 (534)
T COG4172         459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVR  491 (534)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH
Confidence            888999999999999999999999999977543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.72  E-value=2e-17  Score=178.09  Aligned_cols=138  Identities=13%  Similarity=0.157  Sum_probs=98.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe-cccCCChhH---HHHHHHhcccCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA-ACDTFRAAA---YEQLLILGKYND--------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~-~~d~~~~~~---~~ql~~~~~~~~--------  154 (302)
                      ++++++||++++|++++|+|||||||||++++|+|++.|++|+|.++ +.++.....   +.++.++.|...        
T Consensus       399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e  478 (1466)
T PTZ00265        399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN  478 (1466)
T ss_pred             ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence            47899999999999999999999999999999999999999999995 455432111   111111111100        


Q ss_pred             -CCe--e-------------------------------------------------------------------------
Q psy2881         155 -VPV--I-------------------------------------------------------------------------  158 (302)
Q Consensus       155 -~~~--~-------------------------------------------------------------------------  158 (302)
                       +.+  .                                                                         
T Consensus       479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l  558 (1466)
T PTZ00265        479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI  558 (1466)
T ss_pred             HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence             000  0                                                                         


Q ss_pred             ----------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         159 ----------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       159 ----------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                                      .........+..+-+||||++++|++||+|||+   |+.+...+.+.|.++.+..+.|+++++|
T Consensus       559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsH  638 (1466)
T PTZ00265        559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH  638 (1466)
T ss_pred             HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence                            000001112223334999999999999999998   9999999999999986544789999999


Q ss_pred             eeehh
Q psy2881         220 EIFLI  224 (302)
Q Consensus       220 d~~lv  224 (302)
                      +...+
T Consensus       639 rls~i  643 (1466)
T PTZ00265        639 RLSTI  643 (1466)
T ss_pred             CHHHH
Confidence            77654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.72  E-value=1.5e-17  Score=180.52  Aligned_cols=138  Identities=16%  Similarity=0.232  Sum_probs=101.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|+...+..   .++....|..          
T Consensus      1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130       1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence            589999999999999999999999999999999999999999999999987543321   1111111110          


Q ss_pred             -------------------C-----------C--CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         154 -------------------D-----------V--PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       154 -------------------~-----------~--~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                         +           .  .+-.........++.+-+||||++++|++|||||||   |..+...
T Consensus      1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130       1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred             hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence                               0           0  000000112223334445999999999999999998   9999998


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|++..  .++|+++++|....+.+
T Consensus      1413 Iq~~I~~~~--~~~TvI~IAHRL~tI~~ 1438 (1622)
T PLN03130       1413 IQKTIREEF--KSCTMLIIAHRLNTIID 1438 (1622)
T ss_pred             HHHHHHHHC--CCCEEEEEeCChHHHHh
Confidence            888888764  36899999996654444

>PLN03232 ABC transporter C family member; Provisional

Probab=99.72  E-value=1.5e-17  Score=179.95  Aligned_cols=138  Identities=16%  Similarity=0.216  Sum_probs=100.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+...+..   .++.+..|..          
T Consensus      1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232       1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence            589999999999999999999999999999999999999999999999987543321   1111111110          


Q ss_pred             -------------------C-----------CCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         154 -------------------D-----------VPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       154 -------------------~-----------~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                         +           +...  .........++.+-+||||++++|+++|+||||   |..+...
T Consensus      1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~ 1409 (1495)
T PLN03232       1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409 (1495)
T ss_pred             cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence                               0           0000  000111223333445999999999999999998   9998888


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|++..  .++|+++++|....+.+
T Consensus      1410 Iq~~L~~~~--~~~TvI~IAHRl~ti~~ 1435 (1495)
T PLN03232       1410 IQRTIREEF--KSCTMLVIAHRLNTIID 1435 (1495)
T ss_pred             HHHHHHHHc--CCCEEEEEeCCHHHHHh
Confidence            888888764  36899999996654444

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.71  E-value=5.9e-18  Score=136.90  Aligned_cols=103  Identities=21%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH------------------------
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE------------------------  144 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~------------------------  144 (302)
                      ++++||++++|++++|+||||||||||++.|+|.++|.+|+|.+++.++.......                        
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~   80 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE   80 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999999999988775411110                        


Q ss_pred             ---HHHHhcccCCCCe-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         145 ---QLLILGKYNDVPV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       145 ---ql~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                         +...+.+.++...     + .........+..+-.||+|++.+|+++|+|||+
T Consensus        81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt  136 (137)
T PF00005_consen   81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT  136 (137)
T ss_dssp             HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence               1111111111100     0 000122334445556999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.71  E-value=5e-17  Score=134.97  Aligned_cols=134  Identities=18%  Similarity=0.223  Sum_probs=94.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--HH-HHHHHhcc------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--AY-EQLLILGK------------  151 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--~~-~ql~~~~~------------  151 (302)
                      .+.+.+||++.+|+.+++||.||||||||.++|+|+++|++|+|.++|....-..  .+ +.++...+            
T Consensus        27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i  106 (267)
T COG4167          27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI  106 (267)
T ss_pred             hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence            4678899999999999999999999999999999999999999999997652100  00 00000000            


Q ss_pred             --cCCCC------------------------eeec---CC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         152 --YNDVP------------------------VISE---KK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       152 --~~~~~------------------------~~~~---~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                        .+..|                        ++..   .+  .....+..+-++|||++-+|+++|.||+-   |...+.
T Consensus       107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs  186 (267)
T COG4167         107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS  186 (267)
T ss_pred             hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence              11111                        0000   00  01112233345999999999999999994   888889


Q ss_pred             HHHHHHHHHHHHhchhhccccce
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                      ++++.+.++.+..|.+.+.++.+
T Consensus       187 Ql~NL~LeLQek~GiSyiYV~Qh  209 (267)
T COG4167         187 QLINLMLELQEKQGISYIYVTQH  209 (267)
T ss_pred             HHHHHHHHHHHHhCceEEEEech
Confidence            99999999998888777666643

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.71  E-value=1.1e-17  Score=154.86  Aligned_cols=124  Identities=15%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             EEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhccc------------------------------
Q psy2881         104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKY------------------------------  152 (302)
Q Consensus       104 lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~------------------------------  152 (302)
                      |+||||||||||+++|+|+++|++|+|.+.|.++....... .+.+..+.                              
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            58999999999999999999999999999987753221100 01111111                              


Q ss_pred             -------CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         153 -------NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       153 -------~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                             .++.-+..  .......+..+-+||||++.+|+++|+|||+   |......+.+.|+++.+..+.+++++|||
T Consensus        81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187        81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence                   11100000  0001112223334999999999999999997   99999999999999987768899999999


Q ss_pred             eehhhcC
Q psy2881         221 IFLIIDG  227 (302)
Q Consensus       221 ~~lvl~~  227 (302)
                      ...+...
T Consensus       161 ~~e~~~~  167 (325)
T TIGR01187       161 QEEAMTM  167 (325)
T ss_pred             HHHHHHh
Confidence            8766543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=5.6e-18  Score=148.89  Aligned_cols=137  Identities=13%  Similarity=0.122  Sum_probs=97.2

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhccc-----------
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKY-----------  152 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~-----------  152 (302)
                      +++|..+...+++|-|++||||||++++|+|+.+|+.|.|.++|.-.....       ....+.+..|.           
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            567777665899999999999999999999999999999999986432111       01111111111           


Q ss_pred             --------------------CCCCeeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         153 --------------------NDVPVISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       153 --------------------~~~~~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                                          +|+.-.-...  ...-.+..+-+|.||+...|+++|+|||-   |.+.+.+++..|.++.
T Consensus        96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~  175 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR  175 (352)
T ss_pred             chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence                                1110000000  00111223335999999999999999996   9999999999999999


Q ss_pred             HHhchhhccccceeehhhcC
Q psy2881         208 KVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ++.+..++.+||.+..++.-
T Consensus       176 ~e~~IPIlYVSHS~~Ev~RL  195 (352)
T COG4148         176 DEINIPILYVSHSLDEVLRL  195 (352)
T ss_pred             HhcCCCEEEEecCHHHHHhh
Confidence            99999999999987766553

>PLN03073 ABC transporter F family; Provisional

Probab=99.70  E-value=2.6e-17  Score=166.19  Aligned_cols=136  Identities=17%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh---hhCCCeEEEecccCCC--hhH---------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF---KKRKKSVLLAACDTFR--AAA---------------YEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~---~~~~g~V~l~~~d~~~--~~~---------------~~ql  146 (302)
                      ++++++||++.+|++++||||||||||||+++|+|..   .|.+|+|.+.+++...  ...               .++.
T Consensus       191 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~  270 (718)
T PLN03073        191 DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEA  270 (718)
T ss_pred             EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence            3678999999999999999999999999999999864   5788999876654210  000               0111


Q ss_pred             HHhcccCCC-----------Ceeec----------------------------------------------CCCCCHHHH
Q psy2881         147 LILGKYNDV-----------PVISE----------------------------------------------KKITDPAAI  169 (302)
Q Consensus       147 ~~~~~~~~~-----------~~~~~----------------------------------------------~~~~~~~~~  169 (302)
                      ..+.+....           +....                                              .......+.
T Consensus       271 ~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k  350 (718)
T PLN03073        271 QLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWR  350 (718)
T ss_pred             HHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHH
Confidence            111111000           00000                                              000111222


Q ss_pred             HHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         170 AFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       170 ~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+-+||++++.+|+++|+|||+   |+.+...+.+.|+++    +.++++++||..++..
T Consensus       351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~  406 (718)
T PLN03073        351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNT  406 (718)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHH
Confidence            2334999999999999999998   888888888888775    5789999999887655

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.70  E-value=3.9e-17  Score=177.11  Aligned_cols=138  Identities=12%  Similarity=0.123  Sum_probs=100.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++|+|+|||||||+++.|.+++.|++|+|.++|.|+...+..   .++....|..          
T Consensus      1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957      1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence            589999999999999999999999999999999999999999999999987543321   1111111110          


Q ss_pred             ------------------------------CCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         154 ------------------------------DVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       154 ------------------------------~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                                    |+.....  .......++.+-+||||++++|++||+||||   |..+...
T Consensus      1380 Ldp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~ 1459 (1522)
T TIGR00957      1380 LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459 (1522)
T ss_pred             cCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence                                          0000000  0112223344445999999999999999998   9998888


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+.|++..  .++|+++++|....+.+
T Consensus      1460 Iq~~l~~~~--~~~TvI~IAHRl~ti~~ 1485 (1522)
T TIGR00957      1460 IQSTIRTQF--EDCTVLTIAHRLNTIMD 1485 (1522)
T ss_pred             HHHHHHHHc--CCCEEEEEecCHHHHHh
Confidence            888887764  36899999997655443

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.70  E-value=4.4e-17  Score=163.95  Aligned_cols=133  Identities=14%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--------ccCC--ChhHHHHHHH--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--------CDTF--RAAAYEQLLI--------  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--------~d~~--~~~~~~ql~~--------  148 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+        ++++  .....+++..        
T Consensus       466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~  545 (659)
T TIGR00954       466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK  545 (659)
T ss_pred             eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhh
Confidence            478899999999999999999999999999999999999999886643        2211  1122233221        


Q ss_pred             -----------hcccCCCCeee-c----------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         149 -----------LGKYNDVPVIS-E----------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       149 -----------~~~~~~~~~~~-~----------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                                 ..+..++.-+. .          .......+..+-+||||++++|+++|+|||+   |+.+...+.+.+
T Consensus       546 ~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l  625 (659)
T TIGR00954       546 RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC  625 (659)
T ss_pred             ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence                       11112221100 0          0112334555567999999999999999998   888777777766


Q ss_pred             HHHHHHhchhhccccceeeh
Q psy2881         204 KKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~l  223 (302)
                      ++    .+.++++++|+...
T Consensus       626 ~~----~~~tvI~isH~~~~  641 (659)
T TIGR00954       626 RE----FGITLFSVSHRKSL  641 (659)
T ss_pred             HH----cCCEEEEEeCchHH
Confidence            54    37889999998765

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.70  E-value=6.9e-17  Score=148.33  Aligned_cols=142  Identities=16%  Similarity=0.190  Sum_probs=104.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK  161 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~  161 (302)
                      .+.+++||++.+||.+++||.+|||||-+...+.++++.     -+|+|.+.|.|+-..+..+.-..-+++.+.-|....
T Consensus        24 ~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPM  103 (534)
T COG4172          24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM  103 (534)
T ss_pred             EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccc
Confidence            467899999999999999999999999999999999974     268999999997543322111111111111000000


Q ss_pred             CCCCH----------------------------------------------------HHHHHHHHHHHHhCCCCeEEEcC
Q psy2881         162 KITDP----------------------------------------------------AAIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       162 ~~~~~----------------------------------------------------~~~~~~~la~al~~~~~llllDE  189 (302)
                      ...++                                                    .+..+-.||+|++.+|+++|.||
T Consensus       104 tSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADE  183 (534)
T COG4172         104 TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADE  183 (534)
T ss_pred             cccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecC
Confidence            00000                                                    11112239999999999999999


Q ss_pred             CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ||   |..-+.+++++|+++.+..|..++++|||+..|-...
T Consensus       184 PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~A  225 (534)
T COG4172         184 PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFA  225 (534)
T ss_pred             CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhh
Confidence            98   9999999999999999999999999999998776544

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.69  E-value=1.4e-16  Score=129.90  Aligned_cols=136  Identities=11%  Similarity=0.074  Sum_probs=98.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc--CCChhHHHHHHHhcccCCCCee-------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD--TFRAAAYEQLLILGKYNDVPVI-------  158 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d--~~~~~~~~ql~~~~~~~~~~~~-------  158 (302)
                      ++.+++|+-+.|+.+.++||+|+|||||++.|.-+..|.+|...+.+..  ..+....+++..+.+..|.-|.       
T Consensus        17 ~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph   96 (242)
T COG4161          17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH   96 (242)
T ss_pred             heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence            5678999999999999999999999999999999999999999987753  2233333344333333221110       


Q ss_pred             -------------ecCCCCC-H--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         159 -------------SEKKITD-P--------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       159 -------------~~~~~~~-~--------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                   ...-..+ .                          ....+-+||||++.+|+++++|||+   |+.-
T Consensus        97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei  176 (242)
T COG4161          97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI  176 (242)
T ss_pred             hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence                         0000000 0                          0111123999999999999999998   9998


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ..++.+.++++.. .|.+-++++|++..+
T Consensus       177 taqvv~iikel~~-tgitqvivthev~va  204 (242)
T COG4161         177 TAQIVSIIKELAE-TGITQVIVTHEVEVA  204 (242)
T ss_pred             HHHHHHHHHHHHh-cCceEEEEEeehhHH
Confidence            8999999999975 488889999987764

>PTZ00243 ABC transporter; Provisional

Probab=99.68  E-value=7.2e-17  Score=174.94  Aligned_cols=137  Identities=10%  Similarity=0.091  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++|+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...+..   .++.+..|...         
T Consensus      1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243       1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred             ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence            489999999999999999999999999999999999999999999999987643321   11111111100         


Q ss_pred             CC---------------------------------eeecCCCCCHHHHHHHHHHHHHhCC-CCeEEEcCCC---CccchH
Q psy2881         155 VP---------------------------------VISEKKITDPAAIAFNAINIAQKKN-TDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~---------------------------------~~~~~~~~~~~~~~~~~la~al~~~-~~llllDEP~---d~~~~~  197 (302)
                      +.                                 +-.........++.+-+||||++++ |++|||||||   |..+..
T Consensus      1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~ 1483 (1560)
T PTZ00243       1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483 (1560)
T ss_pred             hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHH
Confidence            00                                 0000011122333344599999995 8999999998   888888


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+.+.|++..  .++|+++++|.+..+.
T Consensus      1484 ~Iq~~L~~~~--~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243       1484 QIQATVMSAF--SAYTVITIAHRLHTVA 1509 (1560)
T ss_pred             HHHHHHHHHC--CCCEEEEEeccHHHHH
Confidence            8888888764  3679999999765443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.68  E-value=9.2e-17  Score=156.29  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=93.4

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc--------cCC----ChhHHHHHHH-----
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC--------DTF----RAAAYEQLLI-----  148 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~--------d~~----~~~~~~ql~~-----  148 (302)
                      +++++++||.+.+|+.++|+||||+|||||++.|+|...|.+|+|.+...        +..    .....+.+..     
T Consensus       335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~  414 (530)
T COG0488         335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG  414 (530)
T ss_pred             ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence            35788999999999999999999999999999999999999998876332        110    0011222222     


Q ss_pred             -------hcccCCCCeeec---CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881         149 -------LGKYNDVPVISE---KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF  215 (302)
Q Consensus       149 -------~~~~~~~~~~~~---~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~  215 (302)
                             +..+++++.-..   -....-.+..+-.+|+.+..+|.+|||||||   |..+...+.+.|..+    ..+++
T Consensus       415 ~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl  490 (530)
T COG0488         415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVL  490 (530)
T ss_pred             cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEE
Confidence                   111222211000   0011223444556899999999999999999   777666666666555    56889


Q ss_pred             cccceeehhhcC
Q psy2881         216 ELPYEIFLIIDG  227 (302)
Q Consensus       216 ~~~hd~~lvl~~  227 (302)
                      ++|||..++-.-
T Consensus       491 ~VSHDr~Fl~~v  502 (530)
T COG0488         491 LVSHDRYFLDRV  502 (530)
T ss_pred             EEeCCHHHHHhh
Confidence            999999886443

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.68  E-value=1e-16  Score=160.22  Aligned_cols=136  Identities=18%  Similarity=0.069  Sum_probs=98.6

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCCh-------------------hHH
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRA-------------------AAY  143 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~-------------------~~~  143 (302)
                      +++++|+|+++++|++++|+||||||||||++.|+|..++.   +|+|.++|.+....                   ...
T Consensus        38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~  117 (617)
T TIGR00955        38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR  117 (617)
T ss_pred             cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence            45899999999999999999999999999999999998774   69999999764210                   111


Q ss_pred             HHHHH---------------------hcccCCCCee----ecC----CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         144 EQLLI---------------------LGKYNDVPVI----SEK----KITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       144 ~ql~~---------------------~~~~~~~~~~----~~~----~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                      |.+..                     +-+.+++.-.    ...    .+....++.+-.||++++.+|+++++|||+   
T Consensus       118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL  197 (617)
T TIGR00955       118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL  197 (617)
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence            11111                     1111111100    000    011222334445999999999999999997   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      |+.+...+++.|+++++. +.++++++|+..
T Consensus       198 D~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~  227 (617)
T TIGR00955       198 DSFMAYSVVQVLKGLAQK-GKTIICTIHQPS  227 (617)
T ss_pred             hHHHHHHHHHHHHHHHhC-CCEEEEEeCCCC
Confidence            999999999999999864 889999999864

>KOG0055|consensus

Probab=99.67  E-value=2.4e-16  Score=161.95  Aligned_cols=135  Identities=15%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~---------  154 (302)
                      ++++|+||++++|+.++||||+||||||.+.+|-++|.|.+|.|.++|.|+.....   ++|+..+.|..-         
T Consensus      1004 ~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrEN 1083 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIREN 1083 (1228)
T ss_pred             hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHH
Confidence            47899999999999999999999999999999999999999999999999764322   222222222210         


Q ss_pred             CCe----------------------e------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 VPV----------------------I------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ~~~----------------------~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +.+                      +            .......-.++.+-+||||++++|++|||||+|   |.++..
T Consensus      1084 I~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1084 IAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred             HhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence            000                      0            000001112233345999999999999999998   988888


Q ss_pred             HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+.+.|.+...  ++|.+++.|.+-.
T Consensus      1164 vVQeALd~a~~--gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1164 VVQEALDRAME--GRTTIVIAHRLST 1187 (1228)
T ss_pred             HHHHHHHHhhc--CCcEEEEecchhh
Confidence            88888887753  6788888885443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.66  E-value=2.2e-16  Score=170.89  Aligned_cols=138  Identities=9%  Similarity=0.124  Sum_probs=99.1

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC---------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN---------  153 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~---------  153 (302)
                      +++++|+||++++|+.++|+|+||||||||++.|+|++. .+|+|.++|.|+...+..   .++.+..|..         
T Consensus      1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271      1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred             cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence            358999999999999999999999999999999999996 789999999987543321   1111111110         


Q ss_pred             --------------------C-----------C--CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 --------------------D-----------V--PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 --------------------~-----------~--~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                          +           +  .+-.........++.+-+||||++++|++|||||||   |..+..
T Consensus      1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271      1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred             HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence                                0           0  000000112223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.|++..  .++|+++++|.+..+.+
T Consensus      1391 ~I~~~L~~~~--~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271      1391 IIRKTLKQSF--SNCTVILSEHRVEALLE 1417 (1490)
T ss_pred             HHHHHHHHHc--CCCEEEEEecCHHHHHh
Confidence            9988888764  36899999996544433

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=4e-16  Score=128.17  Aligned_cols=134  Identities=10%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----ChhHHH-------HHHHhcccCC-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----RAAAYE-------QLLILGKYND-  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----~~~~~~-------ql~~~~~~~~-  154 (302)
                      ++++++||+++.||++++=||+|+||||++++|-+-|.|++|+|.+.-.+-.    ....++       .+.+..|.+. 
T Consensus        25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv  104 (235)
T COG4778          25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV  104 (235)
T ss_pred             eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence            6889999999999999999999999999999999999999999998654321    111111       1111111110 


Q ss_pred             CCe-----------eecCCCCCH----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---C
Q psy2881         155 VPV-----------ISEKKITDP----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---R  192 (302)
Q Consensus       155 ~~~-----------~~~~~~~~~----------------------------~~~~~~~la~al~~~~~llllDEP~---d  192 (302)
                      +|-           .......+.                            .+..+-.|||.++.++.++|+||||   |
T Consensus       105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD  184 (235)
T COG4778         105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD  184 (235)
T ss_pred             ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence            010           000000000                            0111112999999999999999998   8


Q ss_pred             ccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         193 LSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       193 ~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..++..+.+++.+-+ ..|..++-+-||-
T Consensus       185 a~Nr~vVveli~e~K-a~GaAlvGIFHDe  212 (235)
T COG4778         185 ATNRAVVVELIREAK-ARGAALVGIFHDE  212 (235)
T ss_pred             ccchHHHHHHHHHHH-hcCceEEEeeccH
Confidence            888888888888754 4577777777863

>KOG0056|consensus

Probab=99.66  E-value=2.5e-16  Score=147.47  Aligned_cols=133  Identities=14%  Similarity=0.216  Sum_probs=94.4

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhcccC---------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKYN---------  153 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~~---------  153 (302)
                      +++++|+||++.+|+.+++|||+|+||||+++.|-+++.-++|+|.++|+|+....   .+.++...+|..         
T Consensus       551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~y  630 (790)
T KOG0056|consen  551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILY  630 (790)
T ss_pred             CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeee
Confidence            36789999999999999999999999999999999999999999999999974221   111222222210         


Q ss_pred             CCCeeecCCCCC-----------------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         154 DVPVISEKKITD-----------------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       154 ~~~~~~~~~~~~-----------------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                      ++.+ ......+                                   -.++.+-+|||++...|.++++||++   |.++
T Consensus       631 NIry-ak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~t  709 (790)
T KOG0056|consen  631 NIRY-AKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNT  709 (790)
T ss_pred             heee-cCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCcc
Confidence            0000 0000000                                   01112224999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhcccccee
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ...+...|.+++.  ++|-+++.|..
T Consensus       710 ER~IQaaL~rlca--~RTtIVvAHRL  733 (790)
T KOG0056|consen  710 ERAIQAALARLCA--NRTTIVVAHRL  733 (790)
T ss_pred             HHHHHHHHHHHhc--CCceEEEeeee
Confidence            9999999999975  45555566633

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.66  E-value=2.5e-16  Score=169.31  Aligned_cols=136  Identities=13%  Similarity=0.043  Sum_probs=98.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh---hCCCeEEEecccCCC-----h-------------hHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK---KRKKSVLLAACDTFR-----A-------------AAYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~---~~~g~V~l~~~d~~~-----~-------------~~~~q  145 (302)
                      .+++++|+++++|++++|+||||||||||++.|+|+.+   +++|+|.++|.+...     .             ..++.
T Consensus       777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~  856 (1394)
T TIGR00956       777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES  856 (1394)
T ss_pred             EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence            58999999999999999999999999999999999987   678999999876521     0             11122


Q ss_pred             HHHhc---------------------ccCCCCee----ec--CCCCCHHHHHHHHHHHHHhCCCC-eEEEcCCC---Ccc
Q psy2881         146 LLILG---------------------KYNDVPVI----SE--KKITDPAAIAFNAINIAQKKNTD-IVIVDTSG---RLS  194 (302)
Q Consensus       146 l~~~~---------------------~~~~~~~~----~~--~~~~~~~~~~~~~la~al~~~~~-llllDEP~---d~~  194 (302)
                      +...+                     +..++.-.    ..  ..+....++.+-.||++++.+|+ ++|+|||+   |..
T Consensus       857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~  936 (1394)
T TIGR00956       857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ  936 (1394)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence            21110                     00111000    00  00122233444459999999997 99999998   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +...+++.|+++++ .|.++++++|+...
T Consensus       937 ~~~~i~~~L~~la~-~g~tvI~t~H~~~~  964 (1394)
T TIGR00956       937 TAWSICKLMRKLAD-HGQAILCTIHQPSA  964 (1394)
T ss_pred             HHHHHHHHHHHHHH-cCCEEEEEecCCCH
Confidence            99999999999975 48899999998764

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.63  E-value=8.2e-16  Score=135.29  Aligned_cols=56  Identities=7%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         167 AAIAFNAINIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       167 ~~~~~~~la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+..+-.||++++.+|  +++|+|||+   |+.....+++.|+++++ .+.++++++||...
T Consensus       141 G~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~  201 (226)
T cd03270         141 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDT  201 (226)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHH
Confidence            4445556999999998  599999997   99999999999999865 48899999998754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.63  E-value=6.5e-16  Score=166.04  Aligned_cols=135  Identities=13%  Similarity=0.125  Sum_probs=98.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCCh-------------------hHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRA-------------------AAYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~-------------------~~~~q  145 (302)
                      .+++|+|+.+++|++++|+||||||||||+++|+|..++  .+|+|.++|.+....                   ...|.
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~  973 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES  973 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence            578999999999999999999999999999999998763  579999988654211                   11122


Q ss_pred             HHHhc---------------------ccCCCCeee-cC------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         146 LLILG---------------------KYNDVPVIS-EK------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       146 l~~~~---------------------~~~~~~~~~-~~------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                      +...+                     +..++.-.. ..      ......++.+-.||++++.+|+++++|||+   |..
T Consensus       974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140        974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence            21110                     001110000 00      112233444455999999999999999998   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceee
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +...+++.|+++++. |.++++++|+..
T Consensus      1054 ~a~~v~~~L~~l~~~-g~tVI~t~Hq~~ 1080 (1470)
T PLN03140       1054 AAAIVMRTVRNTVDT-GRTVVCTIHQPS 1080 (1470)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            999999999999765 889999999875

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.63  E-value=9.9e-16  Score=123.49  Aligned_cols=138  Identities=14%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChhH-HHHHHHhcccC------CCC-
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAA-YEQLLILGKYN------DVP-  156 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~~-~~ql~~~~~~~------~~~-  156 (302)
                      .+.++|+++.+|||+.+.||+|||||||+.-++|.+.++   .|++.++++++.-..+ ..|+..+.+..      .+. 
T Consensus        17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~   96 (213)
T COG4136          17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQ   96 (213)
T ss_pred             EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccccc
Confidence            466899999999999999999999999999999999864   6999999988754333 23333222210      000 


Q ss_pred             -eeecCC----C---------------------CCH-----HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         157 -VISEKK----I---------------------TDP-----AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       157 -~~~~~~----~---------------------~~~-----~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                       ......    +                     .++     .+.++-++.|+++..|+.+++|||.   |...+.+..+.
T Consensus        97 Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~w  176 (213)
T COG4136          97 NLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW  176 (213)
T ss_pred             ceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHH
Confidence             000000    0                     011     1222334779999999999999997   55555555555


Q ss_pred             HHHHHHHhchhhccccceeehhh
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ...-.+..+...+.+|||..-|-
T Consensus       177 VFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         177 VFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             HHHHHHhcCCCeEEEecccccCC
Confidence            55555566778889999977654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.62  E-value=2.2e-16  Score=136.11  Aligned_cols=131  Identities=16%  Similarity=0.196  Sum_probs=83.3

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC---------CeEEEecccCCChhHHHHHHHhcccCCCCe---
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK---------KSVLLAACDTFRAAAYEQLLILGKYNDVPV---  157 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~---------g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~---  157 (302)
                      +++++++.+| +++|+|||||||||+++.|++++.+..         +.+.+.+.+........++....+.....+   
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~   92 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII   92 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence            5678999999 999999999999999999999986542         245555544321000000001111110000   


Q ss_pred             --------------e-ecCCCCCHHHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881         158 --------------I-SEKKITDPAAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF  215 (302)
Q Consensus       158 --------------~-~~~~~~~~~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~  215 (302)
                                    . .........+..+-+++++++    .+|+++|+|||+   |+.....+++.|+++.+  +.+++
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiI  170 (197)
T cd03278          93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFI  170 (197)
T ss_pred             ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEE
Confidence                          0 000011122333445778775    567999999997   88889999999998864  56889


Q ss_pred             cccceeeh
Q psy2881         216 ELPYEIFL  223 (302)
Q Consensus       216 ~~~hd~~l  223 (302)
                      ++||+...
T Consensus       171 iitH~~~~  178 (197)
T cd03278         171 VITHRKGT  178 (197)
T ss_pred             EEECCHHH
Confidence            99998764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0059|consensus

Probab=99.61  E-value=1.7e-15  Score=156.69  Aligned_cols=137  Identities=19%  Similarity=0.177  Sum_probs=101.5

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-----------------------hhHHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-----------------------AAAYE  144 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-----------------------~~~~~  144 (302)
                      +.+++++.+++||+.++.|||||||||++++|.|..+|++|++.+.|.|...                       ...+|
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE  659 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE  659 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence            5689999999999999999999999999999999999999999998887642                       12334


Q ss_pred             HHHHhcccCCCCeeecCC----------------C----CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH
Q psy2881         145 QLLILGKYNDVPVISEKK----------------I----TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR  201 (302)
Q Consensus       145 ql~~~~~~~~~~~~~~~~----------------~----~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~  201 (302)
                      .+..|+...|++......                .    ..-..+.+-.+|.|++.+|++++||||+   ||..+..+++
T Consensus       660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~  739 (885)
T KOG0059|consen  660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD  739 (885)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence            455555544433100000                0    0000011122788999999999999996   9999999999


Q ss_pred             HHHHHHHHhchhhccccceeehhh
Q psy2881         202 ELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       202 ~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+.++.+. ++.+++.||.+...-
T Consensus       740 ii~~~~k~-g~aiiLTSHsMeE~E  762 (885)
T KOG0059|consen  740 IIARLRKN-GKAIILTSHSMEEAE  762 (885)
T ss_pred             HHHHHHhc-CCEEEEEcCCHHHHH
Confidence            99999875 448999999776543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.61  E-value=1.6e-15  Score=164.15  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHh--------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLIL--------  149 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~--------  149 (302)
                      +++++|+||++++|++++|+||||||||||++.|+|.++|.+|+|.+.|.      +.  +.....+.+...        
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~  518 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY  518 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence            35799999999999999999999999999999999999999999987652      21  111222222100        


Q ss_pred             ---cccCC-------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHH
Q psy2881         150 ---GKYND-------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKV  209 (302)
Q Consensus       150 ---~~~~~-------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~  209 (302)
                         .+..+       .+      +-.........++.+-+||||+..+|+++|+|||+   |......+++. +..+.  
T Consensus       519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--  596 (1490)
T TIGR01271       519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--  596 (1490)
T ss_pred             HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--
Confidence               00000       00      00011122344566667999999999999999997   99999988875 55554  


Q ss_pred             hchhhccccceeehhh
Q psy2881         210 IEKKIFELPYEIFLII  225 (302)
Q Consensus       210 ~~~~i~~~~hd~~lvl  225 (302)
                      .++|++++||++..+-
T Consensus       597 ~~~tvilvtH~~~~~~  612 (1490)
T TIGR01271       597 SNKTRILVTSKLEHLK  612 (1490)
T ss_pred             cCCeEEEEeCChHHHH
Confidence            3789999999986654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.61  E-value=2.2e-15  Score=124.35  Aligned_cols=138  Identities=18%  Similarity=0.170  Sum_probs=91.2

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCC----eeecC
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVP----VISEK  161 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~----~~~~~  161 (302)
                      +-++|..+..|+++-+|||||+|||||++.+||+. |-+|+|.+.|.+....+..+   +-.++++....+    ++...
T Consensus        15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL   93 (248)
T COG4138          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL   93 (248)
T ss_pred             ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence            44678888999999999999999999999999986 56899999999987554432   334445543322    22211


Q ss_pred             CCCCHHHHHHHH------------------------------HHHHH-------hCCCCeEEEcCCC---CccchHHHHH
Q psy2881         162 KITDPAAIAFNA------------------------------INIAQ-------KKNTDIVIVDTSG---RLSTQSHLMR  201 (302)
Q Consensus       162 ~~~~~~~~~~~~------------------------------la~al-------~~~~~llllDEP~---d~~~~~~l~~  201 (302)
                      .-..+.+.....                              +|...       .-..+++|+|||-   |...+..+-.
T Consensus        94 ~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr  173 (248)
T COG4138          94 TLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR  173 (248)
T ss_pred             hhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence            111111111110                              11111       1134699999995   7666666667


Q ss_pred             HHHHHHHHhchhhccccceeehhhcCC
Q psy2881         202 ELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       202 ~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .|.+++. .|.++++++||..-.+...
T Consensus       174 ll~~~c~-~G~~vims~HDLNhTLrhA  199 (248)
T COG4138         174 LLSALCQ-QGLAIVMSSHDLNHTLRHA  199 (248)
T ss_pred             HHHHHHh-CCcEEEEeccchhhHHHHH
Confidence            7777775 4899999999998766543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.60  E-value=9e-16  Score=165.05  Aligned_cols=135  Identities=13%  Similarity=0.061  Sum_probs=96.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh----hhCCCeEEEecccCCCh---------------------h
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF----KKRKKSVLLAACDTFRA---------------------A  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~----~~~~g~V~l~~~d~~~~---------------------~  141 (302)
                      .+++|+|+.+++|++++|+||||||||||+++|+|..    +|.+|+|.++|.+....                     .
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            5899999999999999999999999999999999986    46899999998754210                     0


Q ss_pred             HHHHHHHh--------------------------cccCCCCeeec-------CCCCCHHHHHHHHHHHHHhCCCCeEEEc
Q psy2881         142 AYEQLLIL--------------------------GKYNDVPVISE-------KKITDPAAIAFNAINIAQKKNTDIVIVD  188 (302)
Q Consensus       142 ~~~ql~~~--------------------------~~~~~~~~~~~-------~~~~~~~~~~~~~la~al~~~~~llllD  188 (302)
                      ..+.+..-                          .+..++.-...       ..+..-.++.+-.||++++.+|+++++|
T Consensus       155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD  234 (1394)
T TIGR00956       155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD  234 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence            11111100                          00011100000       0000011122223999999999999999


Q ss_pred             CCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         189 TSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       189 EP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ||+   |+.+...+++.|+++++..+.++++++|+.
T Consensus       235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~  270 (1394)
T TIGR00956       235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQC  270 (1394)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence            997   999999999999999877688999999985

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.60  E-value=3.9e-15  Score=136.50  Aligned_cols=135  Identities=15%  Similarity=0.156  Sum_probs=93.7

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH--HH---------------------
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY--EQ---------------------  145 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~--~q---------------------  145 (302)
                      +.+||+++++||++.|+|.|||||||+++.|.|+++|++|+|.++|.++.....-  .+                     
T Consensus       339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~  418 (546)
T COG4615         339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGK  418 (546)
T ss_pred             ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccC
Confidence            4578999999999999999999999999999999999999999999876421110  00                     


Q ss_pred             -----HHHhcccCCCC----eee---cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881         146 -----LLILGKYNDVP----VIS---EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI  210 (302)
Q Consensus       146 -----l~~~~~~~~~~----~~~---~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~  210 (302)
                           +..|-++..+.    +..   ........++-+-++--|+..+.+++++||=.   ||.-+..+...+.-..+..
T Consensus       419 as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q  498 (546)
T COG4615         419 ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ  498 (546)
T ss_pred             CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh
Confidence                 11111111000    000   00000011111222445788999999999975   8888888888888877888


Q ss_pred             chhhccccceeeh
Q psy2881         211 EKKIFELPYEIFL  223 (302)
Q Consensus       211 ~~~i~~~~hd~~l  223 (302)
                      |+|++.+|||-..
T Consensus       499 GKTI~aIsHDd~Y  511 (546)
T COG4615         499 GKTIFAISHDDHY  511 (546)
T ss_pred             CCeEEEEecCchh
Confidence            9999999997554

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.60  E-value=2.4e-15  Score=163.23  Aligned_cols=140  Identities=15%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec------ccC--CChhHHHHHHH----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA------CDT--FRAAAYEQLLI----------  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~------~d~--~~~~~~~ql~~----------  148 (302)
                      ++++++||++++|++++|+||||||||||++.|+|.++|.+|+|.+.|      ++.  +.....+.+..          
T Consensus       652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~  731 (1522)
T TIGR00957       652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQ  731 (1522)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHH
Confidence            478999999999999999999999999999999999999999987765      221  11111111110          


Q ss_pred             ----hcc---cCC-CC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH-Hh
Q psy2881         149 ----LGK---YND-VP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK-VI  210 (302)
Q Consensus       149 ----~~~---~~~-~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~-~~  210 (302)
                          ...   ..+ .|     .. .......-.++.+-+||||+..+|+++|+|||+   |.++...+++.+.+... ..
T Consensus       732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~  811 (1522)
T TIGR00957       732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK  811 (1522)
T ss_pred             HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc
Confidence                000   000 00     00 111122335566667999999999999999998   99999999888865321 23


Q ss_pred             chhhccccceeehhhc
Q psy2881         211 EKKIFELPYEIFLIID  226 (302)
Q Consensus       211 ~~~i~~~~hd~~lvl~  226 (302)
                      ++|++++||+...+..
T Consensus       812 ~~tvIlvTH~~~~l~~  827 (1522)
T TIGR00957       812 NKTRILVTHGISYLPQ  827 (1522)
T ss_pred             CCEEEEEeCChhhhhh
Confidence            6799999998765543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.59  E-value=5.6e-16  Score=166.56  Aligned_cols=135  Identities=13%  Similarity=0.062  Sum_probs=96.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCCh-------------------hHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRA-------------------AAYE  144 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~-------------------~~~~  144 (302)
                      .+++|+|+.+++|++++|+||||||||||+++|+|.++|+   +|+|.++|.+....                   ...|
T Consensus       179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E  258 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE  258 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence            4799999999999999999999999999999999999987   89999998764211                   1122


Q ss_pred             HHHHhcccCCCCee-------ecCC----------------------------------------------------CCC
Q psy2881         145 QLLILGKYNDVPVI-------SEKK----------------------------------------------------ITD  165 (302)
Q Consensus       145 ql~~~~~~~~~~~~-------~~~~----------------------------------------------------~~~  165 (302)
                      .+...+...+....       ....                                                    +..
T Consensus       259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS  338 (1470)
T PLN03140        259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS  338 (1470)
T ss_pred             HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence            22221110000000       0000                                                    000


Q ss_pred             HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         166 PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       166 ~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      -.++.+-.||++++.+|+++++|||+   |..+...+++.|+++++..+.|+++++|+.
T Consensus       339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp  397 (1470)
T PLN03140        339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP  397 (1470)
T ss_pred             cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence            00011112889999999999999997   999999999999999877788999999975

>KOG0061|consensus

Probab=99.57  E-value=4.5e-15  Score=147.77  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh---CCCeEEEecccCCC-------------------hhH
Q psy2881          85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK---RKKSVLLAACDTFR-------------------AAA  142 (302)
Q Consensus        85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~---~~g~V~l~~~d~~~-------------------~~~  142 (302)
                      .+.++++++..+++|++.||+||+|||||||+++|||....   .+|+|.++|....+                   ...
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            46789999999999999999999999999999999999874   57999999943221                   112


Q ss_pred             HHHHHHhcc---------------------cCCCC-----eeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---
Q psy2881         143 YEQLLILGK---------------------YNDVP-----VISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---  191 (302)
Q Consensus       143 ~~ql~~~~~---------------------~~~~~-----~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---  191 (302)
                      .|.+.+.+.                     .+++.     .+...  .+..-.++.+-.+|.-++.+|.++++||||   
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL  201 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL  201 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence            222222211                     11111     00000  001111223334888899999999999998   


Q ss_pred             CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         192 RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       192 d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      |..+...+++.|+++++. |++|+++-|..
T Consensus       202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQP  230 (613)
T KOG0061|consen  202 DSFSALQVVQLLKRLARS-GRTVICTIHQP  230 (613)
T ss_pred             chhhHHHHHHHHHHHHhC-CCEEEEEEeCC
Confidence            999999999999999998 99999888865

>KOG0054|consensus

Probab=99.57  E-value=1e-14  Score=153.09  Aligned_cols=141  Identities=15%  Similarity=0.175  Sum_probs=102.2

Q ss_pred             hhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec----
Q psy2881          85 LKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE----  160 (302)
Q Consensus        85 l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~----  160 (302)
                      +.++++++||++++||.+||||.+||||||++..|-++..|.+|+|.++|.|+...+-.+--....-..+-|+.+.    
T Consensus      1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred             CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence            4568999999999999999999999999999999999999999999999999876554321111111111111111    


Q ss_pred             -----------------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         161 -----------------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       161 -----------------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                               ..+....++..-.+|||++++.++++|||+|   |+.++
T Consensus      1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred             cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence                                                     1111112222223999999999999999998   99998


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ..+.+.|++--  .++|++.+.|.+.-|+|+
T Consensus      1312 ~lIQ~tIR~~F--~dcTVltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1312 ALIQKTIREEF--KDCTVLTIAHRLNTVMDS 1340 (1381)
T ss_pred             HHHHHHHHHHh--cCCeEEEEeeccchhhhc
Confidence            88888887654  367888888866655554

>PLN03232 ABC transporter C family member; Provisional

Probab=99.56  E-value=9.2e-15  Score=158.55  Aligned_cols=136  Identities=17%  Similarity=0.138  Sum_probs=92.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe-------EEEecccCC--ChhHHHHHH----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS-------VLLAACDTF--RAAAYEQLL----------  147 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~-------V~l~~~d~~--~~~~~~ql~----------  147 (302)
                      ++++|+||++++|+.++|+||+|||||||++.|+|.++|.+|.       |.+..++++  ....++.+.          
T Consensus       631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~  710 (1495)
T PLN03232        631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERY  710 (1495)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHH
Confidence            4789999999999999999999999999999999999998764       444445432  111122211          


Q ss_pred             -HhcccCC-------CC-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHH
Q psy2881         148 -ILGKYND-------VP-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKV  209 (302)
Q Consensus       148 -~~~~~~~-------~~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~  209 (302)
                       ...+..+       .|     .+ .......-.++.+-+||||+.++|+++|+|||+   |.++...+++.+ ....  
T Consensus       711 ~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--  788 (1495)
T PLN03232        711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--  788 (1495)
T ss_pred             HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--
Confidence             0000000       00     01 111122345666777999999999999999998   888888776654 3332  


Q ss_pred             hchhhccccceeehh
Q psy2881         210 IEKKIFELPYEIFLI  224 (302)
Q Consensus       210 ~~~~i~~~~hd~~lv  224 (302)
                      .++|++++||+...+
T Consensus       789 ~~kT~IlvTH~~~~l  803 (1495)
T PLN03232        789 KGKTRVLVTNQLHFL  803 (1495)
T ss_pred             cCCEEEEEECChhhH
Confidence            368999999976543

>PTZ00243 ABC transporter; Provisional

Probab=99.56  E-value=9.2e-15  Score=158.69  Aligned_cols=138  Identities=13%  Similarity=0.105  Sum_probs=93.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec------ccC--CChhHHHHHHHhc--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA------CDT--FRAAAYEQLLILG--------  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~------~d~--~~~~~~~ql~~~~--------  150 (302)
                      ++++++||++++|++++|+||||||||||++.|+|.++|++|+|.+.+      ++.  +.....+.+....        
T Consensus       674 ~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~  753 (1560)
T PTZ00243        674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLA  753 (1560)
T ss_pred             eeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHH
Confidence            478999999999999999999999999999999999999999876532      221  1111112211100        


Q ss_pred             ------------ccC--CCCe--eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhc
Q psy2881         151 ------------KYN--DVPV--ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIE  211 (302)
Q Consensus       151 ------------~~~--~~~~--~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~  211 (302)
                                  +.+  +...  -.......-.++.+-+||||+..+|+++|+|||+   |++....+++.+.... ..+
T Consensus       754 ~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~  832 (1560)
T PTZ00243        754 DAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA-LAG  832 (1560)
T ss_pred             HHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCC
Confidence                        000  1100  0111122334555667999999999999999997   8877777776543221 137


Q ss_pred             hhhccccceeehhh
Q psy2881         212 KKIFELPYEIFLII  225 (302)
Q Consensus       212 ~~i~~~~hd~~lvl  225 (302)
                      ++++++||+..++-
T Consensus       833 ~TvIlvTH~~~~~~  846 (1560)
T PTZ00243        833 KTRVLATHQVHVVP  846 (1560)
T ss_pred             CEEEEEeCCHHHHH
Confidence            89999999887653

>PLN03130 ABC transporter C family member; Provisional

Probab=99.55  E-value=1.6e-14  Score=157.22  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-CeEEEec------ccCC--ChhHHHHHH----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAA------CDTF--RAAAYEQLL----------  147 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-g~V~l~~------~d~~--~~~~~~ql~----------  147 (302)
                      ++++|+||++++|+.++|+||+|||||||++.|+|.++|.+ |+|.+.+      ++++  ....++.+.          
T Consensus       631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y  710 (1622)
T PLN03130        631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERY  710 (1622)
T ss_pred             ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHH
Confidence            47899999999999999999999999999999999999998 7776543      3321  111111111          


Q ss_pred             -HhcccCC-------C------CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHH
Q psy2881         148 -ILGKYND-------V------PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKV  209 (302)
Q Consensus       148 -~~~~~~~-------~------~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~  209 (302)
                       ...+..+       .      .+-.......-.++.+-+||||+.++|+++|+|||+   |.++...+++. +....  
T Consensus       711 ~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--  788 (1622)
T PLN03130        711 ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--  788 (1622)
T ss_pred             HHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--
Confidence             0000000       0      111111123345666677999999999999999998   88877776654 44442  


Q ss_pred             hchhhccccceeehh
Q psy2881         210 IEKKIFELPYEIFLI  224 (302)
Q Consensus       210 ~~~~i~~~~hd~~lv  224 (302)
                      .++|++++||+...+
T Consensus       789 ~~kTvIlVTH~l~~l  803 (1622)
T PLN03130        789 RGKTRVLVTNQLHFL  803 (1622)
T ss_pred             cCCEEEEEECCHhHH
Confidence            368999999976543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.6e-14  Score=133.54  Aligned_cols=139  Identities=19%  Similarity=0.206  Sum_probs=96.8

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhccc----------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKY----------  152 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~----------  152 (302)
                      +++++++||++++|+.++++||+|+||||+++.|-+++.+++|+|.++|+|+....   .+.-+...++.          
T Consensus       276 r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~y  355 (497)
T COG5265         276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAY  355 (497)
T ss_pred             chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHH
Confidence            35788999999999999999999999999999999999999999999999863211   11111111111          


Q ss_pred             ---------------------------------CCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         153 ---------------------------------NDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       153 ---------------------------------~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                       +...+-...-...-.++.+-+|||+++.+|+++++||+|   |.++.
T Consensus       356 ni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te  435 (497)
T COG5265         356 NIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTE  435 (497)
T ss_pred             HHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHH
Confidence                                             000000000000111233345999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +.+...|++...  +.|.+++.|.+.-+.+
T Consensus       436 ~~iq~~l~~~~~--~rttlviahrlsti~~  463 (497)
T COG5265         436 QAIQAALREVSA--GRTTLVIAHRLSTIID  463 (497)
T ss_pred             HHHHHHHHHHhC--CCeEEEEeehhhhccC
Confidence            999999988863  5566667775444433

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.50  E-value=1e-13  Score=122.96  Aligned_cols=52  Identities=6%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         167 AAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       167 ~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                      .+..+-+||++++    .+|+++|+|||+   |+.....+++.|.++.+  +.++++++|+
T Consensus       162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~  220 (243)
T cd03272         162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFR  220 (243)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecC
Confidence            3444556899986    368999999997   99999999999988854  5667777775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.49  E-value=2.3e-14  Score=124.16  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=43.1

Q ss_pred             HHHHHHhCCCCeEEEcCCC---CccchH-HHHHHHHHHHHHhchhhccccceeeh
Q psy2881         173 AINIAQKKNTDIVIVDTSG---RLSTQS-HLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~---d~~~~~-~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +++++++.+|+++++|||+   |+.... .+.+.|.++.+..+.++++++|+..+
T Consensus       131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~  185 (204)
T cd03240         131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL  185 (204)
T ss_pred             HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH
Confidence            5788999999999999997   888888 89999988866446789999998654

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.48  E-value=6.6e-14  Score=118.88  Aligned_cols=140  Identities=16%  Similarity=0.221  Sum_probs=97.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK----RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK  162 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~  162 (302)
                      .+.+++|++.++||+-++||.+|||||-..+.|+|..+.    +..+..+.+.|..+....+.-+..++....-|.....
T Consensus        21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s  100 (330)
T COG4170          21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS  100 (330)
T ss_pred             EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence            367889999999999999999999999999999998763    2334455555554444333333333221111111111


Q ss_pred             CCCHHHHHH----------------------------H-----------------------------HHHHHHhCCCCeE
Q psy2881         163 ITDPAAIAF----------------------------N-----------------------------AINIAQKKNTDIV  185 (302)
Q Consensus       163 ~~~~~~~~~----------------------------~-----------------------------~la~al~~~~~ll  185 (302)
                      ..|+.+.+-                            +                             .||.|++.+|.++
T Consensus       101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL  180 (330)
T COG4170         101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL  180 (330)
T ss_pred             hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence            111111110                            0                             1888999999999


Q ss_pred             EEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         186 IVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       186 llDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      |.|||+   ++.++.+++.+|..++...+.++++++||+-.+-.
T Consensus       181 IADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~  224 (330)
T COG4170         181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQ  224 (330)
T ss_pred             eccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHH
Confidence            999998   78889999999999999889999999999865443

>KOG0927|consensus

Probab=99.47  E-value=8.2e-14  Score=132.20  Aligned_cols=134  Identities=13%  Similarity=0.114  Sum_probs=86.0

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-------------hhH------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-------------AAA------------  142 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-------------~~~------------  142 (302)
                      ++++++|.+..++.+++|||||+|||||++.+.|.+.|..|.|.-.....+.             .++            
T Consensus       405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~  484 (614)
T KOG0927|consen  405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEK  484 (614)
T ss_pred             hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccc
Confidence            4456677888999999999999999999999999999999988654332210             000            


Q ss_pred             -HHHHHHhcccCCCCeeec---CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881         143 -YEQLLILGKYNDVPVISE---KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF  215 (302)
Q Consensus       143 -~~ql~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~  215 (302)
                       .+.++.+-.++|+.--.+   .......+..+-.+++..+..|.+|+|||||   |.++...+-+.|.++    ..+++
T Consensus       485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv  560 (614)
T KOG0927|consen  485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVV  560 (614)
T ss_pred             hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCcee
Confidence             111222212222210000   0001112233344788889999999999998   777666555555554    44678


Q ss_pred             cccceeehhh
Q psy2881         216 ELPYEIFLII  225 (302)
Q Consensus       216 ~~~hd~~lvl  225 (302)
                      .+|||..++-
T Consensus       561 ~vSHDfrlI~  570 (614)
T KOG0927|consen  561 LVSHDFRLIS  570 (614)
T ss_pred             eeechhhHHH
Confidence            8999988753

>KOG0062|consensus

Probab=99.47  E-value=4.1e-14  Score=133.52  Aligned_cols=133  Identities=17%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE--EEecccCC-----------ChhHH----------H
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV--LLAACDTF-----------RAAAY----------E  144 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V--~l~~~d~~-----------~~~~~----------~  144 (302)
                      ++.+-++++..|..++|+|+||+|||||++.|+.- .-+.-.|  .+.|.++.           +....          +
T Consensus        95 LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~  173 (582)
T KOG0062|consen   95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLT  173 (582)
T ss_pred             hhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccch
Confidence            46677888999999999999999999999999981 1111111  01222221           11000          0


Q ss_pred             HHHHhcc-cCCCCeeec----CCC-CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhc
Q psy2881         145 QLLILGK-YNDVPVISE----KKI-TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIF  215 (302)
Q Consensus       145 ql~~~~~-~~~~~~~~~----~~~-~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~  215 (302)
                      ....+.. ..++.|-..    ... ..-.=.++-+||||+..+||+|||||||   |..+-..+-+.|..+    ..|++
T Consensus       174 l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~l  249 (582)
T KOG0062|consen  174 LEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSL  249 (582)
T ss_pred             HHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEE
Confidence            0011110 112222110    000 0000123445999999999999999999   777776666666554    56899


Q ss_pred             cccceeehhh
Q psy2881         216 ELPYEIFLII  225 (302)
Q Consensus       216 ~~~hd~~lvl  225 (302)
                      ++|||..+.=
T Consensus       250 iVSHDr~FLn  259 (582)
T KOG0062|consen  250 IVSHDRNFLN  259 (582)
T ss_pred             EEeccHHHHH
Confidence            9999987643

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.47  E-value=2.4e-14  Score=124.80  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhC----------CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         168 AIAFNAINIAQKK----------NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       168 ~~~~~~la~al~~----------~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +..+-++++|++.          +|+++|+|||+   |+.....+.+.|.++.+. +.+++++||+..++..
T Consensus       128 ~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~  198 (213)
T cd03279         128 ETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKER  198 (213)
T ss_pred             HHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHh
Confidence            3444458888864          67999999997   888888899999888654 7799999998776543

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.43  E-value=1.2e-13  Score=119.12  Aligned_cols=128  Identities=14%  Similarity=0.041  Sum_probs=70.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHH-Hhccc---CCCCeeecC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLL-ILGKY---NDVPVISEK  161 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~-~~~~~---~~~~~~~~~  161 (302)
                      .+.++++++  .|++++|+||||+||||+++.|++...- ..|. .+.+.     ...-|.. .+...   .++..-...
T Consensus        15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~-----~~~~q~~~l~~~~~~~d~l~~~~s~   86 (199)
T cd03283          15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCAS-----SFELPPVKIFTSIRVSDDLRDGISY   86 (199)
T ss_pred             eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecC-----ccCcccceEEEeccchhccccccCh
Confidence            355666555  5799999999999999999999987642 2232 11111     0100100 00000   000000000


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH-HHHHHHHHhchhhccccceeehh
Q psy2881         162 KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR-ELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       162 ~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~-~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .. .....+.+.+.++-..+|+++|+|||+   |+.....+.. .+..+.+ .+.+++++||+..++
T Consensus        87 ~~-~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~  151 (199)
T cd03283          87 FY-AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELA  151 (199)
T ss_pred             HH-HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHH
Confidence            00 011222333433322389999999996   7766665544 5666654 478899999987764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.42  E-value=3e-13  Score=116.76  Aligned_cols=127  Identities=16%  Similarity=0.078  Sum_probs=70.5

Q ss_pred             CCCcceecCCC-eEEEEEcCCCCCHHHHHHHHH-hHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCC-eee-cCCC
Q psy2881          89 EKPLIFKKCKP-FVIMIVGVNGVGKTTTIGKLA-NYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVP-VIS-EKKI  163 (302)
Q Consensus        89 l~~i~l~~~~g-~ii~lvGpnGsGKTTll~~La-g~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~-~~~~  163 (302)
                      .-++||++.+| ++++|+||||+||||+++.|+ +.+.+..| .|-...  ....+..+|+   ....+.. ... ....
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~--~~~~~~~~~~---~~~lg~~~~l~~~~s~   91 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE--GSSLPVFENI---FADIGDEQSIEQSLST   91 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc--cccCcCccEE---EEecCchhhhhcCcch
Confidence            34678999998 589999999999999999998 33333333 222110  0001111111   0001100 000 0000


Q ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHH-HHHHHHHHhchhhccccceee
Q psy2881         164 TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMR-ELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       164 ~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~-~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ..........++++ +.+|+++|+|||+   |+.....++. .+..+.+ .+.+++++||+..
T Consensus        92 fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~  152 (200)
T cd03280          92 FSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGE  152 (200)
T ss_pred             HHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHH
Confidence            01111222224443 5799999999997   7777676754 4566543 4778999999743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.42  E-value=3.5e-13  Score=116.52  Aligned_cols=129  Identities=10%  Similarity=0.003  Sum_probs=70.6

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh-hhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH-H
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-KKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA-A  168 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~-~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~-~  168 (302)
                      +.++++.+|++++|+|||||||||+++.|++.. ....|.....  ...+.+...++  + ...+..-.......... .
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~--~~~~i~~~dqi--~-~~~~~~d~i~~~~s~~~~e   95 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA--ESASIPLVDRI--F-TRIGAEDSISDGRSTFMAE   95 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc--cccccCCcCEE--E-EEecCcccccCCceeHHHH
Confidence            346777789999999999999999999999543 3444432211  10111111110  0 00000000000000111 1


Q ss_pred             HHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHhchhhccccceeehhh
Q psy2881         169 IAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       169 ~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ...-..+.+.+.+|+++|+|||+   |+.....+... +..+. ..+.+++++||+..++.
T Consensus        96 ~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~~~~~  155 (202)
T cd03243          96 LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFHELAD  155 (202)
T ss_pred             HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChHHHHH
Confidence            11111223456899999999996   77666666554 44444 34778999999866543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0066|consensus

Probab=99.40  E-value=5.7e-13  Score=123.79  Aligned_cols=130  Identities=19%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE--------EecccCC-----ChhHHHHHHHhcccCCC
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL--------LAACDTF-----RAAAYEQLLILGKYNDV  155 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~--------l~~~d~~-----~~~~~~ql~~~~~~~~~  155 (302)
                      +.+++|-+.--..+|||||||+||||+++.|.|-+.|+.|...        +.++-..     ...+.+   ++.+.+++
T Consensus       603 FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~E---yLqr~FNl  679 (807)
T KOG0066|consen  603 FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVE---YLQRKFNL  679 (807)
T ss_pred             hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHH---HHHHhcCC
Confidence            3445566666678999999999999999999999999887543        2221100     001111   22222333


Q ss_pred             Cee--------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhch
Q psy2881         156 PVI--------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEK  212 (302)
Q Consensus       156 ~~~--------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~  212 (302)
                      |+.                    ...++..   .++-++|......||+||||||+   |..+...+-+.+.    ....
T Consensus       680 pyq~ARK~LG~fGL~sHAHTikikdLSGGQ---KaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIn----ey~G  752 (807)
T KOG0066|consen  680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQ---KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAIN----EYNG  752 (807)
T ss_pred             ChHHHHHHhhhhhhhhccceEeeeecCCcc---hHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHH----hccC
Confidence            221                    1112222   22334555557899999999998   5554444444444    4455


Q ss_pred             hhccccceeehhhcCC
Q psy2881         213 KIFELPYEIFLIIDGN  228 (302)
Q Consensus       213 ~i~~~~hd~~lvl~~~  228 (302)
                      .+++++||-.++....
T Consensus       753 gVi~VsHDeRLi~eT~  768 (807)
T KOG0066|consen  753 GVIMVSHDERLIVETD  768 (807)
T ss_pred             cEEEEecccceeeecC
Confidence            7889999988877654

>KOG2355|consensus

Probab=99.40  E-value=4.6e-13  Score=113.41  Aligned_cols=135  Identities=19%  Similarity=0.141  Sum_probs=96.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH---HHH----hcccC----CC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ---LLI----LGKYN----DV  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q---l~~----~~~~~----~~  155 (302)
                      |++-++|++++.|....+||.|||||||++++|+|-.-..+|.|.+.|.+.|+....+-   +.+    |....    .+
T Consensus        28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agev  107 (291)
T KOG2355|consen   28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEV  107 (291)
T ss_pred             ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccc
Confidence            66778899999999999999999999999999999877777999999998875221110   001    11110    11


Q ss_pred             Cee---------ecCCCCCH-----------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         156 PVI---------SEKKITDP-----------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       156 ~~~---------~~~~~~~~-----------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                      |..         ..-.+.++                       .+..+-.|++.+++..+++|+||-|   |.-.+..++
T Consensus       108 plq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLL  187 (291)
T KOG2355|consen  108 PLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLL  187 (291)
T ss_pred             cccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHH
Confidence            110         00001111                       0111112778899999999999998   777888999


Q ss_pred             HHHHHHHHHhchhhcccccee
Q psy2881         201 RELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      +.+++-+++.+.+++.+||-.
T Consensus       188 eFlkeEce~RgatIVYATHIF  208 (291)
T KOG2355|consen  188 EFLKEECEQRGATIVYATHIF  208 (291)
T ss_pred             HHHHHHHhhcCcEEEEEeeec
Confidence            999999999999999999943

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.40  E-value=8.9e-13  Score=123.09  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=85.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe---EEEecccCC----ChhHHHHHHHhccc--CCCCeee-------
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS---VLLAACDTF----RAAAYEQLLILGKY--NDVPVIS-------  159 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~---V~l~~~d~~----~~~~~~ql~~~~~~--~~~~~~~-------  159 (302)
                      +..||+++++||||-||||+++.|||.++|++|+   +.+.=++.+    ..+.++++-.-...  .+-+++.       
T Consensus       364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl  443 (591)
T COG1245         364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL  443 (591)
T ss_pred             eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence            4568999999999999999999999999999885   111101100    11222332111111  1111100       


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         160 --------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       160 --------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                              ......-.+..+-+||.||.+++|+.|||||.   |...+...-..++++....+++.+++.||+.+
T Consensus       444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~  518 (591)
T COG1245         444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM  518 (591)
T ss_pred             chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh
Confidence                    00011112344456999999999999999997   88777788889999998888999999999875

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.40  E-value=3e-12  Score=110.43  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-----C--------------eE--EEecccCCC--hh--HHH
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-----K--------------SV--LLAACDTFR--AA--AYE  144 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-----g--------------~V--~l~~~d~~~--~~--~~~  144 (302)
                      +++++++.+| +.+|+||||+||||++..|...+....     |              .|  .+.....+.  ..  ...
T Consensus        13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   91 (198)
T cd03276          13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD   91 (198)
T ss_pred             eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence            4566777666 889999999999999999875432210     1              11  111111111  10  111


Q ss_pred             HHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH----hCCCCeEEEcCCC---CccchHHHHHHHHHHHHH--hchhhc
Q psy2881         145 QLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ----KKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV--IEKKIF  215 (302)
Q Consensus       145 ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al----~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~--~~~~i~  215 (302)
                      +...+.+. .-............+..+-.|++|+    +.+|+++|+|||+   |......+++.|.++.+.  .+.+++
T Consensus        92 ~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~ii  170 (198)
T cd03276          92 MARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIF  170 (198)
T ss_pred             HHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            22222222 0000001111122333444577777    5899999999997   888888899999888654  235788


Q ss_pred             cccceeehhhcC
Q psy2881         216 ELPYEIFLIIDG  227 (302)
Q Consensus       216 ~~~hd~~lvl~~  227 (302)
                      +++|++..+.+.
T Consensus       171 i~th~~~~i~~~  182 (198)
T cd03276         171 ITPQDISGLASS  182 (198)
T ss_pred             EECCcccccccc
Confidence            999998876543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.38  E-value=3.3e-12  Score=114.41  Aligned_cols=54  Identities=11%  Similarity=0.180  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         170 AFNAINIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       170 ~~~~la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+-.||++++.+   |+++|+|||+   |+.....+++.|.++.+. +.++++++|+..++
T Consensus       176 QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i  235 (261)
T cd03271         176 QRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVI  235 (261)
T ss_pred             HHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence            334489999986   7999999997   888899999999998754 78999999987653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.37  E-value=2e-12  Score=116.25  Aligned_cols=118  Identities=15%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-HhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-ILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      ..++|+|||||||||+++.|++.+.|..|+|.+.|.++........+. .+.......+.....-.+...........+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~  191 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR  191 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence            578999999999999999999999999999999998875332211221 1111111111110000111111112233344


Q ss_pred             hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +.+|+++++|||+...   .+...+..+.  .|.++++++|+..
T Consensus       192 ~~~P~villDE~~~~e---~~~~l~~~~~--~G~~vI~ttH~~~  230 (270)
T TIGR02858       192 SMSPDVIVVDEIGREE---DVEALLEALH--AGVSIIATAHGRD  230 (270)
T ss_pred             hCCCCEEEEeCCCcHH---HHHHHHHHHh--CCCEEEEEechhH
Confidence            5799999999998432   2333344432  4788999999743

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0927|consensus

Probab=99.35  E-value=1.3e-12  Score=124.07  Aligned_cols=135  Identities=18%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe--EEEecccCC--ChhHH-----------HHHHHhcc
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS--VLLAACDTF--RAAAY-----------EQLLILGK  151 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~--V~l~~~d~~--~~~~~-----------~ql~~~~~  151 (302)
                      .++++..|++.+|+.++|+|||||||||++++|++-..|..-+  ++.......  ...+.           ..+.++.+
T Consensus        89 ~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E  168 (614)
T KOG0927|consen   89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAE  168 (614)
T ss_pred             eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999998865433  333333221  00000           01111111


Q ss_pred             cCC------------------------------------CCeeecC-----CCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         152 YND------------------------------------VPVISEK-----KITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       152 ~~~------------------------------------~~~~~~~-----~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                      .+.                                    ..+....     ....-.-..+-+|||++..+|+++|||||
T Consensus       169 ~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP  248 (614)
T KOG0927|consen  169 DLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEP  248 (614)
T ss_pred             HHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCC
Confidence            110                                    0000000     00000112223499999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +   |+.+...+-+.|.++.+.   ++++++|+..+.
T Consensus       249 tnhLDleA~~wLee~L~k~d~~---~lVi~sh~QDfl  282 (614)
T KOG0927|consen  249 TNHLDLEAIVWLEEYLAKYDRI---ILVIVSHSQDFL  282 (614)
T ss_pred             ccCCCHHHHHHHHHHHHhccCc---eEEEEecchhhh
Confidence            8   888888888888877431   567778865543

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.34  E-value=1.3e-12  Score=109.09  Aligned_cols=125  Identities=12%  Similarity=0.085  Sum_probs=77.8

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHH
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIA  170 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~  170 (302)
                      +.++.+.++.++.|+||||+||||+++.++...-...+.+.- ..+. +.+..     .+ .....++.........+..
T Consensus        13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~-~~g~~-----~~-~~~~~~i~~~~~lS~G~~~   84 (162)
T cd03227          13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV-KAGCI-----VA-AVSAELIFTRLQLSGGEKE   84 (162)
T ss_pred             ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc-cCCCc-----ce-eeEEEEehheeeccccHHH
Confidence            345555566799999999999999999988777655544333 1111 00100     00 0000000000011112333


Q ss_pred             HHHHHHHHhC----CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         171 FNAINIAQKK----NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       171 ~~~la~al~~----~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ...+++++..    +|+++|+|||+   |+.....+.+.+.++... +.+++++||+..+.
T Consensus        85 ~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~  144 (162)
T cd03227          85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELA  144 (162)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHH
Confidence            4457777765    78999999997   888888888888887665 77889999987653

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.33  E-value=2.7e-12  Score=125.23  Aligned_cols=133  Identities=16%  Similarity=0.141  Sum_probs=89.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec-cc-------CC-Ch-hHHHHHHHhcccCC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA-CD-------TF-RA-AAYEQLLILGKYND--  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~-~d-------~~-~~-~~~~ql~~~~~~~~--  154 (302)
                      ..+++++|++++|+-+.|.|||||||||+++.|||+.+--+|+|..-. .+       +| .. .-++++. |++...  
T Consensus       407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~-YP~~~~~~  485 (604)
T COG4178         407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALC-YPNAAPDF  485 (604)
T ss_pred             eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHh-CCCCCCCC
Confidence            357789999999999999999999999999999999998788876652 21       11 11 1223332 222211  


Q ss_pred             -------------CCeee-cCC-------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881         155 -------------VPVIS-EKK-------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI  210 (302)
Q Consensus       155 -------------~~~~~-~~~-------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~  210 (302)
                                   ++-+. ...       .....+..+-++||.+.++|++++|||+|   |..+...+++.+++-.  .
T Consensus       486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p  563 (604)
T COG4178         486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--P  563 (604)
T ss_pred             ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--C
Confidence                         11000 000       01123334445999999999999999998   8888888888887632  3


Q ss_pred             chhhccccceee
Q psy2881         211 EKKIFELPYEIF  222 (302)
Q Consensus       211 ~~~i~~~~hd~~  222 (302)
                      +.+++.+.|...
T Consensus       564 ~~tvISV~Hr~t  575 (604)
T COG4178         564 DATVISVGHRPT  575 (604)
T ss_pred             CCEEEEeccchh
Confidence            567777778543

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.33  E-value=2.6e-12  Score=114.57  Aligned_cols=53  Identities=4%  Similarity=0.058  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhC----CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         170 AFNAINIAQKK----NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       170 ~~~~la~al~~----~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+-+|+++++.    .|+++|+|||+   |+.....+.+.|.++.+. +.+++++||+..+
T Consensus       162 ~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~  221 (247)
T cd03275         162 TMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEF  221 (247)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHH
Confidence            33458888875    48999999997   888888899999988654 7789999998543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.32  E-value=5.3e-12  Score=112.76  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         169 IAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       169 ~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..+-++|++++    .+|+++|+|||+   |+.....+++.|+++.+  +.+++++||+.
T Consensus       172 ~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~ii~iSH~~  229 (251)
T cd03273         172 RSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQFIVVSLKE  229 (251)
T ss_pred             HHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECCH
Confidence            33345888876    578999999997   88888889999988753  67889999973

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.30  E-value=4.3e-12  Score=109.86  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=72.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD  165 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~  165 (302)
                      .+.++++++..+|++++|+||||+||||+++.++++.-- .-|- .+ -....+....+++.   ...+..-........
T Consensus        17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v-pa~~~~l~~~d~I~---~~~~~~d~~~~~~S~   91 (204)
T cd03282          17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV-PAEYATLPIFNRLL---SRLSNDDSMERNLST   91 (204)
T ss_pred             EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc-chhhcCccChhhee---EecCCccccchhhhH
Confidence            467889999999999999999999999999999987532 1121 11 11111111111110   011110000000000


Q ss_pred             HHHHHHH-HHHHHHhCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeehh
Q psy2881         166 PAAIAFN-AINIAQKKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       166 ~~~~~~~-~la~al~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ......+ ..+.+++.+|+++|+|||+   |+.....+ ...+..+.+ .+.+++++||+..++
T Consensus        92 fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~  154 (204)
T cd03282          92 FASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIA  154 (204)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence            0111111 1223456889999999996   45443333 334455544 378999999987664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.30  E-value=5.1e-12  Score=110.11  Aligned_cols=51  Identities=10%  Similarity=0.154  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhC----CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         169 IAFNAINIAQKK----NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       169 ~~~~~la~al~~----~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..+-.+++|++.    +|+++++|||+   |+.....+.+.++++.+  +.++++++|+.
T Consensus       133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~  190 (212)
T cd03274         133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN  190 (212)
T ss_pred             HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH
Confidence            334458888863    58999999997   88899999999998753  45677788863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.30  E-value=5.1e-12  Score=116.88  Aligned_cols=137  Identities=12%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh--------hhCCCeEEEecccC-----------CC-hhHHHH
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF--------KKRKKSVLLAACDT-----------FR-AAAYEQ  145 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~--------~~~~g~V~l~~~d~-----------~~-~~~~~q  145 (302)
                      ..+++|+||++++|++++++|++|+||||++++|+|..        +|++|.|.+-....           ++ ....+|
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh  475 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH  475 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence            35789999999999999999999999999999999875        47788887643211           01 111223


Q ss_pred             HHHhcccCC----------CC----eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         146 LLILGKYND----------VP----VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       146 l~~~~~~~~----------~~----~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                      +..-....+          +.    +..........+.-+..||.++..+|.++++||-.   |..+...+..-+.++++
T Consensus       476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR  555 (593)
T COG2401         476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR  555 (593)
T ss_pred             HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            222111111          10    01111111112222234899999999999999996   88888899999999999


Q ss_pred             Hhchhhccccceee
Q psy2881         209 VIEKKIFELPYEIF  222 (302)
Q Consensus       209 ~~~~~i~~~~hd~~  222 (302)
                      ..+.|.++++|...
T Consensus       556 e~giTlivvThrpE  569 (593)
T COG2401         556 EAGITLIVVTHRPE  569 (593)
T ss_pred             HhCCeEEEEecCHH
Confidence            99999999998644

>KOG0054|consensus

Probab=99.29  E-value=8.1e-12  Score=131.54  Aligned_cols=137  Identities=15%  Similarity=0.202  Sum_probs=95.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC--------ChhHHHHHHHhcccCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF--------RAAAYEQLLILGKYND----  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~--------~~~~~~ql~~~~~~~~----  154 (302)
                      +.++|+||++++|+.++++||.|||||+|+..|.|-+++.+|+|.+.|.--|        ....++.+ .++..++    
T Consensus       535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNI-LFG~~~d~~rY  613 (1381)
T KOG0054|consen  535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENI-LFGSPYDEERY  613 (1381)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhh-hcCccccHHHH
Confidence            3789999999999999999999999999999999999999999988875211        11111111 0111100    


Q ss_pred             ------------CCee---------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881         155 ------------VPVI---------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI  210 (302)
Q Consensus       155 ------------~~~~---------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~  210 (302)
                                  +..+         .......-.++++-.+|||.-++.|++|+|.|.   |.+....+++..-.- --.
T Consensus       614 ~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~-~L~  692 (1381)
T KOG0054|consen  614 DKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG-LLR  692 (1381)
T ss_pred             HHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh-hhc
Confidence                        0000         111112234566667999999999999999996   888888877766522 123


Q ss_pred             chhhccccceeehhh
Q psy2881         211 EKKIFELPYEIFLII  225 (302)
Q Consensus       211 ~~~i~~~~hd~~lvl  225 (302)
                      ++|++++||.+.+.-
T Consensus       693 ~KT~ILVTHql~~L~  707 (1381)
T KOG0054|consen  693 GKTVILVTHQLQFLP  707 (1381)
T ss_pred             CCEEEEEeCchhhhh
Confidence            789999999655433

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.8e-11  Score=117.24  Aligned_cols=139  Identities=12%  Similarity=0.136  Sum_probs=97.8

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH----Hhccc------------
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL----ILGKY------------  152 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~----~~~~~------------  152 (302)
                      ++++||++.+|||++|.|-=|||+|-++..|.|..++.+|+|.++|.+.......+-++    +.++.            
T Consensus       275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI  354 (500)
T COG1129         275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI  354 (500)
T ss_pred             eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence            46899999999999999999999999999999988889999999998764322211111    11110            


Q ss_pred             ---CCCCeeecCC---CCCHH------------------------------HHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         153 ---NDVPVISEKK---ITDPA------------------------------AIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       153 ---~~~~~~~~~~---~~~~~------------------------------~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                         ..++......   -.+..                              ...+-.|++.+..+|++||+||||   |.
T Consensus       355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV  434 (500)
T COG1129         355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV  434 (500)
T ss_pred             HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence               0001000000   00000                              001112999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      .++.++.+.++++++. |.+++++|-|+..++..+
T Consensus       435 GAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~  468 (500)
T COG1129         435 GAKAEIYRLIRELAAE-GKAILMISSELPELLGLS  468 (500)
T ss_pred             chHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhC
Confidence            9999999999999976 888888887766555443

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.22  E-value=3.7e-11  Score=105.27  Aligned_cols=131  Identities=13%  Similarity=0.079  Sum_probs=77.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh-HhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN-YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKIT  164 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag-~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~  164 (302)
                      .+..++++.+.+|++++|+||||+||||+++.+++ .+.++.|...+...  .+.+..+++  +.. .+.. -... ...
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~--~~~~~~~~i--~~~-~~~~d~~~~-~~S   92 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS--ATLSIFDSV--LTR-MGASDSIQH-GMS   92 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc--eEEeccceE--EEE-ecCcccccc-ccc
Confidence            46778999999999999999999999999999999 56678887665421  222221111  000 0000 0000 000


Q ss_pred             CHHHHHHHHHHHH--HhCCCCeEEEcCCC---CccchHH-HHHHHHHHHHHhchhhccccceeehh
Q psy2881         165 DPAAIAFNAINIA--QKKNTDIVIVDTSG---RLSTQSH-LMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       165 ~~~~~~~~~la~a--l~~~~~llllDEP~---d~~~~~~-l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .....+.+ ++..  .+.++.++|+|||+   ++..... ....+..+.+..+.+++++||+..+.
T Consensus        93 tF~~e~~~-~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~  157 (222)
T cd03287          93 TFMVELSE-TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG  157 (222)
T ss_pred             hHHHHHHH-HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence            01111111 2222  34689999999996   4333333 34455566554477899999987763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.22  E-value=5.2e-11  Score=104.09  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.++++++..+ ++++|+||||+||||+++.+++..
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            56778888765 899999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.21  E-value=4.2e-11  Score=104.41  Aligned_cols=132  Identities=12%  Similarity=0.113  Sum_probs=71.3

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh--HhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCCC
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKITD  165 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~~  165 (302)
                      -.++++.-..+.+++|+||||+||||+++.++.  ++ +..|......  ..+.+..+|+..   ..+.. -.......-
T Consensus        19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~~~~~~~d~i~~---~l~~~~si~~~~S~f   92 (213)
T cd03281          19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--SATIGLVDKIFT---RMSSRESVSSGQSAF   92 (213)
T ss_pred             cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--CcEEeeeeeeee---eeCCccChhhccchH
Confidence            334444322237999999999999999999984  33 4455444321  112222122110   00000 000000001


Q ss_pred             HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH-HHHHHHHHHHH--hchhhccccceeehhhc
Q psy2881         166 PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH-LMRELKKIKKV--IEKKIFELPYEIFLIID  226 (302)
Q Consensus       166 ~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~-l~~~L~~l~~~--~~~~i~~~~hd~~lvl~  226 (302)
                      ..+...-.++++++.+|.++|+|||+   |+..... +...++.+.+.  .+.+++++||+..++..
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            11122223556677899999999997   5543333 34566776543  13478899998777543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0065|consensus

Probab=99.21  E-value=7e-12  Score=129.79  Aligned_cols=134  Identities=17%  Similarity=0.127  Sum_probs=88.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCC------ChhHHHH-------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTF------RAAAYEQ-------------  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~------~~~~~~q-------------  145 (302)
                      .+|+||+=-+.||-.++|+|+||||||||++.|||...  --.|+|.++|....      +.+..+|             
T Consensus       805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrES  884 (1391)
T KOG0065|consen  805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRES  884 (1391)
T ss_pred             EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHH
Confidence            46788888889999999999999999999999999854  24689999986543      1111111             


Q ss_pred             HHHhcccC---CCCe----------------------ee--cCCCCCHHHHHHHHHHHHHhCCC-CeEEEcCCC---Ccc
Q psy2881         146 LLILGKYN---DVPV----------------------IS--EKKITDPAAIAFNAINIAQKKNT-DIVIVDTSG---RLS  194 (302)
Q Consensus       146 l~~~~~~~---~~~~----------------------~~--~~~~~~~~~~~~~~la~al~~~~-~llllDEP~---d~~  194 (302)
                      |++-+...   .++.                      +.  ...+....++-+-.|+--|+.+| -+|+|||||   |.+
T Consensus       885 L~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsq  964 (1391)
T KOG0065|consen  885 LRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQ  964 (1391)
T ss_pred             HHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHH
Confidence            21111000   0000                      00  00111111111111444467889 899999997   999


Q ss_pred             chHHHHHHHHHHHHHhchhhcccccee
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      +...+++.++++++ .|.+|+.+-|..
T Consensus       965 aA~~i~~~lrkla~-tGqtIlCTIHQP  990 (1391)
T KOG0065|consen  965 AAAIVMRFLRKLAD-TGQTILCTIHQP  990 (1391)
T ss_pred             HHHHHHHHHHHHHh-cCCeEEEEecCC
Confidence            99999999999998 589998888854

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.20  E-value=5.5e-11  Score=100.84  Aligned_cols=129  Identities=13%  Similarity=0.141  Sum_probs=73.0

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe-----cccCCChhHHH-HHHHhcccCCCCeeecCC---C
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA-----ACDTFRAAAYE-QLLILGKYNDVPVISEKK---I  163 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~-----~~d~~~~~~~~-ql~~~~~~~~~~~~~~~~---~  163 (302)
                      .+...++.+.+|+||||||||+++..|.-.+--........     ..+..+.++.. .+...... ....+.+..   -
T Consensus        16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~-~~~~~~~~~~~~~   94 (178)
T cd03239          16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDK-SYFLVLQGKVEQI   94 (178)
T ss_pred             EEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEEC-ceEEecCCcCccc
Confidence            33333333999999999999999998876543111111000     01111111100 00000000 000111110   0


Q ss_pred             CCHHHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         164 TDPAAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       164 ~~~~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      ....+..+-.++++++    .+|+++++|||+   |+.....+.+.|.++.+. +.++++++|+...
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~  160 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEM  160 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHH
Confidence            1234445556888775    689999999997   888888899999888654 6789999998654

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.12  E-value=1.3e-10  Score=99.19  Aligned_cols=117  Identities=14%  Similarity=0.082  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHH-hHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLA-NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK  179 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~La-g~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~  179 (302)
                      ++.|.||||+||||+++.++ ..+....|.......  .+.+..+++   ...++..-............. ..+++++.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~--~~~~~~d~i---l~~~~~~d~~~~~~s~fs~~~-~~l~~~l~   74 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES--AELPVFDRI---FTRIGASDSLAQGLSTFMVEM-KETANILK   74 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh--eEecccceE---EEEeCCCCchhccccHHHHHH-HHHHHHHH
Confidence            36799999999999999999 444455554332211  111111110   011111100000001111111 22555555


Q ss_pred             C--CCCeEEEcCCC---CccchHHHHH-HHHHHHHHhchhhccccceeeh
Q psy2881         180 K--NTDIVIVDTSG---RLSTQSHLMR-ELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       180 ~--~~~llllDEP~---d~~~~~~l~~-~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .  +|+++|+|||+   |+.....+.. .++.+.+..+.+++++||+..+
T Consensus        75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l  124 (185)
T smart00534       75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL  124 (185)
T ss_pred             hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence            5  99999999997   7665555543 4455544346788999998754

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.12  E-value=1.3e-10  Score=101.27  Aligned_cols=54  Identities=7%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             HHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhc-hhhccccceeehhhcCC
Q psy2881         175 NIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIE-KKIFELPYEIFLIIDGN  228 (302)
Q Consensus       175 a~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~-~~i~~~~hd~~lvl~~~  228 (302)
                      +++++.+|+++|+|||+   |+.....+++.|.++.+..+ .++++++|++..+++.+
T Consensus       142 a~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~  199 (213)
T cd03277         142 SLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH  199 (213)
T ss_pred             HHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence            34456899999999997   99999999999999876523 46889999876655443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.12  E-value=1.2e-10  Score=102.08  Aligned_cols=126  Identities=12%  Similarity=0.040  Sum_probs=67.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD  165 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~  165 (302)
                      .+.++++++..++++++|.||||+||||+++.++-..- ..-|-  +.-++.......+   .+...++..-.. .....
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~--~vpa~~~~~~~~~---~il~~~~l~d~~-~~~lS   91 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC--FVPCDSADIPIVD---CILARVGASDSQ-LKGVS   91 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC--CcCcccEEEeccc---eeEeeeccccch-hcCcC
Confidence            46778999988899999999999999999999874321 11220  0001100001000   011111111000 01111


Q ss_pred             HHHHHHHHHHHHH--hCCCCeEEEcCC---C---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         166 PAAIAFNAINIAQ--KKNTDIVIVDTS---G---RLSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       166 ~~~~~~~~la~al--~~~~~llllDEP---~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                      ....-...+++++  +.+|+++|+|||   |   |.....  ...+..+.+..+.+++++||+
T Consensus        92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlisTH~  152 (222)
T cd03285          92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFATHF  152 (222)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEEech
Confidence            1112222355555  689999999999   4   433322  223344444346788999995

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.10  E-value=2.3e-09  Score=98.25  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=70.0

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HH----HHHHHhcccCCCCeeec
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AY----EQLLILGKYNDVPVISE  160 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~----~ql~~~~~~~~~~~~~~  160 (302)
                      +++++++...++.+++|+||+|||||||+..++..+...+.+|.+.+.|++...   +.    .++.......++.+...
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSM  102 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeec
Confidence            345567777889999999999999999999999999888899999999876421   11    11211111222222111


Q ss_pred             CCC---CCHHHHHHHHHHHHHhCCCCeEEEcCCCCccc
Q psy2881         161 KKI---TDPAAIAFNAINIAQKKNTDIVIVDTSGRLST  195 (302)
Q Consensus       161 ~~~---~~~~~~~~~~la~al~~~~~llllDEP~d~~~  195 (302)
                      ...   ........+.+...-..++|++|+|+||..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~  140 (300)
T TIGR00750       103 PTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS  140 (300)
T ss_pred             CccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh
Confidence            111   11222334445555567999999999994433

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.06  E-value=5.7e-10  Score=120.70  Aligned_cols=50  Identities=8%  Similarity=0.191  Sum_probs=44.0

Q ss_pred             HHHHHh---CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         174 INIAQK---KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       174 la~al~---~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ||++++   .+|+++|+|||+   |+.....+++.|.++.+. |.++++++|++..+
T Consensus       820 LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i  875 (1809)
T PRK00635        820 LAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV  875 (1809)
T ss_pred             HHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence            889997   699999999997   888999999999998754 78999999987765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.06  E-value=1.2e-10  Score=109.06  Aligned_cols=49  Identities=14%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             HHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         173 AINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +||.+++++.|+.++|||+   |...+-+.-..++++++. ++.++++.||+.
T Consensus       223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLa  274 (591)
T COG1245         223 AIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLA  274 (591)
T ss_pred             HHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHH
Confidence            4899999999999999998   777777788888888765 788999999975

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.04  E-value=1.1e-09  Score=113.08  Aligned_cols=50  Identities=12%  Similarity=0.240  Sum_probs=43.1

Q ss_pred             HHHHHhC---CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         174 INIAQKK---NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       174 la~al~~---~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ||++++.   +|+++|+|||+   |+.....+++.|.++.+. +.++++++|+..++
T Consensus       839 LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~i  894 (924)
T TIGR00630       839 LAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDVI  894 (924)
T ss_pred             HHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence            8889886   59999999997   888899999999998754 78999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.04  E-value=8.9e-10  Score=114.04  Aligned_cols=51  Identities=12%  Similarity=0.229  Sum_probs=44.3

Q ss_pred             HHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         173 AINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       173 ~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .||++++.+|   +++|+|||+   |+.....+++.|.++.+ .|.++++++|+...+
T Consensus       840 ~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i  896 (943)
T PRK00349        840 KLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVI  896 (943)
T ss_pred             HHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH
Confidence            3899999999   999999997   88888999999999875 478999999987654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.04  E-value=2.1e-10  Score=109.24  Aligned_cols=70  Identities=19%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCCh--hHHHHHHH
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRA--AAYEQLLI  148 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~--~~~~ql~~  148 (302)
                      +...+..-+..+++++|+++.+|++++|+|||||||||+++  +++..|.+| +|.+.|.+.+..  .+.+.++.
T Consensus        10 i~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~   82 (504)
T TIGR03238        10 VKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDE   82 (504)
T ss_pred             echHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHH
Confidence            45566666777889999999999999999999999999999  677777666 899999998753  33344443

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.03  E-value=4.3e-10  Score=98.30  Aligned_cols=133  Identities=12%  Similarity=0.087  Sum_probs=74.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKIT  164 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~  164 (302)
                      .+.++++++..+|+++.|.||||+||||+++.++...-. +-|--.  -++-.+.+...++  +.. ++.. -... ...
T Consensus        18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~v--pa~~~~i~~~~~i--~~~-~~~~d~~~~-~~S   91 (218)
T cd03286          18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDV--PAKSMRLSLVDRI--FTR-IGARDDIMK-GES   91 (218)
T ss_pred             eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCcc--CccccEeccccEE--EEe-cCccccccc-Ccc
Confidence            467789999988999999999999999999999887442 222100  0000111100000  000 0000 0000 000


Q ss_pred             CHHH---HHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHhchhhccccceeehhhcC
Q psy2881         165 DPAA---IAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       165 ~~~~---~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ....   .....+.  .+.+|.++|+|||+   ++.....+... +..+.+..+.+++++||+..++...
T Consensus        92 tF~~e~~~~~~il~--~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~  159 (218)
T cd03286          92 TFMVELSETANILR--HATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF  159 (218)
T ss_pred             hHHHHHHHHHHHHH--hCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence            1111   1111122  24789999999996   55555555555 5555543378889999988776543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.03  E-value=2.2e-09  Score=88.15  Aligned_cols=122  Identities=17%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhc---ccCCCCeeecCCCCC-HHHHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG---KYNDVPVISEKKITD-PAAIAFNAINI  176 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~---~~~~~~~~~~~~~~~-~~~~~~~~la~  176 (302)
                      +++|.||+|+||||++..+++...+.++.|.+.+.+........++....   ......+........ .........+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL   80 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence            36899999999999999999999888999999988765433322221111   111222222222222 11122223456


Q ss_pred             HHhCCCCeEEEcCCC---Ccc---------chHHHHHHHHHHHHHhchhhccccceee
Q psy2881         177 AQKKNTDIVIVDTSG---RLS---------TQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       177 al~~~~~llllDEP~---d~~---------~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +...+|+++++||+.   +..         .....+..|....+..+.++++++|...
T Consensus        81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  138 (165)
T cd01120          81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS  138 (165)
T ss_pred             HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence            677899999999997   111         1123333444444445777778887543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR01069 mutS2 MutS2 family protein

Probab=99.02  E-value=2.9e-10  Score=115.97  Aligned_cols=126  Identities=16%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             cceecCCC-eEEEEEcCCCCCHHHHHHHHHhH-hhhCCC-eEEEecccCCChhHHHHHHHhcccCCCC--eeecCCCCCH
Q psy2881          92 LIFKKCKP-FVIMIVGVNGVGKTTTIGKLANY-FKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVP--VISEKKITDP  166 (302)
Q Consensus        92 i~l~~~~g-~ii~lvGpnGsGKTTll~~Lag~-~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~--~~~~~~~~~~  166 (302)
                      +++.+..+ ++++|+||||+||||+++.+++. +.+..| .|.....  ...+...++  +. ..+..  .....+....
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~--~~~~~~d~i--~~-~i~~~~si~~~LStfS~  388 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH--SEIPYFEEI--FA-DIGDEQSIEQNLSTFSG  388 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc--ccccchhhe--ee-ecChHhHHhhhhhHHHH
Confidence            57777666 89999999999999999999998 556655 3332111  111111111  00 00000  0000000000


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeehh
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .......+.++ +.+|.++|+|||+   |+.....+ ...+..+.+ .+.+++++||+..+.
T Consensus       389 ~m~~~~~il~~-~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~  448 (771)
T TIGR01069       389 HMKNISAILSK-TTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK  448 (771)
T ss_pred             HHHHHHHHHHh-cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence            11111112222 2589999999997   77766666 355555544 577889999987663

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0066|consensus

Probab=99.01  E-value=6.3e-10  Score=103.78  Aligned_cols=137  Identities=18%  Similarity=0.077  Sum_probs=81.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCC----------------Chh--------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTF----------------RAA--------  141 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~----------------~~~--------  141 (302)
                      .+.+.|+.|-.|..++||||||-|||||++.|+...-  |..=.|.+..+.+.                |..        
T Consensus       279 LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L  358 (807)
T KOG0066|consen  279 LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKL  358 (807)
T ss_pred             eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3456678888899999999999999999999997532  55555666443321                100        


Q ss_pred             ----------HHHHHHHhccc-CCCCeeecC---------CCCCHH------------HHHHHHHHHHHhCCCCeEEEcC
Q psy2881         142 ----------AYEQLLILGKY-NDVPVISEK---------KITDPA------------AIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       142 ----------~~~ql~~~~~~-~~~~~~~~~---------~~~~~~------------~~~~~~la~al~~~~~llllDE  189 (302)
                                +.+.+...+.. ..+......         .+.+..            =.++-.+|||+...|-+++|||
T Consensus       359 ~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDE  438 (807)
T KOG0066|consen  359 MSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDE  438 (807)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecC
Confidence                      11111111000 000000000         000000            0011229999999999999999


Q ss_pred             CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+   |......+-+.|+-+    .+|.++++||.-++-+-|
T Consensus       439 PTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VC  476 (807)
T KOG0066|consen  439 PTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVC  476 (807)
T ss_pred             CccccccceeeehhhHHhhh----hheeEEEecccchHHHHH
Confidence            98   666666666666665    457889999987765544

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.01  E-value=5.1e-10  Score=102.99  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=72.2

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCC-CCHHHHH
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI-TDPAAIA  170 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~-~~~~~~~  170 (302)
                      +++.+..|+.++|+||+||||||+++.|++++++..+.|.+.  |.......     ..+.  +.+...... .......
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~-----~~~~--~~l~~~~~~~~~~~~~~  207 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLP-----HPNY--VHLFYSKGGQGLAKVTP  207 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCC-----CCCE--EEEEecCCCCCcCccCH
Confidence            356678899999999999999999999999998888866664  33221110     0011  111111110 0111123


Q ss_pred             HHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         171 FNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       171 ~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      .+.+..++-.+|+++++|||.+    .+.++.++.+. ..+..++.+.|..
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~----~e~~~~l~a~~-~g~~~~i~T~Ha~  253 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG----DEAFDFIRAVN-TGHPGSITTLHAG  253 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC----HHHHHHHHHHh-cCCCeEEEEEeCC
Confidence            3557778889999999999975    33556666665 2233445666753

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.99  E-value=5.3e-10  Score=95.39  Aligned_cols=91  Identities=15%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC--CCCHHHHHH
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK--ITDPAAIAF  171 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~--~~~~~~~~~  171 (302)
                      +.+.+|+.++|+||||||||||++.|+++++++.|.|.+.+..-....       ....  +.+.....  .........
T Consensus        20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~   90 (186)
T cd01130          20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP-------HPNW--VRLVTRPGNVEGSGEVTMA   90 (186)
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC-------CCCE--EEEEEecCCCCCCCccCHH
Confidence            345679999999999999999999999999998898887543322110       0111  11111111  001111233


Q ss_pred             HHHHHHHhCCCCeEEEcCCCCc
Q psy2881         172 NAINIAQKKNTDIVIVDTSGRL  193 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~d~  193 (302)
                      +.+..++-.+||+++++|--+.
T Consensus        91 ~~l~~~lR~~pd~i~igEir~~  112 (186)
T cd01130          91 DLLRSALRMRPDRIIVGEVRGG  112 (186)
T ss_pred             HHHHHHhccCCCEEEEEccCcH
Confidence            4566677789999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.99  E-value=4.5e-10  Score=86.69  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      +++++++|++++|++++|+||||||||||++.+.      +|++.+.+.|...
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~   49 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE   49 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence            4688999999999999999999999999999986      7889999988643

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.98  E-value=2.2e-09  Score=92.50  Aligned_cols=106  Identities=18%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCCHHHHHHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITDPAAIAFNAINIAQ  178 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~al  178 (302)
                      +++|+||+||||||+++.|++.+.+ .++.|.....+....        +..  ...++.+ ..+.+. ....+++++++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~--------~~~--~~~~i~q~~vg~~~-~~~~~~i~~aL   71 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV--------HES--KRSLINQREVGLDT-LSFENALKAAL   71 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc--------ccC--ccceeeecccCCCc-cCHHHHHHHHh
Confidence            7889999999999999999998875 467777665432100        000  1111111 111111 12335678889


Q ss_pred             hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ..+|+++++||+.|...    +..+.+.+. .|..++.+.|...
T Consensus        72 r~~pd~ii~gEird~e~----~~~~l~~a~-~G~~v~~t~Ha~~  110 (198)
T cd01131          72 RQDPDVILVGEMRDLET----IRLALTAAE-TGHLVMSTLHTNS  110 (198)
T ss_pred             cCCcCEEEEcCCCCHHH----HHHHHHHHH-cCCEEEEEecCCc
Confidence            99999999999976543    233333333 3566777778554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.97  E-value=1e-08  Score=84.25  Aligned_cols=38  Identities=42%  Similarity=0.513  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++++|++||||||++..++..+.+.++++.+.+.|..
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~   38 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS   38 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence            37899999999999999999999999999999998864

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0060|consensus

Probab=98.96  E-value=2.3e-09  Score=103.07  Aligned_cols=132  Identities=12%  Similarity=0.104  Sum_probs=82.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc----C-------C-Ch-hHHHHHHHh-----
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD----T-------F-RA-AAYEQLLIL-----  149 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d----~-------~-~~-~~~~ql~~~-----  149 (302)
                      +.+++||++..|+.+.|.||||||||+|++.++|+.+..+|++..-..-    .       + .. .-++|+-+-     
T Consensus       450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~  529 (659)
T KOG0060|consen  450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAED  529 (659)
T ss_pred             eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCcccc
Confidence            3567999999999999999999999999999999998788877543221    1       1 01 112222110     


Q ss_pred             -----------------------cccC-CCC--e-eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHH
Q psy2881         150 -----------------------GKYN-DVP--V-ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRE  202 (302)
Q Consensus       150 -----------------------~~~~-~~~--~-~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~  202 (302)
                                             ..+. |..  . +.-..-..+.+..+-++||.+.++|++.+|||.|..- ...+-..
T Consensus       530 ~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv-~~dvE~~  608 (659)
T KOG0060|consen  530 MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAV-TEDVEGA  608 (659)
T ss_pred             ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhc-cHHHHHH
Confidence                                   0000 000  0 0000112234445556899999999999999998322 2234455


Q ss_pred             HHHHHHHhchhhccccce
Q psy2881         203 LKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd  220 (302)
                      +-+..++.|.|.+-++|-
T Consensus       609 ~Yr~~r~~giT~iSVgHR  626 (659)
T KOG0060|consen  609 LYRKCREMGITFISVGHR  626 (659)
T ss_pred             HHHHHHHcCCeEEEeccH
Confidence            666666678887777763

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.92  E-value=1.2e-08  Score=80.73  Aligned_cols=88  Identities=27%  Similarity=0.259  Sum_probs=53.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      +..+.|+||+|+||||+++.|+..+......+.+...+........+..      ....................++++.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~   75 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR   75 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999998866544555555443222111110      0011111111223334445566666


Q ss_pred             hCCCCeEEEcCCCC
Q psy2881         179 KKNTDIVIVDTSGR  192 (302)
Q Consensus       179 ~~~~~llllDEP~d  192 (302)
                      ...|++|++||+..
T Consensus        76 ~~~~~viiiDei~~   89 (148)
T smart00382       76 KLKPDVLILDEITS   89 (148)
T ss_pred             hcCCCEEEEECCcc
Confidence            66789999999983

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.91  E-value=1.2e-08  Score=90.03  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHH-HHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC-------CCCeee---cCCC
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTI-GKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN-------DVPVIS---EKKI  163 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll-~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~-------~~~~~~---~~~~  163 (302)
                      .+++|++++++||||+||||++ +.+++..++ +.++.+...+.......+++..++-..       .+.+..   ....
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~   98 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSG   98 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccC
Confidence            4688999999999999999995 666766554 445555554444333334433222111       010111   0111


Q ss_pred             C-CHHHHHHHHHHHHHhCCCCeEEEcCCC-------CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         164 T-DPAAIAFNAINIAQKKNTDIVIVDTSG-------RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       164 ~-~~~~~~~~~la~al~~~~~llllDEP~-------d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      . +........+...-..+|+++++|||+       |+.....+++.++.+.+. +.++ +.+|+...
T Consensus        99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tv-i~t~~~~~  164 (230)
T PRK08533         99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVI-ILTANPKE  164 (230)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEE-EEEecccc
Confidence            1 111122222333334589999999997       222345677777777554 5544 55666543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.89  E-value=8.8e-08  Score=88.62  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=65.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---hHH----HHHHHhcccCCCCeeecCC---CCCH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---AAY----EQLLILGKYNDVPVISEKK---ITDP  166 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---~~~----~ql~~~~~~~~~~~~~~~~---~~~~  166 (302)
                      .++-+++|.||+||||||++..|...+...+.+|.+.+.|+...   ++.    ..+..+....++-......   ....
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~  133 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV  133 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence            35679999999999999999999999998888999999998532   111    1122222222211111111   1123


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCCccch
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQ  196 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~d~~~~  196 (302)
                      .....+++...-..++|++|+|++|..++.
T Consensus       134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~  163 (332)
T PRK09435        134 ARKTRETMLLCEAAGYDVILVETVGVGQSE  163 (332)
T ss_pred             HHHHHHHHHHHhccCCCEEEEECCCCccch
Confidence            345556666666788999999999955443

>KOG0062|consensus

Probab=98.89  E-value=2.5e-09  Score=101.59  Aligned_cols=130  Identities=16%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-------------hhHH------------HHH
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-------------AAAY------------EQL  146 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-------------~~~~------------~ql  146 (302)
                      +++..+--..++++|+||.||||+++++.+-+.|..|-+.+...--..             .+++            +.+
T Consensus       383 ~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~  462 (582)
T KOG0062|consen  383 LGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEI  462 (582)
T ss_pred             cCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHH
Confidence            333444445789999999999999999999999988877765532100             0000            111


Q ss_pred             HHhcccCCCCe------eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccc
Q psy2881         147 LILGKYNDVPV------ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFEL  217 (302)
Q Consensus       147 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~  217 (302)
                      +.....+|++-      +...++.   +..+-++|.+...+|.+|+|||||   |..+-..+-..|+.+    +..++++
T Consensus       463 r~hl~~~Gl~g~la~~si~~LSGG---QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~V  535 (582)
T KOG0062|consen  463 RRHLGSFGLSGELALQSIASLSGG---QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLV  535 (582)
T ss_pred             HHHHHhcCCCchhhhccccccCCc---chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEE
Confidence            11111222221      1112222   233445788888999999999999   555444444444443    4578899


Q ss_pred             cceeehhhcCC
Q psy2881         218 PYEIFLIIDGN  228 (302)
Q Consensus       218 ~hd~~lvl~~~  228 (302)
                      |||..++-..+
T Consensus       536 SHd~~fi~~~c  546 (582)
T KOG0062|consen  536 SHDEEFISSLC  546 (582)
T ss_pred             ECcHHHHhhcC
Confidence            99988765544

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.87  E-value=1.1e-08  Score=92.67  Aligned_cols=49  Identities=8%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             HHHHHHh--C--CCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         173 AINIAQK--K--NTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       173 ~la~al~--~--~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .++++.+  .  +|+++++|||+   |+.....+++.|.++.+  +.++++++|+...
T Consensus       180 ~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~  235 (276)
T cd03241         180 MLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV  235 (276)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH
Confidence            3555433  2  99999999997   88888889999988754  5789999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.86  E-value=9.6e-09  Score=95.94  Aligned_cols=107  Identities=18%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCCHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITDPAAIAFNAI  174 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  174 (302)
                      .++.++.|.||+|||||||++.+.+.+.+ .+++|.....+.-      ..  +..  ....+.. ..+.+. ....+++
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E------~~--~~~--~~~~i~q~evg~~~-~~~~~~l  188 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE------YV--HRN--KRSLINQREVGLDT-LSFANAL  188 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh------hh--ccC--ccceEEccccCCCC-cCHHHHH
Confidence            45679999999999999999999997764 4677777654321      11  000  0111111 111111 1123557


Q ss_pred             HHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         175 NIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       175 a~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      ++++-++||+|++||+.|..+....   +. .+ ..|..++.+.|
T Consensus       189 ~~~lr~~pd~i~vgEird~~~~~~~---l~-aa-~tGh~v~~T~H  228 (343)
T TIGR01420       189 RAALREDPDVILIGEMRDLETVELA---LT-AA-ETGHLVFGTLH  228 (343)
T ss_pred             HHhhccCCCEEEEeCCCCHHHHHHH---HH-HH-HcCCcEEEEEc
Confidence            8888999999999999876554322   22 22 23555555556

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>smart00053 DYNc Dynamin, GTPase

Probab=98.81  E-value=2.8e-08  Score=87.96  Aligned_cols=163  Identities=18%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNA  173 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      +..+ .++++||+||||||+++.|+|.  ++...|.+.   ..+.+.....+...|+.....+.   ....+.. .+.+.
T Consensus        24 i~~p-~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t---~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~~-~v~~~   95 (240)
T smart00053       24 LDLP-QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLILQLINSSTEYAEFLHCKG---KKFTDFD-EVRNE   95 (240)
T ss_pred             CCCC-eEEEEcCCCccHHHHHHHHhCCCccccCCCccc---ccceEEEccCCCCcceEEEecCC---cccCCHH-HHHHH
Confidence            3445 5889999999999999999997  444456443   22222222212122332222211   1111222 22222


Q ss_pred             HHHHH---h------------------CCCCeEEEcCCCCcc----c-hHHHHHHHHHHHHHhchhhcccccee-ehhhc
Q psy2881         174 INIAQ---K------------------KNTDIVIVDTSGRLS----T-QSHLMRELKKIKKVIEKKIFELPYEI-FLIID  226 (302)
Q Consensus       174 la~al---~------------------~~~~llllDEP~d~~----~-~~~l~~~L~~l~~~~~~~i~~~~hd~-~lvl~  226 (302)
                      |..+.   .                  .-|++.|+|+||-..    . ...+.+.+.++....    +-.++++ .+|++
T Consensus        96 i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y----i~~~~~IIL~Vvd  171 (240)
T smart00053       96 IEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF----ISKEECLILAVTP  171 (240)
T ss_pred             HHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH----HhCccCeEEEEEE
Confidence            22211   1                  128999999999221    1 123334444433321    1113333 34444


Q ss_pred             CCCCh--hH-HHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHh
Q psy2881         227 GNTGQ--NT-LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY  270 (302)
Q Consensus       227 ~~~g~--~~-~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~  270 (302)
                      +..+.  .. ..-++.+...-...-.|+||.|....+..+++++..-
T Consensus       172 a~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~  218 (240)
T smart00053      172 ANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENK  218 (240)
T ss_pred             CCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCC
Confidence            54433  23 3334455433333345999999987766676666553

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.79  E-value=3.3e-08  Score=85.98  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             HHHHHHHhCCCCeEEEcCCC--------CccchHHHHHHHHHHHH
Q psy2881         172 NAINIAQKKNTDIVIVDTSG--------RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~--------d~~~~~~l~~~L~~l~~  208 (302)
                      ..||++++.+|+++++|||+        |+.....+++.++++++
T Consensus       161 ~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        161 LWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            34899999999999999997        66777788888888754

>PRK13695 putative NTPase; Provisional

Probab=98.78  E-value=2.4e-08  Score=84.19  Aligned_cols=120  Identities=18%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHH--H-HHh-cc-----cCCC-Cee-ecCCCCCH--
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQ--L-LIL-GK-----YNDV-PVI-SEKKITDP--  166 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~q--l-~~~-~~-----~~~~-~~~-~~~~~~~~--  166 (302)
                      .++|+|++|+||||+++.+++.+.+.+-.+. +...+.........  + ... ..     ..+. ... ......+.  
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg   81 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED   81 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence            4789999999999999999998776332221 22111100000000  0 000 00     0000 000 00000011  


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCC-CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSG-RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~-d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      .......+.+....+|+++++|||+ ........++.+.++. ..+.++++++|+.
T Consensus        82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~  136 (174)
T PRK13695         82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR  136 (174)
T ss_pred             HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch
Confidence            1112222333445789999999987 2233455777888777 4577888888963

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.78  E-value=3.8e-08  Score=93.38  Aligned_cols=138  Identities=17%  Similarity=0.214  Sum_probs=97.9

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHH----HHHhcccC-C--------
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQ----LLILGKYN-D--------  154 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~q----l~~~~~~~-~--------  154 (302)
                      ++++||++..|||++|.|..|-|-+.|+..|+|+.++.+|+|.+.|.|. .+.+..+.    +.+.++.. +        
T Consensus       274 v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~s  353 (501)
T COG3845         274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLS  353 (501)
T ss_pred             eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCcc
Confidence            5689999999999999999999999999999999988889999999996 43333221    11111110 0        


Q ss_pred             ------------CCeeecCCCCCHHHHHH------------------------------HHHHHHHhCCCCeEEEcCCC-
Q psy2881         155 ------------VPVISEKKITDPAAIAF------------------------------NAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       155 ------------~~~~~~~~~~~~~~~~~------------------------------~~la~al~~~~~llllDEP~-  191 (302)
                                  -|+.... -.+......                              -.++|-+..+|++|++-.|| 
T Consensus       354 l~eN~vL~~~~~~~~~~~g-~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr  432 (501)
T COG3845         354 LAENLVLGRHDKKPFSRGG-FLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR  432 (501)
T ss_pred             HHHHhhhhhcccccccccc-ccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence                        0011100 011111000                              01889999999999999998 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                        |....+.+.+.|.+.++. |+.++++|.|+..++.-+
T Consensus       433 GLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~ls  470 (501)
T COG3845         433 GLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELS  470 (501)
T ss_pred             cccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhh
Confidence              888888899999888764 888888888777655544

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.72  E-value=5.6e-08  Score=93.12  Aligned_cols=51  Identities=22%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+++++ +++.+|++++|+|+||+|||||++.|++...++.|.|.+.|....
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~  197 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGR  197 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCc
Confidence            367888 999999999999999999999999999999999999999887654

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.72  E-value=1.3e-07  Score=83.74  Aligned_cols=124  Identities=14%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH------------hhhCCCeEEEecccCCChhHHHHHHHhcccCCC-----Ceeec-
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY------------FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDV-----PVISE-  160 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~------------~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~-----~~~~~-  160 (302)
                      |.+..|+||.|+||||++-.+|--            ..+..|+|.+.+.+-......+.+..+....+.     ..+.. 
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~   80 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS   80 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence            567889999999999999998753            234578888877654433333344443332210     01100 


Q ss_pred             --------CC-C-CCHHHHHHHHHHHHHhCCCCeEEEcCCC--------CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         161 --------KK-I-TDPAAIAFNAINIAQKKNTDIVIVDTSG--------RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       161 --------~~-~-~~~~~~~~~~la~al~~~~~llllDEP~--------d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                              .. . ..........+..+...+|++|++|...        |+.....+++.|.++++..+.++++++|..-
T Consensus        81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125          81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence                    00 0 0011122222333446899999999431        4445566888888888888889999999654

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.71  E-value=1.7e-07  Score=82.79  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC-------CCCeeecC------C
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN-------DVPVISEK------K  162 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~-------~~~~~~~~------~  162 (302)
                      +++|.++.+.|++||||||+...++.-....++++.+.+.+-......+++..+.-..       .+.++...      .
T Consensus        22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~  101 (234)
T PRK06067         22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN  101 (234)
T ss_pred             CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence            5789999999999999999999986554456889999887644333333333322110       01111110      0


Q ss_pred             CCCHHHHHHHHHHHHH-hCCCCeEEEcCCC---CccchHHHHHH---HHHHHHHhchhhcccccee
Q psy2881         163 ITDPAAIAFNAINIAQ-KKNTDIVIVDTSG---RLSTQSHLMRE---LKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       163 ~~~~~~~~~~~la~al-~~~~~llllDEP~---d~~~~~~l~~~---L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..... .....+.... ..+|+++++|+|+   +......+.+.   ++.+.+ .+.++++++|+.
T Consensus       102 ~~~~~-~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~  165 (234)
T PRK06067        102 STLAN-KLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPY  165 (234)
T ss_pred             cchHH-HHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Confidence            01111 1222222222 2489999999998   43333333333   444443 366777777753

>KOG0064|consensus

Probab=98.69  E-value=1.8e-08  Score=96.07  Aligned_cols=134  Identities=11%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE--------EecccCCC--hhHH---------HHH---
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL--------LAACDTFR--AAAY---------EQL---  146 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~--------l~~~d~~~--~~~~---------~ql---  146 (302)
                      ...++|.+++|--+.|+||||||||+++++|+|+.+-..|...        +.-+.+|-  ...+         +|.   
T Consensus       498 v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~k  577 (728)
T KOG0064|consen  498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRK  577 (728)
T ss_pred             ecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhc
Confidence            4567899999999999999999999999999999886666433        33222220  0001         111   


Q ss_pred             ----------------HHhcccCC-CCeeecCC-CCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHH
Q psy2881         147 ----------------LILGKYND-VPVISEKK-ITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKK  208 (302)
Q Consensus       147 ----------------~~~~~~~~-~~~~~~~~-~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~  208 (302)
                                      .+..++.+ ........ -..-.+..+-.+||.+-++|++.++||.|..-+ ..+-..+-+.++
T Consensus       578 g~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvs-idvE~~i~~~ak  656 (728)
T KOG0064|consen  578 GYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVS-IDVEGKIFQAAK  656 (728)
T ss_pred             CCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccc-cchHHHHHHHHH
Confidence                            11111111 00000000 000112223348899999999999999982111 112233444455


Q ss_pred             Hhchhhccccceeeh
Q psy2881         209 VIEKKIFELPYEIFL  223 (302)
Q Consensus       209 ~~~~~i~~~~hd~~l  223 (302)
                      ..|.+.+-++|...+
T Consensus       657 ~~gi~llsithrpsl  671 (728)
T KOG0064|consen  657 DAGISLLSITHRPSL  671 (728)
T ss_pred             hcCceEEEeecCccH
Confidence            567777778886543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.68  E-value=1.3e-07  Score=80.08  Aligned_cols=122  Identities=16%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc------CC-CCeeecCCC-CCHH-----
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY------ND-VPVISEKKI-TDPA-----  167 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~------~~-~~~~~~~~~-~~~~-----  167 (302)
                      ++.|.||+|+||||+...++......+.++.+.+.+.......++...++-.      .+ ..+...... ....     
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~   80 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR   80 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence            3678999999999999988776666778888887654322222222222110      01 111111000 0000     


Q ss_pred             -HHHHHHHHHHHhCCCCeEEEcCCC---C---ccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         168 -AIAFNAINIAQKKNTDIVIVDTSG---R---LSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       168 -~~~~~~la~al~~~~~llllDEP~---d---~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                       .........+...+|+++++|+|+   |   ......+.+.+..+.+ .+.++++++|+...
T Consensus        81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~  142 (187)
T cd01124          81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL  142 (187)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence             111222333456789999999997   4   3334555666666654 37788888886543

A related protein is found in archaea.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.67  E-value=8.6e-08  Score=91.50  Aligned_cols=103  Identities=19%  Similarity=0.326  Sum_probs=76.1

Q ss_pred             HHHHH--HHHHHHHCCCChHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHhhccC-CCcc----eec-CCCeE
Q psy2881          32 NLYNE--LESDLLKADVGFETTQFLLNELKKIIY--SKKLFNTEQVRNVLHNLLVNLLKSLE-KPLI----FKK-CKPFV  101 (302)
Q Consensus        32 ~~~~~--l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~l-~~i~----l~~-~~g~i  101 (302)
                      ..|++  |.+.|+++||++++|.+|++.+++.+.  +......+.++..+.+.+.+.+.+.. +..+    +.- .++.+
T Consensus       178 ~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p~v  257 (475)
T PRK12337        178 VPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRPLH  257 (475)
T ss_pred             CCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCCeE
Confidence            45666  999999999999999999999999884  33445778888888877777654321 1111    111 35789


Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++.|+||+||||++..||..+..    ..+...|..
T Consensus       258 il~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~i  290 (475)
T PRK12337        258 VLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAV  290 (475)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHH
Confidence            999999999999999999987643    235556653

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.66  E-value=1.5e-07  Score=79.06  Aligned_cols=125  Identities=16%  Similarity=0.123  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEec-ccCCChhHHHHHHH-hcccCCCCeeecCC-------------
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAA-CDTFRAAAYEQLLI-LGKYNDVPVISEKK-------------  162 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~-~d~~~~~~~~ql~~-~~~~~~~~~~~~~~-------------  162 (302)
                      -|+.|+|.||||||||+-.||....  +.+|.=-+.+ .|....+....++. +.......++....             
T Consensus        38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~  117 (233)
T COG3910          38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD  117 (233)
T ss_pred             ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence            4899999999999999999987654  3333221111 11111111122221 11111122211100             


Q ss_pred             ------CCC-----HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         163 ------ITD-----PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       163 ------~~~-----~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                            +.+     ..+.....+.+.+ .+.-+.|||||-   .+..+..++..|.++++. |.-++++||...+..-
T Consensus       118 ~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAi  193 (233)
T COG3910         118 GEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAI  193 (233)
T ss_pred             hhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeC
Confidence                  000     0111122244443 456899999995   666677788888888765 6678899998776543

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.60  E-value=5.4e-08  Score=99.73  Aligned_cols=180  Identities=18%  Similarity=0.145  Sum_probs=86.0

Q ss_pred             ceecC-CCeEEEEEcCCCCCHHHHHHHHHhHh-hhCCC-eEEEecccCCChhHHHHHHHhcccCCCC-eeec-CCCCCHH
Q psy2881          93 IFKKC-KPFVIMIVGVNGVGKTTTIGKLANYF-KKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVP-VISE-KKITDPA  167 (302)
Q Consensus        93 ~l~~~-~g~ii~lvGpnGsGKTTll~~Lag~~-~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~-~~~~~~~  167 (302)
                      ++.+. .+.++.|.|||++||||+++.++... -.+.| -|-..  ...+.+..+++  +. ..+.. .... .+.....
T Consensus       320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~--~~~~i~~~~~i--~~-~ig~~~si~~~lStfS~~  394 (782)
T PRK00409        320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAN--EPSEIPVFKEI--FA-DIGDEQSIEQSLSTFSGH  394 (782)
T ss_pred             eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccC--CCccccccceE--EE-ecCCccchhhchhHHHHH
Confidence            44443 34688999999999999999997552 23333 22211  00011111110  00 00100 0000 0000001


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH-HHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHH-
Q psy2881         168 AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE-LKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFS-  241 (302)
Q Consensus       168 ~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~-L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~-  241 (302)
                      ......+.+++ .+|.++|+|||+   |+.....+... +..+.+ .+.+++++||+..+...+..... +... ..|. 
T Consensus       395 m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~~~~~~~~~-v~~~~~~~d~  471 (782)
T PRK00409        395 MTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELKALMYNREG-VENASVEFDE  471 (782)
T ss_pred             HHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhcCCC-eEEEEEEEec
Confidence            11111233333 689999999997   77666666544 445543 47788999998776543322111 0000 0000 


Q ss_pred             hhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCC
Q psy2881         242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI  283 (302)
Q Consensus       242 ~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v  283 (302)
                      +.+.+..-+   ..+...-..++.++..+|+|-..+...+.+
T Consensus       472 ~~l~~~Ykl---~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~  510 (782)
T PRK00409        472 ETLRPTYRL---LIGIPGKSNAFEIAKRLGLPENIIEEAKKL  510 (782)
T ss_pred             CcCcEEEEE---eeCCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence            000010111   112222234788899999997665555444

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=98.58  E-value=2.9e-07  Score=78.44  Aligned_cols=124  Identities=22%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhh----------CCCeEEEecccCCChhHHHHHHHhcccCC-----------
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKK----------RKKSVLLAACDTFRAAAYEQLLILGKYND-----------  154 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~----------~~g~V~l~~~d~~~~~~~~ql~~~~~~~~-----------  154 (302)
                      +.+|+++.|.||.|+||||++.-++..+..          ..++|.+.+.+.......+.+....+...           
T Consensus        29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~  108 (193)
T PF13481_consen   29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS  108 (193)
T ss_dssp             E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence            468999999999999999999988876653          56789998877543222222222111110           


Q ss_pred             ----CCeeecCCCCCHHHHHHHHHHHHHh--CCCCeEEEcCCC-----Cc---cchHHHHHHHHHHHHHhchhhccccc
Q psy2881         155 ----VPVISEKKITDPAAIAFNAINIAQK--KNTDIVIVDTSG-----RL---STQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       155 ----~~~~~~~~~~~~~~~~~~~la~al~--~~~~llllDEP~-----d~---~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                          ..++.............+.+.+.+.  .+|++|++|.-.     +.   .....++..|+++++..+.+++++.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H  187 (193)
T PF13481_consen  109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHH  187 (193)
T ss_dssp             -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEE
T ss_pred             ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence                0111111100001111222334333  479999999764     11   11246889999998888888776666

>PTZ00035 Rad51 protein; Provisional

Probab=98.58  E-value=1.6e-06  Score=80.65  Aligned_cols=174  Identities=12%  Similarity=0.074  Sum_probs=93.1

Q ss_pred             HHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHH
Q psy2881          40 DLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTT  115 (302)
Q Consensus        40 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTl  115 (302)
                      .....|++...|++|++..++.... ...+..++.+.- .. ...+..-...++    =-+++|+++.|.||+||||||+
T Consensus        58 L~~~~gis~~~~~~i~~~~~~~~~~-~~~ta~~~~~~~-~~-~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l  134 (337)
T PTZ00035         58 LCNIKGISEAKVEKIKEAASKLVPM-GFISATEYLEAR-KN-IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQL  134 (337)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccc-CCCCHHHHHHhh-cc-CccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHH
Confidence            3345899999999999988876543 223333332210 00 011222111121    1367899999999999999999


Q ss_pred             HHHHHhHhh-h-----CCCeE-EEecccCCChhHHHHHHHhcccCCCC--------eeecCCCCC-HHHHHHHHHHHHHh
Q psy2881         116 IGKLANYFK-K-----RKKSV-LLAACDTFRAAAYEQLLILGKYNDVP--------VISEKKITD-PAAIAFNAINIAQK  179 (302)
Q Consensus       116 l~~Lag~~~-~-----~~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~la~al~  179 (302)
                      +..++.... |     .+|++ ++.+...++.....   .+++..++.        .+......+ ..............
T Consensus       135 ~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~---~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~  211 (337)
T PTZ00035        135 CHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV---QIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAE  211 (337)
T ss_pred             HHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH---HHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhc
Confidence            999987665 4     46777 55555555443322   223332221        111111111 11111111111123


Q ss_pred             CCCCeEEEcCCC---C--ccc-------h---HHHHHHHHHHHHHhchhhccccc
Q psy2881         180 KNTDIVIVDTSG---R--LST-------Q---SHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       180 ~~~~llllDEP~---d--~~~-------~---~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .++++|++|.-+   +  ...       +   .+++..|+++++..+.+++++.|
T Consensus       212 ~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNq  266 (337)
T PTZ00035        212 ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQ  266 (337)
T ss_pred             cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecc
Confidence            578999999864   2  110       1   13455566676677777766655

>PRK09183 transposase/IS protein; Provisional

Probab=98.57  E-value=2.6e-07  Score=82.92  Aligned_cols=45  Identities=24%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +..++| +.+|+.++|+||+|+||||++..|+......+.+|.+..
T Consensus        93 L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~  137 (259)
T PRK09183         93 LRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT  137 (259)
T ss_pred             HhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            345566 788999999999999999999999887767777887764

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.56  E-value=5.5e-07  Score=84.79  Aligned_cols=116  Identities=22%  Similarity=0.208  Sum_probs=74.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFNA  173 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~~  173 (302)
                      +.+|+++.|.|++|+||||++..++..+...+++|.+...+-.    .+|+...++++++..  +......+.. .+   
T Consensus        79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~~l~l~~e~~le-~I---  150 (372)
T cd01121          79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTENLYLLAETNLE-DI---  150 (372)
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcccEEEEccCcHH-HH---
Confidence            5789999999999999999999999988887788877654321    234444444444321  1111111221 12   


Q ss_pred             HHHHHhCCCCeEEEcCCC-----C----c---cchHHHHHHHHHHHHHhchhhccccc
Q psy2881         174 INIAQKKNTDIVIVDTSG-----R----L---STQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       174 la~al~~~~~llllDEP~-----d----~---~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      ++.....+|++|++|+-.     +    +   .....++..|.++++..+.+++++.|
T Consensus       151 ~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh  208 (372)
T cd01121         151 LASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH  208 (372)
T ss_pred             HHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            222334689999999952     1    1   11234556677888887888877777

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>KOG0063|consensus

Probab=98.55  E-value=2e-07  Score=87.16  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             CCcceecCCC-----eEEEEEcCCCCCHHHHHHHHHhHhhhCCC------eEEEecccC--CChhHHHHH---HHhcccC
Q psy2881          90 KPLIFKKCKP-----FVIMIVGVNGVGKTTTIGKLANYFKKRKK------SVLLAACDT--FRAAAYEQL---LILGKYN  153 (302)
Q Consensus        90 ~~i~l~~~~g-----~ii~lvGpnGsGKTTll~~Lag~~~~~~g------~V~l~~~d~--~~~~~~~ql---~~~~~~~  153 (302)
                      .+..+.+..|     +++..+|.||.||||+++++||.++|+.|      +|.+-.+.+  .+.+.+.|+   +.+...+
T Consensus       353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~  432 (592)
T KOG0063|consen  353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYM  432 (592)
T ss_pred             eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhc
Confidence            3445555444     68999999999999999999999998865      444433222  123333332   1222222


Q ss_pred             CCCeeecC--------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcc
Q psy2881         154 DVPVISEK--------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFE  216 (302)
Q Consensus       154 ~~~~~~~~--------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~  216 (302)
                      +..+....              ....-.+..+-+++.++-...++.++|||.   |...+..--..++++.=..+++-.+
T Consensus       433 ~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafv  512 (592)
T KOG0063|consen  433 HPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFV  512 (592)
T ss_pred             CHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhh
Confidence            21111000              000111222334777778889999999997   6554444444555554445677778


Q ss_pred             ccceeeh
Q psy2881         217 LPYEIFL  223 (302)
Q Consensus       217 ~~hd~~l  223 (302)
                      +.||...
T Consensus       513 VEhdfIm  519 (592)
T KOG0063|consen  513 VEHDFIM  519 (592)
T ss_pred             hhhHHHH
Confidence            8888654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.53  E-value=2e-07  Score=82.07  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE-ecccCCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL-AACDTFR  139 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l-~~~d~~~  139 (302)
                      .++.+++|.||||||||||++.|++.+++.+|.+.+ ...|-+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~   74 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH   74 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence            567899999999999999999999999999998666 5555443

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.52  E-value=1.2e-06  Score=78.81  Aligned_cols=50  Identities=22%  Similarity=0.137  Sum_probs=40.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDT  137 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~  137 (302)
                      .++.+.--+.+|+++.|.||+|+||||++..++...... +.+|.+...+.
T Consensus        19 ~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~   69 (271)
T cd01122          19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE   69 (271)
T ss_pred             eeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence            345554557899999999999999999999998877655 77898887654

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.47  E-value=2.1e-07  Score=84.66  Aligned_cols=43  Identities=33%  Similarity=0.454  Sum_probs=38.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFR  139 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~  139 (302)
                      +.+.++||.|||||||||++++|.+++.  |.+|+|.+.+.|-+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            4568999999999999999999999998  678899999988764

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.46  E-value=6.5e-07  Score=71.39  Aligned_cols=92  Identities=21%  Similarity=0.280  Sum_probs=54.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA  177 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a  177 (302)
                      .+..+.|+||+|+||||+++.++..+...+..+.+................  ...               .........
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~   80 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF--GHF---------------LVRLLFELA   80 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh--hhh---------------hHhHHHHhh
Confidence            466899999999999999999999887666777776554322211110000  000               000112234


Q ss_pred             HhCCCCeEEEcCCCCc--cchHHHHHHHHHH
Q psy2881         178 QKKNTDIVIVDTSGRL--STQSHLMRELKKI  206 (302)
Q Consensus       178 l~~~~~llllDEP~d~--~~~~~l~~~L~~l  206 (302)
                      ...++.++++||....  .....+.+.+...
T Consensus        81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~  111 (151)
T cd00009          81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETL  111 (151)
T ss_pred             ccCCCeEEEEeChhhhhHHHHHHHHHHHHhc
Confidence            5567899999999733  2333444444443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.46  E-value=9.9e-07  Score=84.17  Aligned_cols=50  Identities=22%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++. .+++.+|+.++|+|++|+||||+++.|++..+++.|.|.+.|....
T Consensus       146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~  195 (432)
T PRK06793        146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR  195 (432)
T ss_pred             EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc
Confidence            4555 4899999999999999999999999999999998898888876643

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.46  E-value=2e-07  Score=101.43  Aligned_cols=52  Identities=12%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             HHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         174 INIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       174 la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ||..+..+   +.+++||||+   ++.....+++.|.++.+. |.|++++.||..++-.
T Consensus      1710 La~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635       1710 IAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred             HHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh
Confidence            67766654   6899999997   777778899999998764 7899999998776544

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.45  E-value=3.1e-07  Score=82.95  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++.++.+.+| +.+|+|||||||||++..|.-+.
T Consensus        13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~   45 (270)
T cd03242          13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLA   45 (270)
T ss_pred             ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhc
Confidence            3456666655 78899999999999999987655

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01394 radB RadB

Probab=98.44  E-value=3.9e-06  Score=73.11  Aligned_cols=123  Identities=16%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh-cccCCCCeeecCCCCCHHHH--HHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL-GKYNDVPVISEKKITDPAAI--AFN  172 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~-~~~~~~~~~~~~~~~~~~~~--~~~  172 (302)
                      +.+|.++.|.|++||||||++..++......++++.+.+.+-......+++... .+.....++... ..+..+.  ...
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   94 (218)
T cd01394          16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFE-PMDFNEQGRAIQ   94 (218)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEe-CCCHHHHHHHHH
Confidence            578999999999999999999999988777788888876553221222222111 111111122211 1122111  111


Q ss_pred             HHHHHHhCCCCeEEEcCCCC-----ccc-------h---HHHHHHHHHHHHHhchhhccccc
Q psy2881         173 AINIAQKKNTDIVIVDTSGR-----LST-------Q---SHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~d-----~~~-------~---~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .+......+++++++|.-+.     ...       .   ..++..|+.+++..+.+++++.|
T Consensus        95 ~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q  156 (218)
T cd01394          95 ETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQ  156 (218)
T ss_pred             HHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecC
Confidence            22222334699999998751     111       1   12334456777777777777766

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR00416 sms DNA repair protein RadA

Probab=98.43  E-value=1.3e-06  Score=84.42  Aligned_cols=118  Identities=19%  Similarity=0.185  Sum_probs=74.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFNA  173 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~~  173 (302)
                      +.+|+++.|.|++|+||||++..++....+.+++|.+...+-.    .+|+...+.++++..  +......+..    ..
T Consensus        91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~~l~~~~e~~~~----~I  162 (454)
T TIGR00416        91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEPNLYVLSETNWE----QI  162 (454)
T ss_pred             ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChHHeEEcCCCCHH----HH
Confidence            5789999999999999999999999888777778766654321    234443334444321  1111112222    11


Q ss_pred             HHHHHhCCCCeEEEcCCC-----C-------ccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         174 INIAQKKNTDIVIVDTSG-----R-------LSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       174 la~al~~~~~llllDEP~-----d-------~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ++.....+|+++++|.-.     +       .....+.+..|.++++..+.++++++|..
T Consensus       163 ~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvt  222 (454)
T TIGR00416       163 CANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVT  222 (454)
T ss_pred             HHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence            222334689999999653     1       11123455678888888899999888843

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.43  E-value=3.4e-07  Score=82.20  Aligned_cols=87  Identities=23%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHH---HHHHHH-
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAA---IAFNAI-  174 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~---~~~~~l-  174 (302)
                      +.++.|+||+|+||||+++.++..+.+.  .+.+...........+.+.......+++..    ..+...   ...+.+ 
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~----~~~~~~~~~~l~~~l~  116 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLETE----GRDKAALLRELEDFLI  116 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHHH
Confidence            4489999999999999999999887753  333322211122333444455555555421    112111   111212 


Q ss_pred             HHHHhCCCCeEEEcCCC
Q psy2881         175 NIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       175 a~al~~~~~llllDEP~  191 (302)
                      ......++.++++||.-
T Consensus       117 ~~~~~~~~~vliiDe~~  133 (269)
T TIGR03015       117 EQFAAGKRALLVVDEAQ  133 (269)
T ss_pred             HHHhCCCCeEEEEECcc
Confidence            22334667799999985

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.41  E-value=5.2e-06  Score=68.92  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      ++.++|++||||||+++.+.....  +.++.+.-.+
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~   35 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENE   35 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecC
Confidence            678999999999999999887643  3345554333

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.40  E-value=2.4e-06  Score=75.15  Aligned_cols=120  Identities=20%  Similarity=0.218  Sum_probs=65.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh-hhC------CCeEEEecccCCChhHHHHHHHhcccCC---------CCeee
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF-KKR------KKSVLLAACDTFRAAAYEQLLILGKYND---------VPVIS  159 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~-~~~------~g~V~l~~~d~~~~~~~~ql~~~~~~~~---------~~~~~  159 (302)
                      +++|+++.|.||+|+||||++..++... .+.      .+-+++.+.+.+...   .+....+..+         +.+..
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~---rl~~~~~~~~~~~~~~~~~i~~~~   92 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE---RLVQIAERFGLDPEEVLDNIYVAR   92 (235)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHH---HHHHHHHHhccChHhHhcCEEEEe
Confidence            5789999999999999999999998653 343      444555544443322   1211111111         11111


Q ss_pred             cCCCCCHHHHHHHHHHHH-HhC-CCCeEEEcCCC---C----cc----ch----HHHHHHHHHHHHHhchhhccccc
Q psy2881         160 EKKITDPAAIAFNAINIA-QKK-NTDIVIVDTSG---R----LS----TQ----SHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       160 ~~~~~~~~~~~~~~la~a-l~~-~~~llllDEP~---d----~~----~~----~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .....+..... ..+... ... ++++|++|.-+   .    ..    ..    ..++..|+++++..+.+++++.|
T Consensus        93 ~~~~~~l~~~l-~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~  168 (235)
T cd01123          93 AYNSDHQLQLL-EELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ  168 (235)
T ss_pred             cCCHHHHHHHH-HHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence            11111111111 112222 234 79999999875   1    11    11    24566677777777888776665

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PLN03210 Resistant to P

Probab=98.40  E-value=1.8e-06  Score=92.71  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             ChHHHHHHHHHHHHC-----------CCChHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHhhccCCCcceec
Q psy2881          30 DKNLYNELESDLLKA-----------DVGFETTQFLLNELKKIIYSKKLFNTEQVR--NVLHNLLVNLLKSLEKPLIFKK   96 (302)
Q Consensus        30 ~~~~~~~l~~~L~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~l~~i~l~~   96 (302)
                      +++...+|+++|.+.           +-..+..++|++.+.+.+......+.+.+.  +.-.+.+...+       ++..
T Consensus       132 ~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL-------~l~~  204 (1153)
T PLN03210        132 TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLL-------HLES  204 (1153)
T ss_pred             chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHH-------cccc
Confidence            456677888888643           223455677777777766432211211111  11112233332       3455


Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEec
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAA  134 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~  134 (302)
                      .++++++|+||+|+||||+++.+++.+.. ..|.+.+.+
T Consensus       205 ~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~  243 (1153)
T PLN03210        205 EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR  243 (1153)
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence            67899999999999999999999877654 478887754

syringae 6; Provisional

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.40  E-value=2.5e-05  Score=70.29  Aligned_cols=100  Identities=25%  Similarity=0.270  Sum_probs=69.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-------hHHHHHHHhcccCCCCeeecCCCC---CH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-------AAYEQLLILGKYNDVPVISEKKIT---DP  166 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-------~~~~ql~~~~~~~~~~~~~~~~~~---~~  166 (302)
                      ....+++|.|+.||||||++-.|...+...+.+|.+...|+.+.       +.+-.+.......++-+....+..   ..
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            44579999999999999999999999998899999999997642       112222233333343333332222   23


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCCccch
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQ  196 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~d~~~~  196 (302)
                      .....++++.+-+..+|+||+-|.|--++.
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQse  158 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSE  158 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcch
Confidence            344556677778899999999999854444

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.39  E-value=2.5e-07  Score=73.64  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFN  172 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (302)
                      .+.++.|.||+|+||||+++.++..+...     ...+.+....... ....-...+.+..+.+...   ..... ...+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~-~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSD-ELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HH-HHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHH-HHHH
Confidence            46789999999999999999999988652     3445544433322 1222223333333332222   11222 2234


Q ss_pred             HHHHHHhCCC-CeEEEcCCCCccchHHHHHHHHHHHHH
Q psy2881         173 AINIAQKKNT-DIVIVDTSGRLSTQSHLMRELKKIKKV  209 (302)
Q Consensus       173 ~la~al~~~~-~llllDEP~d~~~~~~l~~~L~~l~~~  209 (302)
                      .+.+.+.+.. .+|++||.-... ....++.|+.+.+.
T Consensus        78 ~~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~~  114 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLNE  114 (131)
T ss_dssp             HHHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHhC
Confidence            4444454444 499999995332 46777777777553

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.39  E-value=4.4e-06  Score=73.19  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh--cccC-CCCeeecCCCCCHHH--HH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL--GKYN-DVPVISEKKITDPAA--IA  170 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~--~~~~-~~~~~~~~~~~~~~~--~~  170 (302)
                      +++|.++.|.||+|+||||++..++......++++.+.+.+.+......++..-  .+.. ++.++..   .+...  ..
T Consensus        20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   96 (225)
T PRK09361         20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEP---SSFEEQSEA   96 (225)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeC---CCHHHHHHH
Confidence            578999999999999999999999877666678888888773322222222211  1111 1111111   12211  11


Q ss_pred             HHHHHHHHhCCCCeEEEcCCC---Cc-----cc----h---HHHHHHHHHHHHHhchhhccccc
Q psy2881         171 FNAINIAQKKNTDIVIVDTSG---RL-----ST----Q---SHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       171 ~~~la~al~~~~~llllDEP~---d~-----~~----~---~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .+.+...+..+++++++|.-+   ..     ..    .   ..++..|.++++..+.+++++.|
T Consensus        97 i~~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq  160 (225)
T PRK09361         97 IRKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ  160 (225)
T ss_pred             HHHHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence            122222222789999999864   11     11    1   12233466666777877777666

>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.39  E-value=1.1e-06  Score=63.50  Aligned_cols=72  Identities=36%  Similarity=0.557  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHH-hhh-cCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHH
Q psy2881           9 LKESLSKTACNLKS-LIV-NKKIDKNLYNELESDLLKADVGFETTQFLLNELKK-IIYSKKLFNTEQVRNVLHNLL   81 (302)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l   81 (302)
                      |+++++++++++.+ .|. ++.+ ++++++|++.|+++||++++|.+|++.+++ ........+.+.+..++++.|
T Consensus         1 L~~~l~kt~~~l~~~~~~~~~~i-~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~~~~~~~~~~v~~~l~~~L   75 (75)
T PF02881_consen    1 LKKGLSKTFKKLSGSIFLTEKDI-EEFLEELEEALIEADVGVEVAEKIIENIKKKLIKKKGINPREEVKKALKEEL   75 (75)
T ss_dssp             HHHHHHHHHHHHHCCSSCTHHHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhCcccccHHhH-HHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHC
Confidence            56778888777775 333 3457 889999999999999999999999999999 555445556688888887764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.38  E-value=2e-06  Score=76.09  Aligned_cols=139  Identities=22%  Similarity=0.302  Sum_probs=78.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---hH----HHHHHHhcccCCCCeeecCCCCCHH---
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---AA----YEQLLILGKYNDVPVISEKKITDPA---  167 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---~~----~~ql~~~~~~~~~~~~~~~~~~~~~---  167 (302)
                      +..+++|.||.|+|||||+..|...+...+.+|.+...|+...   ++    +-.+..+....++-+..........   
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            4579999999999999999999999998889999999987532   11    1122233334444344443333332   


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh--hHHHH-HHHHHhhc
Q psy2881         168 AIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ--NTLSQ-IKEFSKIL  244 (302)
Q Consensus       168 ~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~--~~~~~-~~~f~~~~  244 (302)
                      ....+++..+-+.++|+||+-|.|--++...+       .        -..|-..+|+..+.|.  +.+.. .-.+    
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I-------~--------~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----  168 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI-------A--------DMADTVVLVLVPGLGDEIQAIKAGIMEI----  168 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH-------H--------TTSSEEEEEEESSTCCCCCTB-TTHHHH----
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH-------H--------HhcCeEEEEecCCCccHHHHHhhhhhhh----
Confidence            33445565566789999999999854443322       1        1234455566666554  22221 1122    


Q ss_pred             CCCeEEEecCCC
Q psy2881         245 RITGLIITKLDG  256 (302)
Q Consensus       245 ~~~~~i~tk~d~  256 (302)
                       .|.+++||.|.
T Consensus       169 -aDi~vVNKaD~  179 (266)
T PF03308_consen  169 -ADIFVVNKADR  179 (266)
T ss_dssp             --SEEEEE--SH
T ss_pred             -ccEEEEeCCCh
Confidence             27899999993

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.38  E-value=9.8e-07  Score=82.75  Aligned_cols=91  Identities=11%  Similarity=0.160  Sum_probs=52.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--C-CeEEEecccCCChhHHHHHHHhcccCCCCeeecC-CCCCHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR--K-KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-KITDPAAIAFN  172 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~-g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-~~~~~~~~~~~  172 (302)
                      .++..++|+||||||||||++.|++.+.+.  . ++|... .|+..... +   .+...  ...+.+. .+.+. .....
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~-EdpiE~~~-~---~~~~~--~~~v~Q~~v~~~~-~~~~~  203 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY-EAPIEFVY-D---EIETI--SASVCQSEIPRHL-NNFAA  203 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe-CCCceEec-c---ccccc--cceeeeeeccccc-cCHHH
Confidence            467899999999999999999999998532  3 355444 44422111 0   01000  0111111 01010 11223


Q ss_pred             HHHHHHhCCCCeEEEcCCCCccc
Q psy2881         173 AINIAQKKNTDIVIVDTSGRLST  195 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~d~~~  195 (302)
                      ++..++-++||++++.|--|..+
T Consensus       204 ~l~~aLR~~Pd~i~vGEiRd~et  226 (358)
T TIGR02524       204 GVRNALRRKPHAILVGEARDAET  226 (358)
T ss_pred             HHHHHhccCCCEEeeeeeCCHHH
Confidence            35557778999999999766543

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.37  E-value=4.8e-06  Score=73.08  Aligned_cols=125  Identities=15%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhc-------ccCCCCeeecC------
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG-------KYNDVPVISEK------  161 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~-------~~~~~~~~~~~------  161 (302)
                      -+++|+++.|.||+|+||||++..++......+.++.+.+.+.......++...++       ....+.+....      
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~   95 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKED   95 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence            36789999999999999999998776432233556666654432211111111111       00011111100      


Q ss_pred             ----CCCCHHHHHHHHHHHHHh---CCCCeEEEcCCC----Ccc-chHHHHHHHHHHHHHhchhhccccce
Q psy2881         162 ----KITDPAAIAFNAINIAQK---KNTDIVIVDTSG----RLS-TQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       162 ----~~~~~~~~~~~~la~al~---~~~~llllDEP~----d~~-~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                          ...+..... ..+..+..   .+++.+++|.++    +.+ ....++..|..+.+..+.++++++|.
T Consensus        96 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~  165 (229)
T TIGR03881        96 EWSLRELSIEELL-NKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY  165 (229)
T ss_pred             ccccccCCHHHHH-HHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence                011222211 11222221   257899999986    222 22344455666666678888888884

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00235 udk uridine kinase

Probab=98.37  E-value=4.1e-07  Score=78.87  Aligned_cols=40  Identities=30%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ++|.+++|+|||||||||+++.|++++.+  +.+.+...|.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~   43 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY   43 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence            67999999999999999999999999875  45555566554

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.36  E-value=4.8e-06  Score=72.79  Aligned_cols=126  Identities=20%  Similarity=0.168  Sum_probs=66.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC------CeEEEec-ccCCChhHHHHH-HHhccc-----CCCCeeecCC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK------KSVLLAA-CDTFRAAAYEQL-LILGKY-----NDVPVISEKK  162 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~------g~V~l~~-~d~~~~~~~~ql-~~~~~~-----~~~~~~~~~~  162 (302)
                      +++|+++.|.||+|+||||++..++......+      +.+.+.+ .+.+......++ ..+...     .++.+.....
T Consensus        16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~   95 (226)
T cd01393          16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN   95 (226)
T ss_pred             CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence            57899999999999999999999988754332      4555544 443332221111 111111     0111121111


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---C---cc-----c----hHHHHHHHHHHHHHhchhhcccccee
Q psy2881         163 ITDPAAIAFNAINIAQKKNTDIVIVDTSG---R---LS-----T----QSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       163 ~~~~~~~~~~~la~al~~~~~llllDEP~---d---~~-----~----~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..+........+......++++|++|.-+   .   ..     .    -..++..|+++++..+.+++++.|-.
T Consensus        96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~  169 (226)
T cd01393          96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR  169 (226)
T ss_pred             HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence            11111111111111123588999999864   1   11     1    12345567777777788887777643

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.36  E-value=4.5e-06  Score=72.21  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH-HHhccc--CCCCeeecCCCCCHHHH--H
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL-LILGKY--NDVPVISEKKITDPAAI--A  170 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql-~~~~~~--~~~~~~~~~~~~~~~~~--~  170 (302)
                      +++|.++.|.||+||||||++-.++......++++.+.+.+-+......++ ..+.+.  .++.++..   .+....  .
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~   85 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEV---FDFDEQGVA   85 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEEC---CCHHHHHHH
Confidence            578999999999999999999888876655667788777653322222221 111111  11212221   121111  1


Q ss_pred             HHHHHH-HHhCCCCeEEEcCCC---C--ccc-----h---HHHHHHHHHHHHHhchhhccccc
Q psy2881         171 FNAINI-AQKKNTDIVIVDTSG---R--LST-----Q---SHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       171 ~~~la~-al~~~~~llllDEP~---d--~~~-----~---~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      ...+.. +-..+|++|++|.-.   +  ...     .   ..++..|.++++..+.+++++.|
T Consensus        86 ~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~  148 (209)
T TIGR02237        86 IQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ  148 (209)
T ss_pred             HHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            111222 222379999999864   1  111     1   12334466666777777777766

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PHA02518 ParA-like protein; Provisional

Probab=98.35  E-value=8.2e-06  Score=70.35  Aligned_cols=85  Identities=21%  Similarity=0.271  Sum_probs=52.6

Q ss_pred             EEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881         101 VIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK  179 (302)
Q Consensus       101 ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~  179 (302)
                      ++++.+ -.|+||||+...||..+...+.+|.+.+.|++.....  +...... +.+.+.....   .....+.+.. +.
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~--~~~~~~~-~~~~i~~~~~---~~~~~~~l~~-~~   74 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD--WAEAREE-GEPLIPVVRM---GKSIRADLPK-VA   74 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHH--HHHhccc-CCCCCchhhc---cHHHHHHHHH-Hh
Confidence            577776 5579999999999999998889999999998754331  1111110 1111111100   0112223333 45


Q ss_pred             CCCCeEEEcCCCC
Q psy2881         180 KNTDIVIVDTSGR  192 (302)
Q Consensus       180 ~~~~llllDEP~d  192 (302)
                      .++|++|+|+|+.
T Consensus        75 ~~~d~viiD~p~~   87 (211)
T PHA02518         75 SGYDYVVVDGAPQ   87 (211)
T ss_pred             ccCCEEEEeCCCC
Confidence            7899999999974

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.34  E-value=2.5e-06  Score=78.70  Aligned_cols=50  Identities=22%  Similarity=0.143  Sum_probs=44.6

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++.+ +.+.+|+.++|+|+||+|||||+++|++...++.|.+.+.|.+..
T Consensus        59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~  108 (326)
T cd01136          59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGR  108 (326)
T ss_pred             EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCc
Confidence            67777 999999999999999999999999999999998888888876644

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.33  E-value=4.1e-06  Score=80.94  Aligned_cols=116  Identities=17%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFNA  173 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~~  173 (302)
                      +.+|+++.|.|++|+||||++..++......+++|.+....-.    .+|+...+++++...  +......+..    +.
T Consensus        77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees----~~qi~~ra~rlg~~~~~l~~~~e~~l~----~i  148 (446)
T PRK11823         77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES----ASQIKLRAERLGLPSDNLYLLAETNLE----AI  148 (446)
T ss_pred             ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc----HHHHHHHHHHcCCChhcEEEeCCCCHH----HH
Confidence            5689999999999999999999999887766778777654321    234443344444311  1111112222    12


Q ss_pred             HHHHHhCCCCeEEEcCCC---C------ccc---hHHHHHHHHHHHHHhchhhccccc
Q psy2881         174 INIAQKKNTDIVIVDTSG---R------LST---QSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       174 la~al~~~~~llllDEP~---d------~~~---~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      +......+|+++++|+..   .      +..   ...++..|.++++..+.+++++.|
T Consensus       149 ~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~h  206 (446)
T PRK11823        149 LATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGH  206 (446)
T ss_pred             HHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence            222234689999999974   1      111   224555677787777888888777

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.33  E-value=5.3e-07  Score=90.11  Aligned_cols=53  Identities=11%  Similarity=0.216  Sum_probs=39.7

Q ss_pred             HHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         174 INIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       174 la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      ||.-|...   .-+.||||||   -.+..+.+++.|.++.+. |.|++++.|++..+-.+
T Consensus       833 LA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLdVIk~A  891 (935)
T COG0178         833 LAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLDVIKTA  891 (935)
T ss_pred             HHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccceEeec
Confidence            66555544   4899999997   445566799999999874 88999999987765443

>PRK13768 GTPase; Provisional

Probab=98.30  E-value=6.3e-06  Score=73.77  Aligned_cols=39  Identities=23%  Similarity=0.509  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .++.+.||.||||||++..++..+...+.+|.+.+.|+.
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~   41 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA   41 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence            478899999999999999999999887888999888764

>KOG0065|consensus

Probab=98.30  E-value=4e-07  Score=95.22  Aligned_cols=132  Identities=13%  Similarity=0.103  Sum_probs=87.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh---CCCeEEEecccCCChhHHHHHHHhccc-CCCCeee---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK---RKKSVLLAACDTFRAAAYEQLLILGKY-NDVPVIS---  159 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~---~~g~V~l~~~d~~~~~~~~ql~~~~~~-~~~~~~~---  159 (302)
                      .+++|++.-+++|+++.++||.||||||+++.++|-...   ..|+|.++|.+...........+.++. ..+|...   
T Consensus       129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre  208 (1391)
T KOG0065|consen  129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE  208 (1391)
T ss_pred             eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence            478899999999999999999999999999999998763   346899999876422111111111110 0111000   


Q ss_pred             ----------c---CCCCCHHHH---HHH--------------------------------HHHHHHhCCCCeEEEcCCC
Q psy2881         160 ----------E---KKITDPAAI---AFN--------------------------------AINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       160 ----------~---~~~~~~~~~---~~~--------------------------------~la~al~~~~~llllDEP~  191 (302)
                                .   ....+..+.   ..+                                .++.+++.++.+++.||++
T Consensus       209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t  288 (1391)
T KOG0065|consen  209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT  288 (1391)
T ss_pred             hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence                      0   000111110   001                                1667788999999999997


Q ss_pred             ---CccchHHHHHHHHHHHHHhchhhcccc
Q psy2881         192 ---RLSTQSHLMRELKKIKKVIEKKIFELP  218 (302)
Q Consensus       192 ---d~~~~~~l~~~L~~l~~~~~~~i~~~~  218 (302)
                         |..+.-++.+.|+++++..+.+.+++-
T Consensus       289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi  318 (1391)
T KOG0065|consen  289 RGLDSSTAFQIIKALRQLAHITGATALVSI  318 (1391)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhcceEEEEe
Confidence               889999999999999987776665543

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.29  E-value=3.2e-06  Score=80.87  Aligned_cols=50  Identities=22%  Similarity=0.135  Sum_probs=42.4

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++.++ ++.+|+.++|+||+|+|||||++.|+++..|+.|.|.+.|.+-.
T Consensus       155 aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergr  204 (450)
T PRK06002        155 VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGR  204 (450)
T ss_pred             Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCc
Confidence            455553 78999999999999999999999999999999898888765433

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.28  E-value=7.9e-07  Score=77.91  Aligned_cols=38  Identities=34%  Similarity=0.450  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~  138 (302)
                      +++|.|||||||||+++.|++.+.+  .+++|.+...|-+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            5899999999999999999999975  5678888777755

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.27  E-value=3e-06  Score=77.09  Aligned_cols=99  Identities=20%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHhhccCCC-cce-----ecCCCeEEEEEcCC
Q psy2881          37 LESDLLKADVGFETTQFLLNELKKIIYSKK--LFNTEQVRNVLHNLLVNLLKSLEKP-LIF-----KKCKPFVIMIVGVN  108 (302)
Q Consensus        37 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~l~~~l~~-i~l-----~~~~g~ii~lvGpn  108 (302)
                      |-+.|..+|+++..|-++...+.+.+..+.  ..+.+++.+.+.+.|.+.....+.. ..+     .-+.+-++.|.|++
T Consensus        22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G~s  101 (301)
T PRK04220         22 LARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGGAS  101 (301)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            567888999999999999999999887664  3467788888888877766433221 111     11356789999999


Q ss_pred             CCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881         109 GVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus       109 GsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      ||||||+...||..+   +.. .+.+.|..|
T Consensus       102 gsGKStlA~~La~~l---~~~-~vi~~D~~r  128 (301)
T PRK04220        102 GVGTSTIAFELASRL---GIR-SVIGTDSIR  128 (301)
T ss_pred             CCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence            999999999999887   333 345577654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
2yhs_A	503	Structure Of The E. Coli Srp Receptor Ftsy Length =		6e-63
2qy9_A	309	Structure Of The Ng+1 Construct Of The E. Coli Srp		7e-63
2xxa_B	302	The Crystal Structure Of The Signal Recognition Par		1e-62
1fts_A	295	Signal Recognition Particle Receptor From E. Coli L		6e-61
4ak9_A	318	Structure Of Chloroplast Ftsy From Physcomitrella P		3e-47
1vma_A	306	Crystal Structure Of Cell Division Protein Ftsy (Tm		2e-45
2og2_A	359	Crystal Structure Of Chloroplast Ftsy From Arabidop		3e-45
3b9q_A	302	The Crystal Structure Of Cpftsy From Arabidopsis Th		3e-45
2q9a_A	304	Structure Of Apo Ftsy Length = 304		2e-38
2cnw_D	284	Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy Len		2e-38
2j7p_D	283	Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpa		2e-38
1okk_D	303	Homo-Heterodimeric Complex Of The Srp Gtpases Lengt		2e-38
1zu4_A	320	Crystal Structure Of Ftsy From Mycoplasma Mycoides-		3e-38
1rj9_A	304	Structure Of The Heterodimer Of The Conserved Gtpas		4e-37
3dmd_B	328	Structures And Conformations In Solution Of The Sig		1e-35
3dm9_B	328	Structures And Conformations In Solution Of The Sig		2e-33
3dm5_A	443	Structures Of Srp54 And Srp19, The Two Proteins Ass		6e-32
1qzw_A	440	Crystal Structure Of The Complete Core Of Archaeal		2e-31
3kl4_A	433	Recognition Of A Signal Peptide By The Signal Recog		2e-31
2v3c_C	432	Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna C		6e-31
3ndb_B	454	Crystal Structure Of A Signal Sequence Bound To The		7e-31
1rj9_B	300	Structure Of The Heterodimer Of The Conserved Gtpas		2e-29
2ng1_A	293	N And Gtpase Domains Of The Signal Sequence Recogni		2e-29
1ffh_A	294	N And Gtpase Domains Of The Signal Sequence Recogni		2e-29
2c03_A	297	Gdp Complex Of Srp Gtpase Ffh Ng Domain Length = 29		2e-29
2ffh_A	425	The Signal Sequence Binding Protein Ffh From Thermu		3e-29
3ng1_A	294	N And Gtpase Domains Of The Signal Sequence Recogni		3e-29
2iy3_A	432	Structure Of The E. Coli Signal Recognition Particl		4e-29
1o87_A	297	A New Mggdp Complex Of The Ffh Ng Domain Length = 2		4e-29
1jpj_A	296	Gmppnp Complex Of Srp Gtpase Ng Domain Length = 296		4e-29
1ls1_A	295	T. Aquaticus Ffh Ng Domain At 1.1a Resolution Lengt		4e-29
2j37_W	504	Model Of Mammalian Srp Bound To 80s Rncs Length = 5		7e-27
1j8m_F	297	Signal Recognition Particle Conserved Gtpase Domain		7e-26
2xxa_A	433	The Crystal Structure Of The Signal Recognition Par		9e-26
2j28_9	430	Model Of E. Coli Srp Bound To 70s Rncs Length = 430		1e-25
1j8y_F	297	Signal Recognition Particle Conserved Gtpase Domain		2e-25
2px0_A	296	Crystal Structure Of Flhf Complexed With GmppnpMG(2		7e-08

>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy Length = 503

Iteration: 1
 Score =  237 bits (605), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 186/302 (61%), Gaps = 4/302 (1%)
Query: 2   KINWITRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K  +  RLK SL KT  NL S    L   KKID +L+ ELE  LL ADVG ETT+ ++  
Sbjct: 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251
Query: 58  LKKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
           L +    K+L + E                +++PL  +   PFVI++VGVNGVGKTTTIG
Sbjct: 252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311
Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXX 177
           KLA  F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++    D            
Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371
Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQI 237
           + +N D++I DT+GRL  +SHLM EL            E P+E+ L ID +TGQN +SQ 
Sbjct: 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431
Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
           K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct: 432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491
Query: 298 LL 299
           L 
Sbjct: 492 LF 493

>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp Receptor Ftsy Length = 309

Iteration: 1
 Score =  237 bits (604), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 133/297 (44%), Positives = 184/297 (61%), Gaps = 4/297 (1%)
Query: 7   TRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
            RLK SL KT  NL S    L   KKID +L+ ELE  LL ADVG ETT+ ++  L +  
Sbjct: 3   ARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGA 62
Query: 63  YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
             K+L + E                +++PL  +   PFVI++VGVNGVGKTTTIGKLA  
Sbjct: 63  SRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 122
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
           F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++    D            + +N 
Sbjct: 123 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 182
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
           D++I DT+GRL  +SHLM EL            E P+E+ L ID +TGQN +SQ K F +
Sbjct: 183 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 242
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ AL 
Sbjct: 243 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 299

>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 302

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/297 (44%), Positives = 184/297 (61%), Gaps = 4/297 (1%)
Query: 7   TRLKESLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
            RLK SL KT  NL S    L   KKID +L+ ELE  LL ADVG ETT+ ++  L +  
Sbjct: 2   ARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGA 61
Query: 63  YSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
             K+L + E                +++PL  +   PFVI++VGVNGVGKTTTIGKLA  
Sbjct: 62  SRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 121
Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNT 182
           F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++    D            + +N 
Sbjct: 122 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 181
Query: 183 DIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
           D++I DT+GRL  +SHLM EL            E P+E+ L ID +TGQN +SQ K F +
Sbjct: 182 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 241
Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ AL 
Sbjct: 242 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 298

>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli Length = 295

Iteration: 1
 Score =  230 bits (587), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 130/292 (44%), Positives = 181/292 (61%), Gaps = 4/292 (1%)
Query: 12  SLSKTACNLKS----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL 67
           SL KT  NL S    L   KKID +L+ ELE  LL ADVG ETT+ ++  L +    K+L
Sbjct: 2   SLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQL 61
Query: 68  FNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
            + E                +++PL  +   PFVI++VGVNGVGKTTTIGKLA  F+++ 
Sbjct: 62  RDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG 121
Query: 128 KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIV 187
           KSV+LAA DTFRAAA EQL + G+ N++PVI++    D            + +N D++I 
Sbjct: 122 KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIA 181
Query: 188 DTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRIT 247
           DT+GRL  +SHLM EL            E P+E+ L ID +TGQN +SQ K F + + +T
Sbjct: 182 DTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 241
Query: 248 GLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
           G+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ AL 
Sbjct: 242 GITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 293

>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens Length = 318

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/272 (38%), Positives = 156/272 (57%), Gaps = 3/272 (1%)
Query: 31  KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQXXXXXXXX--XXXXXKSL 88
           +++ +ELE  LL +D G +T   +++ ++K I + +L +  Q               +  
Sbjct: 46  ESILDELEEVLLVSDFGPKTALKIVDTIRKDILAGRLKSGPQIKEALKKNIFKLLTERVT 105
Query: 89  EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148
              L     +P V+MIVGVNG GKTTT+GKLAN FKK    VL+AA DTFRAAA EQL +
Sbjct: 106 TTELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEV 165
Query: 149 LGKYNDVP-VISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXX 207
             +      V++E     P            +++ D+V+ DTSGRL T  +LM EL    
Sbjct: 166 WAQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCK 225
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIA 267
                     P E+ L++DG TG N L+Q +EF++++ +TG I+TKLDGT +GG + ++ 
Sbjct: 226 RAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVV 285
Query: 268 KKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            + SIP+ F+G+GE I+DLQ F+A  FV+AL 
Sbjct: 286 DELSIPVKFVGVGEGIDDLQPFDAQSFVDALF 317

>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570) From Thermotoga Maritima At 1.60 A Resolution Length = 306

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/308 (41%), Positives = 168/308 (54%), Gaps = 35/308 (11%)
Query: 9   LKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNEL------ 58
           LK+ L KT       +  L+  KK+D     ELE  L++ADVG ETT+++L  L      
Sbjct: 19  LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 78
Query: 59  -----KKIIYSKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKT 113
                K+II     F+T+                    L      PFVIM+VGVNG GKT
Sbjct: 79  ALESLKEIILEILNFDTK--------------------LNVPPEPPFVIMVVGVNGTGKT 118
Query: 114 TTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXX 173
           T+ GKLA  F    KSV+LAA DTFRAAA EQL I G+     VIS  +  DP       
Sbjct: 119 TSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178
Query: 174 XXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNT 233
                 +N D+VI+DT+GRL T+ +LM EL            + P+E  L+ID  TGQN 
Sbjct: 179 VAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNG 238
Query: 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD 293
           L Q K F + + +TG+I+TKLDGT KGGI  AIA++  IP+ FIG+GEK EDL+ F+   
Sbjct: 239 LVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEA 298
Query: 294 FVNALLNQ 301
           FV  LL++
Sbjct: 299 FVEVLLSE 306

>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis Thaliana Length = 359

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 3/271 (1%)
Query: 33  LYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQ--XXXXXXXXXXXXXKSLEK 90
           + +ELE  LL +D G + T  ++  L++ I S KL +  +               K+ + 
Sbjct: 89  VLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKT 148
Query: 91  PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG 150
            L     KP VIMIVGVNG GKTT++GKLA+  K     VL+AA DTFRAAA +QL I  
Sbjct: 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 208
Query: 151 KYNDVP-VISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
           +      V++E                 +++  D+V+ DTSGRL T   LM EL      
Sbjct: 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKA 268
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
                   P EI L++DGNTG N L Q +EF++++ ITGLI+TKLDG+ +GG + ++ ++
Sbjct: 269 VGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEE 328
Query: 270 YSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             IP+ FIG+GE +EDLQ F+   FVNA+ +
Sbjct: 329 LGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359

>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana Length = 302

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 3/271 (1%)
Query: 33  LYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQ--XXXXXXXXXXXXXKSLEK 90
           + +ELE  LL +D G + T  ++  L++ I S KL +  +               K+ + 
Sbjct: 32  VLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKT 91
Query: 91  PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG 150
            L     KP VIMIVGVNG GKTT++GKLA+  K     VL+AA DTFRAAA +QL I  
Sbjct: 92  ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 151
Query: 151 KYNDVP-VISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
           +      V++E                 +++  D+V+ DTSGRL T   LM EL      
Sbjct: 152 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKA 211
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
                   P EI L++DGNTG N L Q +EF++++ ITGLI+TKLDG+ +GG + ++ ++
Sbjct: 212 VGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEE 271
Query: 270 YSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             IP+ FIG+GE +EDLQ F+   FVNA+ +
Sbjct: 272 LGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302

>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy Length = 304

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
           GKTTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PVI   + TDP    
Sbjct: 114 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 173
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
                  + +  D++ VDT+GRL T+ +LM EL            E P E++L++D  TG
Sbjct: 174 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 233
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
           QN L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+G+GE  +DLQ F+
Sbjct: 234 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 293
Query: 291 AVDFVNALLN 300
              FV ALL 
Sbjct: 294 PEAFVEALLE 303

>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy Length = 284

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
           GKTTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PVI   + TDP    
Sbjct: 94  GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 153
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
                  + +  D++ VDT+GRL T+ +LM EL            E P E++L++D  TG
Sbjct: 154 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 213
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
           QN L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+G+GE  +DLQ F+
Sbjct: 214 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 273
Query: 291 AVDFVNALLN 300
              FV ALL 
Sbjct: 274 PEAFVEALLE 283

>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh And Ftsy Length = 283

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
           GKTTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PVI   + TDP    
Sbjct: 93  GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 152
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
                  + +  D++ VDT+GRL T+ +LM EL            E P E++L++D  TG
Sbjct: 153 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 212
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
           QN L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+G+GE  +DLQ F+
Sbjct: 213 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 272
Query: 291 AVDFVNALLN 300
              FV ALL 
Sbjct: 273 PEAFVEALLE 282

>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases Length = 303

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 111/190 (58%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
           GKTTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PVI   + TDP    
Sbjct: 113 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA 172
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
                  + +  D++ VDT+GRL T+ +LM EL            E P E++L++D  TG
Sbjct: 173 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 232
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
           QN L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+G+GE  +DLQ F+
Sbjct: 233 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 292
Query: 291 AVDFVNALLN 300
              FV ALL 
Sbjct: 293 PEAFVEALLE 302

>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space Group P21212 Length = 320

Iteration: 1
 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 94  FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY- 152
           FK+ +  + M+VGVNG GKTT++ K+ANY+ +    VL+AA DTFRA A +QL    K  
Sbjct: 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTR 159
Query: 153 --NDVPVISEKKI-TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXX 209
             N V ++   K+  DP           +++N D++++DT+GRL  +++LM EL      
Sbjct: 160 LNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKI 219
Query: 210 XXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKK 269
                   P+E+ L+ID  TGQN + Q +EFSK+  ++G+I+TK+D T+KGGI  AI + 
Sbjct: 220 IQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKEL 279
Query: 270 YSIPLYFIGIGEKIEDLQIFN 290
            +IP+  IG+GEK++DL  F+
Sbjct: 280 LNIPIKMIGVGEKVDDLLAFD 300

>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase Domains Signal Recognition Particle (Ffh) And Its Receptor (Ftsy) Length = 304

Iteration: 1
 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 110/190 (57%)
Query: 111 GKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXX 170
           GKTTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PVI   + TD     
Sbjct: 114 GKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALA 173
Query: 171 XXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTG 230
                  + +  D++ VDT+GRL T+ +LM EL            E P E++L++D  TG
Sbjct: 174 YDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 233
Query: 231 QNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
           QN L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+G+GE  +DLQ F+
Sbjct: 234 QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFD 293
Query: 291 AVDFVNALLN 300
              FV ALL 
Sbjct: 294 PEAFVEALLE 303

>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus Length = 328

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 24  IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL-FNTEQXXXXXXXXXX 82
           I  K +DK L +ELE DLL+ADV  E    L  ++K+ +  KK+   T++          
Sbjct: 47  IKEKDVDKAL-DELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 105
Query: 83  XXXKSLEKPL-------IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
              + LE          I K  KP+VIM VG NG GKTTTI KLAN+ K    SV++AA 
Sbjct: 106 AVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
           DTFRA A EQL    K   V VI      DP           + +  D+V++DT+GR  T
Sbjct: 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSET 225
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
             +LM E+              P  +  + D   G   + Q ++F++ ++I G+I+TKLD
Sbjct: 226 NRNLMDEMKKIARVTK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279
Query: 256 GTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
              +GG   +I+     P+ F+G+G+  +DL+ F    F+  +  + 
Sbjct: 280 ADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326

>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal Recognition Particle Receptor From The Archaeon Pyrococcus Furiosus Length = 328

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 139/287 (48%), Gaps = 15/287 (5%)
Query: 24  IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL-FNTEQXXXXXXXXXX 82
           I  K +DK L +ELE DLL+ADV  E    L  ++K+ +  KK+   T++          
Sbjct: 47  IKEKDVDKAL-DELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 105
Query: 83  XXXKSLEKPL-------IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC 135
              + LE          I K  KP+VI  VG NG GKTTTI KLAN+ K    SV++AA 
Sbjct: 106 AVSEILETSRRIDLIEEIRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165
Query: 136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLST 195
           DTFRA A EQL    K   V VI      DP           + +  D+V++DT+GR  T
Sbjct: 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSET 225
Query: 196 QSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
             +L  E               P  +  + D   G   + Q ++F++ ++I G+I+TKLD
Sbjct: 226 NRNLXDEXKKIARVTK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279
Query: 256 GTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
              +GG   +I+     P+ F+G+G+  +DL+ F    F+  +  + 
Sbjct: 280 ADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326

>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling The Ribonucleic Core Of The Signal Recognition Particle From The Archaeon Pyrococcus Furiosus. Length = 443

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 149/301 (49%), Gaps = 20/301 (6%)
Query: 11  ESLSKTACN-LKSLIVNKKIDKNLYNELESD----LLKADVGFETTQFLLNELKKIIYSK 65
           ++L K   N LK +     +D+ L  EL  D    L++ADV       L  E+++    +
Sbjct: 4   DNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEE 63
Query: 66  K----LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN 121
           K    +   E               +  KP+  K+ KP ++++VG+ G GKTTT+ KLA 
Sbjct: 64  KPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE-KPTILLMVGIQGSGKTTTVAKLAR 122
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLL-ILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
           YF+KR   V +   DT+R  AY QL  +L +Y+ + V    +  D            + K
Sbjct: 123 YFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQEKDAIKLAKEGVDYFKSK 181
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
             DI+IVDT+GR      L+ E+              P+E+ L+IDG  GQ   +Q   F
Sbjct: 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIH------PHEVILVIDGTIGQQAYNQALAF 235
Query: 241 SKILRITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
            +   I  +I+TKLDG+ K GG L+A+A   + P+ FIG GEKI+D++ F+   FV+ LL
Sbjct: 236 KEATPIGSIIVTKLDGSAKGGGALSAVAATGA-PIKFIGTGEKIDDIEPFDPPRFVSRLL 294
Query: 300 N 300
Sbjct: 295 G 295

>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And Implications For Inter-Domain Communication Length = 440

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 107/204 (52%), Gaps = 8/204 (3%)
Query: 99  PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           PF+IM+VGV G GKTTT GKLA ++KKR   V L A D +R AAY+QLL LG    V V 
Sbjct: 104 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 163
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXXXXXXXXXFE 216
            E    +P            K   DI+IVDT+GR     ++ L+ E+             
Sbjct: 164 GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK----- 218
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYF 276
            P ++ L+ID + GQ        F +   I  +IITK+DGT KGG   +        + F
Sbjct: 219 -PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKF 277
Query: 277 IGIGEKIEDLQIFNAVDFVNALLN 300
           IG GEKI++L+ FNA  FV+ +L 
Sbjct: 278 IGTGEKIDELETFNAKRFVSRILG 301

>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition Particle Length = 433

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 107/204 (52%), Gaps = 8/204 (3%)
Query: 99  PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           PF+IM+VGV G GKTTT GKLA ++KKR   V L A D +R AAY+QLL LG    V V 
Sbjct: 97  PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 156
Query: 159 SEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXXXXXXXXXFE 216
            E    +P            K   DI+IVDT+GR     ++ L+ E+             
Sbjct: 157 GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK----- 211
Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYF 276
            P ++ L+ID + GQ        F +   I  +IITK+DGT KGG   +        + F
Sbjct: 212 -PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKF 270
Query: 277 IGIGEKIEDLQIFNAVDFVNALLN 300
           IG GEKI++L+ FNA  FV+ +L 
Sbjct: 271 IGTGEKIDELETFNAKRFVSRILG 294

>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii Length = 432

Iteration: 1
 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 15/302 (4%)
Query: 6   ITRLKESLSKTACNLKSL-IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
           + +L E+L+K    LK+   V+KK+ K +  +++  L++ADV  +    +  E+++    
Sbjct: 1   MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 60
Query: 65  KK----LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
           +K    L   E                  K L     K  VI++VG+ G GKTTT  KLA
Sbjct: 61  EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
            Y +KR     L A DT+R AAYEQL  L +   VP+  ++  T              KK
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
             D++I+DT+GR   +  L+ E+              P EI L+IDG  GQ    Q K F
Sbjct: 181 -ADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAF 233
Query: 241 SKIL-RITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
            + +  I  +I+TKLDG+ K GG L+A+A+  + P+ FIGIGE I+DL+ F+   F++ L
Sbjct: 234 KEAVGEIGSIIVTKLDGSAKGGGALSAVAETKA-PIKFIGIGEGIDDLEPFDPKKFISRL 292
Query: 299 LN 300
           L 
Sbjct: 293 LG 294

>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal Recognition Particle Length = 454

Iteration: 1
 Score =  130 bits (328), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 15/302 (4%)
Query: 6   ITRLKESLSKTACNLKSL-IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
           + +L E+L+K    LK+   V+KK+ K +  +++  L++ADV  +    +  E+++    
Sbjct: 1   MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 60
Query: 65  KK----LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
           +K    L   E                  K L     K  VI++VG+ G GKTTT  KLA
Sbjct: 61  EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKK 180
            Y +KR     L A DT+R AAYEQL  L +   VP+  ++  T              KK
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180
Query: 181 NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEF 240
             D++I+DT+GR   +  L+ E+              P EI L+IDG  GQ    Q K F
Sbjct: 181 -ADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAF 233
Query: 241 SKIL-RITGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNAL 298
            + +  I  +I+TKLDG+ K GG L+A+A+  + P+ FIGIGE I+DL+ F+   F++ L
Sbjct: 234 KEAVGEIGSIIVTKLDGSAKGGGALSAVAETKA-PIKFIGIGEGIDDLEPFDPKKFISRL 292
Query: 299 LN 300
           L 
Sbjct: 293 LG 294

>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase Domains Signal Recognition Particle (Ffh) And Its Receptor (Ftsy) Length = 300

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7   TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
            RL+E++ +     +  I  + +   L  E+   L+ ADV  E T+  +  +++    K+
Sbjct: 7   ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 63
Query: 67  LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
           +  +               ++L++ L  +   P +       +VG+ G GKTTT  KLA 
Sbjct: 64  VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 120
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
           Y+K + +  LL A DT R AA EQL +LG+   VPV+       P           + + 
Sbjct: 121 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 180
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++VDT+GRL     LM EL              P E+ L++D  TGQ  LS  + F 
Sbjct: 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 234
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
           + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ EK E L+ F
Sbjct: 235 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 282

>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 293

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7   TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
            RL+E++ +     +  I  + +   L  E+   L+ ADV  E T+  +  +++    K+
Sbjct: 6   ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 62
Query: 67  LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
           +  +               ++L++ L  +   P +       +VG+ G GKTTT  KLA 
Sbjct: 63  VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 119
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
           Y+K + +  LL A DT R AA EQL +LG+   VPV+       P           + + 
Sbjct: 120 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 179
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++VDT+GRL     LM EL              P E+ L++D  TGQ  LS  + F 
Sbjct: 180 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 233
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
           + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ EK E L+ F
Sbjct: 234 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 281

>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 294

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7   TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
            RL+E++ +     +  I  + +   L  E+   L+ ADV  E T+  +  +++    K+
Sbjct: 6   ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 62
Query: 67  LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
           +  +               ++L++ L  +   P +       +VG+ G GKTTT  KLA 
Sbjct: 63  VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 119
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
           Y+K + +  LL A DT R AA EQL +LG+   VPV+       P           + + 
Sbjct: 120 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 179
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++VDT+GRL     LM EL              P E+ L++D  TGQ  LS  + F 
Sbjct: 180 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 233
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
           + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ EK E L+ F
Sbjct: 234 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 281

>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain Length = 297

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 21/290 (7%)
Query: 7   TRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKK 66
            RL+E++ +     +  I  + +   L  E+   L+ ADV  E T+  +  +++    K+
Sbjct: 7   ARLQEAIGR--LRGRGRITEEDLKATL-REIRRALMDADVNLEVTRDFVERVREEALGKQ 63
Query: 67  LFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFV-----IMIVGVNGVGKTTTIGKLAN 121
           +  +               ++L++ L  +   P +       +VG+ G GKTTT  KLA 
Sbjct: 64  VLES---LTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 120
Query: 122 YFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
           Y+K + +  LL A DT R AA EQL +LG+   VPV+       P           + + 
Sbjct: 121 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA 180
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++VDT+GRL     LM EL              P E+ L++D  TGQ  LS  + F 
Sbjct: 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARAFD 234
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGEKIEDLQIF 289
           + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ EK E L+ F
Sbjct: 235 EKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSEKPEGLEPF 282

>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus Aquaticus Length = 425

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
           +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VPV+     
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
             P           + +  D+++VDT+GRL     LM EL              P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
           ++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
           K E L+ F
Sbjct: 275 KPEGLEPF 282

>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition Protein Ffh From Thermus Aquaticus Length = 294

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
           +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VPV+     
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
             P           + +  D+++VDT+GRL     LM EL              P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
           ++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
           K E L+ F
Sbjct: 275 KPEGLEPF 282

>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound To A Translating Ribosome Length = 432

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
           +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VPV+     
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
             P           + +  D+++VDT+GRL     LM EL              P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
           ++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
           K E L+ F
Sbjct: 275 KPEGLEPF 282

>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain Length = 297

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
           +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VPV+     
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
             P           + +  D+++VDT+GRL     LM EL              P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
           ++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
           K E L+ F
Sbjct: 275 KPEGLEPF 282

>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain Length = 296

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
           +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VPV+     
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
             P           + +  D+++VDT+GRL     LM EL              P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
           ++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
           K E L+ F
Sbjct: 275 KPEGLEPF 282

>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution Length = 295

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 104 IVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKI 163
           +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VPV+     
Sbjct: 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162
Query: 164 TDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFL 223
             P           + +  D+++VDT+GRL     LM EL              P E+ L
Sbjct: 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLL 216
Query: 224 IIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY--SIPLYFIGIGE 281
           ++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA++ ++    P+YF G+ E
Sbjct: 217 VLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AALSARHVTGKPIYFAGVSE 274
Query: 282 KIEDLQIF 289
           K E L+ F
Sbjct: 275 KPEGLEPF 282

>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs Length = 504

Iteration: 1
 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 136/295 (46%), Gaps = 16/295 (5%)
Query: 15  KTACNLKSL----IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNT 70
           K    L+SL    I+N+++   +  E+ + LL+ADV  +  + L   +K  I  +++ + 
Sbjct: 9   KITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASG 68
Query: 71  EQXXXXXXXXXXXXXKSLEKPLIFK----KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR 126
                            L  P +      K K  VIM VG+ G GKTTT  KLA Y++++
Sbjct: 69  LNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128
Query: 127 KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVI 186
                L   DTFRA A++QL        +P        DP           + +N +I+I
Sbjct: 129 GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIII 188
Query: 187 VDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI 246
           VDTSGR   +  L  E+              P  I  ++D + GQ   +Q K F   + +
Sbjct: 189 VDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDV 242
Query: 247 TGLIITKLDGTTK-GGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN 300
             +I+TKLDG  K GG L+A+A   S P+ FIG GE I+D + F    F++ LL 
Sbjct: 243 ASVIVTKLDGHAKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLLG 296

>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From A. Ambivalens Length = 297

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 10/216 (4%)
Query: 90  KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149
           +P +     P+VIM+VGV G GKTTT GKLA ++KK+   V L   D +R AA EQL  L
Sbjct: 89  EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 150 GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXX 207
           G+   VPV  E    D              +  +I+IVDT+GR     ++ L+ E+    
Sbjct: 149 GQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK-GGILAAI 266
                     P E+ L+ID + GQ       +F++  +I  +IITK+DGT K GG L+A+
Sbjct: 209 EAIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAV 262
Query: 267 AKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
           A   +  + FIG GEKI++L++FN   FV  L + +
Sbjct: 263 AATGAT-IKFIGTGEKIDELEVFNPRRFVARLHHHH 297

>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle (Srp) In Complex With Its Receptor(Sr) Length = 433

Iteration: 1
 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 14/289 (4%)
Query: 9   LKESLSKTACNL--KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIY--- 63
           L + LS+T  N+  +  +    + K+   E+   LL+ADV     +  +N +K+      
Sbjct: 5   LTDRLSRTLRNISGRGRLTEDNV-KDTLREVRMALLEADVALPVVREFINRVKEKAVGHE 63
Query: 64  -SKKLFNTEQXXXXXXXXXXXXXKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY 122
            +K L   ++                 + L      P V+++ G+ G GKTT++GKL  +
Sbjct: 64  VNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123
Query: 123 FK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKN 181
            + K KK VL+ + D +R AA +QL  L +   V          P           + K 
Sbjct: 124 LREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKF 183
Query: 182 TDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFS 241
            D+++VDT+GRL     +M E+              P E   ++D  TGQ+  +  K F+
Sbjct: 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAKAFN 237
Query: 242 KILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFN 290
           + L +TG+++TK+DG  +GG   +I      P+ F+G+GEK E L+ F+
Sbjct: 238 EALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286

>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs Length = 430

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 11/265 (4%)
Query: 31  KNLYNELESDLLKADVGFETTQFLLNELKKIIY----SKKLFNTEQXXXXXXXXXXXXXK 86
           K+   E+   LL+ADV     +  +N +K+       +K L   ++              
Sbjct: 27  KDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMG 86
Query: 87  SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQ 145
              + L      P V+++ G+ G GKTT++GKL  + + K KK VL+ + D +R AA +Q
Sbjct: 87  EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 146
Query: 146 LLILGKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGRLSTQSHLMRELXX 205
           L  L +   V          P           + K  D+++VDT+GRL     +M E+  
Sbjct: 147 LETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQ 206
Query: 206 XXXXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAA 265
                       P E   ++D  TGQ+  +  K F++ L +TG+++TK+DG  +GG   +
Sbjct: 207 VHASIN------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 260
Query: 266 IAKKYSIPLYFIGIGEKIEDLQIFN 290
           I      P+ F+G+GEK E L+ F+
Sbjct: 261 IRHITGKPIKFLGVGEKTEALEPFH 285

>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From A. Ambivalens T112a Mutant Length = 297

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 10/216 (4%)
Query: 90  KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL 149
           +P +     P+VIM+VGV G GK TT GKLA ++KK+   V L   D +R AA EQL  L
Sbjct: 89  EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQL 148
Query: 150 GKYNDVPVISEKKITDPXXXXXXXXXXXQKKNTDIVIVDTSGR--LSTQSHLMRELXXXX 207
           G+   VPV  E    D              +  +I+IVDT+GR     ++ L+ E+    
Sbjct: 149 GQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208
Query: 208 XXXXXXXFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTK-GGILAAI 266
                     P E+ L+ID + GQ       +F++  +I  +IITK+DGT K GG L+A+
Sbjct: 209 EAIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAV 262
Query: 267 AKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
           A   +  + FIG GEKI++L++FN   FV  L + +
Sbjct: 263 AATGAT-IKFIGTGEKIDELEVFNPRRFVARLHHHH 297

>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+) Length = 296

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 102 IMIVGVNGVGKTTTIGKLA--NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS 159
           I++ G  G GKTTT+ KLA  +  +K KK +     DT+R AA EQL    +        
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKK-IAFITTDTYRIAAVEQLKTYAEL------- 159
Query: 160 EKKITDPXXXXXXXXXXXQKK----NTDIVIVDTSGRLSTQSHLMRELXXXXXXXXXXXF 215
              +  P           Q K      D V VDT+GR       + EL           F
Sbjct: 160 ---LQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDEL------KETIPF 210
Query: 216 ELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPL 274
           E   + FL++        +  I K FS +  +   I TK+D TT  G +  I  +  I +
Sbjct: 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSV-PVNQYIFTKIDETTSLGSVFNILAESKIGV 269
Query: 275 YFIGIGEKI-EDLQIFNAVDFVNAL 298
            F+  G+ + ED+Q  + + FV  L
Sbjct: 270 GFMTNGQNVPEDIQTVSPLGFVRML 294

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	1e-146
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	1e-134
2og2_A	359	Putative signal recognition particle receptor; nuc	1e-134
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	1e-133
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	1e-133
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	1e-126
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	1e-121
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	6e-95
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	3e-74
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	2e-73
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	8e-71
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	1e-70
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	8e-68
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	2e-66
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	5e-65
2xxa_A	433	Signal recognition particle protein; protein trans	8e-64
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	1e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	7e-04
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	9e-04

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503

 Score =  419 bits (1079), Expect = e-146
 Identities = 146/304 (48%), Positives = 209/304 (68%), Gaps = 4/304 (1%)

Query: 2   KINWITRLKESLSKTACNL----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
           K  +  RLK SL KT  NL     SL   KKID +L+ ELE  LL ADVG ETT+ ++  
Sbjct: 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITN 251

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
           L +    K+L + E +  +L   +  +L  +++PL  +   PFVI++VGVNGVGKTTTIG
Sbjct: 252 LTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIG 311

Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
           KLA  F+++ KSV+LAA DTFRAAA EQL + G+ N++PVI++    D A++ F+AI  A
Sbjct: 312 KLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371

Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
           + +N D++I DT+GRL  +SHLM ELKKI +V++K   E P+E+ L ID +TGQN +SQ 
Sbjct: 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431

Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
           K F + + +TG+ +TKLDGT KGG++ ++A ++ IP+ +IG+GE+IEDL+ F A DF+ A
Sbjct: 432 KLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEA 491

Query: 298 LLNQ 301
           L  +
Sbjct: 492 LFAR 495

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Length = 304

 Score =  382 bits (984), Expect = e-134
 Identities = 122/307 (39%), Positives = 177/307 (57%), Gaps = 19/307 (6%)

Query: 5   WITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYS 64
           +  RLK  L+KT   L   I      + +  ELE  LL ADVG   T+ +L E++     
Sbjct: 3   FFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASG-- 60

Query: 65  KKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKC------------KPFVIMIVGVNGVGK 112
                 + ++  +   LV +L+  E+    +K             K  V+++VGVNGVGK
Sbjct: 61  -----RKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGK 115

Query: 113 TTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFN 172
           TTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PVI   + TD AA+A++
Sbjct: 116 TTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYD 175

Query: 173 AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQN 232
           A+   + +  D++ VDT+GRL T+ +LM ELKK+K+ I K   E P E++L++D  TGQN
Sbjct: 176 AVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN 235

Query: 233 TLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAV 292
            L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+G+GE  +DLQ F+  
Sbjct: 236 GLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPE 295

Query: 293 DFVNALL 299
            FV ALL
Sbjct: 296 AFVEALL 302

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Length = 359

 Score =  383 bits (986), Expect = e-134
 Identities = 119/307 (38%), Positives = 177/307 (57%), Gaps = 8/307 (2%)

Query: 2   KINWITRLKESLSKTACNLKS-----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLN 56
             + + ++    SKT  NL       L  N      + +ELE  LL +D G + T  ++ 
Sbjct: 53  AKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVE 112

Query: 57  ELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKP--LIFKKCKPFVIMIVGVNGVGKTT 114
            L++ I S KL +  ++++ L   ++ +L        L     KP VIMIVGVNG GKTT
Sbjct: 113 RLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTT 172

Query: 115 TIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKITDPAAIAFNA 173
           ++GKLA+  K     VL+AA DTFRAAA +QL I  +      V++E      A +   A
Sbjct: 173 SLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232

Query: 174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT 233
           +   +++  D+V+ DTSGRL T   LM EL   KK + K +   P EI L++DGNTG N 
Sbjct: 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNM 292

Query: 234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD 293
           L Q +EF++++ ITGLI+TKLDG+ +GG + ++ ++  IP+ FIG+GE +EDLQ F+   
Sbjct: 293 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEA 352

Query: 294 FVNALLN 300
           FVNA+ +
Sbjct: 353 FVNAIFS 359

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Length = 306

 Score =  379 bits (977), Expect = e-133
 Identities = 137/304 (45%), Positives = 189/304 (62%), Gaps = 13/304 (4%)

Query: 2   KINWITRLKESLSKT----ACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNE 57
            +     LK+ L KT       +  L+  KK+D     ELE  L++ADVG ETT+++L  
Sbjct: 12  HMGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILER 71

Query: 58  LKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIG 117
           L++                L  +++ +L   +  L      PFVIM+VGVNG GKTT+ G
Sbjct: 72  LEE--------KDGDALESLKEIILEILNF-DTKLNVPPEPPFVIMVVGVNGTGKTTSCG 122

Query: 118 KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA 177
           KLA  F    KSV+LAA DTFRAAA EQL I G+     VIS  +  DPAA+AF+A+  A
Sbjct: 123 KLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182

Query: 178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI 237
             +N D+VI+DT+GRL T+ +LM EL+K+ +V++KKI + P+E  L+ID  TGQN L Q 
Sbjct: 183 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA 242

Query: 238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNA 297
           K F + + +TG+I+TKLDGT KGGI  AIA++  IP+ FIG+GEK EDL+ F+   FV  
Sbjct: 243 KIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEV 302

Query: 298 LLNQ 301
           LL++
Sbjct: 303 LLSE 306

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Length = 302

 Score =  379 bits (975), Expect = e-133
 Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 8/301 (2%)

Query: 8   RLKESLSKTACNLKS-----LIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKII 62
           ++    SKT  NL       L  N      + +ELE  LL +D G + T  ++  L++ I
Sbjct: 2   KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDI 61

Query: 63  YSKKLFNTEQVRNVLHNLLVNLLKSLEKP--LIFKKCKPFVIMIVGVNGVGKTTTIGKLA 120
            S KL +  ++++ L   ++ +L        L     KP VIMIVGVNG GKTT++GKLA
Sbjct: 62  MSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLA 121

Query: 121 NYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKITDPAAIAFNAINIAQK 179
           +  K     VL+AA DTFRAAA +QL I  +      V++E      A +   A+   ++
Sbjct: 122 HRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE 181

Query: 180 KNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKE 239
           +  D+V+ DTSGRL T   LM EL   KK + K +   P EI L++DGNTG N L Q +E
Sbjct: 182 EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQARE 241

Query: 240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
           F++++ ITGLI+TKLDG+ +GG + ++ ++  IP+ FIG+GE +EDLQ F+   FVNA+ 
Sbjct: 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301

Query: 300 N 300
           +
Sbjct: 302 S 302

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Length = 320

 Score =  363 bits (934), Expect = e-126
 Identities = 107/310 (34%), Positives = 183/310 (59%), Gaps = 16/310 (5%)

Query: 4   NWITRLKESLSKTACNLKSLIVN-----KKIDKNLYNELESDLLKADVGFETTQFLLNEL 58
           +    +++++ K+A N    I       K+ D   + ELE  L++ D+G +    + N +
Sbjct: 2   HHHHPMEKAMLKSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLV 61

Query: 59  KKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEK-----PLIFKKCKPFVIMIVGVNGVGKT 113
           +K        + E +++ L   L       +       + FK+ +  + M+VGVNG GKT
Sbjct: 62  RKKTKRDT--SFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKT 119

Query: 114 TTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY---NDVPVISEKKI-TDPAAI 169
           T++ K+ANY+ +    VL+AA DTFRA A +QL    K    N V ++   K+  DPA++
Sbjct: 120 TSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASV 179

Query: 170 AFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNT 229
            F+AI  A+++N D++++DT+GRL  +++LM EL+K+ K+I++     P+E+ L+ID  T
Sbjct: 180 VFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT 239

Query: 230 GQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIF 289
           GQN + Q +EFSK+  ++G+I+TK+D T+KGGI  AI +  +IP+  IG+GEK++DL  F
Sbjct: 240 GQNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 299

Query: 290 NAVDFVNALL 299
           +   ++  L 
Sbjct: 300 DIDQYIVHLS 309

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Length = 328

 Score =  350 bits (899), Expect = e-121
 Identities = 102/318 (32%), Positives = 166/318 (52%), Gaps = 23/318 (7%)

Query: 2   KINWITRLKESLSKTACN---------LKSLIVNKKIDKNLYNELESDLLKADVGFETTQ 52
             +++ R++E + K             + ++ + +K      +ELE DLL+ADV  E   
Sbjct: 15  LKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVD 74

Query: 53  FLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKP--------LIFKKCKPFVIMI 104
            L  ++K+ +  KK+        ++   +   +  + +          I K  KP+VIM 
Sbjct: 75  ALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMF 134

Query: 105 VGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKIT 164
           VG NG GKTTTI KLAN+ K    SV++AA DTFRA A EQL    K   V VI      
Sbjct: 135 VGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA 194

Query: 165 DPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI 224
           DPAA+A++AI  A+ +  D+V++DT+GR  T  +LM E+KKI +V +      P  +  +
Sbjct: 195 DPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------PNLVIFV 248

Query: 225 IDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIE 284
            D   G   + Q ++F++ ++I G+I+TKLD   +GG   +I+     P+ F+G+G+  +
Sbjct: 249 GDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYD 308

Query: 285 DLQIFNAVDFVNALLNQN 302
           DL+ F    F+  +  + 
Sbjct: 309 DLRPFEKEWFLERIFGEE 326

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Length = 296

 Score =  281 bits (721), Expect = 6e-95
 Identities = 64/298 (21%), Positives = 110/298 (36%), Gaps = 20/298 (6%)

Query: 8   RLKESLSKTACNLKSLI----VNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIY 63
           +++E         +  +      + +      + E  L +  +   T    L +L +   
Sbjct: 12  KIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSV 71

Query: 64  SKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN-Y 122
                  E V   L  +L ++L S +K           I++ G  G GKTTT+ KLA   
Sbjct: 72  EAGGLTEENVVGKLQEILCDMLPSADKWQEPIH--SKYIVLFGSTGAGKTTTLAKLAAIS 129

Query: 123 FKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNT 182
             ++ K +     DT+R AA EQL    +    P+       +                 
Sbjct: 130 MLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQA------KELFSEY 183

Query: 183 DIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSK 242
           D V VDT+GR       + ELK+              + FL++        +  I +   
Sbjct: 184 DHVFVDTAGRNFKDPQYIDELKETIPFES------SIQSFLVLSATAKYEDMKHIVKRFS 237

Query: 243 ILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALL 299
            + +   I TK+D TT  G +  I  +  I + F+  G+ + ED+Q  + + FV  L 
Sbjct: 238 SVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLC 295

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Length = 297

 Score =  228 bits (585), Expect = 3e-74
 Identities = 92/261 (35%), Positives = 140/261 (53%), Gaps = 24/261 (9%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           L+ ADV  +    L N++K+ + ++K        E    ++++ L NL    ++P +   
Sbjct: 36  LISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPD 95

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
             P+VIM+VGV G GKTTT GKLA ++KK+   V L   D +R AA EQL  LG+   VP
Sbjct: 96  KIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 155

Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKI 214
           V  E    D   IA   +     +  +I+IVDT+GR     ++ L+ E+K I + I+   
Sbjct: 156 VYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIK--- 212

Query: 215 FELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI-- 272
              P E+ L+ID + GQ       +F++  +I  +IITK+DGT KGG   A+    S   
Sbjct: 213 ---PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG--GAL----SAVA 263

Query: 273 ----PLYFIGIGEKIEDLQIF 289
                + FIG GEKI++L++F
Sbjct: 264 ATGATIKFIGTGEKIDELEVF 284

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score =  232 bits (595), Expect = 2e-73
 Identities = 83/259 (32%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           LL+ADV  +  + L   +K  I  +++ +     + +++ +   LV L+    K     K
Sbjct: 39  LLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTK 98

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
            K  VIM VG+ G GKTTT  KLA Y++++     L   DTFRA A++QL        +P
Sbjct: 99  GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIP 158

Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
                   DP  IA   +   + +N +I+IVDTSGR   +  L  E+ ++   I+     
Sbjct: 159 FYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ----- 213

Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI---- 272
            P  I  ++D + GQ   +Q K F   + +  +I+TKLDG  KGG   A+    S     
Sbjct: 214 -PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGG--GAL----SAVAAT 266

Query: 273 --PLYFIGIGEKIEDLQIF 289
             P+ FIG GE I+D + F
Sbjct: 267 KSPIIFIGTGEHIDDFEPF 285

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Length = 443

 Score =  224 bits (574), Expect = 8e-71
 Identities = 88/255 (34%), Positives = 136/255 (53%), Gaps = 15/255 (5%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           L++ADV       L  E+++    +K        E +  +++  L   L +  KP+  K+
Sbjct: 39  LIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEIKE 98

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
            KP ++++VG+ G GKTTT+ KLA YF+KR   V +   DT+R  AY QL  L     + 
Sbjct: 99  -KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE 157

Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
           V    +  D   +A   ++  + K  DI+IVDT+GR      L+ E+K+I  VI      
Sbjct: 158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH----- 212

Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI--PL 274
            P+E+ L+IDG  GQ   +Q   F +   I  +I+TKLDG+ KGG   A++   +   P+
Sbjct: 213 -PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGG--GALSAVAATGAPI 269

Query: 275 YFIGIGEKIEDLQIF 289
            FIG GEKI+D++ F
Sbjct: 270 KFIGTGEKIDDIEPF 284

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Length = 433

 Score =  223 bits (572), Expect = 1e-70
 Identities = 92/261 (35%), Positives = 140/261 (53%), Gaps = 24/261 (9%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           L+ +DV  +    L  ++K+ +  +K  +     E   +++++ L  L    ++P +   
Sbjct: 35  LISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPT 94

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
             PF+IM+VGV G GKTTT GKLA ++KKR   V L A D +R AAY+QLL LG    V 
Sbjct: 95  KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154

Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKI 214
           V  E    +P  IA   ++I  K   DI+IVDT+GR     ++ L+ E+K++  V++   
Sbjct: 155 VYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--- 211

Query: 215 FELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI-- 272
              P ++ L+ID + GQ        F +   I  +IITK+DGT KGG   A+    S   
Sbjct: 212 ---PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKGG--GAL----SAVV 262

Query: 273 ----PLYFIGIGEKIEDLQIF 289
                + FIG GEKI++L+ F
Sbjct: 263 ATGATIKFIGTGEKIDELETF 283

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Length = 295

 Score =  212 bits (542), Expect = 8e-68
 Identities = 87/259 (33%), Positives = 135/259 (52%), Gaps = 24/259 (9%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           L+ ADV  E  +  +  +++    K++  +    E +   ++  L   L    +  + K 
Sbjct: 38  LMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKD 97

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
               +  +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VP
Sbjct: 98  --RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155

Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
           V+       P +I       A+ +  D+++VDT+GRL     LM EL ++K+V+      
Sbjct: 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG----- 210

Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI---- 272
            P E+ L++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA+    S     
Sbjct: 211 -PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AAL----SARHVT 263

Query: 273 --PLYFIGIGEKIEDLQIF 289
             P+YF G+ EK E L+ F
Sbjct: 264 GKPIYFAGVSEKPEGLEPF 282

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Length = 432

 Score =  213 bits (544), Expect = 2e-66
 Identities = 93/257 (36%), Positives = 134/257 (52%), Gaps = 18/257 (7%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           L++ADV  +    +  E+++    +K        E +  +++  LV LL    K L    
Sbjct: 37  LIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNP 96

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
            K  VI++VG+ G GKTTT  KLA Y +KR     L A DT+R AAYEQL  L +   VP
Sbjct: 97  KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156

Query: 157 VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF 215
           +   E +   P  I    +     K  D++I+DT+GR   +  L+ E+K+IK++      
Sbjct: 157 IYGDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITN---- 210

Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFS-KILRITGLIITKLDGTTKGGILAAIAKKYSI-- 272
             P EI L+IDG  GQ    Q K F   +  I  +I+TKLDG+ KGG   A++       
Sbjct: 211 --PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGG--GALSAVAETKA 266

Query: 273 PLYFIGIGEKIEDLQIF 289
           P+ FIGIGE I+DL+ F
Sbjct: 267 PIKFIGIGEGIDDLEPF 283

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Length = 425

 Score =  209 bits (534), Expect = 5e-65
 Identities = 88/259 (33%), Positives = 136/259 (52%), Gaps = 24/259 (9%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           L+ ADV  E T+  +  +++    K++  +    E +   ++  L   L    +  + K 
Sbjct: 38  LMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKD 97

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP 156
               +  +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +LG+   VP
Sbjct: 98  --RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155

Query: 157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFE 216
           V+       P +I       A+ +  D+++VDT+GRL     LM EL ++K+V+      
Sbjct: 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG----- 210

Query: 217 LPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI---- 272
            P E+ L++D  TGQ  LS  + F + + +TGL++TKLDG  +GG  AA+    S     
Sbjct: 211 -PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGG--AAL----SARHVT 263

Query: 273 --PLYFIGIGEKIEDLQIF 289
             P+YF G+ EK E L+ F
Sbjct: 264 GKPIYFAGVSEKPEGLEPF 282

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Length = 433

 Score =  206 bits (526), Expect = 8e-64
 Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 23/260 (8%)

Query: 41  LLKADVGFETTQFLLNELKKIIYSKKLFNT----EQVRNVLHNLLVNLLKSLEKPLIFKK 96
           LL+ADV     +  +N +K+     ++  +    ++   ++ N LV  +    + L    
Sbjct: 38  LLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAA 97

Query: 97  CKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDV 155
             P V+++ G+ G GKTT++GKL  + + K KK VL+ + D +R AA +QL  L +   V
Sbjct: 98  QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157

Query: 156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIF 215
                     P  I   A+  A+ K  D+++VDT+GRL     +M E+K++   I     
Sbjct: 158 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN---- 213

Query: 216 ELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSI--- 272
             P E   ++D  TGQ+  +  K F++ L +TG+++TK+DG  +GG  AA+    SI   
Sbjct: 214 --PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGG--AAL----SIRHI 265

Query: 273 ---PLYFIGIGEKIEDLQIF 289
              P+ F+G+GEK E L+ F
Sbjct: 266 TGKPIKFLGVGEKTEALEPF 285

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 62/385 (16%), Positives = 112/385 (29%), Gaps = 147/385 (38%)

Query: 9   LKESLSKTACN--------------LKSLIVNKKIDKNLYNELESDLLKADVGF------ 48
            K  LSK   +              L   +++K+  + +  +   ++L+ +  F      
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIK 99

Query: 49  -ETTQFLLNELKKIIYSKKLFNTEQV---RNV----LHNLLVNLLKSLEKPLIFKKCKPF 100
            E  Q  +     I    +L+N  QV    NV     +  L   L  L +P         
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RP------AKN 152

Query: 101 VIMIVGVNGVGKTT----------------------TIGK----------LANYFKKRKK 128
           V+ I GV G GKT                        +            L     +   
Sbjct: 153 VL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 129 SVLLAACDT------------------FRAAAYEQ-LLILGKYNDVPVISEKKITDPAAI 169
           +   +  D                    ++  YE  LL+L    +V      K  +    
Sbjct: 212 N-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNV---QNAKAWN---- 260

Query: 170 AFNA-----INIAQKKNTDIVIVDTSGRLSTQSHLM----RELKKI-KKVIEKKIFELPY 219
           AFN      +    K+ TD +   T+  +S   H M     E+K +  K ++ +  +LP 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 220 EI-------------FLIIDGNTGQNTL-SQIKEFSKILRITGLIITKLDGTTKGGILAA 265
           E+              +     T  N       + + I+  +   +  L+         A
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLE--------PA 369

Query: 266 IAKKYSIPLYFIGIGEKIEDLQIFN 290
             +K     +        + L +F 
Sbjct: 370 EYRKM----F--------DRLSVFP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 61/384 (15%), Positives = 121/384 (31%), Gaps = 114/384 (29%)

Query: 1   MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKA-DVG---FETTQ---- 52
           ++I+ I      L K+      L+V   +  N+ N   +    A ++      TT+    
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLV---LL-NVQN---AKAWNAFNLSCKILLTTRFKQV 277

Query: 53  --FLLNELKKIIYSKKL---FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGV 107
             FL       I           ++V+++L   L    + L  P       P  + I+  
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAE 335

Query: 108 NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA----AYEQLLILGKYNDVP--VIS-- 159
           +      T     +    +  +++ ++ +    A     +++L +      +P  ++S  
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 160 --EKKITDPAAIA-----FNAINIAQKKNT----DI----------------VIVDT--- 189
             +   +D   +      ++ +    K++T     I                 IVD    
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 190 -----SGRLSTQ-------SHLMRELKKIKKVIEKKIFELPYEIF------LIIDGNTGQ 231
                S  L          SH+   LK I+      +F + +  F      +  D     
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 232 ------NTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI-GIGEKI- 283
                 NTL Q+K +          I   D   +  ++ AI       L F+  I E + 
Sbjct: 516 ASGSILNTLQQLKFYKP-------YICDNDPKYE-RLVNAI-------LDFLPKIEENLI 560

Query: 284 ----EDL-QIFNAVDFVNALLNQN 302
                DL +I        AL+ ++
Sbjct: 561 CSKYTDLLRI--------ALMAED 576

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYN--DVPV 157
           + ++ G+ GVGK+T + K+      +  +  ++   D   A A +      +     + V
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMREL 203
             +KK+   AA        A+      + +DT   + T S  +  L
Sbjct: 63  EKQKKLQIDAAKGI--AEEARAGGEGYLFIDTHAVIRTPSGYLPGL 106

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
           + +I G  GVGK+TT  +LA    +   S  +   D           ++G Y       E
Sbjct: 4   LYIITGPAGVGKSTTCKRLA---AQLDNSAYIEG-DIINHM------VVGGYRPPWESDE 53

Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
                   I    +N    +N   V++D          L + ++     +E +   L
Sbjct: 54  LLALTWKNITDLTVNFLLAQND--VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIIL 108

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 17/91 (18%)

Query: 109 GVGKTTTIGKLANYFKKRKKSVLLAACD----TFRAAAYEQLLILGKYNDVPVISEKKIT 164
           G GKTT +  +A    +   ++ +   D        +   +           V +     
Sbjct: 12  GSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGK-------AAFDVFTAASEK 64

Query: 165 DPAAIAFNAINIAQKKNTDIVIVDTSGRLST 195
           D   I           + D  IVD +G LS 
Sbjct: 65  DVYGIR------KDLADYDFAIVDGAGSLSV 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	100.0
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	100.0
2og2_A	359	Putative signal recognition particle receptor; nuc	100.0
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	100.0
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	100.0
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	100.0
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	100.0
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	100.0
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	100.0
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	100.0
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	100.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	100.0
2xxa_A	433	Signal recognition particle protein; protein trans	100.0
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	100.0
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	100.0
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.91
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.91
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.9
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.9
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.9
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.9
1g6h_A	257	High-affinity branched-chain amino acid transport	99.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.89
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.89
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.89
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.89
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.89
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.89
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.88
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.88
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.88
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.88
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.88
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.88
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.87
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.87
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.86
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.86
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.85
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.85
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.85
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.84
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.84
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.82
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.81
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.81
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.81
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.81
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.8
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.79
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.77
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.75
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.75
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.75
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.75
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.73
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.73
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.71
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.65
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.63
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.62
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.61
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.57
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.56
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.55
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.54
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.54
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.52
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.5
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.5
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.46
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.44
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.44
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.43
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.4
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.4
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.4
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.4
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.4
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.39
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.35
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.34
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.33
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.33
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.32
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.32
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.31
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.31
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.3
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.3
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.29
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.29
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.29
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.29
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.28
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.25
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.2
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.18
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.17
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.15
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.13
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.09
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.09
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.08
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.04
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.01
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.94
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.92
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.91
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.91
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.88
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.85
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.81
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.81
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.8
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.78
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.78
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.77
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.77
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.76
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.75
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.74
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.73
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.72
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.67
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.63
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.6
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.6
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.59
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.59
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.57
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.54
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.53
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.51
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.49
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.49
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.48
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.47
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.47
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.46
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.46
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.43
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.42
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.41
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.4
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.39
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	98.39
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.39
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.38
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.38
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.35
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.33
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.31
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.28
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.27
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.26
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.24
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.24
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.23
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.21
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.2
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.19
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	98.19
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.18
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.16
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	98.15
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.13
3end_A	307	Light-independent protochlorophyllide reductase ir	98.13
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.12
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	98.11
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.11
3bos_A	242	Putative DNA replication factor; P-loop containing	98.1
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.09
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.09
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.07
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.07
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.06
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.05
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.05
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.05
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	98.04
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.03
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	98.03
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	98.02
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.02
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.01
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	98.01
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.01
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.0
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	98.0
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.99
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.97
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.96
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.96
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.96
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.93
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.93
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	97.92
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	97.91
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.91
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.9
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.89
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	97.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.88
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	97.88
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.88
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.86
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.86
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.84
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.84
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.82
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.81
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	97.79
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.79
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.78
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.78
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.76
2qgz_A	308	Helicase loader, putative primosome component; str	97.76
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.75
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.73
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	97.73
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.73
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.72
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.72
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.7
3io5_A	333	Recombination and repair protein; storage dimer, i	97.69
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	97.68
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.67
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.67
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.66
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.65
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.63
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	97.62
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.62
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.61
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.61
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.61
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.6
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.56
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.56
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.56
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.55
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.54
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.54
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.52
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	97.52
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.51
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.49
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.48
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.47
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.47
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.45
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.44
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.42
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.41
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.41
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	97.41
3ice_A	422	Transcription termination factor RHO; transcriptio	97.39
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.38
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.38
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.37
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.37
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.36
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.36
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.33
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.33
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.32
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.31
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.31
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.3
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.3
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.29
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.29
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.29
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.28
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.27
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.27
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.25
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.24
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.24
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.24
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.22
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.22
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.22
3fwy_A	314	Light-independent protochlorophyllide reductase I	97.22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.22
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.2
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.18
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.17
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.17
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.16
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.16
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.15
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.15
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.14
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.13
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.13
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.12
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.12
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.12
1via_A	175	Shikimate kinase; structural genomics, transferase	97.11
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.1
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.1
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.09
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.09
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.09
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	97.08
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.08
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.08
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	97.06
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.05
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.05
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.05
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.05
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.03
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.02
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.02
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.01
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.01
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.0
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	96.99
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.99
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.98
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.98
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	96.96
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.96
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.93
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.93
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.93
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.92
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.92
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.91
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.91
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.91
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.9
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.9
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.89
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.88
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.87
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.87
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.87
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.86
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	96.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.86
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.85
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.84
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.84
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	96.83
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.83
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.82
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.82
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.81
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.81
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.8
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.78
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.77
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.77
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.76
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.75
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.74
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.74
3pvs_A	447	Replication-associated recombination protein A; ma	96.73
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.72
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.72
3igf_A	374	ALL4481 protein; two-domained protein consisting o	96.72
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.71
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.7
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.69
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.68
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.68
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.68
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.68
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	96.66
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.64
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.63
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.61
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.6
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.6
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.57
3co5_A	143	Putative two-component system transcriptional RES	96.55
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.54
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.54
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.53
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.53
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.53
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.52
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.51
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.49
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.46
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.45
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.45
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.45
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.44
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.44
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.43
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.43
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.42
1wb1_A	482	Translation elongation factor SELB; selenocysteine	96.42
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.42
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.41
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.41
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.41
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.41
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.4
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.4
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	96.39
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.39
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.39
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.39
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	96.39
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.39
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.38
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.38
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.38
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.37
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.36
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.35
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.35
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	96.34
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.34
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.33
3kta_B	173	Chromosome segregation protein SMC; structural mai	96.33
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.32
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.32
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.32
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.32
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.31
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.3
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.29
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.28
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.27
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.27
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.26
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.26
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.26
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.25
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.25
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.25
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.24
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.23
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.23
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.23
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.22
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.21
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.21
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.21
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.2
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.19
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.19
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.18
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.17
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.17
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.16
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.16
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.16
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.15
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.15
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.14

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=100.00  E-value=1.6e-50  Score=386.77  Aligned_cols=301  Identities=48%  Similarity=0.743  Sum_probs=276.2

Q ss_pred             CcchHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy2881           1 MKINWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNV   76 (302)
Q Consensus         1 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (302)
                      .||+||.+|++++++++    +++.++|+++.++++.+++|+..|+++||+.+++.+|++.++++...++..+.+.++.+
T Consensus       191 ~~~~~~~~l~~~l~kt~~~l~~~l~~~~~~~~ide~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  270 (503)
T 2yhs_A          191 TKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGL  270 (503)
T ss_dssp             CHHHHHHHHHHHTHHHHTTSTTHHHHHHTTCBCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            37899999999999996    56778888888999999999999999999999999999999998887777788999999


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      +++.|.+.+.+..+++||++.+|++++|+||||||||||+++|+|++++++|+|.+.+.|+++.++.+|+..|+.+.+++
T Consensus       271 l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~  350 (503)
T 2yhs_A          271 LKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP  350 (503)
T ss_dssp             HHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCce
Confidence            99999999998888999999999999999999999999999999999999999999999999988888998887777888


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++.+....++...+++.+..+...+.|++|+|++|+.++...++.+|.++.+.........+|++.+++++++|++.+.+
T Consensus       351 vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~  430 (503)
T 2yhs_A          351 VIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ  430 (503)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH
T ss_pred             EEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH
Confidence            88887777787788888888888999999999999888888999999888765444444568999999999999999999


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      ++.|+..++++++|+||+|++.++|.++++++.+++||.|+|+||+++||++|+|++|+++|||.
T Consensus       431 ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~  495 (503)
T 2yhs_A          431 AKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFAR  495 (503)
T ss_dssp             HHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC
T ss_pred             HHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999984

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=100.00  E-value=8.3e-49  Score=357.82  Aligned_cols=291  Identities=47%  Similarity=0.709  Sum_probs=260.3

Q ss_pred             cchHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy2881           2 KINWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVL   77 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   77 (302)
                      -|++|.++++++++++    +.+.++|.+++++++.++++++.|+++||+++++++|++.+++       .+++ +++++
T Consensus        12 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~-------~~~~-~~~~~   83 (306)
T 1vma_A           12 HMGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEE-------KDGD-ALESL   83 (306)
T ss_dssp             --CHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT-------CCSC-HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-------cCHH-HHHHH
Confidence            3789999999999996    5566777655899999999999999999999999999998875       2345 89999


Q ss_pred             HHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881          78 HNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV  157 (302)
Q Consensus        78 ~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~  157 (302)
                      .+.|.+.+.+.- ++++...+|++++|+|||||||||++++||+++++.+|+|.+.+.|++|.++.+|+..|.+..++++
T Consensus        84 ~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~  162 (306)
T 1vma_A           84 KEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV  162 (306)
T ss_dssp             HHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence            999999997643 6677778899999999999999999999999999999999999999999999999999998888888


Q ss_pred             eecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881         158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI  237 (302)
Q Consensus       158 ~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~  237 (302)
                      +....+.++....++++++++..+|+++|+|||++.+....++++|.++.+...+.+...++.+.+|++++++++.+.++
T Consensus       163 ~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a  242 (306)
T 1vma_A          163 ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA  242 (306)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH
T ss_pred             EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH
Confidence            87766778877777889999999999999999999888999999999988765554555688899999999888888888


Q ss_pred             HHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         238 KEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       238 ~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      +.|.+..+++++|+||+|++.++|.+++++..+++||.|+++||+++||++|+|++|+++|||.
T Consensus       243 ~~~~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~~  306 (306)
T 1vma_A          243 KIFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE  306 (306)
T ss_dssp             HHHHHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTCC
T ss_pred             HHHHhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence            9998889999999999999999999999999999999999999999999999999999999984

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-47  Score=355.37  Aligned_cols=299  Identities=39%  Similarity=0.588  Sum_probs=265.4

Q ss_pred             cchHHHHHHHHHHHHHHHH---HHhhhc-CcCC-hHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy2881           2 KINWITRLKESLSKTACNL---KSLIVN-KKID-KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNV   76 (302)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (302)
                      +|+||++|+++++++++++   .++|++ ++++ ++.++++++.|+++||+.+++++|++.+++....++..+.+.++++
T Consensus        53 ~~~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (359)
T 2og2_A           53 AKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDA  132 (359)
T ss_dssp             --CHHHHHHHHTHHHHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            5789999999999997655   466765 4688 9999999999999999999999999999999988888889999999


Q ss_pred             HHHHHHHHhhccC--CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCC
Q psy2881          77 LHNLLVNLLKSLE--KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYND  154 (302)
Q Consensus        77 l~~~l~~~l~~~l--~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~  154 (302)
                      +.+.|.+.+.+..  .+++|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.|+++.++.+|+..|+.+.+
T Consensus       133 l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~  212 (359)
T 2og2_A          133 LKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTG  212 (359)
T ss_dssp             HHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcC
Confidence            9999999998765  68999999999999999999999999999999999999999999999999999999998887778


Q ss_pred             CCeeecCCC-CCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH
Q psy2881         155 VPVISEKKI-TDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT  233 (302)
Q Consensus       155 ~~~~~~~~~-~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~  233 (302)
                      ++++.+... .++...+++.+..+...+.+.+++|+++..+.....+.+|.+........+...++++.+++|++.|.+.
T Consensus       213 i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~  292 (359)
T 2og2_A          213 CEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNM  292 (359)
T ss_dssp             CEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGG
T ss_pred             eEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCH
Confidence            888887766 6787788888877776778899999999777777888888865544445555668889999998888888


Q ss_pred             HHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         234 LSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       234 ~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ..+...|++..+++++++||+|+++++|.+++++..++.||.|+++||.++||++|+|++|+++|||
T Consensus       293 ~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~  359 (359)
T 2og2_A          293 LPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS  359 (359)
T ss_dssp             HHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence            8888999888899999999999999999999999999999999999999999999999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=100.00  E-value=1.8e-46  Score=345.54  Aligned_cols=293  Identities=35%  Similarity=0.557  Sum_probs=253.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhh----------------hcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Q psy2881           3 INWITRLKESLSKTACNLKSLI----------------VNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKII   62 (302)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~   62 (302)
                      -|||++||+.|+++++++...+                ....+++    +++++|+..|+++||+.+++++|++.+++.+
T Consensus         5 ~~mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~   84 (328)
T 3e70_C            5 ASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKL   84 (328)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4899999999999987655533                2335665    5788999999999999999999999999998


Q ss_pred             hcCCC----CCHHHHHHHHHHHHHHHhhccCCCcce-----ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881          63 YSKKL----FNTEQVRNVLHNLLVNLLKSLEKPLIF-----KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus        63 ~~~~~----~~~~~~~~~l~~~l~~~l~~~l~~i~l-----~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      .+++.    ...+.+..++.+.+.+.+.+.- ++++     ..++|++++|+||||||||||+++|+|+++|++|+|.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~  163 (328)
T 3e70_C           85 VGKKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA  163 (328)
T ss_dssp             TTCEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhcccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence            76542    2346788889999988887542 2333     347899999999999999999999999999999999999


Q ss_pred             cccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchh
Q psy2881         134 ACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKK  213 (302)
Q Consensus       134 ~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~  213 (302)
                      +.|+++.++.+|+..|++..+++++.+....++...+++.+..+...+++++++|++|..+....++++|..+.+.    
T Consensus       164 g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra----  239 (328)
T 3e70_C          164 ASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV----  239 (328)
T ss_dssp             EECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHH----
T ss_pred             eecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHH----
Confidence            9999999999999999999999998888888888888888888888889999999999777777788888887654    


Q ss_pred             hccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHH
Q psy2881         214 IFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVD  293 (302)
Q Consensus       214 i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~  293 (302)
                        +.+|...+++|++.+++.+.+.+.|++..+++++|+||+|+++++|.++++++.+++||.|+++||.|+||++|+|++
T Consensus       240 --l~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~  317 (328)
T 3e70_C          240 --TKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEW  317 (328)
T ss_dssp             --HCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHH
T ss_pred             --hcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHH
Confidence              357888999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCC
Q psy2881         294 FVNALLNQN  302 (302)
Q Consensus       294 ~~~~l~~~~  302 (302)
                      |+++|||.+
T Consensus       318 ~~~~llg~~  326 (328)
T 3e70_C          318 FLERIFGEE  326 (328)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHhCCc
Confidence            999999853

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=100.00  E-value=2.8e-45  Score=334.32  Aligned_cols=293  Identities=39%  Similarity=0.603  Sum_probs=255.9

Q ss_pred             HHHHHHHHHHHH---HHHhhhc-CcCC-hHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy2881           8 RLKESLSKTACN---LKSLIVN-KKID-KNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLV   82 (302)
Q Consensus         8 ~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   82 (302)
                      ++++++++++++   +.++|++ +.++ ++.++++++.|+++||+++++++|++.+++....++..+.+.+++++.+.|.
T Consensus         2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (302)
T 3b9q_A            2 KVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVL   81 (302)
T ss_dssp             HHHHHTHHHHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            677888887654   5577765 4788 9999999999999999999999999999999888877788999999999999


Q ss_pred             HHhhccC--CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec
Q psy2881          83 NLLKSLE--KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE  160 (302)
Q Consensus        83 ~~l~~~l--~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~  160 (302)
                      +.+.+..  .+++|++++|++++|+||||||||||+++|+|+++|++|+|.+.+.|+++.++.+|+..|+.+.+++++.+
T Consensus        82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q  161 (302)
T 3b9q_A           82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA  161 (302)
T ss_dssp             HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC
T ss_pred             HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEe
Confidence            9997654  68999999999999999999999999999999999999999999999999999999998887778888877


Q ss_pred             CCC-CCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHH
Q psy2881         161 KKI-TDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKE  239 (302)
Q Consensus       161 ~~~-~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~  239 (302)
                      ... .++...+++.+..+...+.+.+++|+++..+.....+.+|.+........+...+++..+++|++.|.+...+.+.
T Consensus       162 ~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~  241 (302)
T 3b9q_A          162 EGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQARE  241 (302)
T ss_dssp             C--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred             cCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHH
Confidence            666 6777778888877666778899999999767777788888755444444555568888999998888888888889


Q ss_pred             HHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         240 FSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       240 f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      |++..+++++++||+|++.++|.+++++..++.||.|+++||.++||++|+|++|+++|||
T Consensus       242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg  302 (302)
T 3b9q_A          242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS  302 (302)
T ss_dssp             HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred             HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence            9888899999999999999999999999999999999999999999999999999999986

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=100.00  E-value=1.4e-45  Score=336.44  Aligned_cols=290  Identities=42%  Similarity=0.646  Sum_probs=231.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHh--hhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy2881           3 INWITRLKESLSKTACNLKSL--IVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL   80 (302)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (302)
                      |+||++|+++++++++++.+-  |.+ .+ ++.++++++.|+++||+.+++++|++.+++...       +.+++++.+.
T Consensus         1 ~~~~~~l~~~l~~~~~~~~~~~~~~~-~~-~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   71 (304)
T 1rj9_A            1 MGFFDRLKAGLAKTRERLLKAIPWGG-NL-EEVLEELEMALLAADVGLSATEEILQEVRASGR-------KDLKEAVKEK   71 (304)
T ss_dssp             ---------------------------CH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------SSTTHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcccccch-hh-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            689999999999997666542  333 56 889999999999999999999999999986542       5667888888


Q ss_pred             HHHHhhccCC-----Ccceec-------CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          81 LVNLLKSLEK-----PLIFKK-------CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        81 l~~~l~~~l~-----~i~l~~-------~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      |.+.+.+...     ++++.-       .+|++++|+||||||||||+++|+|+++|++|+|.+.+.|+++.++.+|+..
T Consensus        72 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~  151 (304)
T 1rj9_A           72 LVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSE  151 (304)
T ss_dssp             HTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHH
T ss_pred             HHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHH
Confidence            8888765322     233321       2689999999999999999999999999999999999999999888889988


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+++++.+....++...+++.++.+...+++++++|++|..+....++.+|.+......+.....++.+.+++|+.
T Consensus       152 ~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~  231 (304)
T 1rj9_A          152 WGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV  231 (304)
T ss_dssp             HHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT
T ss_pred             HHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHH
Confidence            88777888888877778877788888877777899999999997777778888888766555555666788899999999


Q ss_pred             CChhHHHHHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         229 TGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       229 ~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      .+.+.+.+...|....+++++++||.|+++++|.++++.+.+++||.|+|+||+++||++|+|++|+++|||.
T Consensus       232 t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~~  304 (304)
T 1rj9_A          232 TGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED  304 (304)
T ss_dssp             BCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence            9999898999998888999999999999999999999999999999999999999999999999999999983

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=100.00  E-value=1.1e-43  Score=326.04  Aligned_cols=282  Identities=37%  Similarity=0.603  Sum_probs=247.7

Q ss_pred             HHHHHHhhhc-CcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccC-----C
Q psy2881          17 ACNLKSLIVN-KKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLE-----K   90 (302)
Q Consensus        17 ~~~~~~~~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l-----~   90 (302)
                      .+++.++|++ +.++++.+++|++.|+++||+++++.+|++.+++....++..+.  +++++.+.|.+.+.+.-     .
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~   96 (320)
T 1zu4_A           19 SKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFEN--IKDALVESLYQAYTDNDWTNKKY   96 (320)
T ss_dssp             HHHHHHHHHTCCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHH--HHHHHHHHHHHHHHCSCC----C
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHH--HHHHHHHHHHHHhCccccccccc
Confidence            3566778876 58999999999999999999999999999999998766553333  88999999999998765     6


Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcc---cCCCCee-ecCCCCCH
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGK---YNDVPVI-SEKKITDP  166 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~---~~~~~~~-~~~~~~~~  166 (302)
                      +++|+..+|++++++|||||||||++++||+++.+.+|+|.+.+.|+++.++.+|+..|.+   ..+++++ ......++
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p  176 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADP  176 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCH
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCH
Confidence            8999999999999999999999999999999999999999999999999998889888877   6777777 55555677


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCC
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI  246 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~  246 (302)
                      ....++.+..++..++|+||+|+|++.+....+++++.++.+.....+...+|.+.+|++++.+++.+.+++.|++..++
T Consensus       177 ~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~i  256 (320)
T 1zu4_A          177 ASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADV  256 (320)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCCC
Confidence            76777778777889999999999998888778888888876654433344578889999999888889888889888899


Q ss_pred             CeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         247 TGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       247 ~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      .++|+||+|++.++|.++++...+++|+.|+++||+++||++|+|++|+++|||
T Consensus       257 ~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~  310 (320)
T 1zu4_A          257 SGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS  310 (320)
T ss_dssp             CEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred             cEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999998

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=100.00  E-value=1.4e-40  Score=315.57  Aligned_cols=286  Identities=34%  Similarity=0.543  Sum_probs=248.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCChH----HHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDKN----LYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
                      +|+.|.++++..   +.++.+...++++    .+++|+..|+++||+.+++..+++.+++....++.    .+.+.+.++
T Consensus         2 ~~~~l~~~l~~~---~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~   78 (443)
T 3dm5_A            2 VLDNLGKALANT---LKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKI   78 (443)
T ss_dssp             CSTHHHHHHHHH---HHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHH
Confidence            356666666554   4444445578864    57899999999999999999999999998876653    356788899


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      +.+.|.+.+.+.-..+.+. .++.+++++||+||||||++.+||.++...+.+|.+.++|++|.++.+|++.|++..+++
T Consensus        79 l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvp  157 (443)
T 3dm5_A           79 VYEELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE  157 (443)
T ss_dssp             HHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCE
T ss_pred             HHHHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCc
Confidence            9999999887522223332 357899999999999999999999999988899999999999999999999999999999


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++......++...+.+++..+...++|++|+||||+.+....++.++.++.+.      ..+|.+.+|++++.|++.+.+
T Consensus       158 v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~------~~pd~vlLVvDA~~gq~a~~~  231 (443)
T 3dm5_A          158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNV------IHPHEVILVIDGTIGQQAYNQ  231 (443)
T ss_dssp             EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH------HCCSEEEEEEEGGGGGGHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHh------hcCceEEEEEeCCCchhHHHH
Confidence            98877777888888888888888889999999999888888899999888654      247899999999999988989


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ++.|.+..+++++|+||+|+++++|.++++...+++||.|+++||.++||++|+|++|+++|||
T Consensus       232 a~~f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg  295 (443)
T 3dm5_A          232 ALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG  295 (443)
T ss_dssp             HHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT
T ss_pred             HHHHHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=100.00  E-value=4.6e-40  Score=299.09  Aligned_cols=285  Identities=32%  Similarity=0.484  Sum_probs=236.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCC---C-HHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF---N-TEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~   76 (302)
                      ||++|+++++++.++   ++.++.+++    +.+++|+..|+.+|++.+++..+++.+.....++...   + .+++...
T Consensus         1 m~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~   77 (295)
T 1ls1_A            1 MFQQLSARLQEAIGR---LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILAT   77 (295)
T ss_dssp             CCHHHHHHHHHHHHT---TTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH
Confidence            578899998876444   555667885    6788999999999999999999999998776665432   3 3778888


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      ..+.+...+....++++|+  +|++++++|+||+||||++++||+++.+.+|+|.+.+.|+++.++..|+..+.+..+++
T Consensus        78 ~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~  155 (295)
T 1ls1_A           78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP  155 (295)
T ss_dssp             HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeE
Confidence            8888888886544678888  89999999999999999999999999999999999999999988888888888878888


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++......++....+.+++.+...++|++|+|||+........+..+.++.+.      +.++...+|++++.+.+.+.+
T Consensus       156 ~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~------~~~~~~~lv~~~~~~~~~~~~  229 (295)
T 1ls1_A          156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV------LGPDEVLLVLDAMTGQEALSV  229 (295)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH------HCCSEEEEEEEGGGTHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh------cCCCEEEEEEeCCCcHHHHHH
Confidence            88765555676666677887777899999999998666566777888777654      247788888988877788888


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ++.|++.+++.++|+||+|++.++|.+++++..+++||.|+|+||+++||++|+|++|+++|||
T Consensus       230 ~~~~~~~~~i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~  293 (295)
T 1ls1_A          230 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG  293 (295)
T ss_dssp             HHHHHHHTCCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTT
T ss_pred             HHHHhhcCCCCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhc
Confidence            8889888888999999999999999999999999999999999999999999999999999997

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=100.00  E-value=8.3e-40  Score=309.75  Aligned_cols=285  Identities=32%  Similarity=0.480  Sum_probs=249.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
                      ||++|.++++++.   .+++....+++    +.+++++..|+++||+.+++++|++.+++...+++.    .+.+.+..+
T Consensus         1 m~~~l~~~l~~~~---~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   77 (425)
T 2ffh_A            1 MFQQLSARLQEAI---GRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILAT   77 (425)
T ss_dssp             CCHHHHHHHHHHH---HTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHH
T ss_pred             ChHHHHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH
Confidence            4788888887764   44455567885    678999999999999999999999999998877653    456789999


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      +.+.+...+....++++|+  +|++++++|||||||||++.+||+++.+.+++|.+.+.|+++.++.+|+..+++..+++
T Consensus        78 v~~~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~  155 (425)
T 2ffh_A           78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP  155 (425)
T ss_dssp             HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCcc
Confidence            9999999997655678887  88999999999999999999999999999999999999999999999999999888999


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++......++.....+++..+...++|++|+|+||+.+....++.++.++.+.      +.++.+.+|++++.+++.+.+
T Consensus       156 v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~------~~pd~vlLVvDa~tgq~av~~  229 (425)
T 2ffh_A          156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV------LGPDEVLLVLDAMTGQEALSV  229 (425)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH------HCCSEEEEEEEGGGTTHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc------cCCceEEEEEeccchHHHHHH
Confidence            88876666776666677776666889999999999777777788888777553      357888999999888888888


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      ++.|++.+++.++|+||+|++.++|.+++++..+++||.|+++||.++||++|+|++++++|+|
T Consensus       230 a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg  293 (425)
T 2ffh_A          230 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG  293 (425)
T ss_dssp             HHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHT
T ss_pred             HHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhc
Confidence            8999888999999999999999999999999999999999999999999999999999999997

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=100.00  E-value=2.5e-40  Score=313.75  Aligned_cols=274  Identities=35%  Similarity=0.534  Sum_probs=238.7

Q ss_pred             HHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHhhccCC-
Q psy2881          20 LKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNVLHNLLVNLLKSLEK-   90 (302)
Q Consensus        20 ~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~l~-   90 (302)
                      ++++.+...+++    +++++|+..|+++||+.+++..+++.+++.+..++.    .+.+.+.+++.+.|.+.+.+... 
T Consensus        10 ~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~~   89 (433)
T 3kl4_A           10 VRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKEP   89 (433)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCccccc
Confidence            344444556776    457899999999999999999999999998876553    35678889999999998875321 


Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHH
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIA  170 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~  170 (302)
                      .+... .+|.+++++|||||||||++.+||+++.+.+++|.+.+.|++|.++.+|+..+++..+++++......++....
T Consensus        90 ~~~~~-~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~  168 (433)
T 3kl4_A           90 NVNPT-KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIA  168 (433)
T ss_dssp             CCSCC-SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHH
T ss_pred             ccccc-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHH
Confidence            12222 36899999999999999999999999999999999999999999999999999999999998877777887777


Q ss_pred             HHHHHHHHhCCCCeEEEcCCCCcc--chHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCe
Q psy2881         171 FNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITG  248 (302)
Q Consensus       171 ~~~la~al~~~~~llllDEP~d~~--~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~  248 (302)
                      ..+++.+...++|++|+||||+.+  ....++.++.++.+..      .++.+.+|++++.|++.+.+++.|++.+++++
T Consensus       169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~------~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~g  242 (433)
T 3kl4_A          169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL------KPDDVILVIDASIGQKAYDLASRFHQASPIGS  242 (433)
T ss_dssp             HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH------CCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEE
T ss_pred             HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh------CCcceEEEEeCccchHHHHHHHHHhcccCCcE
Confidence            777877777899999999999777  7778888888876642      47899999999999988889999999999999


Q ss_pred             EEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhcc
Q psy2881         249 LIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLN  300 (302)
Q Consensus       249 ~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~  300 (302)
                      +|+||+|+++++|.++++...+++||.|+++||.++||++|+|++|+++|||
T Consensus       243 VIlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg  294 (433)
T 3kl4_A          243 VIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG  294 (433)
T ss_dssp             EEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC
T ss_pred             EEEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999998

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=100.00  E-value=1.5e-39  Score=295.71  Aligned_cols=275  Identities=35%  Similarity=0.528  Sum_probs=237.8

Q ss_pred             HHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHhhccCCC
Q psy2881          20 LKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNVLHNLLVNLLKSLEKP   91 (302)
Q Consensus        20 ~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~l~~   91 (302)
                      +.+++.++.+++    +.++++++.|+++||+++++++|++.+++...+++.    .+.+.+.+.+.+.+.+.+....++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   90 (297)
T 1j8m_F           11 VRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFGGDKEP   90 (297)
T ss_dssp             HHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhcccccc
Confidence            444455567887    678999999999999999999999999998876653    345778899999999999765567


Q ss_pred             -cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHH
Q psy2881          92 -LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIA  170 (302)
Q Consensus        92 -i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~  170 (302)
                       ++++.+ |.+++++|+||+||||++.+||+.+.+.+++|.+.+.|+++.++.+|++.|++..+++++......++....
T Consensus        91 ~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~  169 (297)
T 1j8m_F           91 KVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIA  169 (297)
T ss_dssp             CCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHH
T ss_pred             ccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHH
Confidence             888866 999999999999999999999999999999999999999999999999999888889888765556777666


Q ss_pred             HHHHHHHHhCCCCeEEEcCCCCcc--chHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCe
Q psy2881         171 FNAINIAQKKNTDIVIVDTSGRLS--TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITG  248 (302)
Q Consensus       171 ~~~la~al~~~~~llllDEP~d~~--~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~  248 (302)
                      .+.+..+...++|++|+|+||..+  ....++.++.++...      ..++++.+|++++.+++.+.+++.|++..++.+
T Consensus       170 ~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~------~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~g  243 (297)
T 1j8m_F          170 KRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA------IKPDEVTLVIDASIGQKAYDLASKFNQASKIGT  243 (297)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHH------HCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEE
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHH------hcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCE
Confidence            666766555889999999999776  666788888777543      357889999999888888888888887788889


Q ss_pred             EEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         249 LIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       249 ~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      +|+||+|++.++|.+++++..+++|+.|+++||.++||++|+|++|+++|||.
T Consensus       244 vVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~  296 (297)
T 1j8m_F          244 IIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH  296 (297)
T ss_dssp             EEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred             EEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=100.00  E-value=1.1e-35  Score=283.10  Aligned_cols=288  Identities=28%  Similarity=0.494  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
                      ||++|.++++++.   .++.+...+++    +.+++++..|+++||+.+++++|++.+++.+.+++.    .+.+.+.++
T Consensus         1 m~~~l~~~l~~~~---~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (433)
T 2xxa_A            1 MFDNLTDRLSRTL---RNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKI   77 (433)
T ss_dssp             ---CHHHHHHHHH---HHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHH
T ss_pred             ChHHHHHHHHHHH---HHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHH
Confidence            5788888887764   33344567888    678999999999999999999999999998877653    346788899


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDV  155 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~  155 (302)
                      +.+.+.+.+.+...++++.-.++.+++++|++||||||+..+||..+... +.+|.+.+.|+++.++.+|+..++...++
T Consensus        78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l  157 (433)
T 2xxa_A           78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV  157 (433)
T ss_dssp             HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence            99999999976544555554567899999999999999999999999987 88999999999999999999988888888


Q ss_pred             CeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHH
Q psy2881         156 PVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLS  235 (302)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~  235 (302)
                      +++......++.....+++..+...++|++|+|+||..+....++.+|..+...      ..++...+|+++..+++.+.
T Consensus       158 ~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~------~~p~~vllVvda~~g~~~~~  231 (433)
T 2xxa_A          158 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS------INPVETLFVVDAMTGQDAAN  231 (433)
T ss_dssp             EECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH------SCCSEEEEEEETTBCTTHHH
T ss_pred             eEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh------hcCcceeEEeecchhHHHHH
Confidence            887766556776666666766555789999999999777666788888776432      46889999999998888888


Q ss_pred             HHHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         236 QIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       236 ~~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      .++.|+..+++.++|+||+|++.++|.++++...+++|+.|+|+||.++|+.+|+|++++++++|.
T Consensus       232 ~~~~f~~~l~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~  297 (433)
T 2xxa_A          232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGM  297 (433)
T ss_dssp             HHHHHHHHSCCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCC
T ss_pred             HHHHHhccCCCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCc
Confidence            888998888888999999999999999999999999999999999999999999999999999873

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=100.00  E-value=6.2e-36  Score=271.93  Aligned_cols=255  Identities=27%  Similarity=0.328  Sum_probs=206.0

Q ss_pred             ChHHHHHHHHHHHHCCCChHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCC
Q psy2881          30 DKNLYNELESDLLKADVGFETTQFLLNEL-KKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVN  108 (302)
Q Consensus        30 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpn  108 (302)
                      .++.++++++.|+++||+.+++++|++.+ ++.+..+. .+++.+++++.+.|.+.+.+.- .+++. .+|++++|+|||
T Consensus        38 ~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~-~~g~vi~lvG~~  114 (296)
T 2px0_A           38 LPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGG-LTEENVVGKLQEILCDMLPSAD-KWQEP-IHSKYIVLFGST  114 (296)
T ss_dssp             -CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSC-CCTTTHHHHHHHHHHTTSCCGG-GSCCC-CCSSEEEEEEST
T ss_pred             cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHHHHhCCcc-ccccc-CCCcEEEEECCC
Confidence            45789999999999999999999999999 55565444 3567888999999988885432 23332 478999999999


Q ss_pred             CCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEE
Q psy2881         109 GVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIV  187 (302)
Q Consensus       109 GsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llll  187 (302)
                      ||||||++++||+.+.++.| +|.+.+.|+++.++.+|+..|++..++++....   ++. ....++++  +.+||++|+
T Consensus       115 GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~---~~~-~l~~al~~--~~~~dlvIi  188 (296)
T 2px0_A          115 GAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY---TKE-EFQQAKEL--FSEYDHVFV  188 (296)
T ss_dssp             TSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS---SHH-HHHHHHHH--GGGSSEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecC---CHH-HHHHHHHH--hcCCCEEEE
Confidence            99999999999999998655 999999999999999999999998888765432   222 23444553  488999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHHhhcCCCeEEEecCCCCCchhHHHHh
Q psy2881         188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFSKILRITGLIITKLDGTTKGGILAAI  266 (302)
Q Consensus       188 DEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~~~~~~~~~i~tk~d~~~~~g~~~~~  266 (302)
                      |+||..+.....+.++.++..      ...++...+|++++.+.+.+.+. +.|. .+++.++|+||+|++.++|.++++
T Consensus       189 DT~G~~~~~~~~~~el~~~l~------~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~  261 (296)
T 2px0_A          189 DTAGRNFKDPQYIDELKETIP------FESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNI  261 (296)
T ss_dssp             ECCCCCTTSHHHHHHHHHHSC------CCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHH
T ss_pred             eCCCCChhhHHHHHHHHHHHh------hcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHH
Confidence            999955556666666665421      12366778888888877666664 4454 677889999999999999999999


Q ss_pred             hhHhCCceEEEecCCCC-CcCccCChHHHHHHhcc
Q psy2881         267 AKKYSIPLYFIGIGEKI-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       267 ~~~~~~pv~~~~~gq~v-~dl~~~~~~~~~~~l~~  300 (302)
                      +..+++||.|+++||++ +||++|+|++|+++|||
T Consensus       262 ~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg  296 (296)
T 2px0_A          262 LAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR  296 (296)
T ss_dssp             HHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred             HHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence            99999999999999999 99999999999999997

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=100.00  E-value=2.7e-33  Score=270.37  Aligned_cols=288  Identities=31%  Similarity=0.470  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCChHH----HHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDKNL----YNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
                      ||+.|.+++++   .+.+++....++++.    +++++..|+++||+.+++..+++.+++....++.    .+.+.+.++
T Consensus         2 ~~~~l~~~l~~---~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   78 (504)
T 2j37_W            2 VLADLGRKITS---ALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHA   78 (504)
T ss_dssp             ------CTTTT---TTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred             CHHHHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHH
Confidence            47777776654   355555556788754    7899999999999999999999999988776553    345778899


Q ss_pred             HHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC
Q psy2881          77 LHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP  156 (302)
Q Consensus        77 l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~  156 (302)
                      +.++|.+.+.+.-..+.+.-.++.+++|+|++|||||||+.+|+..+...+.+|.+.+.|+++.++.+|+..++...+++
T Consensus        79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~  158 (504)
T 2j37_W           79 VFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIP  158 (504)
T ss_dssp             HHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCce
Confidence            99999999876444444433567899999999999999999999999887889999999999999999999998888899


Q ss_pred             eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH
Q psy2881         157 VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ  236 (302)
Q Consensus       157 ~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~  236 (302)
                      ++......++.....+++..+...+++++|+|+||..+....+++++.++.+.      +.++.+.+|++++.+.+.+..
T Consensus       159 v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~------i~pd~vllVvDa~~g~~~~~~  232 (504)
T 2j37_W          159 FYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANA------IQPDNIVYVMDASIGQACEAQ  232 (504)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHH------HCCSEEEEEEETTCCTTHHHH
T ss_pred             EEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhh------hcCceEEEEEeccccccHHHH
Confidence            88766666777666667776655889999999999766666777777776542      257888999999998877777


Q ss_pred             HHHHHhhcCCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         237 IKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       237 ~~~f~~~~~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      ++.|.+..+++++|+||+|.+.++|.++++...+++||.|+++||.++|+.+|+|..++++++|.
T Consensus       233 a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~  297 (504)
T 2j37_W          233 AKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM  297 (504)
T ss_dssp             HHHHHHHHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT
T ss_pred             HHHHHhhcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCC
Confidence            88888777888999999999999999999999999999999999999999999999999998873

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=100.00  E-value=1.2e-33  Score=268.99  Aligned_cols=284  Identities=36%  Similarity=0.565  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHH
Q psy2881           7 TRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNVLH   78 (302)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~   78 (302)
                      +.|.+++++   .+.+++++..+++    +.+++++..|+++||+..+++++++.+++.....+    ......+...+.
T Consensus         2 ~~l~~~~~~---~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~   78 (432)
T 2v3c_C            2 DKLGENLNK---ALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVY   78 (432)
T ss_dssp             CHHHHHHHH---HHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHH
T ss_pred             hHHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHH
Confidence            445555543   3555665567776    68899999999999999999999999998876653    223344788899


Q ss_pred             HHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881          79 NLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI  158 (302)
Q Consensus        79 ~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~  158 (302)
                      +.+.+.+.....++++.-.++.+++++|++||||||++.+|++.+...+.+|.+.+.|+++.++.+|++.+++..+++++
T Consensus        79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~  158 (432)
T 2v3c_C           79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY  158 (432)
T ss_dssp             HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEE
T ss_pred             HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceE
Confidence            99988886432223333234579999999999999999999999998889999999999999999999888888888887


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH
Q psy2881         159 SEK-KITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI  237 (302)
Q Consensus       159 ~~~-~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~  237 (302)
                      ... ...++.....+.+..+  .++|++|+||||..+....++.++..+..      +..++.+.+|++++.|++.+...
T Consensus       159 ~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~------~~~~d~vllVvda~~g~~~~~~~  230 (432)
T 2v3c_C          159 GDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKE------ITNPDEIILVIDGTIGQQAGIQA  230 (432)
T ss_dssp             CCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTS------SSCCSEEEEEEEGGGGGGHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHH------HhcCcceeEEeeccccHHHHHHH
Confidence            764 3334322333445443  78999999999976666777777755421      24678888999998888777778


Q ss_pred             HHHHhhc-CCCeEEEecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         238 KEFSKIL-RITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       238 ~~f~~~~-~~~~~i~tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      +.|.... ++.++|+||+|++.++|.++++...++.|+.|+++||.++||.+|+|..++++++|.
T Consensus       231 ~~~~~~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~  295 (432)
T 2v3c_C          231 KAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGM  295 (432)
T ss_dssp             HHHHTTSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCS
T ss_pred             HHHhhcccCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCC
Confidence            8888777 778999999999999999999999999999999999999999999999999999984

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.92  E-value=1.5e-25  Score=197.13  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=102.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-------HHHHhcccCCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-------QLLILGKYNDV----  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-------ql~~~~~~~~~----  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+       .+.+..+...+    
T Consensus        19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~   98 (235)
T 3tif_A           19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL   98 (235)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred             eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence            4789999999999999999999999999999999999999999999998765432211       11111221110    


Q ss_pred             Cee--------ec-------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         156 PVI--------SE-------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       156 ~~~--------~~-------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                      .+.        ..                               .....-.+..+-+||||++.+|+++|+|||+   |+
T Consensus        99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  178 (235)
T 3tif_A           99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS  178 (235)
T ss_dssp             CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            000        00                               0001112222334999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+...+++.|+++.+..+.+++++|||+..
T Consensus       179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~  208 (235)
T 3tif_A          179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINV  208 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEcCCHHH
Confidence            999999999999987778999999999764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.91  E-value=8.2e-25  Score=195.71  Aligned_cols=140  Identities=14%  Similarity=0.169  Sum_probs=104.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH---HhcccCCCCe------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL---ILGKYNDVPV------  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~---~~~~~~~~~~------  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+..+   ++.+...+.+      
T Consensus        25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  104 (266)
T 4g1u_C           25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE  104 (266)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence            5789999999999999999999999999999999999999999999998875433221111   1111111100      


Q ss_pred             ---eec--CCCCC--------------------------HHHHHHHHHHHHHhC------CCCeEEEcCCC---CccchH
Q psy2881         158 ---ISE--KKITD--------------------------PAAIAFNAINIAQKK------NTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       158 ---~~~--~~~~~--------------------------~~~~~~~~la~al~~------~~~llllDEP~---d~~~~~  197 (302)
                         +..  .....                          -.+..+-+||||++.      +|++||+|||+   |+.+..
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~  184 (266)
T 4g1u_C          105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ  184 (266)
T ss_dssp             HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred             HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence               000  00011                          112222239999999      99999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|+++.+..+.+++++|||+..+..
T Consensus       185 ~i~~~l~~l~~~~~~tvi~vtHdl~~~~~  213 (266)
T 4g1u_C          185 HTLRLLRQLTRQEPLAVCCVLHDLNLAAL  213 (266)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEEEcCHHHHHH
Confidence            99999999987766799999999877654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.91  E-value=2.5e-25  Score=206.41  Aligned_cols=137  Identities=17%  Similarity=0.157  Sum_probs=105.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK----  162 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~----  162 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+ +..+.+.  +.++++..    
T Consensus        42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~-~~~~r~~--Ig~v~Q~~~l~~  118 (366)
T 3tui_C           42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE-LTKARRQ--IGMIFQHFNLLS  118 (366)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH-HHHHHTT--EEEECSSCCCCT
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHHHhCc--EEEEeCCCccCC
Confidence            3789999999999999999999999999999999999999999999999876543321 1111111  11111100    


Q ss_pred             ---------------C-----------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         163 ---------------I-----------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       163 ---------------~-----------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                     .                             ..-.+..+-+||||++.+|++||+|||+   |+.+
T Consensus       119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~  198 (366)
T 3tui_C          119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT  198 (366)
T ss_dssp             TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence                           0                             0111122223999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ...+++.|+++++..|.|++++|||+..+..
T Consensus       199 ~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~  229 (366)
T 3tui_C          199 TRSILELLKDINRRLGLTILLITHEMDVVKR  229 (366)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            9999999999988779999999999987765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.90  E-value=6.3e-25  Score=191.73  Aligned_cols=137  Identities=17%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-------HHHHHhcccCCCC---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-------EQLLILGKYNDVP---  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-------~ql~~~~~~~~~~---  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......       .++.+..+...+.   
T Consensus        18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~   97 (224)
T 2pcj_A           18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL   97 (224)
T ss_dssp             EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence            578999999999999999999999999999999999999999999999887543221       1111122221110   


Q ss_pred             -e-----e-ecCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 -V-----I-SEKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 -~-----~-~~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                       +     + .......                             ..+..+-+||+|++.+|+++|+|||+   |+.+..
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  177 (224)
T 2pcj_A           98 TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK  177 (224)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHH
T ss_pred             CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence             0     0 0000000                             11111123999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|+++.+. +.+++++|||...+
T Consensus       178 ~~~~~l~~l~~~-g~tvi~vtHd~~~~  203 (224)
T 2pcj_A          178 RVMDIFLKINEG-GTSIVMVTHERELA  203 (224)
T ss_dssp             HHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHC-CCEEEEEcCCHHHH
Confidence            999999999776 88999999986654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.90  E-value=1.2e-24  Score=195.39  Aligned_cols=142  Identities=18%  Similarity=0.106  Sum_probs=103.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-hHHHHHH----HhcccCCCCee---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-AAYEQLL----ILGKYNDVPVI---  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-~~~~ql~----~~~~~~~~~~~---  158 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... .....++    +..|.....++   
T Consensus        22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t  101 (275)
T 3gfo_A           22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS  101 (275)
T ss_dssp             EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence            378999999999999999999999999999999999999999999999887421 1111111    11111100000   


Q ss_pred             --------ecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         159 --------SEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       159 --------~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                              ........                             .+..+-+||+|++.+|++||+|||+   |+.+...
T Consensus       102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~  181 (275)
T 3gfo_A          102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE  181 (275)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence                    00000111                             1111223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.|+++.+..+.+++++|||+..+...+
T Consensus       182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~  211 (275)
T 3gfo_A          182 IMKLLVEMQKELGITIIIATHDIDIVPLYC  211 (275)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCCSSGGGGC
T ss_pred             HHHHHHHHHhhCCCEEEEEecCHHHHHHhC
Confidence            999999997444899999999998876644

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.90  E-value=9.5e-25  Score=203.66  Aligned_cols=142  Identities=11%  Similarity=0.135  Sum_probs=106.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql  146 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....                    ..+++
T Consensus        17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni   96 (381)
T 3rlf_A           17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM   96 (381)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHH
T ss_pred             EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHH
Confidence            4789999999999999999999999999999999999999999999998764211                    11111


Q ss_pred             H------------------HhcccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 L------------------ILGKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .                  .+.+..++.-+...  ....-.+..+-+||||++.+|++||+|||+   |+..+..++++|
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l  176 (381)
T 3rlf_A           97 SFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  176 (381)
T ss_dssp             THHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            1                  11111111110000  011223334445999999999999999998   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhcCC
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.+..+.+++++|||...+...+
T Consensus       177 ~~l~~~~g~tii~vTHd~~ea~~~a  201 (381)
T 3rlf_A          177 SRLHKRLGRTMIYVTHDQVEAMTLA  201 (381)
T ss_dssp             HHHHHHHCCEEEEECSCHHHHHHHC
T ss_pred             HHHHHhCCCEEEEEECCHHHHHHhC
Confidence            9998888999999999988776533

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.90  E-value=1.5e-24  Score=200.90  Aligned_cols=141  Identities=11%  Similarity=0.133  Sum_probs=103.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC----Ch--------------------hH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF----RA--------------------AA  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~----~~--------------------~~  142 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.    ..                    ..
T Consensus        18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV   97 (359)
T 3fvq_A           18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV   97 (359)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence            4789999999999999999999999999999999999999999999997751    10                    01


Q ss_pred             HHHHHHhc------------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         143 YEQLLILG------------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       143 ~~ql~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                      .+.+.+..                  +..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+..+
T Consensus        98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l  177 (359)
T 3fvq_A           98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI  177 (359)
T ss_dssp             HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            11111100                  0000000000  0001112223334999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++|.++.+..+.+++++|||...+...
T Consensus       178 ~~~l~~~~~~~g~tvi~vTHd~~ea~~~  205 (359)
T 3fvq_A          178 REDMIAALRANGKSAVFVSHDREEALQY  205 (359)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            9999998887899999999998877653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.89  E-value=7.4e-24  Score=188.67  Aligned_cols=141  Identities=14%  Similarity=0.147  Sum_probs=103.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----C--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----P--  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~--  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.    +.+..+...+    .  
T Consensus        21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  100 (257)
T 1g6h_A           21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL  100 (257)
T ss_dssp             EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred             eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHH
Confidence            47899999999999999999999999999999999999999999999987643221111    1111221110    0  


Q ss_pred             ----eeecC--CC------------CCH--HHHH--------------------------HHHHHHHHhCCCCeEEEcCC
Q psy2881         157 ----VISEK--KI------------TDP--AAIA--------------------------FNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       157 ----~~~~~--~~------------~~~--~~~~--------------------------~~~la~al~~~~~llllDEP  190 (302)
                          +....  ..            ...  ...+                          +-+||+|++.+|+++|+|||
T Consensus       101 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP  180 (257)
T 1g6h_A          101 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP  180 (257)
T ss_dssp             HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             HHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                00000  00            000  1111                          11299999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +   |+.+...+++.|+++++. +.+++++|||+..+...+
T Consensus       181 ts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~  220 (257)
T 1g6h_A          181 IAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYI  220 (257)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhC
Confidence            8   999999999999999765 889999999988765543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.89  E-value=5.1e-24  Score=187.86  Aligned_cols=138  Identities=17%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH----HHHhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ----LLILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q----l~~~~~~~~~----~~-  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......+.    +.+..+...+    .+ 
T Consensus        20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   99 (240)
T 1ji0_A           20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY   99 (240)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence            47899999999999999999999999999999999999999999999987643222111    1111121110    00 


Q ss_pred             ----eec--C-CC---------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         158 ----ISE--K-KI---------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       158 ----~~~--~-~~---------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                          +..  . ..                           ....+..+-+||+|++.+|+++|+|||+   |+.+...++
T Consensus       100 enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~  179 (240)
T 1ji0_A          100 ENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF  179 (240)
T ss_dssp             HHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence                000  0 00                           0111112223999999999999999998   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhh
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +.|+++.+ .+.+++++|||...+.
T Consensus       180 ~~l~~~~~-~g~tvi~vtHd~~~~~  203 (240)
T 1ji0_A          180 EVIQKINQ-EGTTILLVEQNALGAL  203 (240)
T ss_dssp             HHHHHHHH-TTCCEEEEESCHHHHH
T ss_pred             HHHHHHHH-CCCEEEEEecCHHHHH
Confidence            99999976 5889999999875543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.89  E-value=1.2e-23  Score=187.18  Aligned_cols=141  Identities=15%  Similarity=0.105  Sum_probs=101.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--HHHHHHhcccCC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--YEQLLILGKYND----------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--~~ql~~~~~~~~----------  154 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....  ..++.+..+...          
T Consensus        29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en  108 (256)
T 1vpl_A           29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY  108 (256)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred             EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence            47899999999999999999999999999999999999999999999987643110  000111111111          


Q ss_pred             ---------------------------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         155 ---------------------------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       155 ---------------------------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                                                 +.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus       109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~  188 (256)
T 1vpl_A          109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI  188 (256)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence                                       00000  00001112222223999999999999999998   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      |+++.+. +.+++++|||+..+...+
T Consensus       189 l~~l~~~-g~tiiivtHd~~~~~~~~  213 (256)
T 1vpl_A          189 LKQASQE-GLTILVSSHNMLEVEFLC  213 (256)
T ss_dssp             HHHHHHT-TCEEEEEECCHHHHTTTC
T ss_pred             HHHHHhC-CCEEEEEcCCHHHHHHHC
Confidence            9998754 889999999987765533

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.89  E-value=6e-24  Score=197.30  Aligned_cols=140  Identities=13%  Similarity=0.112  Sum_probs=104.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql  146 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....                    ..+.+
T Consensus        17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni   96 (359)
T 2yyz_A           17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENI   96 (359)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHH
T ss_pred             EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence            4789999999999999999999999999999999999999999999997753211                    11222


Q ss_pred             HHhc------------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LILG------------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+..                  +..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+..++++|
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  176 (359)
T 2yyz_A           97 AFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI  176 (359)
T ss_dssp             HGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            1110                  0011100000  0011122333345999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.+..+.+++++|||...+..
T Consensus       177 ~~l~~~~g~tvi~vTHd~~~~~~  199 (359)
T 2yyz_A          177 KHLQQELGITSVYVTHDQAEAMT  199 (359)
T ss_dssp             HHHHHHHCCEEEEEESCHHHHHH
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHH
Confidence            99987778999999999877654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.89  E-value=5.1e-24  Score=197.36  Aligned_cols=140  Identities=11%  Similarity=0.123  Sum_probs=104.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------hHHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------AAYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------~~~~ql  146 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...                    ...+.+
T Consensus        29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  108 (355)
T 1z47_A           29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV  108 (355)
T ss_dssp             TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence            478999999999999999999999999999999999999999999998775321                    111111


Q ss_pred             HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+                  +.+..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+..++++|
T Consensus       109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  188 (355)
T 1z47_A          109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV  188 (355)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11                  111111110000  0011223334445999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.+..+.+++++|||...+..
T Consensus       189 ~~l~~~~g~tvi~vTHd~~~a~~  211 (355)
T 1z47_A          189 RQVHDEMGVTSVFVTHDQEEALE  211 (355)
T ss_dssp             HHHHHHHTCEEEEECSCHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCHHHHHH
Confidence            99987778999999999877654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.89  E-value=1.9e-23  Score=186.49  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC--Chh---HHHHHHHhcccCCCC----e
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF--RAA---AYEQLLILGKYNDVP----V  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~--~~~---~~~ql~~~~~~~~~~----~  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.  ...   ...++.+..+...+.    +
T Consensus        38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv  117 (263)
T 2olj_A           38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV  117 (263)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence            4789999999999999999999999999999999999999999999998763  111   011122222221100    0


Q ss_pred             -----e-e-cCCCCC-----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         158 -----I-S-EKKITD-----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       158 -----~-~-~~~~~~-----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                           + . ......                             ..+..+-+||+|++.+|+++|+|||+   |+.+...
T Consensus       118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~  197 (263)
T 2olj_A          118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE  197 (263)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence                 0 0 000001                             11111223999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +++.|+++.+. +.+++++|||+..+.
T Consensus       198 ~~~~l~~l~~~-g~tvi~vtHd~~~~~  223 (263)
T 2olj_A          198 VLSVMKQLANE-GMTMVVVTHEMGFAR  223 (263)
T ss_dssp             HHHHHHHHHHT-TCEEEEECSCHHHHH
T ss_pred             HHHHHHHHHhC-CCEEEEEcCCHHHHH
Confidence            99999999766 889999999876543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.89  E-value=9.9e-24  Score=188.34  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC----------hhH------HHHHHHhc
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR----------AAA------YEQLLILG  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~----------~~~------~~ql~~~~  150 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..          ...      ..++.+..
T Consensus        20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   99 (262)
T 1b0u_A           20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF   99 (262)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence            47899999999999999999999999999999999999999999999987641          110      11111111


Q ss_pred             ccCCC----Ce-----e-e-cCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881         151 KYNDV----PV-----I-S-EKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       151 ~~~~~----~~-----~-~-~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDE  189 (302)
                      +...+    .+     + . ....                              ....+..+-+||+|++.+|+++|+||
T Consensus       100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE  179 (262)
T 1b0u_A          100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE  179 (262)
T ss_dssp             SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            21110    00     0 0 0000                              01112222249999999999999999


Q ss_pred             CC---CccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      |+   |+.+...+++.|+++.+. +.+++++|||+..+.
T Consensus       180 Pts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~  217 (262)
T 1b0u_A          180 PTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFAR  217 (262)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHH
T ss_pred             CCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence            98   999999999999999765 889999999876643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.89  E-value=5.5e-24  Score=197.77  Aligned_cols=140  Identities=14%  Similarity=0.160  Sum_probs=104.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh--------------------HHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA--------------------AYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~--------------------~~~ql  146 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....                    ..+.+
T Consensus        17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni   96 (362)
T 2it1_A           17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI   96 (362)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred             EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence            4789999999999999999999999999999999999999999999997753211                    11111


Q ss_pred             HH------------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         147 LI------------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       147 ~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+                  +.+..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+..+++.|
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  176 (362)
T 2it1_A           97 AFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL  176 (362)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            11                  111111110000  0011223333445999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.+..+.+++++|||...+..
T Consensus       177 ~~l~~~~g~tvi~vTHd~~~a~~  199 (362)
T 2it1_A          177 KRLQKELGITTVYVTHDQAEALA  199 (362)
T ss_dssp             HHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HHHHHhCCCEEEEECCCHHHHHH
Confidence            99987778999999999877654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.88  E-value=1.6e-23  Score=181.46  Aligned_cols=141  Identities=16%  Similarity=0.176  Sum_probs=105.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC-----------------ChhHHHHHHHh
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF-----------------RAAAYEQLLIL  149 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~-----------------~~~~~~ql~~~  149 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+..                 .....+.+...
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~  102 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV  102 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999886531                 11223333221


Q ss_pred             ----------------cccCCCCeee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHH
Q psy2881         150 ----------------GKYNDVPVIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV  209 (302)
Q Consensus       150 ----------------~~~~~~~~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~  209 (302)
                                      .+.+++.-.. ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|+++.+.
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~  182 (214)
T 1sgw_A          103 ASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE  182 (214)
T ss_dssp             HHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence                            1112221110 00112334555566999999999999999998   999999999999998764


Q ss_pred             hchhhccccceeehhhcCC
Q psy2881         210 IEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       210 ~~~~i~~~~hd~~lvl~~~  228 (302)
                       +.+++++|||...+...+
T Consensus       183 -g~tiiivtHd~~~~~~~~  200 (214)
T 1sgw_A          183 -KGIVIISSREELSYCDVN  200 (214)
T ss_dssp             -HSEEEEEESSCCTTSSEE
T ss_pred             -CCEEEEEeCCHHHHHHhC
Confidence             789999999988765543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.88  E-value=7.8e-24  Score=197.40  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=101.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-HHHHHhcccCCC----C-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-EQLLILGKYNDV----P-----  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~~----~-----  156 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+.+..|...+    .     
T Consensus        25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  104 (372)
T 1v43_A           25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI  104 (372)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence            478999999999999999999999999999999999999999999999876422110 001111111000    0     


Q ss_pred             -eeecCCCCCH-----------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         157 -VISEKKITDP-----------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       157 -~~~~~~~~~~-----------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                       +.........                             .+..+-+||||++.+|+++|+|||+   |+..+..++++|
T Consensus       105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  184 (372)
T 1v43_A          105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI  184 (372)
T ss_dssp             HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence             0000000010                             0111223999999999999999997   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.+..+.+++++|||...+..
T Consensus       185 ~~l~~~~g~tvi~vTHd~~~a~~  207 (372)
T 1v43_A          185 KKLQQKLKVTTIYVTHDQVEAMT  207 (372)
T ss_dssp             HHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HHHHHhCCCEEEEEeCCHHHHHH
Confidence            99988778999999999877654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.88  E-value=1.4e-23  Score=188.96  Aligned_cols=141  Identities=16%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC--ChhHHH---HHHHhcccC----CC--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF--RAAAYE---QLLILGKYN----DV--  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~--~~~~~~---ql~~~~~~~----~~--  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.  .....+   ++.+..+..    ..  
T Consensus        35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l  114 (279)
T 2ihy_A           35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE  114 (279)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred             EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence            4789999999999999999999999999999999999999999999998764  211110   011111110    00  


Q ss_pred             Ce--------ee-----cCCCC--------------------------CHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         156 PV--------IS-----EKKIT--------------------------DPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       156 ~~--------~~-----~~~~~--------------------------~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                      .+        ..     .....                          ...+..+-+||+|++.+|+++|+|||+   |+
T Consensus       115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~  194 (279)
T 2ihy_A          115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF  194 (279)
T ss_dssp             BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred             CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence            00        00     00000                          001111123999999999999999998   99


Q ss_pred             cchHHHHHHHHHHHHHhchhh--ccccceeehhhcCC
Q psy2881         194 STQSHLMRELKKIKKVIEKKI--FELPYEIFLIIDGN  228 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i--~~~~hd~~lvl~~~  228 (302)
                      .+...+++.|+++.+. +.++  +++|||...+...+
T Consensus       195 ~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~  230 (279)
T 2ihy_A          195 IARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANF  230 (279)
T ss_dssp             HHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTC
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhC
Confidence            9999999999999776 8899  99999988765544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.88  E-value=3.3e-23  Score=185.34  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=103.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------hHHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------AAYEQL  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------~~~~ql  146 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...                    ...+.+
T Consensus        21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl  100 (266)
T 2yz2_A           21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV  100 (266)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence            478999999999999999999999999999999999999999999988664211                    112222


Q ss_pred             HHhcc-----------------cCCCC--eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         147 LILGK-----------------YNDVP--VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       147 ~~~~~-----------------~~~~~--~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                      .....                 ..++.  -+..  .......+..+-+||+|++.+|+++|+|||+   |+.+...+++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~  180 (266)
T 2yz2_A          101 AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI  180 (266)
T ss_dssp             HHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHH
Confidence            21110                 01111  0000  0011223334445999999999999999998   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      |+++.+. +.+++++|||...+...
T Consensus       181 l~~l~~~-g~tii~vtHd~~~~~~~  204 (266)
T 2yz2_A          181 VEKWKTL-GKTVILISHDIETVINH  204 (266)
T ss_dssp             HHHHHHT-TCEEEEECSCCTTTGGG
T ss_pred             HHHHHHc-CCEEEEEeCCHHHHHHh
Confidence            9999766 88999999998876653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.88  E-value=3.2e-23  Score=182.73  Aligned_cols=137  Identities=15%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh--------------------hHHHHHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA--------------------AAYEQLL  147 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~--------------------~~~~ql~  147 (302)
                      +++++||++++ ++++|+||||||||||+++|+|+++|++|+|.+.|.++...                    ...+.+.
T Consensus        14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~   92 (240)
T 2onk_A           14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA   92 (240)
T ss_dssp             EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred             EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence            47899999999 99999999999999999999999999999999998765311                    1111111


Q ss_pred             H----------------hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHH
Q psy2881         148 I----------------LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKI  206 (302)
Q Consensus       148 ~----------------~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l  206 (302)
                      .                +.+..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l  172 (240)
T 2onk_A           93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            1                00111111000  00011122333334999999999999999998   999999999999999


Q ss_pred             HHHhchhhccccceeehhh
Q psy2881         207 KKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       207 ~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+..+.+++++|||...+.
T Consensus       173 ~~~~g~tvi~vtHd~~~~~  191 (240)
T 2onk_A          173 QREFDVPILHVTHDLIEAA  191 (240)
T ss_dssp             HHHHTCCEEEEESCHHHHH
T ss_pred             HHhcCCEEEEEeCCHHHHH
Confidence            7766889999999876544

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.88  E-value=6.5e-24  Score=196.93  Aligned_cols=139  Identities=14%  Similarity=0.077  Sum_probs=102.6

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC-----h--------------------hH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR-----A--------------------AA  142 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~-----~--------------------~~  142 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++..     .                    ..
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv   99 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA   99 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence            7899999999999999999999999999999999999999999998866421     0                    11


Q ss_pred             HHHHHHhc------------------ccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH
Q psy2881         143 YEQLLILG------------------KYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       143 ~~ql~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l  199 (302)
                      .+.+.+..                  +..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+..+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l  179 (353)
T 1oxx_K          100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA  179 (353)
T ss_dssp             HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            11111100                  0011100000  0001122233334999999999999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhc
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ++.|+++.+..+.+++++|||...+..
T Consensus       180 ~~~l~~l~~~~g~tvi~vTHd~~~~~~  206 (353)
T 1oxx_K          180 RALVKEVQSRLGVTLLVVSHDPADIFA  206 (353)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            999999987778999999999876654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.88  E-value=1e-23  Score=196.81  Aligned_cols=140  Identities=11%  Similarity=0.165  Sum_probs=103.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC------h--------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR------A--------------------  140 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~------~--------------------  140 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..      .                    
T Consensus        17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l   96 (372)
T 1g29_1           17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM   96 (372)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC
Confidence            47899999999999999999999999999999999999999999998866421      0                    


Q ss_pred             hHHHHHHHh------------------cccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         141 AAYEQLLIL------------------GKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       141 ~~~~ql~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      ...+.+.+.                  .+..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+.
T Consensus        97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~  176 (372)
T 1g29_1           97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV  176 (372)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHH
Confidence            111111110                  00011100000  0011122333334999999999999999997   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .++++|+++.+..+.+++++|||...+..
T Consensus       177 ~l~~~l~~l~~~~g~tvi~vTHd~~~a~~  205 (372)
T 1g29_1          177 RMRAELKKLQRQLGVTTIYVTHDQVEAMT  205 (372)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            99999999988778999999999877654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.88  E-value=1.2e-23  Score=194.53  Aligned_cols=139  Identities=16%  Similarity=0.105  Sum_probs=103.5

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH--------------------HHHHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA--------------------YEQLL  147 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~--------------------~~ql~  147 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....                    .+.+.
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~   94 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE   94 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHH
Confidence            6889999999999999999999999999999999999999999999987643211                    11111


Q ss_pred             H---------------hcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         148 I---------------LGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       148 ~---------------~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                      +               +.+..++.-+..  .....-.+..+-+||||++.+|+++|+|||+   |+..+..+++.|+++.
T Consensus        95 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~  174 (348)
T 3d31_A           95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH  174 (348)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            1               000111110000  0011122333345999999999999999997   9999999999999998


Q ss_pred             HHhchhhccccceeehhhc
Q psy2881         208 KVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~  226 (302)
                      +..+.+++++|||...+..
T Consensus       175 ~~~g~tii~vTHd~~~~~~  193 (348)
T 3d31_A          175 KKNKLTVLHITHDQTEARI  193 (348)
T ss_dssp             HHTTCEEEEEESCHHHHHH
T ss_pred             HhcCCEEEEEeCCHHHHHH
Confidence            7778999999999876654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.88  E-value=9.3e-23  Score=180.51  Aligned_cols=136  Identities=19%  Similarity=0.187  Sum_probs=101.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCC-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVP-------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~-------  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   .++.+..+...+.       
T Consensus        23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  102 (247)
T 2ff7_A           23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN  102 (247)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence            478999999999999999999999999999999999999999999999876432211   1111122211100       


Q ss_pred             --eeec----------------------------------CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 --VISE----------------------------------KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 --~~~~----------------------------------~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                        +...                                  .......+..+-+||||++.+|+++|+|||+   |+.+..
T Consensus       103 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~  182 (247)
T 2ff7_A          103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH  182 (247)
T ss_dssp             HTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred             HhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence              0000                                  0112223333445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|+++.  .+.+++++|||...+
T Consensus       183 ~i~~~l~~~~--~g~tviivtH~~~~~  207 (247)
T 2ff7_A          183 VIMRNMHKIC--KGRTVIIIAHRLSTV  207 (247)
T ss_dssp             HHHHHHHHHH--TTSEEEEECSSGGGG
T ss_pred             HHHHHHHHHc--CCCEEEEEeCCHHHH
Confidence            9999999984  378999999998765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.87  E-value=4.7e-23  Score=184.79  Aligned_cols=139  Identities=18%  Similarity=0.160  Sum_probs=101.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCCCC-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYNDVP-------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~~~-------  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....   ..++.+..+...+.       
T Consensus        33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  112 (271)
T 2ixe_A           33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN  112 (271)
T ss_dssp             CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred             eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHH
Confidence            47899999999999999999999999999999999999999999999977532111   11111111211100       


Q ss_pred             --ee-----------------------------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         157 --VI-----------------------------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       157 --~~-----------------------------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                        +.                                   .........+..+-+||||++.+|++||+|||+   |+.+.
T Consensus       113 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~  192 (271)
T 2ixe_A          113 IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ  192 (271)
T ss_dssp             HHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             HhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence              00                                   000011122333345999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..+++.|+++.+..+.+++++|||...+.
T Consensus       193 ~~i~~~l~~~~~~~g~tviivtHd~~~~~  221 (271)
T 2ixe_A          193 LRVQRLLYESPEWASRTVLLITQQLSLAE  221 (271)
T ss_dssp             HHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred             HHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence            99999999886545789999999977654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.87  E-value=7.5e-23  Score=180.69  Aligned_cols=136  Identities=14%  Similarity=0.150  Sum_probs=100.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh---------------------hHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA---------------------AAYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~---------------------~~~~q  145 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...                     ...+.
T Consensus        16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en   95 (243)
T 1mv5_A           16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN   95 (243)
T ss_dssp             CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred             ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHH
Confidence            478999999999999999999999999999999999999999999998764211                     11111


Q ss_pred             HHHh-------------cccCCCC-eee------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         146 LLIL-------------GKYNDVP-VIS------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       146 l~~~-------------~~~~~~~-~~~------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                      +...             .+..++. +..            ........+..+-+||||++.+|+++|+|||+   |+.+.
T Consensus        96 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~  175 (243)
T 1mv5_A           96 LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE  175 (243)
T ss_dssp             TTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSC
T ss_pred             HhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence            1110             0000000 000            00122334455556999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ..+++.|.++.  .+.+++++|||...+
T Consensus       176 ~~i~~~l~~~~--~~~tvi~vtH~~~~~  201 (243)
T 1mv5_A          176 SMVQKALDSLM--KGRTTLVIAHRLSTI  201 (243)
T ss_dssp             CHHHHHHHHHH--TTSEEEEECCSHHHH
T ss_pred             HHHHHHHHHhc--CCCEEEEEeCChHHH
Confidence            99999999986  378999999986543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.87  E-value=5.6e-23  Score=182.07  Aligned_cols=137  Identities=17%  Similarity=0.149  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCCC----e--
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDVP----V--  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~~----~--  157 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|+ |+|.+.|.++......   .++.+..+...+.    +  
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   92 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH   92 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence            4789999999999999999999999999999999999999 9999998775322111   1111222221110    0  


Q ss_pred             ---eecCCC-------------------------CCHHHHHHHHHHHHHhCCCC-------eEEEcCCC---CccchHHH
Q psy2881         158 ---ISEKKI-------------------------TDPAAIAFNAINIAQKKNTD-------IVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       158 ---~~~~~~-------------------------~~~~~~~~~~la~al~~~~~-------llllDEP~---d~~~~~~l  199 (302)
                         +.....                         ....+..+-+||+|++.+|+       ++|+|||+   |+.+...+
T Consensus        93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l  172 (249)
T 2qi9_C           93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  172 (249)
T ss_dssp             HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred             HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence               000000                         11112222239999999999       99999998   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhh
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ++.|+++.+. +.+++++|||...+.
T Consensus       173 ~~~l~~l~~~-g~tviivtHd~~~~~  197 (249)
T 2qi9_C          173 DKILSALSQQ-GLAIVMSSHDLNHTL  197 (249)
T ss_dssp             HHHHHHHHHT-TCEEEEECSCHHHHH
T ss_pred             HHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence            9999999765 889999999977653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=7.4e-23  Score=186.25  Aligned_cols=138  Identities=12%  Similarity=0.148  Sum_probs=102.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCCCC-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYNDVP-------  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~~~-------  156 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+.......   ++.+..|...+.       
T Consensus        68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN  147 (306)
T 3nh6_A           68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADN  147 (306)
T ss_dssp             EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHH
T ss_pred             ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHH
Confidence            5789999999999999999999999999999999999999999999998875432211   111111111000       


Q ss_pred             ----------------------------------eeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         157 ----------------------------------VISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       157 ----------------------------------~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                        ....  .....-.+..+-+||||++.+|++||+|||+   |+.+..
T Consensus       148 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~  227 (306)
T 3nh6_A          148 IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER  227 (306)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHH
T ss_pred             HHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence                                              0000  0112223334445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|.++.+  +.|+++++|++..+..
T Consensus       228 ~i~~~l~~l~~--~~Tvi~itH~l~~~~~  254 (306)
T 3nh6_A          228 AIQASLAKVCA--NRTTIVVAHRLSTVVN  254 (306)
T ss_dssp             HHHHHHHHHHT--TSEEEEECCSHHHHHT
T ss_pred             HHHHHHHHHcC--CCEEEEEEcChHHHHc
Confidence            99999998854  6789999998876654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.86  E-value=2.1e-22  Score=178.77  Aligned_cols=139  Identities=14%  Similarity=0.149  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE------ecccC--C-ChhHHHHHHHhc-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL------AACDT--F-RAAAYEQLLILG-------  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l------~~~d~--~-~~~~~~ql~~~~-------  150 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+      ..++.  + .....+.+....       
T Consensus        19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~   98 (253)
T 2nq2_C           19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF   98 (253)
T ss_dssp             EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT
T ss_pred             eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccc
Confidence            5789999999999999999999999999999999999999999853      22221  1 223334433211       


Q ss_pred             ---------------ccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHh
Q psy2881         151 ---------------KYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVI  210 (302)
Q Consensus       151 ---------------~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~  210 (302)
                                     +..++.-..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|.++.+..
T Consensus        99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~  178 (253)
T 2nq2_C           99 AKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ  178 (253)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             cCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence                           111111000  00112233444455999999999999999998   9999999999999997655


Q ss_pred             chhhccccceeehhh
Q psy2881         211 EKKIFELPYEIFLII  225 (302)
Q Consensus       211 ~~~i~~~~hd~~lvl  225 (302)
                      +.+++++|||...+.
T Consensus       179 g~tvi~vtHd~~~~~  193 (253)
T 2nq2_C          179 NMTVVFTTHQPNQVV  193 (253)
T ss_dssp             CCEEEEEESCHHHHH
T ss_pred             CCEEEEEecCHHHHH
Confidence            889999999977653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.86  E-value=1.1e-22  Score=180.25  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhH----------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAA----------------------  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~----------------------  142 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+  ++|++|+|.+.|.++.....                      
T Consensus        17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   96 (250)
T 2d2e_A           17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVT   96 (250)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCB
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCC
Confidence            578999999999999999999999999999999998  78999999999876532111                      


Q ss_pred             -HHHHHH---------------------hcccCCCC-e-eecC-CC-CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cc
Q psy2881         143 -YEQLLI---------------------LGKYNDVP-V-ISEK-KI-TDPAAIAFNAINIAQKKNTDIVIVDTSG---RL  193 (302)
Q Consensus       143 -~~ql~~---------------------~~~~~~~~-~-~~~~-~~-~~~~~~~~~~la~al~~~~~llllDEP~---d~  193 (302)
                       .+.+..                     +.+..++. - .... .. ....+..+-+||+|++.+|+++|+|||+   |+
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~  176 (250)
T 2d2e_A           97 IANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI  176 (250)
T ss_dssp             HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCH
T ss_pred             HHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence             111110                     00001110 0 0000 11 2223344456999999999999999997   99


Q ss_pred             cchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         194 STQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       194 ~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+...+++.|+++.+ .+.+++++|||...+..
T Consensus       177 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~  208 (250)
T 2d2e_A          177 DALKVVARGVNAMRG-PNFGALVITHYQRILNY  208 (250)
T ss_dssp             HHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGT
T ss_pred             HHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHH
Confidence            999999999999854 47899999999887654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.85  E-value=3.9e-22  Score=177.97  Aligned_cols=137  Identities=14%  Similarity=0.111  Sum_probs=100.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC------Chh------------HHHHHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF------RAA------------AYEQLLI  148 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~------~~~------------~~~ql~~  148 (302)
                      ++++++||+++ |++++|+||||||||||+++|+|++ |++|+|.+.|.++.      +.+            ..+.+..
T Consensus        19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~   96 (263)
T 2pjz_A           19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYL   96 (263)
T ss_dssp             EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHH
T ss_pred             eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHH
Confidence            47899999999 9999999999999999999999999 99999999885431      111            1222222


Q ss_pred             h--------------cccCCCC-eee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         149 L--------------GKYNDVP-VIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       149 ~--------------~~~~~~~-~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                      +              .+.+++. -..  ........+..+-+||+|++.+|+++|+|||+   |+.+...+++.|+++.+
T Consensus        97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~  176 (263)
T 2pjz_A           97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK  176 (263)
T ss_dssp             HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred             hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence            1              1112221 100  01112334555566999999999999999998   99999999998887743


Q ss_pred             HhchhhccccceeehhhcCCC
Q psy2881         209 VIEKKIFELPYEIFLIIDGNT  229 (302)
Q Consensus       209 ~~~~~i~~~~hd~~lvl~~~~  229 (302)
                          +++++|||...+...+.
T Consensus       177 ----tviivtHd~~~~~~~~d  193 (263)
T 2pjz_A          177 ----EGILVTHELDMLNLYKE  193 (263)
T ss_dssp             ----EEEEEESCGGGGGGCTT
T ss_pred             ----cEEEEEcCHHHHHHhcC
Confidence                89999999887765443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.85  E-value=2.7e-22  Score=179.49  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=101.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH--hhhCCCeEEEecccCCChhH----------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY--FKKRKKSVLLAACDTFRAAA----------------------  142 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~~~g~V~l~~~d~~~~~~----------------------  142 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+  ++|++|+|.+.|.++.....                      
T Consensus        34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t  113 (267)
T 2zu0_C           34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS  113 (267)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence            478999999999999999999999999999999999  46889999998876421110                      


Q ss_pred             -HHHHH-------------------------HhcccCCCC--eeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC-
Q psy2881         143 -YEQLL-------------------------ILGKYNDVP--VISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG-  191 (302)
Q Consensus       143 -~~ql~-------------------------~~~~~~~~~--~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~-  191 (302)
                       .+.+.                         .+.+..++.  ......  .....+..+-+||+|++.+|+++|+|||+ 
T Consensus       114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts  193 (267)
T 2zu0_C          114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS  193 (267)
T ss_dssp             HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred             HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence             01110                         001111221  001111  13344555566999999999999999998 


Q ss_pred             --CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         192 --RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       192 --d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                        |+.+...+++.|+++.+. +.+++++|||...+..
T Consensus       194 ~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~  229 (267)
T 2zu0_C          194 GLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDY  229 (267)
T ss_dssp             TCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGT
T ss_pred             CCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHh
Confidence              999999999999988543 7899999999877644

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.85  E-value=5.2e-22  Score=176.96  Aligned_cols=135  Identities=16%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------------------HHHH
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------------------AYEQ  145 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------------------~~~q  145 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++| +|+|.+.|.++....                     ..+.
T Consensus        34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  112 (260)
T 2ghi_A           34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYN  112 (260)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred             ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHH
Confidence            478999999999999999999999999999999999987 799999987653211                     1111


Q ss_pred             HHHhc------------ccCCCCe------------e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         146 LLILG------------KYNDVPV------------I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       146 l~~~~------------~~~~~~~------------~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                      +....            +..++.-            . .........+..+-+||||++.+|+++|+|||+   |+.+..
T Consensus       113 l~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~  192 (260)
T 2ghi_A          113 ILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY  192 (260)
T ss_dssp             HHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHH
T ss_pred             HhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence            11100            0000000            0 000112334444556999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+++.|+++.+  +.+++++|||...+
T Consensus       193 ~i~~~l~~l~~--~~tviivtH~~~~~  217 (260)
T 2ghi_A          193 LFQKAVEDLRK--NRTLIIIAHRLSTI  217 (260)
T ss_dssp             HHHHHHHHHTT--TSEEEEECSSGGGS
T ss_pred             HHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence            99999998853  68999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.84  E-value=4.7e-22  Score=174.03  Aligned_cols=135  Identities=13%  Similarity=0.124  Sum_probs=96.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------c--CCChhHHHHHHHhc--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------D--TFRAAAYEQLLILG--------  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d--~~~~~~~~ql~~~~--------  150 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.      +  .+.....+.+....        
T Consensus        22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~  101 (229)
T 2pze_A           22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYR  101 (229)
T ss_dssp             CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHH
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHH
Confidence            5789999999999999999999999999999999999999999988652      1  11122223322110        


Q ss_pred             ---ccCCC-------Ce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHHh
Q psy2881         151 ---KYNDV-------PV-----I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKVI  210 (302)
Q Consensus       151 ---~~~~~-------~~-----~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~~  210 (302)
                         +..++       +.     . .........+..+-+||||++.+|+++|+|||+   |+.+...+++.+ .++.  .
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~  179 (229)
T 2pze_A          102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A  179 (229)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--T
T ss_pred             HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--C
Confidence               01111       00     0 001223445566667999999999999999998   988888888763 4543  2


Q ss_pred             chhhccccceeeh
Q psy2881         211 EKKIFELPYEIFL  223 (302)
Q Consensus       211 ~~~i~~~~hd~~l  223 (302)
                      +.+++++|||...
T Consensus       180 ~~tvi~vtH~~~~  192 (229)
T 2pze_A          180 NKTRILVTSKMEH  192 (229)
T ss_dssp             TSEEEEECCCHHH
T ss_pred             CCEEEEEcCChHH
Confidence            6789999998654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.84  E-value=8.3e-22  Score=173.35  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=97.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------cC--CChhHHHHHHHhcc-------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------DT--FRAAAYEQLLILGK-------  151 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d~--~~~~~~~ql~~~~~-------  151 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.      +.  +.....+.+.....       
T Consensus        19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~   98 (237)
T 2cbz_A           19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYR   98 (237)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHH
T ss_pred             ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHH
Confidence            4789999999999999999999999999999999999999999988652      11  11222233322110       


Q ss_pred             ----cCCC-------C-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHH---HHHH
Q psy2881         152 ----YNDV-------P-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELK---KIKK  208 (302)
Q Consensus       152 ----~~~~-------~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~---~l~~  208 (302)
                          ..++       +     ... ........+..+-+||||++.+|+++|+|||+   |+.+...+++.|.   ++. 
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-  177 (237)
T 2cbz_A           99 SVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-  177 (237)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-
T ss_pred             HHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-
Confidence                0000       0     000 11123345566667999999999999999998   9888888888884   332 


Q ss_pred             Hhchhhccccceeehh
Q psy2881         209 VIEKKIFELPYEIFLI  224 (302)
Q Consensus       209 ~~~~~i~~~~hd~~lv  224 (302)
                       .+.+++++|||...+
T Consensus       178 -~~~tviivtH~~~~~  192 (237)
T 2cbz_A          178 -KNKTRILVTHSMSYL  192 (237)
T ss_dssp             -TTSEEEEECSCSTTG
T ss_pred             -CCCEEEEEecChHHH
Confidence             378999999997764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.82  E-value=3.7e-21  Score=180.35  Aligned_cols=136  Identities=10%  Similarity=0.130  Sum_probs=99.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~----------  153 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++ ++|+|.+.|.++......+   ++.+..|..          
T Consensus        35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en  113 (390)
T 3gd7_A           35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN  113 (390)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred             EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence            57899999999999999999999999999999999998 8899999998875433221   111111111          


Q ss_pred             -------------------CCCeeecCC-------------CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         154 -------------------DVPVISEKK-------------ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       154 -------------------~~~~~~~~~-------------~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                                         ++.-+....             ...-.+..+-+||||++.+|+++|+|||+   |+..+..
T Consensus       114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~  193 (390)
T 3gd7_A          114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI  193 (390)
T ss_dssp             HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHH
T ss_pred             hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence                               110000000             02334445556999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhh
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      +++.|+++.  .+.++++++||...+.
T Consensus       194 l~~~l~~~~--~~~tvi~vtHd~e~~~  218 (390)
T 3gd7_A          194 IRRTLKQAF--ADCTVILCEARIEAML  218 (390)
T ss_dssp             HHHHHHTTT--TTSCEEEECSSSGGGT
T ss_pred             HHHHHHHHh--CCCEEEEEEcCHHHHH
Confidence            999988764  3678999999976443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.81  E-value=2.7e-20  Score=183.62  Aligned_cols=136  Identities=14%  Similarity=0.204  Sum_probs=99.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......   .++.+..|...         
T Consensus       357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b5x_A          357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN  436 (582)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence            478999999999999999999999999999999999999999999999876422111   01111111100         


Q ss_pred             CCeee-----------------------------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         155 VPVIS-----------------------------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       155 ~~~~~-----------------------------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                      +.+..                                   ........+..+-+||||++++|+++|+|||+   |+.+.
T Consensus       437 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~  516 (582)
T 3b5x_A          437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE  516 (582)
T ss_pred             HhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence            00000                                   00011122333345999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ..+.+.|.++.+  ++|+++++|+...+
T Consensus       517 ~~i~~~l~~~~~--~~tvi~itH~~~~~  542 (582)
T 3b5x_A          517 RAIQAALDELQK--NKTVLVIAHRLSTI  542 (582)
T ss_pred             HHHHHHHHHHcC--CCEEEEEecCHHHH
Confidence            999999998853  78999999986654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=1.6e-20  Score=185.76  Aligned_cols=137  Identities=19%  Similarity=0.211  Sum_probs=101.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~--------  155 (302)
                      ++++|+||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......   .++.+..|...+        
T Consensus       369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  448 (598)
T 3qf4_B          369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN  448 (598)
T ss_dssp             CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHH
T ss_pred             ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHH
Confidence            478999999999999999999999999999999999999999999999876432211   111111111100        


Q ss_pred             -----C------------------eeecC------------CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 -----P------------------VISEK------------KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 -----~------------------~~~~~------------~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                           +                  +....            ....-.+..+-+||||++++|+++|+|||+   |+.+..
T Consensus       449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~  528 (598)
T 3qf4_B          449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK  528 (598)
T ss_dssp             HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence                 0                  00000            011223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+.+.|.++.  .++|+++++|+...+.
T Consensus       529 ~i~~~l~~~~--~~~t~i~itH~l~~~~  554 (598)
T 3qf4_B          529 SIQAAMWKLM--EGKTSIIIAHRLNTIK  554 (598)
T ss_dssp             HHHHHHHHHH--TTSEEEEESCCTTHHH
T ss_pred             HHHHHHHHHc--CCCEEEEEecCHHHHH
Confidence            9999999885  3789999999876543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.81  E-value=2.7e-20  Score=183.63  Aligned_cols=137  Identities=15%  Similarity=0.200  Sum_probs=100.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+......+   ++.+..|...         
T Consensus       357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en  436 (582)
T 3b60_A          357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN  436 (582)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence            4788999999999999999999999999999999999999999999998764322111   1111111110         


Q ss_pred             ----------------------CC-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         155 ----------------------VP-VI------------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       155 ----------------------~~-~~------------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                            +. +.            .........+..+-+||||++++|+++|+|||+   |+.+.
T Consensus       437 i~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~  516 (582)
T 3b60_A          437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE  516 (582)
T ss_dssp             HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred             HhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence                                  00 00            000111223334445999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..+.+.|+++.+  ++|+++++|+...+.
T Consensus       517 ~~i~~~l~~~~~--~~tvi~itH~~~~~~  543 (582)
T 3b60_A          517 RAIQAALDELQK--NRTSLVIAHRLSTIE  543 (582)
T ss_dssp             HHHHHHHHHHHT--TSEEEEECSCGGGTT
T ss_pred             HHHHHHHHHHhC--CCEEEEEeccHHHHH
Confidence            999999998853  789999999877543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=1.3e-20  Score=185.90  Aligned_cols=137  Identities=13%  Similarity=0.120  Sum_probs=101.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~--------  155 (302)
                      ++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......   .++.+..|...+        
T Consensus       357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  436 (587)
T 3qf4_A          357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN  436 (587)
T ss_dssp             CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence            477899999999999999999999999999999999999999999999886432211   111111111100        


Q ss_pred             ---------------------------------Ceee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 ---------------------------------PVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 ---------------------------------~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                       .-..  ......-.+..+-+||||++++|+++|+|||+   |+.+..
T Consensus       437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~  516 (587)
T 3qf4_A          437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEK  516 (587)
T ss_dssp             HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHH
T ss_pred             HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence                                             0000  00112233444455999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+++.|+++.  .++|+++++|+...+.
T Consensus       517 ~i~~~l~~~~--~~~tvi~itH~l~~~~  542 (587)
T 3qf4_A          517 RILDGLKRYT--KGCTTFIITQKIPTAL  542 (587)
T ss_dssp             HHHHHHHHHS--TTCEEEEEESCHHHHT
T ss_pred             HHHHHHHHhC--CCCEEEEEecChHHHH
Confidence            9999998874  3789999999876654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.81  E-value=6.6e-21  Score=172.29  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc------c--CCChhHHHHHHH---------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC------D--TFRAAAYEQLLI---------  148 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~------d--~~~~~~~~ql~~---------  148 (302)
                      +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.      +  .+.....+.+..         
T Consensus        51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~  130 (290)
T 2bbs_A           51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYR  130 (290)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHH
T ss_pred             ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHH
Confidence            56899999999999999999999999999999999999999999987652      1  112223333320         


Q ss_pred             -hcccCCCCe-ee------------cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH-HHHHHHh
Q psy2881         149 -LGKYNDVPV-IS------------EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL-KKIKKVI  210 (302)
Q Consensus       149 -~~~~~~~~~-~~------------~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L-~~l~~~~  210 (302)
                       ..+..++.- ..            ........+..+-+||||++.+|+++|+|||+   |+.+...+++.+ .++.  .
T Consensus       131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~  208 (290)
T 2bbs_A          131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A  208 (290)
T ss_dssp             HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T
T ss_pred             HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C
Confidence             000111100 00            01223445566667999999999999999998   988888888764 4443  2


Q ss_pred             chhhccccceeehh
Q psy2881         211 EKKIFELPYEIFLI  224 (302)
Q Consensus       211 ~~~i~~~~hd~~lv  224 (302)
                      +.++++++||...+
T Consensus       209 ~~tviivtHd~~~~  222 (290)
T 2bbs_A          209 NKTRILVTSKMEHL  222 (290)
T ss_dssp             TSEEEEECCCHHHH
T ss_pred             CCEEEEEecCHHHH
Confidence            77999999986654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.80  E-value=1.5e-20  Score=185.35  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=100.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+|||||||||++++|+|+++|++|+|.++|.|+......+   ++.+..|...         
T Consensus       355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en  434 (578)
T 4a82_A          355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN  434 (578)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence            4688999999999999999999999999999999999999999999998764322111   1111111100         


Q ss_pred             ---------------------C-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 ---------------------V-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ---------------------~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                           .       |      .-.......-.+..+-+||||++++|+++|+|||+   |+.+..
T Consensus       435 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~  514 (578)
T 4a82_A          435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES  514 (578)
T ss_dssp             HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence                                 0       0      00000112233444455999999999999999998   999988


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.+.++.+  ++|+++++|+...+..
T Consensus       515 ~i~~~l~~~~~--~~t~i~itH~l~~~~~  541 (578)
T 4a82_A          515 IIQEALDVLSK--DRTTLIVAHRLSTITH  541 (578)
T ss_dssp             HHHHHHHHHTT--TSEEEEECSSGGGTTT
T ss_pred             HHHHHHHHHcC--CCEEEEEecCHHHHHc
Confidence            99998888753  6789999999876543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.79  E-value=7.4e-20  Score=178.49  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=98.5

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-------C---ChhHHHHHHHhc-----------
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-------F---RAAAYEQLLILG-----------  150 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-------~---~~~~~~ql~~~~-----------  150 (302)
                      .+|++++|++++|+||||||||||+++|+|+++|++|+|.+.+..+       .   .....+.+....           
T Consensus       287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~  366 (538)
T 3ozx_A          287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF  366 (538)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH
T ss_pred             ccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHH
Confidence            3456789999999999999999999999999999999998765432       1   112223222211           


Q ss_pred             ----ccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         151 ----KYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       151 ----~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                          +..++.-..  ......-.+..+-+||+|++.+|++||+|||+   |+.++..+++.|+++++..+.+++++|||+
T Consensus       367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl  446 (538)
T 3ozx_A          367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL  446 (538)
T ss_dssp             HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence                111111000  00112234555667999999999999999998   999999999999999887788999999998


Q ss_pred             ehhhc
Q psy2881         222 FLIID  226 (302)
Q Consensus       222 ~lvl~  226 (302)
                      .++..
T Consensus       447 ~~~~~  451 (538)
T 3ozx_A          447 SIHDY  451 (538)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87665

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.77  E-value=3.8e-20  Score=154.51  Aligned_cols=131  Identities=6%  Similarity=0.021  Sum_probs=88.6

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHH------------HHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIG------------KLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI  158 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~------------~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~  158 (302)
                      ++||++++|++++|+||||||||||++            .+.|++.++.|.+.+.+....   ............+....
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~   77 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFD---VLHYIVSKRLQLGKLTV   77 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHH---HHHHHHHHHHHTTCCEE
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHH---HHHHHHHHHHhCCCeEE
Confidence            579999999999999999999999999            777887777665443321100   00000001112233222


Q ss_pred             ecCCCCC-HHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc----------------chHHHHHHHHHHHHHhchhhcccc
Q psy2881         159 SEKKITD-PAAIAFNAINIAQKKNTDIVIVDTSG---RLS----------------TQSHLMRELKKIKKVIEKKIFELP  218 (302)
Q Consensus       159 ~~~~~~~-~~~~~~~~la~al~~~~~llllDEP~---d~~----------------~~~~l~~~L~~l~~~~~~~i~~~~  218 (302)
                      ....... ..+..+-+||++++.+|+++++|||+   |+.                ....+++.++++.+. |.++++++
T Consensus        78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt  156 (171)
T 4gp7_A           78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL  156 (171)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE
T ss_pred             EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe
Confidence            2222222 23344556999999999999999997   666                447778888888766 89999999


Q ss_pred             ceeehhh
Q psy2881         219 YEIFLII  225 (302)
Q Consensus       219 hd~~lvl  225 (302)
                      ||+..+.
T Consensus       157 H~~~~~~  163 (171)
T 4gp7_A          157 NSPEEVE  163 (171)
T ss_dssp             CSHHHHH
T ss_pred             CCHHHhh
Confidence            9987654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.75  E-value=3.6e-19  Score=173.79  Aligned_cols=137  Identities=17%  Similarity=0.148  Sum_probs=94.0

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE---------EEecccCCCh------------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV---------LLAACDTFRA------------------  140 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V---------~l~~~d~~~~------------------  140 (302)
                      +++++| ++.+|++++|+||||||||||+++|+|+++|++|++         .+.|.+....                  
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~  115 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV  115 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence            578888 899999999999999999999999999999999984         1222211000                  


Q ss_pred             ---------hHHHHHH---------HhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         141 ---------AAYEQLL---------ILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       141 ---------~~~~ql~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                               ...+.+.         .+.+.+++....  ......-.+..+-+||+|++.+|++||+|||+   |+....
T Consensus       116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~  195 (538)
T 1yqt_A          116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL  195 (538)
T ss_dssp             GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred             hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence                     0000000         000001111000  00011223344445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|+++.+ .+.++++++||+.++..
T Consensus       196 ~l~~~L~~l~~-~g~tvi~vsHd~~~~~~  223 (538)
T 1yqt_A          196 NAARAIRRLSE-EGKSVLVVEHDLAVLDY  223 (538)
T ss_dssp             HHHHHHHHHHH-TTCEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence            99999999976 48899999999887654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=172.13  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=99.2

Q ss_pred             cCCCcceecCCC-----eEEEEEcCCCCCHHHHHHHHHhHhhhCCCe------EEEecccCC---ChhHHHHHHH-h---
Q psy2881          88 LEKPLIFKKCKP-----FVIMIVGVNGVGKTTTIGKLANYFKKRKKS------VLLAACDTF---RAAAYEQLLI-L---  149 (302)
Q Consensus        88 ~l~~i~l~~~~g-----~ii~lvGpnGsGKTTll~~Lag~~~~~~g~------V~l~~~d~~---~~~~~~ql~~-~---  149 (302)
                      ++++++|++.+|     ++++|+||||||||||+++|+|+++|++|+      |.+..++..   .....+.+.. +   
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~  441 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ  441 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcc
Confidence            466889988887     789999999999999999999999999885      444444321   1112222111 0   


Q ss_pred             ----------cccCCCCee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhh
Q psy2881         150 ----------GKYNDVPVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKI  214 (302)
Q Consensus       150 ----------~~~~~~~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i  214 (302)
                                .+.+++.-.  .......-.+..+-+||+|++.+|++||+|||+   |+.+...+++.|+++.+..+.++
T Consensus       442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tv  521 (608)
T 3j16_B          442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA  521 (608)
T ss_dssp             TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence                      011111100  011122334555667999999999999999998   99999999999999987778999


Q ss_pred             ccccceeehhhc
Q psy2881         215 FELPYEIFLIID  226 (302)
Q Consensus       215 ~~~~hd~~lvl~  226 (302)
                      +++|||+.++..
T Consensus       522 iivtHdl~~~~~  533 (608)
T 3j16_B          522 FIVEHDFIMATY  533 (608)
T ss_dssp             EEECSCHHHHHH
T ss_pred             EEEeCCHHHHHH
Confidence            999999887654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.75  E-value=3.1e-19  Score=176.35  Aligned_cols=135  Identities=21%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE------ecccCC---ChhHHHHHHH--------------
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL------AACDTF---RAAAYEQLLI--------------  148 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l------~~~d~~---~~~~~~ql~~--------------  148 (302)
                      ++|++.+|++++|+||||||||||+++|+|+++|++|+|.+      ..++..   .....+.+..              
T Consensus       375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~  454 (607)
T 3bk7_A          375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE  454 (607)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence            34446899999999999999999999999999999998753      223221   1112221111              


Q ss_pred             hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         149 LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       149 ~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +.+.+++.-..  ......-.+..+-+||+|++++|+++|+|||+   |+.++..+++.|+++.+..+.++++++||..+
T Consensus       455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  534 (607)
T 3bk7_A          455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  534 (607)
T ss_dssp             THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            11112221100  01112334555667999999999999999998   99999999999999987678899999999876


Q ss_pred             hhc
Q psy2881         224 IID  226 (302)
Q Consensus       224 vl~  226 (302)
                      +..
T Consensus       535 ~~~  537 (607)
T 3bk7_A          535 IDY  537 (607)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.75  E-value=2.2e-18  Score=168.26  Aligned_cols=135  Identities=21%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE------ecccCC---ChhHHHHHH--------------H
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL------AACDTF---RAAAYEQLL--------------I  148 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l------~~~d~~---~~~~~~ql~--------------~  148 (302)
                      ++|++.+|++++|+||||||||||+++|+|+++|++|+|.+      ..++..   .....+.+.              .
T Consensus       305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~  384 (538)
T 1yqt_A          305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE  384 (538)
T ss_dssp             CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence            34456899999999999999999999999999999988743      333321   111122111              1


Q ss_pred             hcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         149 LGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       149 ~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      +.+.+++.-..  ......-.+..+-+||++++.+|++||+|||+   |..+...+++.|+++.+..+.+++++|||..+
T Consensus       385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~  464 (538)
T 1yqt_A          385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM  464 (538)
T ss_dssp             TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            12222222100  01112334556667999999999999999998   99999999999999987668899999999877


Q ss_pred             hhc
Q psy2881         224 IID  226 (302)
Q Consensus       224 vl~  226 (302)
                      +..
T Consensus       465 ~~~  467 (538)
T 1yqt_A          465 IDY  467 (538)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.73  E-value=1.3e-18  Score=185.57  Aligned_cols=136  Identities=14%  Similarity=0.200  Sum_probs=99.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.......   ++.+..|..          
T Consensus      1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A         1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred             ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence            4789999999999999999999999999999999999999999999999975433211   111111110          


Q ss_pred             ----------------------C-----------CCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         154 ----------------------D-----------VPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       154 ----------------------~-----------~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                            +           .....  ......-.++.+-+||||++++|++|||||||   |+.+
T Consensus      1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A         1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp             HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred             HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence                                  0           00000  00112223334445999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ...+.+.|++..  .++|+++++|.+..+
T Consensus      1253 E~~Iq~~l~~~~--~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A         1253 EKVVQEALDRAR--EGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp             HHHHHHHHTTTS--SSSEEEEECSSSSTT
T ss_pred             HHHHHHHHHHHc--CCCEEEEeccCHHHH
Confidence            998888887764  378999999955433

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.73  E-value=6.8e-19  Score=173.88  Aligned_cols=137  Identities=16%  Similarity=0.128  Sum_probs=93.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE---------EEecccCCChh-----------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV---------LLAACDTFRAA-----------------  141 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V---------~l~~~d~~~~~-----------------  141 (302)
                      +++++| ++++|++++|+||||||||||+++|+|+++|++|++         .+.|.+.....                 
T Consensus       107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~  185 (607)
T 3bk7_A          107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV  185 (607)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCG
T ss_pred             eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechh
Confidence            678888 899999999999999999999999999999999984         12232211000                 


Q ss_pred             ----------HHHHHH---------HhcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         142 ----------AYEQLL---------ILGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       142 ----------~~~ql~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                ..+.+.         .+.+.+++.-...  .....-.+..+-+||+|++.+|++||+|||+   |+....
T Consensus       186 ~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~  265 (607)
T 3bk7_A          186 DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL  265 (607)
T ss_dssp             GGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred             hhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence                      000000         0000001100000  0011223333445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|+++.+. +.++++++||+.++..
T Consensus       266 ~l~~~L~~l~~~-g~tvIivsHdl~~~~~  293 (607)
T 3bk7_A          266 KVARVIRRLANE-GKAVLVVEHDLAVLDY  293 (607)
T ss_dssp             HHHHHHHHHHHT-TCEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHhc-CCEEEEEecChHHHHh
Confidence            999999999764 8899999999876544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.73  E-value=3.7e-18  Score=170.98  Aligned_cols=137  Identities=11%  Similarity=0.130  Sum_probs=85.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHH---------------------HHHHhHhhhC-------CCeEEEecccCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTI---------------------GKLANYFKKR-------KKSVLLAACDTF  138 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll---------------------~~Lag~~~~~-------~g~V~l~~~d~~  138 (302)
                      .+++++||++++|++++|+||||||||||+                     +.++++..|+       .+.|.+.+.+..
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~  111 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS  111 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence            479999999999999999999999999998                     8888888887       455666554432


Q ss_pred             C-----hhHHHH----HHHhcc-------------------cCCCCee--------------------------------
Q psy2881         139 R-----AAAYEQ----LLILGK-------------------YNDVPVI--------------------------------  158 (302)
Q Consensus       139 ~-----~~~~~q----l~~~~~-------------------~~~~~~~--------------------------------  158 (302)
                      .     .+.+.|    +..+..                   ..++.+.                                
T Consensus       112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL  191 (670)
T 3ux8_A          112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL  191 (670)
T ss_dssp             ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred             ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence            1     111000    000000                   0000000                                


Q ss_pred             ------ecCCCCCHHHHHHHHHHHHHhCCCC--eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         159 ------SEKKITDPAAIAFNAINIAQKKNTD--IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       159 ------~~~~~~~~~~~~~~~la~al~~~~~--llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                            .......-.+..+-+||||++.+|+  +||+|||+   |+.....+++.|+++.+. +.++++++||+.++
T Consensus       192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~  267 (670)
T 3ux8_A          192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTM  267 (670)
T ss_dssp             TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred             chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence                  0000011223344459999999998  99999998   999999999999999754 88999999997653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.73  E-value=1.9e-18  Score=183.71  Aligned_cols=138  Identities=18%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.......   ++.++.|...         
T Consensus      1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp             CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence            4789999999999999999999999999999999999999999999998875432210   0111111100         


Q ss_pred             ------------------------------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccc
Q psy2881         155 ------------------------------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLST  195 (302)
Q Consensus       155 ------------------------------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~  195 (302)
                                                    .|      +-.......-.+..+-+||||++++|+++|+||||   |+.+
T Consensus      1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A         1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp             HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred             HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                                          00      00000111223344445999999999999999998   9999


Q ss_pred             hHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         196 QSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       196 ~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ...+.+.|++..  .++|+++++||+..+..
T Consensus      1207 ~~~i~~~l~~~~--~~~tvi~isH~l~~i~~ 1235 (1284)
T 3g5u_A         1207 EKVVQEALDKAR--EGRTCIVIAHRLSTIQN 1235 (1284)
T ss_dssp             HHHHHHHHHHHS--SSSCEEEECSCTTGGGS
T ss_pred             HHHHHHHHHHhC--CCCEEEEEecCHHHHHc
Confidence            888988887753  37899999999887654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.73  E-value=2e-18  Score=183.53  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=100.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~---------  154 (302)
                      ++++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......   .++.+..|...         
T Consensus       404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN  483 (1284)
T 3g5u_A          404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN  483 (1284)
T ss_dssp             CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred             cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence            478999999999999999999999999999999999999999999999875322111   01111111100         


Q ss_pred             ----------------------------CC------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         155 ----------------------------VP------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       155 ----------------------------~~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                  .|      +-.......-.++.+-+||||++++|+++|+|||+   |+.+..
T Consensus       484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~  563 (1284)
T 3g5u_A          484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA  563 (1284)
T ss_dssp             HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred             HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence                                        00      00001112334445556999999999999999998   988888


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.+..+.  .++|+++++|++..+..
T Consensus       564 ~i~~~l~~~~--~~~t~i~itH~l~~i~~  590 (1284)
T 3g5u_A          564 VVQAALDKAR--EGRTTIVIAHRLSTVRN  590 (1284)
T ss_dssp             HHHHHHHHHH--TTSEEEEECSCHHHHTT
T ss_pred             HHHHHHHHHc--CCCEEEEEecCHHHHHc
Confidence            8888887764  37899999998776544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.73  E-value=5.9e-18  Score=180.43  Aligned_cols=138  Identities=16%  Similarity=0.204  Sum_probs=101.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYN----------  153 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~----------  153 (302)
                      ++++|+||++++|+.++||||+||||||+++.|.|++.|++|+|.++|.|+......   .++.+..|..          
T Consensus       432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN  511 (1321)
T 4f4c_A          432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEEN  511 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred             ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHH
Confidence            568899999999999999999999999999999999999999999999876432211   1111111110          


Q ss_pred             ---------------------------------CCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         154 ---------------------------------DVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       154 ---------------------------------~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                       ...+-.......-.++.+-+||||+.++|+++|||||+   |.++..
T Consensus       512 I~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~  591 (1321)
T 4f4c_A          512 ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG  591 (1321)
T ss_dssp             HHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH
T ss_pred             HhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHH
Confidence                                             00000111122334455556999999999999999998   999988


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+.+.|.++.+  ++|+++++|....+..
T Consensus       592 ~i~~~l~~~~~--~~T~iiiaHrls~i~~  618 (1321)
T 4f4c_A          592 IVQQALDKAAK--GRTTIIIAHRLSTIRN  618 (1321)
T ss_dssp             HHHHHHHHHHT--TSEEEEECSCTTTTTT
T ss_pred             HHHHHHHHHhC--CCEEEEEcccHHHHHh
Confidence            89999988753  7899999996654433

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.1e-18  Score=172.16  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=87.0

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-----------EecccCCChhH---------------------
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-----------LAACDTFRAAA---------------------  142 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-----------l~~~d~~~~~~---------------------  142 (302)
                      .+.+|++++|+||||||||||+++|+|+++|++|+|.           +.|.+.+....                     
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            4678999999999999999999999999999999872           11111100000                     


Q ss_pred             ---------H-----------HHHHHhcccCCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         143 ---------Y-----------EQLLILGKYNDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       143 ---------~-----------~ql~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                               .           +....+.+.+++.....  .......+..+-+||+|++.+|+++|+|||+   |+....
T Consensus       179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~  258 (608)
T 3j16_B          179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL  258 (608)
T ss_dssp             HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred             hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence                     0           00000000111110000  0111222333344999999999999999998   898889


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .+++.|+++.+. +.++++++||+..+..
T Consensus       259 ~l~~~l~~l~~~-g~tvi~vtHdl~~~~~  286 (608)
T 3j16_B          259 NAAQIIRSLLAP-TKYVICVEHDLSVLDY  286 (608)
T ss_dssp             HHHHHHHGGGTT-TCEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHhC-CCEEEEEeCCHHHHHH
Confidence            999999998754 7899999999876654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.71  E-value=2.2e-18  Score=168.12  Aligned_cols=129  Identities=14%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-----------EEecccCCChhH----------------------
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-----------LLAACDTFRAAA----------------------  142 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-----------~l~~~d~~~~~~----------------------  142 (302)
                      .++|++++|+||||||||||+++|+|+++|+.|+|           .+.+.+......                      
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            36899999999999999999999999999999988           333333210000                      


Q ss_pred             -----HHHH---------HHhcccCCCCeee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         143 -----YEQL---------LILGKYNDVPVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       143 -----~~ql---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                           .+.+         ..+.+.+++....  ......-.+..+-+||+|++.+|+++|+|||+   |+.....+++.|
T Consensus       102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l  181 (538)
T 3ozx_A          102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI  181 (538)
T ss_dssp             CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence                 0000         0000001110000  00011222333445999999999999999998   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.+  +.++++++||+..+..
T Consensus       182 ~~l~~--g~tii~vsHdl~~~~~  202 (538)
T 3ozx_A          182 RELLK--NKYVIVVDHDLIVLDY  202 (538)
T ss_dssp             HHHCT--TSEEEEECSCHHHHHH
T ss_pred             HHHhC--CCEEEEEEeChHHHHh
Confidence            99864  7899999999876654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.70  E-value=4e-18  Score=174.74  Aligned_cols=48  Identities=23%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+
T Consensus       687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            367889999999999999999999999999999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.66  E-value=4.5e-17  Score=145.06  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITD  165 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~  165 (302)
                      ++++++  +.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++...         .+. ...++.+ ..+.+
T Consensus        16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~---------~~~-~~~~v~q~~~gl~   83 (261)
T 2eyu_A           16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------FKH-KKSIVNQREVGED   83 (261)
T ss_dssp             HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---------CCC-SSSEEEEEEBTTT
T ss_pred             HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee---------cCC-cceeeeHHHhCCC
Confidence            455666  7899999999999999999999999999997 99999998765311         000 0111111 00000


Q ss_pred             HHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         166 PAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       166 ~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      . .....+|++++..+|+++++|||+|+.+..   ..++. . ..|.++++++|+..
T Consensus        84 ~-~~l~~~la~aL~~~p~illlDEp~D~~~~~---~~l~~-~-~~g~~vl~t~H~~~  134 (261)
T 2eyu_A           84 T-KSFADALRAALREDPDVIFVGEMRDLETVE---TALRA-A-ETGHLVFGTLHTNT  134 (261)
T ss_dssp             B-SCHHHHHHHHHHHCCSEEEESCCCSHHHHH---HHHHH-H-HTTCEEEEEECCSS
T ss_pred             H-HHHHHHHHHHHhhCCCEEEeCCCCCHHHHH---HHHHH-H-ccCCEEEEEeCcch
Confidence            0 012456899999999999999999765533   33333 2 24778889999865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=2.1e-18  Score=148.71  Aligned_cols=123  Identities=18%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccC--CC-Ce----eec--C-CCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYN--DV-PV----ISE--K-KIT  164 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~--~~-~~----~~~--~-~~~  164 (302)
                      ++|++++|+||||||||||+++|+|+ +|++|+|....  .+....  ...+.++.+..  ++ .+    ...  . ...
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~--~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~   96 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEA--GEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP   96 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCT--TCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhh--hcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence            67999999999999999999999999 99999985421  110000  00011111100  01 00    000  0 001


Q ss_pred             CHHHHHHH---------HHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         165 DPAAIAFN---------AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       165 ~~~~~~~~---------~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .......+         +||+|++.+|++||+|||+.. +...+++.|+++ + .+.+++ +|||...+-.
T Consensus        97 ~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A           97 EVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             THHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence            11111111         378999999999999999855 788888888887 3 477888 9999886554

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.63  E-value=4.1e-16  Score=156.13  Aligned_cols=56  Identities=9%  Similarity=0.205  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCCCC---eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         168 AIAFNAINIAQKKNTD---IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       168 ~~~~~~la~al~~~~~---llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +..+-+||||++.+|+   +||+|||+   |+.+...+++.|+++.+. +.|+++++||+.++
T Consensus       548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~  609 (670)
T 3ux8_A          548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVI  609 (670)
T ss_dssp             HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence            4444569999998874   99999998   999999999999999764 88999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.62  E-value=3e-16  Score=160.92  Aligned_cols=136  Identities=15%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH-hh----hCCCeEEEecccC----CChhHHHHH-----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY-FK----KRKKSVLLAACDT----FRAAAYEQL-----------  146 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~-~~----~~~g~V~l~~~d~----~~~~~~~ql-----------  146 (302)
                      .+++++||++.+|++++|+||||||||||+++|+|- +.    +...++.+..++.    ......+.+           
T Consensus       449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v  528 (986)
T 2iw3_A          449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAI  528 (986)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHH
T ss_pred             EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHH
Confidence            467889999999999999999999999999999952 21    1112344443332    111222222           


Q ss_pred             HHhcccCCCC--eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         147 LILGKYNDVP--VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       147 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                      ..+.+.++++  ... ........+..+-+||+|++.+|++||+|||+   |+.+...+++.|++    .+.+++++|||
T Consensus       529 ~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd  604 (986)
T 2iw3_A          529 KDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD  604 (986)
T ss_dssp             HHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC
T ss_pred             HHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECC
Confidence            2222233432  100 11123345556667999999999999999998   99988888888876    47899999999


Q ss_pred             eehhhc
Q psy2881         221 IFLIID  226 (302)
Q Consensus       221 ~~lvl~  226 (302)
                      ..++..
T Consensus       605 l~~l~~  610 (986)
T 2iw3_A          605 SVFLDN  610 (986)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.62  E-value=1.6e-15  Score=136.84  Aligned_cols=134  Identities=16%  Similarity=0.083  Sum_probs=89.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhccc--------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKY--------------  152 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~--------------  152 (302)
                      .++++++.+++|++++|+||||||||||++.|++.+.+..| +|.+.+.+.........+..+...              
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~  103 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII  103 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence            46677889999999999999999999999999999999866 898876654211111111100000              


Q ss_pred             -------------CCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCCC---c-------cchHHHHHHHHHHH
Q psy2881         153 -------------NDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSGR---L-------STQSHLMRELKKIK  207 (302)
Q Consensus       153 -------------~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~d---~-------~~~~~l~~~L~~l~  207 (302)
                                   ...++....  ...........+.++++..+|++||+|||+.   .       .....+++.|++++
T Consensus       104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la  183 (296)
T 1cr0_A          104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFA  183 (296)
T ss_dssp             HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence                         011221111  1233443333334566889999999999973   2       22346888888888


Q ss_pred             HHhchhhcccccee
Q psy2881         208 KVIEKKIFELPYEI  221 (302)
Q Consensus       208 ~~~~~~i~~~~hd~  221 (302)
                      +..+.++++++|+.
T Consensus       184 ~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          184 KSTGVVLVVICHLK  197 (296)
T ss_dssp             HHHCCEEEEEEECC
T ss_pred             HHhCCeEEEEEecC
Confidence            88899999999985

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.61  E-value=8.8e-17  Score=147.88  Aligned_cols=117  Identities=10%  Similarity=0.036  Sum_probs=85.7

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA  167 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~  167 (302)
                      +++++++.+.+|++++|+||||||||||++.|+|+++|++|.|.+.+.+......      +.  ..+.++.. .+    
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~------~~--~~i~~~~g-gg----  226 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH------HK--NYTQLFFG-GN----  226 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS------CS--SEEEEECB-TT----
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc------ch--hEEEEEeC-CC----
Confidence            4677899999999999999999999999999999999999999999875332110      11  11222211 11    


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         168 AIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       168 ~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ...+.+|++|+..+|+++++|||++.    ++++.|+.+.. .+.++++++|+..
T Consensus       227 ~~~r~~la~aL~~~p~ilildE~~~~----e~~~~l~~~~~-g~~tvi~t~H~~~  276 (330)
T 2pt7_A          227 ITSADCLKSCLRMRPDRIILGELRSS----EAYDFYNVLCS-GHKGTLTTLHAGS  276 (330)
T ss_dssp             BCHHHHHHHHTTSCCSEEEECCCCST----HHHHHHHHHHT-TCCCEEEEEECSS
T ss_pred             hhHHHHHHHHhhhCCCEEEEcCCChH----HHHHHHHHHhc-CCCEEEEEEcccH
Confidence            23346699999999999999999872    35566666642 2446788999765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.57  E-value=6.5e-15  Score=127.06  Aligned_cols=133  Identities=15%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             CCCcce-ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC------CCCeeecC
Q psy2881          89 EKPLIF-KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN------DVPVISEK  161 (302)
Q Consensus        89 l~~i~l-~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~------~~~~~~~~  161 (302)
                      ++++.. .+++|++++|+|||||||||+++.|++...+.+|+|.+.+.+.........+..++...      .+.+....
T Consensus        12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (235)
T 2w0m_A           12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDAL   91 (235)
T ss_dssp             HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECC
T ss_pred             HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEecc
Confidence            344444 57899999999999999999999999999888999999887764222222222111100      00111100


Q ss_pred             ----------CCCCHHHHHHHHHHHHHhCCCC--eEEEcCCC-----CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         162 ----------KITDPAAIAFNAINIAQKKNTD--IVIVDTSG-----RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       162 ----------~~~~~~~~~~~~la~al~~~~~--llllDEP~-----d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                                ...+.........+.+...+|+  +|++|||+     |+.....+++.|+++++..+.++++++|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           92 MKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             C----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             ccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence                      0113333333333334456899  99999997     666678899999999887788999999986

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.55  E-value=1.3e-14  Score=125.35  Aligned_cols=126  Identities=15%  Similarity=0.180  Sum_probs=76.5

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-------CCCeEEEecccCCChhHHHHHHHhcccCCCC---------ee
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-------RKKSVLLAACDTFRAAAYEQLLILGKYNDVP---------VI  158 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-------~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~---------~~  158 (302)
                      .+++|++++|+||||||||||++.|+|.+.+       .++.+.+.+.+..+..   ++..+.+..++.         +.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~   97 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE---RIREIAQNRGLDPDEVLKHIYVA   97 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH---HHHHHHHHTTSCHHHHHHTEEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH---HHHHHHHHcCCCHHHHhhcEEEE
Confidence            4679999999999999999999999997665       3346666666543322   223333333221         11


Q ss_pred             ecCCCCCHHHHHHHH---HHHHH--hCCCCeEEEcCCC---Ccc-------c-----hHHHHHHHHHHHHHhchhhcccc
Q psy2881         159 SEKKITDPAAIAFNA---INIAQ--KKNTDIVIVDTSG---RLS-------T-----QSHLMRELKKIKKVIEKKIFELP  218 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~---la~al--~~~~~llllDEP~---d~~-------~-----~~~l~~~L~~l~~~~~~~i~~~~  218 (302)
                      ...............   +.+++  ..+|+++++|||+   |+.       .     ...++..|.++++..+.++++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vt  177 (231)
T 4a74_A           98 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN  177 (231)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            111110111111111   22222  4689999999998   321       1     12678888888877799999999


Q ss_pred             ceeeh
Q psy2881         219 YEIFL  223 (302)
Q Consensus       219 hd~~l  223 (302)
                      |....
T Consensus       178 H~~~~  182 (231)
T 4a74_A          178 QVQAN  182 (231)
T ss_dssp             ECC--
T ss_pred             ecccC
Confidence            96544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.54  E-value=9.3e-15  Score=135.55  Aligned_cols=114  Identities=16%  Similarity=0.200  Sum_probs=75.0

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeec-CCCCCHHHHHHH
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE-KKITDPAAIAFN  172 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~-~~~~~~~~~~~~  172 (302)
                      ...+|++++|+||||||||||++.|+|++.|+ +|.|.....+. ...       +  .....++.+ ....+ .....+
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~-------~--~~~~~~v~q~~~~~~-~~~~~~  187 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV-------H--ESKKCLVNQREVHRD-TLGFSE  187 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC-------C--CCSSSEEEEEEBTTT-BSCHHH
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh-------h--hccccceeeeeeccc-cCCHHH
Confidence            45678899999999999999999999999987 67666554332 111       0  000111111 00001 012234


Q ss_pred             HHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         173 AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +|++|+.++|++|++|||+|...    ++.+.+.+. .|.+++.++|+...+
T Consensus       188 ~La~aL~~~PdvillDEp~d~e~----~~~~~~~~~-~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMRDLET----IRLALTAAE-TGHLVFGTLHTTSAA  234 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCCSHHH----HHHHHHHHH-TTCEEEEEESCSSHH
T ss_pred             HHHHHhhhCcCEEecCCCCCHHH----HHHHHHHHh-cCCEEEEEEccChHH
Confidence            79999999999999999997433    444444443 477899999987654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.54  E-value=3.7e-15  Score=140.61  Aligned_cols=57  Identities=5%  Similarity=0.088  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         165 DPAAIAFNAINIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       165 ~~~~~~~~~la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .-.+..+-+||++++.+|  ++||+|||+   |+.....+.+.|+++.  .+.+++++||+..+
T Consensus       297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~  358 (415)
T 4aby_A          297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQI  358 (415)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHH
T ss_pred             CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHH
Confidence            445555667999999999  999999997   9999999999999986  27889999998754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.52  E-value=1.1e-15  Score=144.26  Aligned_cols=123  Identities=9%  Similarity=-0.022  Sum_probs=77.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---------------------HHHHHhcccCCC--
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---------------------EQLLILGKYNDV--  155 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---------------------~ql~~~~~~~~~--  155 (302)
                      +.+++|+||||||||||+++|+|+++|++|+|.+.+.++.+.+..                     ..+..+.+..++  
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            449999999999999999999999999999988776543211000                     000111111111  


Q ss_pred             -CeeecCCCCCHHHHHHHHHHHHHhC----------CCCeEEEcCCC---CccchHHHHHHHHHHHH----Hh----chh
Q psy2881         156 -PVISEKKITDPAAIAFNAINIAQKK----------NTDIVIVDTSG---RLSTQSHLMRELKKIKK----VI----EKK  213 (302)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~la~al~~----------~~~llllDEP~---d~~~~~~l~~~L~~l~~----~~----~~~  213 (302)
                       ......+... .+..+..+++++..          +|+++++|||+   |+..+..+++.++++..    ..    ..+
T Consensus       149 ~~~~~~lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~i  227 (413)
T 1tq4_A          149 YDFFIIISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPI  227 (413)
T ss_dssp             CSEEEEEESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCE
T ss_pred             cCCeEEeCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence             0000011110 01223458888988          99999999997   99999999999999863    22    245


Q ss_pred             hccccceee
Q psy2881         214 IFELPYEIF  222 (302)
Q Consensus       214 i~~~~hd~~  222 (302)
                      +++++|+..
T Consensus       228 iliSsh~l~  236 (413)
T 1tq4_A          228 FLLSNKNVC  236 (413)
T ss_dssp             EECCTTCTT
T ss_pred             EEEecCcCC
Confidence            677888543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.1e-15  Score=146.37  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-e-EEEecccCCChhHHHHHH--------------HhcccC-
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-S-VLLAACDTFRAAAYEQLL--------------ILGKYN-  153 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~-V~l~~~d~~~~~~~~ql~--------------~~~~~~-  153 (302)
                      +++|++.+|++++|+||||||||||+++|+|++.|++| + |.+++......+...|-.              .+.... 
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~  209 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLT  209 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccc
Confidence            68999999999999999999999999999999999999 8 988762111111110100              010000 


Q ss_pred             -C-------CCeeecCCCCC--------HHHHHHHHHHHH--HhCCCCe----EEEcC-CC---CccchHHHHHHHHHHH
Q psy2881         154 -D-------VPVISEKKITD--------PAAIAFNAINIA--QKKNTDI----VIVDT-SG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       154 -~-------~~~~~~~~~~~--------~~~~~~~~la~a--l~~~~~l----lllDE-P~---d~~~~~~l~~~L~~l~  207 (302)
                       +       .+......-.+        ..+..+-++|++  ++.+|++    +|+|| |+   |+. .    +.|.++.
T Consensus       210 ~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~----~~l~~l~  284 (460)
T 2npi_A          210 SGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-L----AELHHII  284 (460)
T ss_dssp             SSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-C----HHHHHHH
T ss_pred             cCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-H----HHHHHHH
Confidence             0       00000000000        112334458889  9999999    99999 76   665 3    3444544


Q ss_pred             HHhchhhccccceee
Q psy2881         208 KVIEKKIFELPYEIF  222 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~  222 (302)
                      +..+.++++++|+..
T Consensus       285 ~~~~~tviiVth~~~  299 (460)
T 2npi_A          285 EKLNVNIMLVLCSET  299 (460)
T ss_dssp             HHTTCCEEEEECCSS
T ss_pred             HHhCCCEEEEEccCc
Confidence            445778888999755

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.50  E-value=6.1e-16  Score=131.22  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee-------------------
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS-------------------  159 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~-------------------  159 (302)
                      |++++|+||||||||||+++|+|+++ ++| |.+.|.+....      ..+.+..+..+..                   
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~------~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~   72 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV------RQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGK   72 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE------ETTSSEEEEEEEETTSCEEEEEECCCCCCSSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh------HhhhceEEEEEEecccceehhhcccccCCccc
Confidence            67899999999999999999999999 888 88877655211      1112221111110                   


Q ss_pred             -----cCCCCCHHH---HHHHHHHH---HHhCCCCeEEEcCCCCcc-chHHHHHHHHHHHHHhchhh---cccccee
Q psy2881         160 -----EKKITDPAA---IAFNAINI---AQKKNTDIVIVDTSGRLS-TQSHLMRELKKIKKVIEKKI---FELPYEI  221 (302)
Q Consensus       160 -----~~~~~~~~~---~~~~~la~---al~~~~~llllDEP~d~~-~~~~l~~~L~~l~~~~~~~i---~~~~hd~  221 (302)
                           ..+..++..   ....++++   |+..+|+++|+||||... .....++.|.++.+....++   +.++|+.
T Consensus        73 ~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~  149 (189)
T 2i3b_A           73 RECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGK  149 (189)
T ss_dssp             CCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSS
T ss_pred             cccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCC
Confidence                 001112322   11122333   457899999999975221 22346777777776433333   2445864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.50  E-value=8e-15  Score=148.88  Aligned_cols=51  Identities=10%  Similarity=0.266  Sum_probs=44.9

Q ss_pred             HHHHHHhCC---CCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         173 AINIAQKKN---TDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       173 ~la~al~~~---~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .||++++.+   |+++|||||+   |+.....+++.|.++.+. |.++++++||+.++
T Consensus       740 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i  796 (842)
T 2vf7_A          740 KLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVV  796 (842)
T ss_dssp             HHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred             HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH
Confidence            389999986   7999999998   888999999999999754 88999999997765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.46  E-value=4e-14  Score=137.90  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=89.8

Q ss_pred             ccCCCcce-ecCCCeEEEEEcCCCCCHHHHHHH--HHhHhhhCCCeEEEecccCCChhHHHHHHHh---ccc----CCCC
Q psy2881          87 SLEKPLIF-KKCKPFVIMIVGVNGVGKTTTIGK--LANYFKKRKKSVLLAACDTFRAAAYEQLLIL---GKY----NDVP  156 (302)
Q Consensus        87 ~~l~~i~l-~~~~g~ii~lvGpnGsGKTTll~~--Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~---~~~----~~~~  156 (302)
                      ++++++++ .+++|++++|+||||||||||++.  ++|+++|.+|.|.+.+.+.. ....+..+.+   .+.    ..+.
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~~~g~~~q~~~~~~~l~  104 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNARSFGWDLAKLVDEGKLF  104 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHGGGTCCHHHHHHTTSEE
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHHHcCCChHHhhccCcEE
Confidence            46788999 999999999999999999999999  78999999999999988731 1111100000   000    0011


Q ss_pred             eeecCC---C----CC--HHHHHHHHHHHHHh-CCCCeEEEcCCC--------CccchHHHHHHHHHHHHHhchhhcccc
Q psy2881         157 VISEKK---I----TD--PAAIAFNAINIAQK-KNTDIVIVDTSG--------RLSTQSHLMRELKKIKKVIEKKIFELP  218 (302)
Q Consensus       157 ~~~~~~---~----~~--~~~~~~~~la~al~-~~~~llllDEP~--------d~~~~~~l~~~L~~l~~~~~~~i~~~~  218 (302)
                      ......   .    ..  ... ....+..++. .+|++|++|||+        |+.....+++.++.+++ .+.++++++
T Consensus       105 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~it  182 (525)
T 1tf7_A          105 ILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTT  182 (525)
T ss_dssp             EEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             EEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence            111000   0    01  111 1222344443 689999999996        33556778888888876 589999999


Q ss_pred             ceeehh
Q psy2881         219 YEIFLI  224 (302)
Q Consensus       219 hd~~lv  224 (302)
                      |+...+
T Consensus       183 H~~~~~  188 (525)
T 1tf7_A          183 ERIEEY  188 (525)
T ss_dssp             ECSSSS
T ss_pred             cCCCCc
Confidence            998765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.44  E-value=9.7e-13  Score=121.75  Aligned_cols=177  Identities=12%  Similarity=0.109  Sum_probs=104.1

Q ss_pred             HHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc---cCCCc-ceecCCCeEEEEEcCCCCCHHHH
Q psy2881          40 DLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKS---LEKPL-IFKKCKPFVIMIVGVNGVGKTTT  115 (302)
Q Consensus        40 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~l~~i-~l~~~~g~ii~lvGpnGsGKTTl  115 (302)
                      .....|++..-+.++++...+.+......+...+.+....  ...+..   .++.+ .+.+++|++++|+||||||||||
T Consensus        70 L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL  147 (349)
T 1pzn_A           70 LKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT--IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQL  147 (349)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHT--CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred             HHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhcc--CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence            3345778878888888877766532122333333221100  011111   12232 46788999999999999999999


Q ss_pred             HHHHHhHh--hhCC----Ce-EEEecccCCChhHHHHHHHhcccCCCCe--------eecCCCCCHHHHHHHHHHHHHh-
Q psy2881         116 IGKLANYF--KKRK----KS-VLLAACDTFRAAAYEQLLILGKYNDVPV--------ISEKKITDPAAIAFNAINIAQK-  179 (302)
Q Consensus       116 l~~Lag~~--~~~~----g~-V~l~~~d~~~~~~~~ql~~~~~~~~~~~--------~~~~~~~~~~~~~~~~la~al~-  179 (302)
                      +..+++..  +|+.    |+ |++.+.+.++   .+++..+++..++..        +......+...... .++++++ 
T Consensus       148 ~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~---~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l-~~~~~~~~  223 (349)
T 1pzn_A          148 AHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLV-QQAEDKIK  223 (349)
T ss_dssp             HHHHHHHTTSCGGGTSCSCEEEEEESSSCCC---HHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHhccchhcCCCCCeEEEEeCCCCCC---HHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHH-HHHHHHHH
Confidence            99999998  4544    68 7777766543   234444554443321        11111101111111 1334454 


Q ss_pred             ------CCCCeEEEcCCC---Cccc------------hHHHHHHHHHHHHHhchhhccccceee
Q psy2881         180 ------KNTDIVIVDTSG---RLST------------QSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       180 ------~~~~llllDEP~---d~~~------------~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                            .+|++||+|||+   |+..            ...++..|.++++..+.++++++|...
T Consensus       224 ~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          224 ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             HhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence                  689999999998   4321            245666677777777889999999643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.44  E-value=2.2e-13  Score=139.42  Aligned_cols=53  Identities=11%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             HHHHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         171 FNAINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       171 ~~~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +-+||++++++|   +++|+||||   |+.....+++.|.++.+. |.|+++++||+..+
T Consensus       813 RV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~i  871 (916)
T 3pih_A          813 RIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLDVI  871 (916)
T ss_dssp             HHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence            334999998765   799999998   999999999999999754 88999999997654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.43  E-value=1.8e-13  Score=139.71  Aligned_cols=51  Identities=10%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             HHHHHHhCCC---CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         173 AINIAQKKNT---DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       173 ~la~al~~~~---~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .||++++.+|   +++|+|||+   |+.....+++.|.++.+ .|.++++++||+.++
T Consensus       855 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i  911 (972)
T 2r6f_A          855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVI  911 (972)
T ss_dssp             HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH
Confidence            3999999764   999999998   99999999999999975 488999999997653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.40  E-value=3e-14  Score=119.60  Aligned_cols=110  Identities=14%  Similarity=0.019  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HHHHHHHhccc----------CCCCe--eecCCCCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AYEQLLILGKY----------NDVPV--ISEKKITD  165 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~~ql~~~~~~----------~~~~~--~~~~~~~~  165 (302)
                      .++|+||||||||||+++|+|++.     |.+.|.+.....   ....+.+..+.          .+...  ........
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVN   76 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccC
Confidence            589999999999999999999985     333332221000   00000000000          00000  00000011


Q ss_pred             --HHHHHHHHHHHH-----HhCCCCeEEEcC--CC---CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         166 --PAAIAFNAINIA-----QKKNTDIVIVDT--SG---RLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       166 --~~~~~~~~la~a-----l~~~~~llllDE--P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                        ..+..+-.+++|     ++.+|+++|+||  |+   |+.....+.+.+.+    .+.++++++|
T Consensus        77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H  138 (178)
T 1ye8_A           77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIP  138 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECC
T ss_pred             cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEc
Confidence              233444568886     899999999999  86   65555555555443    3555777776

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.40  E-value=1.1e-13  Score=141.94  Aligned_cols=132  Identities=12%  Similarity=0.004  Sum_probs=76.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITD  165 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~  165 (302)
                      .++++++|++++|++++|+|||||||||+++.+++... ...|...  .......+..+   .+....+..-........
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v--pa~~~~i~~~d---~i~~~ig~~d~l~~~~st  735 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV--PAEEATIGIVD---GIFTRMGAADNIYKGRST  735 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB--SSSEEEEECCS---EEEEEC----------CC
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc--cchhhhhhHHH---HHHHhCChHHHHHHhHHH
Confidence            46788999999999999999999999999999987643 1112100  00000000000   000011110000000001


Q ss_pred             H--HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH-HHHHHHHHHhchhhccccceeehh
Q psy2881         166 P--AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM-RELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       166 ~--~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~-~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .  .......++++ +.+|++||+|||+   |+.....+. ..+..+.+..+.+++++||+..++
T Consensus       736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~  799 (918)
T 3thx_B          736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC  799 (918)
T ss_dssp             HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence            1  11111223333 7899999999997   777777776 566666655688999999997664

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.40  E-value=1.3e-14  Score=124.33  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +++++  .++++|++++|+||||||||||+++|+|+++
T Consensus        10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34555  5788999999999999999999999999985

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.40  E-value=1.9e-13  Score=140.36  Aligned_cols=123  Identities=17%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh--------HhhhCCCe-EEEecccCCChhHHHHHHHhcccCCCCee
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--------YFKKRKKS-VLLAACDTFRAAAYEQLLILGKYNDVPVI  158 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--------~~~~~~g~-V~l~~~d~~~~~~~~ql~~~~~~~~~~~~  158 (302)
                      ++++++|++.+|++++|+|||||||||+++.++.        .+.|..+. +.+.+.             +..+.+..-.
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~-------------i~~~ig~~d~  717 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDC-------------ILARVGAGDS  717 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSE-------------EEEECC----
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHH-------------HHHhcCchhh
Confidence            4457889999999999999999999999999943        33332211 111100             0011111100


Q ss_pred             ecCCCCCHHHHHHHHHHHHH--hCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeehh
Q psy2881         159 SEKKITDPAAIAFNAINIAQ--KKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       159 ~~~~~~~~~~~~~~~la~al--~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      . ..+......-...+++++  +.+|++||+||||   |+.....+ ...+..+.+..+.+++++||+..+.
T Consensus       718 l-~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~  788 (934)
T 3thx_A          718 Q-LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT  788 (934)
T ss_dssp             ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred             H-HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence            0 000111111122245555  7999999999997   77666666 5556666654588999999997654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.39  E-value=3.2e-13  Score=125.99  Aligned_cols=111  Identities=17%  Similarity=0.248  Sum_probs=73.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-CCCCHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-KITDPAAIAFNA  173 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-~~~~~~~~~~~~  173 (302)
                      +.+|++++|+||||||||||++.|++++.|+ +|+|.+.+.+.. .       .+  ...+.++.+. .+.++ .....+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~-------~~--~~~~~~v~Q~~~g~~~-~~~~~~  201 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y-------VF--KHKKSIVNQREVGEDT-KSFADA  201 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-------CC--CCSSSEEEEEEBTTTB-SCSHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-------hh--ccCceEEEeeecCCCH-HHHHHH
Confidence            6789999999999999999999999999987 899988775432 1       01  1122222220 00000 011346


Q ss_pred             HHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       174 la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +++++..+|++|++|||+|...   +...++..  ..|.+++.++|+..
T Consensus       202 l~~~L~~~pd~illdE~~d~e~---~~~~l~~~--~~g~~vi~t~H~~~  245 (372)
T 2ewv_A          202 LRAALREDPDVIFVGEMRDLET---VETALRAA--ETGHLVFGTLHTNT  245 (372)
T ss_dssp             HHHHTTSCCSEEEESCCCSHHH---HHHHHHHH--TTTCEEEECCCCCS
T ss_pred             HHHHhhhCcCEEEECCCCCHHH---HHHHHHHH--hcCCEEEEEECcch
Confidence            8888999999999999996543   33334332  24667777888643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.35  E-value=2.9e-14  Score=123.34  Aligned_cols=45  Identities=27%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .++++||++++|++++|+||||||||||+++|+|++ |  |+|.+ +.+
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~   56 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVS   56 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCC
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eec
Confidence            478999999999999999999999999999999998 5  88988 544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.35  E-value=5.9e-12  Score=107.73  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCC--------eeecCCCCC
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVP--------VISEKKITD  165 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~  165 (302)
                      .+++|++++|+|||||||||++..+++   +.++.|.+.+.+. ...   +++..+.+..+..        .+.......
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSP---ERLVQMAETRGLNPEEALSRFILFTPSDFK   89 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCH---HHHHHHHHTTTCCHHHHHHHEEEECCTTTS
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCH---HHHHHHHHhcCCChHHHhhcEEEEecCCHH
Confidence            467999999999999999999999999   4466777766553 222   1222222222221        111111122


Q ss_pred             HHHHHHHHHHHHHhCC-CCeEEEcCCC---Cccch--------HHHHHHHHHHHHHhchhhccccceee
Q psy2881         166 PAAIAFNAINIAQKKN-TDIVIVDTSG---RLSTQ--------SHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       166 ~~~~~~~~la~al~~~-~~llllDEP~---d~~~~--------~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ..... -..+++++.+ |++|++|||+   |....        ..+++.|+++++..+.++++++|...
T Consensus        90 ~~~~~-~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~  157 (220)
T 2cvh_A           90 EQRRV-IGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF  157 (220)
T ss_dssp             HHHHH-HHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             HHHHH-HHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence            11111 1244567765 9999999997   43221        33556678887777888988988654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.34  E-value=2.6e-12  Score=114.85  Aligned_cols=127  Identities=16%  Similarity=0.099  Sum_probs=76.1

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC----------CCeEEEecccCCChhHHHHHHHhcc------------c
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR----------KKSVLLAACDTFRAAAYEQLLILGK------------Y  152 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~----------~g~V~l~~~d~~~~~~~~ql~~~~~------------~  152 (302)
                      .+++|++++|+||||||||||+..+++.+...          .+.|.+....-........+..+..            .
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~  105 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG  105 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence            36789999999999999999999999977642          4667665433221111111111111            1


Q ss_pred             CCCCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-----Cccch---HHHHHHHHHHHHHhchhhccccceee
Q psy2881         153 NDVPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG-----RLSTQ---SHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       153 ~~~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~-----d~~~~---~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ..+.-...  ........  .+ .+++++.+|++|++|||+     |....   ..++..|.++++..+.++++++|+..
T Consensus       106 l~l~~~~~~~~~~ls~g~--~~-~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~  182 (279)
T 1nlf_A          106 LLIQPLIGSLPNIMAPEW--FD-GLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK  182 (279)
T ss_dssp             EEECCCTTSCCCTTSHHH--HH-HHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             eEEeecCCCCcccCCHHH--HH-HHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence            11100000  00111221  12 345777899999999997     33333   67888888888777999999999876


Q ss_pred             hh
Q psy2881         223 LI  224 (302)
Q Consensus       223 lv  224 (302)
                      ..
T Consensus       183 ~~  184 (279)
T 1nlf_A          183 GA  184 (279)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.33  E-value=1.9e-12  Score=120.53  Aligned_cols=56  Identities=16%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHh------CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         167 AAIAFNAINIAQK------KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       167 ~~~~~~~la~al~------~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+..+-+||+|++      .+|+++|+|||+   |+.....+++.|.++.+ .+.++++++||+.+
T Consensus       283 Ge~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~  347 (365)
T 3qf7_A          283 GERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF  347 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH
T ss_pred             HHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH
Confidence            3344445788887      799999999998   99999999999999864 48899999999765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.33  E-value=1.8e-13  Score=142.09  Aligned_cols=136  Identities=13%  Similarity=0.091  Sum_probs=82.5

Q ss_pred             ccCCCcceecCC-------CeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHHHHHHhcccCCCCe
Q psy2881          87 SLEKPLIFKKCK-------PFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYEQLLILGKYNDVPV  157 (302)
Q Consensus        87 ~~l~~i~l~~~~-------g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~  157 (302)
                      .++++++|++.+       |++++|+|||||||||+++.+ |++.+  .-|.....  +....+..+.   +..+.+..-
T Consensus       770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq--~~~~l~v~d~---I~~rig~~d  843 (1022)
T 2o8b_B          770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA--EVCRLTPIDR---VFTRLGASD  843 (1022)
T ss_dssp             CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES--SEEEECCCSB---EEEECC---
T ss_pred             eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc--CcCCCCHHHH---HHHHcCCHH
Confidence            578889999876       899999999999999999999 88764  22311111  1000000000   000111100


Q ss_pred             e-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch-HHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         158 I-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ-SHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       158 ~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~-~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      . ......-......-+++++++.+|++||+||||   |+... ..++..|..+.+..+.+++++||+..++...+
T Consensus       844 ~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~  919 (1022)
T 2o8b_B          844 RIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS  919 (1022)
T ss_dssp             ------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred             HHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence            0 000000011112234778889999999999997   65553 44677888887655889999999988776544

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.32  E-value=1.8e-12  Score=131.54  Aligned_cols=131  Identities=15%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCC-eeecCCCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVP-VISEKKIT  164 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~-~~~~~~~~  164 (302)
                      .++++++|+ ++|++++|+|||||||||+++.|+|+.. ...|...  .....+.+...+  .+ ...+.. ........
T Consensus       596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v--pa~~~~i~~~~~--i~-~~~~~~d~l~~~~st  669 (800)
T 1wb9_A          596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--PAQKVEIGPIDR--IF-TRVGAADDLASGRST  669 (800)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCCE--EE-EEEC-----------
T ss_pred             eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc--chhcccceeHHH--HH-hhCCHHHHHHhhhhh
Confidence            356778888 8899999999999999999999999864 3333110  000000000000  00 000000 00000000


Q ss_pred             CHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHH-HHHHHHHHHHhchhhccccceeeh
Q psy2881         165 DPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHL-MRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       165 ~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l-~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      -......-..+...+.+|+++|+|||+   |+.....+ ...+..+.+..+.+++++||+..+
T Consensus       670 f~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el  732 (800)
T 1wb9_A          670 FMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL  732 (800)
T ss_dssp             CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             hhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH
Confidence            011111111122347899999999994   66655554 567777765457889999999765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.32  E-value=7.4e-12  Score=121.87  Aligned_cols=121  Identities=15%  Similarity=0.002  Sum_probs=84.3

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-EEecccCCChhHHHHHHHhcccCCCC----------eeecC-
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYNDVP----------VISEK-  161 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~----------~~~~~-  161 (302)
                      ..+.+|++++|+||||||||||++.+++...+.++++ .+...+..     .++.......+..          .+... 
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-----~~l~~~~~~~g~~~~~~~~~g~~~~~~~~  350 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-----AQLLRNAYSWGMDFEEMERQNLLKIVCAY  350 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-----HHHHHHHHTTSCCHHHHHHTTSEEECCCC
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-----HHHHHHHHHcCCCHHHHHhCCCEEEEEec
Confidence            4678999999999999999999999999998875555 55554431     1221111112211          11111 


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc-----chHHHHHHHHHHHHHhchhhcccccee
Q psy2881         162 -KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS-----TQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       162 -~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~-----~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                       ......+....++++++..+|++||+| |+   |..     ....+.+.++.+++ .+.++++++|+.
T Consensus       351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~  417 (525)
T 1tf7_A          351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSD  417 (525)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECS
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcc
Confidence             112345566667899999999999999 96   777     67777777777754 588999999987

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.31  E-value=1.4e-12  Score=120.16  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=69.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccCCCCeee
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYNDVPVIS  159 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~~~~~~~  159 (302)
                      .++++++|++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.|+....       ....+.++.+..+.....
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  122 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRP  122 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEEC
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccccc
Confidence            3567789999999999999999999999999999999999999999998874221       111122222222111111


Q ss_pred             cCCCCCH---HHHHHHHHHHHHhCCCCeEEEcCCCC
Q psy2881         160 EKKITDP---AAIAFNAINIAQKKNTDIVIVDTSGR  192 (302)
Q Consensus       160 ~~~~~~~---~~~~~~~la~al~~~~~llllDEP~d  192 (302)
                      .......   .....+.+......+.+++|+|+||-
T Consensus       123 ~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi  158 (337)
T 2qm8_A          123 SPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGV  158 (337)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcccccccchHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence            1111111   11223333334457899999999993

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.31  E-value=5.3e-13  Score=121.67  Aligned_cols=48  Identities=31%  Similarity=0.425  Sum_probs=39.8

Q ss_pred             Cccee-cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEecccCC
Q psy2881          91 PLIFK-KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLAACDTF  138 (302)
Q Consensus        91 ~i~l~-~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~~~d~~  138 (302)
                      +++.. +.+|++++|+||||||||||+++|+|+++|..|  +|.+...|.+
T Consensus        81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            45543 789999999999999999999999999998765  5777766643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.30  E-value=4e-12  Score=116.25  Aligned_cols=54  Identities=11%  Similarity=0.110  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         167 AAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       167 ~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      .+...-+||++++    .+|+++|+|||+   |+.....+++.|.++.  .+.++++++|+..
T Consensus       223 Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~  283 (322)
T 1e69_A          223 GEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI  283 (322)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH
Confidence            3344445888886    688999999998   8888889999998874  2678899999854

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.30  E-value=3.9e-12  Score=103.54  Aligned_cols=86  Identities=14%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      +|+.++|+||||+|||||++.+++.+.+.+. .+.+.+.+....                                    
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------------------------------   78 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------------------------------   78 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------------------------------
Confidence            7899999999999999999999999987532 455555443211                                    


Q ss_pred             HHhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchh-hccccce
Q psy2881         177 AQKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKK-IFELPYE  220 (302)
Q Consensus       177 al~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~-i~~~~hd  220 (302)
                      ++..+|++|++|||+  +...+..+++.+..+.+. +.+ +++++|.
T Consensus        79 ~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~-g~~~iiits~~  124 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNS-GKGFLLLGSEY  124 (149)
T ss_dssp             GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred             HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence            124579999999998  444466677777776654 555 6666663

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.29  E-value=2.4e-12  Score=130.00  Aligned_cols=123  Identities=11%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHH
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPA  167 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~  167 (302)
                      +++++|+   |++++|+|||||||||+++.|+|+.. ++.|.+.-  ....+.+...|   +....++.-. ...+....
T Consensus       569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp--a~~~~i~~v~~---i~~~~~~~d~-l~~g~S~~  639 (765)
T 1ewq_A          569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP--AEEAHLPLFDG---IYTRIGASDD-LAGGKSTF  639 (765)
T ss_dssp             CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS--SSEEEECCCSE---EEEECCC-------CCSHH
T ss_pred             eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee--hhccceeeHHH---hhccCCHHHH-HHhcccHH
Confidence            4455665   99999999999999999999999875 67775421  10000110000   0001111000 00011111


Q ss_pred             HHHHHHHHHHH--hCCCCeEEEcCCC------Cccch-HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         168 AIAFNAINIAQ--KKNTDIVIVDTSG------RLSTQ-SHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       168 ~~~~~~la~al--~~~~~llllDEP~------d~~~~-~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ......+++++  +.+|+++|+||||      |.... ..+++.|.+    .+.+++++||+..+.
T Consensus       640 ~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~  701 (765)
T 1ewq_A          640 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELT  701 (765)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH
Confidence            12222366666  8999999999994      33322 234444433    578899999997764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.29  E-value=4.8e-12  Score=105.57  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=66.0

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHH
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF  171 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  171 (302)
                      ++.+.+|+.++|+||||+|||||++.+++.+.+..| .+.+.+...    ..+.+.......        . ..      
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~--------~-~~------   92 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD----LIFRLKHLMDEG--------K-DT------   92 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH----HHHHHHHHHHHT--------C-CS------
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH----HHHHHHHHhcCc--------h-HH------
Confidence            456677999999999999999999999999986655 444432210    111111110000        0 01      


Q ss_pred             HHHHHHHhCCCCeEEEcCCC----CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         172 NAINIAQKKNTDIVIVDTSG----RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~----d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ..+  ....+|++|++|||+    |+.....+.+.+....+ .+.+++++||...
T Consensus        93 ~~~--~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~  144 (180)
T 3ec2_A           93 KFL--KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL  144 (180)
T ss_dssp             HHH--HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred             HHH--HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence            111  223579999999997    33444455555655543 3677788888543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.29  E-value=5.9e-13  Score=109.53  Aligned_cols=49  Identities=20%  Similarity=0.177  Sum_probs=45.6

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +++++||++++|++++|+||||||||||++.|+|++ |.+|+|.+.|.++
T Consensus        22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A           22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            567889999999999999999999999999999999 9999999888765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.29  E-value=1.3e-12  Score=121.54  Aligned_cols=120  Identities=11%  Similarity=0.019  Sum_probs=79.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee-cCCCCC-
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS-EKKITD-  165 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~-~~~~~~-  165 (302)
                      ++++++|.+++|++++|+||||||||||++.|+++++|+.|.|.+.+....+...      +.  ..+.++. +..... 
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~------~~--~~v~~v~~q~~~~~~  235 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPD------HP--NHVHLFYPSEAKEEE  235 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTT------CS--SEEEEECC-------
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccc------cC--CEEEEeecCcccccc
Confidence            4477899999999999999999999999999999999999999998754322110      11  1122222 111100 


Q ss_pred             -HHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         166 -PAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       166 -~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                       ......+.|+.++..+|+.+++||+.+.    +..+.+..+.. .+.+.+...|.
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~----~~~~~l~~l~~-g~~~~l~t~H~  286 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRGG----EAYDFINVAAS-GHGGSITSCHA  286 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCST----HHHHHHHHHHT-TCCSCEEEEEC
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchHH----HHHHHHHHHhc-CCCeEEEEECC
Confidence             1123456688888889999999999652    34455665542 23455556664

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.28  E-value=1.3e-11  Score=107.20  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=70.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhH--hhh-----CCCeEEEecccCCChhHHHHHHHhcccCCCC---------eee
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANY--FKK-----RKKSVLLAACDTFRAAAYEQLLILGKYNDVP---------VIS  159 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~--~~~-----~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~---------~~~  159 (302)
                      +++|++++|+|||||||||++..|++.  .++     .++.+++.+.+.+....   +..+.+..+..         +..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~   97 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER---LLAVAERYGLSGSDVLDNVAYAR   97 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH---HHHHHHHTTCCHHHHHHTEEEEE
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH---HHHHHHHcCCCHHHHhhCeEEEe
Confidence            578999999999999999999999994  444     45566666665433221   11122222221         111


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc-------c-----hHHHHHHHHHHHHHhchhhccccceee
Q psy2881         160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS-------T-----QSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       160 ~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~-------~-----~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      .....+.........+.....+|++|++|||+   +..       .     ...++..|.++++..+.++++++|...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~  175 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA  175 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence            11111111111111222233689999999997   432       2     234666677777777889999999544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.25  E-value=1.6e-12  Score=128.57  Aligned_cols=183  Identities=14%  Similarity=0.068  Sum_probs=93.8

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHH
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF  171 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  171 (302)
                      +++++.   ++|+||||||||||+++|+|++.| ++|.|.+.|.++...... ....+....+  +..+.....+...+.
T Consensus        42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~-~~~~~~~~i~--~v~Q~~~l~~~~tv~  115 (608)
T 3szr_A           42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV-NEDKWRGKVS--YQDYEIEISDASEVE  115 (608)
T ss_dssp             SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS-SSSCCEEEES--CC---CCCCCHHHHH
T ss_pred             cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC-ccccceeEEe--eecccccCCCHHHHH
Confidence            455542   999999999999999999999888 799999888774200000 0001112211  111111111112222


Q ss_pred             HHHHHH---------------------HhCCCCeEEEcCCC---------CccchHHHHHHHHHHHHH-hchhhccccce
Q psy2881         172 NAINIA---------------------QKKNTDIVIVDTSG---------RLSTQSHLMRELKKIKKV-IEKKIFELPYE  220 (302)
Q Consensus       172 ~~la~a---------------------l~~~~~llllDEP~---------d~~~~~~l~~~L~~l~~~-~~~~i~~~~hd  220 (302)
                      +.+..+                     ....|+++|+||||         |+.....+.+.+.++... .+.++++++|+
T Consensus       116 e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~  195 (608)
T 3szr_A          116 KEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN  195 (608)
T ss_dssp             TTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred             HHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence            222211                     12459999999993         666677888888886433 35566778888


Q ss_pred             eehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCCCCchh--HHHHhhhHh--CCceEEEecCCCC-CcC
Q psy2881         221 IFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGG--ILAAIAKKY--SIPLYFIGIGEKI-EDL  286 (302)
Q Consensus       221 ~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~~~~~g--~~~~~~~~~--~~pv~~~~~gq~v-~dl  286 (302)
                      ...+     ...++.-+..+...-...-.|+||.|-...+.  .+.+.+...  .+..-|+++-.+- .|+
T Consensus       196 ~d~a-----~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~  261 (608)
T 3szr_A          196 VDIA-----TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEI  261 (608)
T ss_dssp             SCTT-----TCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCT
T ss_pred             chhc-----cHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhc
Confidence            6654     11233333444322223457999998754432  123333322  2334566655444 444

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.20  E-value=2.8e-10  Score=106.92  Aligned_cols=173  Identities=14%  Similarity=0.128  Sum_probs=92.9

Q ss_pred             HCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHHHHH
Q psy2881          43 KADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTTIGK  118 (302)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTll~~  118 (302)
                      ..|++..-+.++++.+++.+. ....+...+.+.-..  ...+..-...++    --+++|+++.|+||||||||||+..
T Consensus       121 ~~gis~~~~~~i~~~a~~~~~-~~~~ta~~l~~~~~~--~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~  197 (400)
T 3lda_A          121 IKGISEAKADKLLNEAARLVP-MGFVTAADFHMRRSE--LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHT  197 (400)
T ss_dssp             STTCCHHHHHHHHHHHHHHSC-CSCCCHHHHHHHHHT--SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhcc-ccCCCHHHHHhhhcc--CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHH
Confidence            457777777777777665432 222333333221100  001111111111    1367899999999999999999996


Q ss_pred             HH--hHhhhC----CC-eEEEecccCCChhHHHHHHHhcccCCCC--------eeecCCCCCH-HHHHHHHHHHHHhCCC
Q psy2881         119 LA--NYFKKR----KK-SVLLAACDTFRAAAYEQLLILGKYNDVP--------VISEKKITDP-AAIAFNAINIAQKKNT  182 (302)
Q Consensus       119 La--g~~~~~----~g-~V~l~~~d~~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~la~al~~~~  182 (302)
                      ++  +..+++    ++ .+++.+.+.++...   +..+++..++.        .+........ ......+.......+|
T Consensus       198 la~~~~~p~~~Gg~~~~viyid~E~~~~~~r---l~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~  274 (400)
T 3lda_A          198 LAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR---LVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRF  274 (400)
T ss_dssp             HHHHTTSCGGGTCCSSEEEEEESSSCCCHHH---HHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCE
T ss_pred             HHHHhccCcccCCCCCcEEEEeCCCccCHHH---HHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCC
Confidence            64  444442    23 55666665544322   22233333332        1111111111 1111222222334689


Q ss_pred             CeEEEcCCC---Cccch------------HHHHHHHHHHHHHhchhhcccccee
Q psy2881         183 DIVIVDTSG---RLSTQ------------SHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       183 ~llllDEP~---d~~~~------------~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ++|++|+|+   +....            ..++..|+++++..+.++++++|..
T Consensus       275 ~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~  328 (400)
T 3lda_A          275 SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV  328 (400)
T ss_dssp             EEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             ceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence            999999997   32211            5678888899888899999999963

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.18  E-value=4.2e-12  Score=109.94  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=70.6

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCC-----hh-------HHHHHHHhcc-cCCCCeee
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFR-----AA-------AYEQLLILGK-YNDVPVIS  159 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~-----~~-------~~~ql~~~~~-~~~~~~~~  159 (302)
                      ..++|++++|+||||||||||+++|+|.++|  ..|.|.+.+.+...     .+       ..+.+..... ...+.+..
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~   91 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG   91 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence            4578999999999999999999999999985  57888887765421     00       1111111000 00000000


Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       160 ~~~~~~~~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..++.. ...    +. ..+..++++|+|  .|+.....+.+.+.     .+.+++++||+...+.
T Consensus        92 ~~yg~~-~~~----v~-~~l~~G~illLD--LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~  144 (219)
T 1s96_A           92 NYYGTS-REA----IE-QVLATGVDVFLD--IDWQGAQQIRQKMP-----HARSIFILPPSKIELD  144 (219)
T ss_dssp             EEEEEE-HHH----HH-HHHTTTCEEEEE--CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHH
T ss_pred             ccCCCC-HHH----HH-HHHhcCCeEEEE--ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHH
Confidence            001111 111    22 234568999999  78877777766654     3678999999876543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.17  E-value=1.1e-11  Score=108.73  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=26.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++++++||++++|++++|+|||||||||++++|++++
T Consensus        13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999987

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.15  E-value=2.3e-11  Score=112.97  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             cCCCcceecCC--CeEEEEEcCCCCCHHHHHHHHHhHhhhCC----CeEEEe----cccCC-ChhHHHHHHHhcc-----
Q psy2881          88 LEKPLIFKKCK--PFVIMIVGVNGVGKTTTIGKLANYFKKRK----KSVLLA----ACDTF-RAAAYEQLLILGK-----  151 (302)
Q Consensus        88 ~l~~i~l~~~~--g~ii~lvGpnGsGKTTll~~Lag~~~~~~----g~V~l~----~~d~~-~~~~~~ql~~~~~-----  151 (302)
                      +.+.+++++.+  |+.++|+||||||||||+++|+|++.|+.    |++.+.    +.+.. ......++....+     
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~  236 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY  236 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence            45578899999  99999999999999999999999999988    888763    22221 1110111111100     


Q ss_pred             ----cCCCCeeecCCCCCHH-HHH---------HHHHHHHH-hCCCCeEEEcC---CC---------CccchHHHHHHHH
Q psy2881         152 ----YNDVPVISEKKITDPA-AIA---------FNAINIAQ-KKNTDIVIVDT---SG---------RLSTQSHLMRELK  204 (302)
Q Consensus       152 ----~~~~~~~~~~~~~~~~-~~~---------~~~la~al-~~~~~llllDE---P~---------d~~~~~~l~~~L~  204 (302)
                          ..++.+..  .  +.. ...         ...++++. ..+|+++++||   |.         |...+..+.+.|.
T Consensus       237 ~~t~~~nl~~~~--~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~  312 (365)
T 1lw7_A          237 AVRHSHKIAFID--T--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK  312 (365)
T ss_dssp             HHHHCSSEEEES--S--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHH
T ss_pred             HHhccCCEEEEe--C--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH
Confidence                11121111  1  110 111         11244443 46899999998   52         5667778888888


Q ss_pred             HHHHHhchhhccccc
Q psy2881         205 KIKKVIEKKIFELPY  219 (302)
Q Consensus       205 ~l~~~~~~~i~~~~h  219 (302)
                      ++.+..+.++++++|
T Consensus       313 ~l~~~~~~~ililde  327 (365)
T 1lw7_A          313 KLLDKYKVPYIEIES  327 (365)
T ss_dssp             HHHHGGGCCCEEEEC
T ss_pred             HHHHHcCCCEEEeCC
Confidence            877655677776665

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.13  E-value=4.8e-12  Score=116.90  Aligned_cols=48  Identities=23%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      +++++ |++.+|++++|+||||||||||+++|+|+..|+.|.|.+.|.+
T Consensus        61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            56778 9999999999999999999999999999999999999998865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.09  E-value=7.4e-12  Score=111.77  Aligned_cols=38  Identities=32%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .++|+||||||||||+++|+|+..|++|+|.+.|.+..
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~   41 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP   41 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC
Confidence            58999999999999999999999999999999987653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.09  E-value=8.3e-10  Score=95.78  Aligned_cols=127  Identities=14%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc-------CCCCeee--------
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY-------NDVPVIS--------  159 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~-------~~~~~~~--------  159 (302)
                      -+++|++++|+|||||||||++..++....+.++.|.+.+.+.......+....++-.       ..+.+..        
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~   98 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGK   98 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccc
Confidence            4678999999999999999998888777666777888877654321111111111100       0111111        


Q ss_pred             --------cCCCCCHHHHHHHHHHHHH-hCCCCeEEEcCCC-----CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         160 --------EKKITDPAAIAFNAINIAQ-KKNTDIVIVDTSG-----RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       160 --------~~~~~~~~~~~~~~la~al-~~~~~llllDEP~-----d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                              .....+..... +.+.+++ ..+|+++++|+++     |.......+..|.++.+..+.++++++|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~  174 (247)
T 2dr3_A           99 SKEYEKYIVHDLTDIREFI-EVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV  174 (247)
T ss_dssp             --CCCSCBCSCCSSHHHHH-HHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             ccccccccccCccCHHHHH-HHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence                    00112222222 2222222 2579999999996     3334456667777777777888888888644

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.08  E-value=1.9e-11  Score=116.27  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=44.5

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +++++ |++.+|++++|+||||||||||+++|+|+..|+.|.|.+.|.
T Consensus       147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence            56788 999999999999999999999999999999999999999987

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.04  E-value=6.1e-11  Score=113.64  Aligned_cols=51  Identities=18%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+++++||++++ ++++|+||||||||||+++|+|+++|++|+|.+.|.+..
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            367899999999 999999999999999999999999999999999998764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.01  E-value=1.5e-10  Score=105.20  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=36.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEeccc
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACD  136 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d  136 (302)
                      .+|++++|+|||||||||++++|++++.  |++|+|.+.+.|
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d  119 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence            7899999999999999999999999998  999999995444

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.94  E-value=2.5e-09  Score=98.27  Aligned_cols=49  Identities=10%  Similarity=0.150  Sum_probs=41.9

Q ss_pred             HHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         173 AINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      ++|++++.+|+++|+|||+   |+.....+++.|.++.+. +.+++++|||..
T Consensus       264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~  315 (339)
T 3qkt_A          264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE  315 (339)
T ss_dssp             HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG
T ss_pred             HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH
Confidence            4778888999999999998   888889999999888644 678999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.92  E-value=2.9e-10  Score=103.00  Aligned_cols=45  Identities=22%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      ++++++||++++|++++|+||||||||||++.|+|++   +|+|....
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v  158 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA  158 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence            5788999999999999999999999999999999998   79997643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.91  E-value=2.5e-09  Score=100.89  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCCcceecCCCeE--EEEEcCCCCCHHHHHHHHHhHh
Q psy2881          89 EKPLIFKKCKPFV--IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        89 l~~i~l~~~~g~i--i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++++||++.+|++  ++|+||||||||||+++|+|..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            6788999999999  9999999999999999999974

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.91  E-value=3.8e-10  Score=103.57  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh-HhhhCCCeEEEecccCCChhHH-HHHHHhcccCCCCeeecC---CCCCHHHHHHHHHHH
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN-YFKKRKKSVLLAACDTFRAAAY-EQLLILGKYNDVPVISEK---KITDPAAIAFNAINI  176 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag-~~~~~~g~V~l~~~d~~~~~~~-~ql~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~  176 (302)
                      +.|+||||+||||+++.+++ ++.+..|.+.+.+.+....... ....+..   ...++...   ..........+.+..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~  115 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS---SPYHLEITPSDMGNNDRIVIQELLKE  115 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE---CSSEEEECCC----CCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec---ccceEEecHhhcCCcchHHHHHHHHH
Confidence            89999999999999999999 6788899998887654321110 1111111   11111111   011100012222221


Q ss_pred             H--------------HhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         177 A--------------QKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       177 a--------------l~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +              +..+|+++|+|||.  |......+++.+.+..  .+.++++++|+...+
T Consensus       116 ~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          116 VAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI  177 (354)
T ss_dssp             HTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred             HHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence            1              24578999999998  5555555666665542  256788889976543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.90  E-value=2.2e-09  Score=98.76  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=45.2

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA  140 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~  140 (302)
                      ++++++...+|.+++|+|+|||||||+++.|++.+.+.+++|.+.+.|++..
T Consensus        46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~   97 (341)
T 2p67_A           46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP   97 (341)
T ss_dssp             HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred             HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence            3455677788999999999999999999999999999999999999998643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.88  E-value=5.7e-10  Score=108.04  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeec----CCC
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE----KKI  163 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~----~~~  163 (302)
                      +++++++.+.+|++++|+||||||||||++.|+++++|+.|.|.+.+.+-.....         ...+.+...    ...
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---------~~~v~~~~r~~~~~~~  319 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---------ENWIAEVTRTGMGEGE  319 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---------SSEEEEECBCCSSSCC
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---------CCeEEEEeecccccCC
Confidence            3456778888999999999999999999999999999999999998765332110         000011110    011


Q ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEcCCCCcc
Q psy2881         164 TDPAAIAFNAINIAQKKNTDIVIVDTSGRLS  194 (302)
Q Consensus       164 ~~~~~~~~~~la~al~~~~~llllDEP~d~~  194 (302)
                      ...    .+.+..++-++||.++++|-.+..
T Consensus       320 ~~~----~~~l~~~LR~~PD~iivgEir~~E  346 (511)
T 2oap_1          320 IDM----YDLLRAALRQRPDYIIVGEVRGRE  346 (511)
T ss_dssp             BCH----HHHHHTTGGGCCSEEEESCCCSTH
T ss_pred             cCH----HHHHHHhhccCCCeEEeCCcCHHH
Confidence            122    233445667899999999987543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.85  E-value=7.5e-10  Score=100.21  Aligned_cols=44  Identities=32%  Similarity=0.370  Sum_probs=21.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH-hhhCCCeEEEecccC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY-FKKRKKSVLLAACDT  137 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~-~~~~~g~V~l~~~d~  137 (302)
                      .++++++|++      +|+||||||||||++.|+|. +.|.+| |.+.|.+.
T Consensus        12 ~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~   56 (301)
T 2qnr_A           12 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI   56 (301)
T ss_dssp             ------CEEE------EEEEETTSSHHHHHHHHHC-----------------
T ss_pred             EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence            4677888876      99999999999999999997 778888 77666554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.81  E-value=2.8e-09  Score=93.21  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH---hHhhhCCCeEEEecc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLA---NYFKKRKKSVLLAAC  135 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~La---g~~~~~~g~V~l~~~  135 (302)
                      ++++++|+|||||||||+++.|+   |+..++.|+|.+.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~   66 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI   66 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence            47899999999999999999999   888888888877654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.81  E-value=9.5e-10  Score=95.29  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=22.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHH-hHh
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA-NYF  123 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~La-g~~  123 (302)
                      ..+++||++.+|++++|+|||||||||++++|+ +++
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999 998

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.80  E-value=1e-08  Score=94.72  Aligned_cols=116  Identities=17%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIAF  171 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~~  171 (302)
                      +++|+++.|.||+|+||||++..++......+++|.+.+.+......      +++..++.    .+..  ..... ...
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~------~a~~lG~~~~~l~i~~--~~~~e-~~l  128 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE------YAKKLGVDTDSLLVSQ--PDTGE-QAL  128 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH------HHHHTTCCGGGCEEEC--CSSHH-HHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH------HHHHcCCCHHHeEEec--CCCHH-HHH
Confidence            46899999999999999999999998888778888887765422111      12223321    1111  11222 121


Q ss_pred             HHHHHHHh--CCCCeEEEcCCCCcc---------------ch-HHHHHHHHHH---HHHhchhhcccccee
Q psy2881         172 NAINIAQK--KNTDIVIVDTSGRLS---------------TQ-SHLMRELKKI---KKVIEKKIFELPYEI  221 (302)
Q Consensus       172 ~~la~al~--~~~~llllDEP~d~~---------------~~-~~l~~~L~~l---~~~~~~~i~~~~hd~  221 (302)
                      + ++++++  .+|++|++|+++-..               .+ ..+.+.++++   .+..+.++++++|-.
T Consensus       129 ~-~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~  198 (349)
T 2zr9_A          129 E-IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR  198 (349)
T ss_dssp             H-HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred             H-HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence            2 344454  459999999997111               11 1233444444   466688888888844

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.79  E-value=3.2e-09  Score=102.99  Aligned_cols=48  Identities=6%  Similarity=0.153  Sum_probs=43.3

Q ss_pred             HHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         174 INIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       174 la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      ||++++.+|  +++|+|||+   |+.....+.+.|+++.+  +.+++++||+..+
T Consensus       408 la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~  460 (517)
T 4ad8_A          408 LAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQI  460 (517)
T ss_dssp             HHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHH
T ss_pred             HHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence            889999999  999999997   99999999999999975  6889999998654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.78  E-value=1.5e-08  Score=85.58  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh-----hhCCCeEE
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF-----KKRKKSVL  131 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~-----~~~~g~V~  131 (302)
                      ++++  |++.+|..++|+|+||||||||++.|+|..     .|+.|.+.
T Consensus        17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~   63 (210)
T 1pui_A           17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ   63 (210)
T ss_dssp             SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred             CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence            4444  788899999999999999999999999987     66666554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.78  E-value=1.1e-08  Score=91.30  Aligned_cols=65  Identities=18%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          70 TEQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        70 ~~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+.+++.+.+.+..-+.  .+++++++.+++|  ++|+||||+|||||++.|++.+.+  +.|.+.+.++.
T Consensus        15 ~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~   81 (274)
T 2x8a_A           15 LEDIREELTMAILAPVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL   81 (274)
T ss_dssp             HHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence            44555555555443332  3567888988888  999999999999999999998876  57888877654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.77  E-value=3.8e-09  Score=89.21  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      |+++.+|++++|+|||||||||++++|+++++    .+.+.+.++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~   41 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHT   41 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceec
Confidence            45677899999999999999999999999963    455555443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.77  E-value=4.9e-08  Score=90.19  Aligned_cols=236  Identities=17%  Similarity=0.165  Sum_probs=115.7

Q ss_pred             HHHHHHHHHH----HHHHHhhhcC-cCCh--HHHHHHHH----------HHHHCCCChHHHHHHHHHHHHHHh-cCCCCC
Q psy2881           8 RLKESLSKTA----CNLKSLIVNK-KIDK--NLYNELES----------DLLKADVGFETTQFLLNELKKIIY-SKKLFN   69 (302)
Q Consensus         8 ~~~~~~~~~~----~~~~~~~~~~-~~~~--~~~~~l~~----------~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   69 (302)
                      ++.++++.++    ..+..++... .++.  +.++++.+          .|-..|..++.+.++.....+... +.....
T Consensus        45 ~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~  124 (357)
T 2e87_A           45 REELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNE  124 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence            3444555554    3344455443 3333  67777774          444557777766665555544433 222112


Q ss_pred             HHHHHHHHHHHHHHHhhccC-------------CCcceec-CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          70 TEQVRNVLHNLLVNLLKSLE-------------KPLIFKK-CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        70 ~~~~~~~l~~~l~~~l~~~l-------------~~i~l~~-~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .+..++.....+.+.++..-             .... .+ ...-.++++|++|||||||++.|++...      ...+.
T Consensus       125 ~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~------~~~~~  197 (357)
T 2e87_A          125 IAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLP-VVDLEIPTVVIAGHPNVGKSTLLKALTTAKP------EIASY  197 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSC-CCCSSSCEEEEECSTTSSHHHHHHHHCSSCC------EEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCCCCEEEEECCCCCCHHHHHHHHhCCCC------ccCCC
Confidence            23333444444433322111             1100 11 2445899999999999999999987431      11111


Q ss_pred             cCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCC--ccc--hHHHHHHHHHHHHHhc
Q psy2881         136 DTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGR--LST--QSHLMRELKKIKKVIE  211 (302)
Q Consensus       136 d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~d--~~~--~~~l~~~L~~l~~~~~  211 (302)
                      +..             ..........                 ..+.++.++|+||.  ...  ...+.  ...+.    
T Consensus       198 ~~~-------------t~~~~~~~~~-----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~----  241 (357)
T 2e87_A          198 PFT-------------TRGINVGQFE-----------------DGYFRYQIIDTPGLLDRPISERNEIE--KQAIL----  241 (357)
T ss_dssp             TTC-------------SSCEEEEEEE-----------------ETTEEEEEEECTTTSSSCSTTSCHHH--HHHHH----
T ss_pred             CCe-------------eeceeEEEEE-----------------ecCceEEEEeCCCccccchhhhhHHH--HHHHH----
Confidence            100             0000000000                 01246889999982  111  01111  01111    


Q ss_pred             hhhccccceeehhhcCCCCh----hHHH-HHHHHHhhc-C-CCeEEEecCCCCCchh--HHHHhhhHhCCceEEEe--cC
Q psy2881         212 KKIFELPYEIFLIIDGNTGQ----NTLS-QIKEFSKIL-R-ITGLIITKLDGTTKGG--ILAAIAKKYSIPLYFIG--IG  280 (302)
Q Consensus       212 ~~i~~~~hd~~lvl~~~~g~----~~~~-~~~~f~~~~-~-~~~~i~tk~d~~~~~g--~~~~~~~~~~~pv~~~~--~g  280 (302)
                       ......+-..+|+|++...    +... ....+.... + +--++.||.|......  .+.+.+...+.|+.+++  +|
T Consensus       242 -~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          242 -ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             -GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred             -HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence             1112345667778866432    2111 122232222 2 2246789999865433  24555556788999988  78


Q ss_pred             CCCCcCc
Q psy2881         281 EKIEDLQ  287 (302)
Q Consensus       281 q~v~dl~  287 (302)
                      +.++++.
T Consensus       321 ~gi~~l~  327 (357)
T 2e87_A          321 TGIDLVK  327 (357)
T ss_dssp             BTHHHHH
T ss_pred             cCHHHHH
Confidence            8887664

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.76  E-value=8.9e-08  Score=91.34  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=78.0

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccC----------------
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYN----------------  153 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~----------------  153 (302)
                      ++..-+.+|+++.|.|++|+||||++..+++...+. +..|.+.+.+.........+.  +...                
T Consensus       195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~--~~~~~~~~~~l~~g~l~~~~  272 (454)
T 2r6a_A          195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRML--CAEGNINAQNLRTGKLTPED  272 (454)
T ss_dssp             HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHH--HHHHTCCHHHHHTSCCCHHH
T ss_pred             hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcCCCCHHH
Confidence            344457899999999999999999999999988774 458999886653211111100  0000                


Q ss_pred             ------------CCCeeecCC-CCCHHHHHHHHHHHHHh--CCCCeEEEcCCC--C-cc----ch----HHHHHHHHHHH
Q psy2881         154 ------------DVPVISEKK-ITDPAAIAFNAINIAQK--KNTDIVIVDTSG--R-LS----TQ----SHLMRELKKIK  207 (302)
Q Consensus       154 ------------~~~~~~~~~-~~~~~~~~~~~la~al~--~~~~llllDEP~--d-~~----~~----~~l~~~L~~l~  207 (302)
                                  ..+++.... ........  ..++.+.  .+|++|++|+++  . ..    +.    ..++..|+.++
T Consensus       273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA  350 (454)
T 2r6a_A          273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA  350 (454)
T ss_dssp             HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence                        112222221 12332222  2334443  689999999996  2 11    11    45677788888


Q ss_pred             HHhchhhccccc
Q psy2881         208 KVIEKKIFELPY  219 (302)
Q Consensus       208 ~~~~~~i~~~~h  219 (302)
                      +..+.++++++|
T Consensus       351 ke~~i~vi~~sq  362 (454)
T 2r6a_A          351 RELEVPVIALSQ  362 (454)
T ss_dssp             HHHTCCEEEEEC
T ss_pred             HHhCCeEEEEec
Confidence            888888888888

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.75  E-value=1.3e-08  Score=96.03  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee--cCCCCCHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS--EKKITDPAAIAFNAI  174 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~--~~~~~~~~~~~~~~l  174 (302)
                      .+|++++|+||||||||||++.|++++.|.+|+|.+.+.++....           .++....  ...+....    ..+
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~-----------~~~~q~~v~~~~g~~f~----~~l  229 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI-----------DGIGQTQVNPRVDMTFA----RGL  229 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-----------SSSEEEECBGGGTBCHH----HHH
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc-----------CCcceEEEccccCcCHH----HHH
Confidence            578999999999999999999999999999999999986652100           0010000  00111222    234


Q ss_pred             HHHHhCCCCeEEEcCCCCcc
Q psy2881         175 NIAQKKNTDIVIVDTSGRLS  194 (302)
Q Consensus       175 a~al~~~~~llllDEP~d~~  194 (302)
                      ..++-++|+++++.|--|..
T Consensus       230 r~~Lrq~pd~i~vgEiRd~e  249 (418)
T 1p9r_A          230 RAILRQDPDVVMVGEIRDLE  249 (418)
T ss_dssp             HHHGGGCCSEEEESCCCSHH
T ss_pred             HHHhccCCCeEEEcCcCCHH
Confidence            45566899999999865543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.74  E-value=6.3e-09  Score=86.93  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .+.+|++++|+|||||||||+++.|++.  +..|.|.+.+.+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~   44 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD   44 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence            3678999999999999999999999997  678899987754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.73  E-value=1e-08  Score=87.44  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEeccc
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACD  136 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d  136 (302)
                      .++|++++|+||||||||||+++|++++.|.   .|.|.+++..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence            4689999999999999999999999999975   4555555544

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.72  E-value=1.3e-07  Score=87.27  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=68.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      +++|+++.|.||+|||||||+..+++...+.+|+|.+.+.+. ......+++....+.  + .+...  ...... ...+
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~--l-~i~~~--~~~e~~-l~~~  131 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKS--L-LISQP--DHGEQA-LEIV  131 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGG--C-EEECC--SSHHHH-HHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhh--h-hhhhc--cCHHHH-HHHH
Confidence            468999999999999999999999999998889887765443 332211222111111  1 11211  122221 1212


Q ss_pred             HH-HHhCCCCeEEEcCCCCcc---------------c----hHHHHHHHHHHHHHhchhhccccc
Q psy2881         175 NI-AQKKNTDIVIVDTSGRLS---------------T----QSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       175 a~-al~~~~~llllDEP~d~~---------------~----~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .. ....+|+++++|+-....               .    -..++..|..+++..+.+++++.|
T Consensus       132 ~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq  196 (356)
T 3hr8_A          132 DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ  196 (356)
T ss_dssp             HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred             HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence            11 123679999999764111               1    112344555666666777777665

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.67  E-value=2.8e-08  Score=91.70  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA  140 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~  140 (302)
                      .++.+++|+|++|||||||++.|++.+.+.+|+|.+.+.|++..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence            35789999999999999999999999999999999999998643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.67  E-value=1.7e-07  Score=86.52  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=57.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---HH----HHHHHhcccCCCCeeecCCCCCH---H
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---AY----EQLLILGKYNDVPVISEKKITDP---A  167 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---~~----~ql~~~~~~~~~~~~~~~~~~~~---~  167 (302)
                      +..+++|+|+.||||||++..|++.+...+.+|.+.+.|+....   +.    .....+....++.+.........   .
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~  157 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT  157 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence            45689999999999999999999998888889999998865322   11    11111111222222222222221   2


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCCC
Q psy2881         168 AIAFNAINIAQKKNTDIVIVDTSGR  192 (302)
Q Consensus       168 ~~~~~~la~al~~~~~llllDEP~d  192 (302)
                      ....+.+......+++++|+|+||-
T Consensus       158 ~~t~d~i~~~~~~~~~~iiiDTpGi  182 (355)
T 3p32_A          158 RATRETVVLLEAAGFDVILIETVGV  182 (355)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSC
T ss_pred             HHHHHHHHHHhhCCCCEEEEeCCCC
Confidence            2233445444557899999999993

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.63  E-value=5.8e-08  Score=82.29  Aligned_cols=44  Identities=25%  Similarity=0.293  Sum_probs=39.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      ..+|.+++|+|||||||||+++.|++.+.+.+|.|.+.+.|.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            46789999999999999999999999999999999998877653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.60  E-value=3.4e-08  Score=83.93  Aligned_cols=39  Identities=41%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      .++|++++|+|||||||||+++.|++++.|   .+.+...|.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~   41 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH   41 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence            368999999999999999999999999876   566666654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.60  E-value=1.7e-08  Score=85.58  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++|++++|+||||||||||+++|+++++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4689999999999999999999999985

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.59  E-value=1.2e-08  Score=92.30  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE---ecccCC
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL---AACDTF  138 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l---~~~d~~  138 (302)
                      ++..|++++|+||||||||||+++|+|+..|+.|+|.+   .|.++.
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t  211 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT  211 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence            34578999999999999999999999999999999998   776654

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.57  E-value=1.6e-09  Score=94.18  Aligned_cols=45  Identities=20%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ++++.+ ++++|+|||||||||++++|+|++.|++|.|.+.+.+..
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~   66 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEA   66 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcc
Confidence            455544 789999999999999999999999999999999988763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.54  E-value=2.1e-07  Score=84.63  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh--------hhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF--------KKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~--------~~~~g~V~l~~~d~~  138 (302)
                      ++++|+|+|||||||+++.|++..        .++.|+|.+++.++.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            689999999999999999999987        678999999887653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.53  E-value=1e-08  Score=96.80  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=28.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      .++++++|++      +|+||||||||||++.|+|...+.
T Consensus        25 ~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~   58 (418)
T 2qag_C           25 SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS   58 (418)
T ss_dssp             TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC
T ss_pred             EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC
Confidence            4677888875      999999999999999999987643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.51  E-value=1.3e-07  Score=79.92  Aligned_cols=41  Identities=22%  Similarity=0.170  Sum_probs=34.4

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      +..+|++++|+|||||||||+++.|++.+    |.+.+.+.+...
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~   65 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS   65 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc
Confidence            34679999999999999999999999987    889998877654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.49  E-value=1.3e-07  Score=84.00  Aligned_cols=45  Identities=22%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      +++++++.+++|  ++|+||||+||||+++.|++.+.  .|.|.+.+.+
T Consensus        64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~  108 (278)
T 1iy2_A           64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD  108 (278)
T ss_dssp             HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred             HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHH
Confidence            466788888887  88999999999999999999875  6778877654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.49  E-value=1.7e-07  Score=82.03  Aligned_cols=45  Identities=22%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      +++++++.+++|  ++|+||||+||||+++.|++.+.  .|.|.+.+.+
T Consensus        40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~   84 (254)
T 1ixz_A           40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD   84 (254)
T ss_dssp             HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred             HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHH
Confidence            566778888887  88999999999999999999875  6778777644

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.48  E-value=1.8e-08  Score=91.36  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=26.4

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL  132 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l  132 (302)
                      +++.+|++++|+||||||||||++.|+|...+..|+|.+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            566789999999999999999999999999999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.48  E-value=8.8e-08  Score=90.32  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++++|+++.++.++|+|+||||||||++.|++.
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            478999999999999999999999999999998

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.48  E-value=4.6e-08  Score=88.45  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE---ecccCC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL---AACDTF  138 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l---~~~d~~  138 (302)
                      ..+|++++|+||||||||||++.|+ .+.|..|+|.+   .|.++.
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t  206 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT  206 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence            4578999999999999999999999 98999999998   666654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.47  E-value=8.1e-08  Score=80.18  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      |++++|+|||||||||+++.|++   +.+|.+.+.+.+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~   36 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI   36 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence            68999999999999999999987   677889988754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.47  E-value=6.1e-08  Score=81.96  Aligned_cols=44  Identities=25%  Similarity=0.348  Sum_probs=37.0

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE--EEecccC
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV--LLAACDT  137 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V--~l~~~d~  137 (302)
                      ++..++|++++|+|||||||||+++.|++.+. ..|.+  .+.+.+.
T Consensus        19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A           19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred             HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence            44557899999999999999999999999998 56777  7776554

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.46  E-value=9e-07  Score=81.34  Aligned_cols=174  Identities=11%  Similarity=0.085  Sum_probs=76.0

Q ss_pred             HHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHHH
Q psy2881          41 LLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTTI  116 (302)
Q Consensus        41 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTll  116 (302)
                      +...|++...+.++++.+.+.+.. ...+...+.+....  ...+..-...++    --+++|+++.|.||+|+||||++
T Consensus        63 ~~~~~is~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~--~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla  139 (343)
T 1v5w_A           63 CNVKGLSEAKVDKIKEAANKLIEP-GFLTAFEYSEKRKM--VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS  139 (343)
T ss_dssp             -----------------------C-CSEEHHHHHHHGGG--CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHhhccc-CCCcHHHHHhhhcc--cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence            344677777777777776655422 22233333211000  001111111111    14678999999999999999999


Q ss_pred             HHHHhHhh-h-----CCCeEEEecccC-CChhHHHHHHHhcccCCCC--------eeecCCCCCHHHHHHHHHHHHH-h-
Q psy2881         117 GKLANYFK-K-----RKKSVLLAACDT-FRAAAYEQLLILGKYNDVP--------VISEKKITDPAAIAFNAINIAQ-K-  179 (302)
Q Consensus       117 ~~Lag~~~-~-----~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~~~~~~~~~la~al-~-  179 (302)
                      ..++.... |     .++.+.+.+.+. +..   +++..+.+..++.        ++......+........+...+ . 
T Consensus       140 ~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~---~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~  216 (343)
T 1v5w_A          140 HTLCVTAQLPGAGGYPGGKIIFIDTENTFRP---DRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEE  216 (343)
T ss_dssp             HHHHHHTTSCBTTTBCCCEEEEEESSSCCCH---HHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhc
Confidence            99998643 2     356777666543 232   2333333333322        1112122221111111111111 2 


Q ss_pred             -CCCCeEEEcCCC---Cc--c-----c-----hHHHHHHHHHHHHHhchhhccccce
Q psy2881         180 -KNTDIVIVDTSG---RL--S-----T-----QSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       180 -~~~~llllDEP~---d~--~-----~-----~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                       .++++|++|+.+   +.  .     .     ...++..|..+++..+.+++++.|-
T Consensus       217 ~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~  273 (343)
T 1v5w_A          217 AGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM  273 (343)
T ss_dssp             CSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence             679999999987   11  1     0     2345556677777778787777774

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.46  E-value=1.1e-07  Score=78.77  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=34.3

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS  129 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~  129 (302)
                      +++++++.+| +++|+|||||||||++..|++.+.+..|+
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            6788888888 99999999999999999999998776554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.43  E-value=1.3e-07  Score=79.17  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      -.++|+|+||||||||++.+++...+
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            36899999999999999999997654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.42  E-value=8.2e-08  Score=80.95  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK  128 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g  128 (302)
                      ++.+|++++|+|||||||||+++.|++.+.|+.|
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            4678999999999999999999999999866433

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.41  E-value=1.1e-07  Score=79.22  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~  133 (302)
                      +|++++|+|||||||||+++.|++.+++ ..|.|...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            6899999999999999999999998863 44555543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.40  E-value=5.7e-08  Score=80.63  Aligned_cols=39  Identities=31%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~  138 (302)
                      ++++|+|+|||||||+++.|++++.|+   .|.|.+++.++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~   44 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF   44 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence            589999999999999999999999998   789999887754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.40  E-value=1.5e-07  Score=81.44  Aligned_cols=41  Identities=29%  Similarity=0.497  Sum_probs=36.0

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +.+.++|++++|.|||||||||+++.|+++    +|+|.+.+.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            445678999999999999999999999997    78899988763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=1.5e-07  Score=79.40  Aligned_cols=37  Identities=27%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ..++++||++.+|.+++|+||+||||||+.+.|+..+
T Consensus        13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4678999999999999999999999999999999877

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=98.39  E-value=9.6e-07  Score=74.21  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=87.1

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881         100 FVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus       100 ~ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      .++++. +..|+||||+...||..+...+.+|.+.+.|.+....  .+.. ....+++++....     ....+.+. .+
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~--~~~~-~~~~~~~~~~~~~-----~~l~~~l~-~l   72 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT--NWSK-AGKAAFDVFTAAS-----EKDVYGIR-KD   72 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHT-TSCCSSEEEECCS-----HHHHHTHH-HH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH--HHHh-cCCCCCcEEecCc-----HHHHHHHH-Hh
Confidence            367787 4678999999999999999888899999999764322  1111 1223344444322     22223333 35


Q ss_pred             hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHH-HHHHh------hcCCCeEEE
Q psy2881         179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQI-KEFSK------ILRITGLII  251 (302)
Q Consensus       179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~-~~f~~------~~~~~~~i~  251 (302)
                      ..++|++|+|+|+...  ......+.    .        ++.+.++...+.....+... +.+..      ..++ ++|+
T Consensus        73 ~~~yD~viiD~~~~~~--~~~~~~l~----~--------ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~  137 (206)
T 4dzz_A           73 LADYDFAIVDGAGSLS--VITSAAVM----V--------SDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLI  137 (206)
T ss_dssp             TTTSSEEEEECCSSSS--HHHHHHHH----H--------CSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEE
T ss_pred             cCCCCEEEEECCCCCC--HHHHHHHH----H--------CCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEE
Confidence            6789999999997442  11111111    1        22333333333211222222 22221      2234 8899


Q ss_pred             ecCCCC-CchhHHHHhhhHhCCceE
Q psy2881         252 TKLDGT-TKGGILAAIAKKYSIPLY  275 (302)
Q Consensus       252 tk~d~~-~~~g~~~~~~~~~~~pv~  275 (302)
                      |+.+.. .....+.+.+.+++.|+.
T Consensus       138 N~~~~~~~~~~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          138 TRKIEMATMLNVLKESIKDTGVKAF  162 (206)
T ss_dssp             CSBCTTEEEEHHHHHHHHHHTCCBC
T ss_pred             eccCCCchHHHHHHHHHHHcCCcee
Confidence            999964 334556777777887765

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.39  E-value=1.7e-07  Score=85.36  Aligned_cols=42  Identities=31%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCC
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFR  139 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~  139 (302)
                      .+-+++|+|||||||||++++|++++.  |.+|+|.+.+.|.+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            456999999999999999999999998  568899998888653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.38  E-value=7.8e-07  Score=81.01  Aligned_cols=174  Identities=14%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             HHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHH
Q psy2881          39 SDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTT  114 (302)
Q Consensus        39 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTT  114 (302)
                      +.+...|++...+.++++.+.+.+.. ...+...+.+....  ...+..-...++    --+++|+++.|.||+|+||||
T Consensus        46 ~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~  122 (324)
T 2z43_A           46 DLSVAAGIPLSTAQKIIKEARDALDI-RFKTALEVKKERMN--VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQ  122 (324)
T ss_dssp             ---------------------------CCCCHHHHHHHHCS--CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHhhccc-Cccchhhhhhhhcc--CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhH
Confidence            34445788888888888888766532 23444443211000  001111111111    135789999999999999999


Q ss_pred             HHHHHHhHhh-hC-----CCeEEEecccC-CChhHHHHHHHhcccCCCCe-------eecCCCCCHHH--HHHHHHHHHH
Q psy2881         115 TIGKLANYFK-KR-----KKSVLLAACDT-FRAAAYEQLLILGKYNDVPV-------ISEKKITDPAA--IAFNAINIAQ  178 (302)
Q Consensus       115 ll~~Lag~~~-~~-----~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~la~al  178 (302)
                      ++..++.... +.     ++.+.+.+.+. ++.   +++..+.+..++..       +... ......  .....+...+
T Consensus       123 la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~---~~l~~~~~~~g~~~~~~~~~l~~~~-~~~~~~~~~~l~~l~~~~  198 (324)
T 2z43_A          123 LCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW---ERIENMAKALGLDIDNVMNNIYYIR-AINTDHQIAIVDDLQELV  198 (324)
T ss_dssp             HHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH---HHHHHHHHHTTCCHHHHHHTEEEEE-CCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHhCCCHHHHhccEEEEe-CCCHHHHHHHHHHHHHHH
Confidence            9999998654 32     56777766543 332   23333333333321       1111 112111  1111122122


Q ss_pred             -h-CCCCeEEEcCCC---Cc--------cc----hHHHHHHHHHHHHHhchhhccccc
Q psy2881         179 -K-KNTDIVIVDTSG---RL--------ST----QSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       179 -~-~~~~llllDEP~---d~--------~~----~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                       . .++++|++|+.+   +.        ..    ...++..|..+++..+.+++++.|
T Consensus       199 ~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq  256 (324)
T 2z43_A          199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ  256 (324)
T ss_dssp             HHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence             2 689999999987   11        01    134555666677777777777666

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.38  E-value=1.7e-06  Score=82.92  Aligned_cols=95  Identities=22%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +..++.+.+.+.. ++  ..++++++.+++|  +.|+||+|+||||+++.+++....  --+.+.+.+....        
T Consensus        22 ~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~~~~~--------   88 (476)
T 2ce7_A           22 EEAIEELKEVVEF-LKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVEL--------   88 (476)
T ss_dssp             HHHHHHHHHHHHH-HHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGTTTC--------
T ss_pred             HHHHHHHHHHHHH-hhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHHHHHH--------
Confidence            4444445544332 22  1344556666655  789999999999999999996531  1123333222110        


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                               +.    ..........+++|....|.+|++||+.
T Consensus        89 ---------~~----g~~~~~~r~lf~~A~~~~p~ILfIDEid  118 (476)
T 2ce7_A           89 ---------FV----GVGAARVRDLFAQAKAHAPCIVFIDEID  118 (476)
T ss_dssp             ---------CT----THHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred             ---------Hh----cccHHHHHHHHHHHHhcCCCEEEEechh
Confidence                     00    0122344556778888899999999994

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.35  E-value=1.7e-07  Score=86.61  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~  133 (302)
                      +|++++|+||||||||||++.|+|... +..|.|.+.
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~  250 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV  250 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence            689999999999999999999999999 999999876

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.33  E-value=2.9e-06  Score=78.41  Aligned_cols=117  Identities=19%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccC-CCCeeecCCCCCHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYN-DVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      +++|+++.|.||+|+||||++..++......+++|.+.+.+-.....  ....++... ++. +..  .... ....+ +
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~--~a~~~g~~~~~l~-i~~--~~~~-e~~~~-~  132 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLL-CSQ--PDTG-EQALE-I  132 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHTTCCGGGCE-EEC--CSSH-HHHHH-H
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH--HHHHcCCChhhee-eeC--CCCH-HHHHH-H
Confidence            56899999999999999999999998877777788877664321111  111221111 111 111  1122 12222 2


Q ss_pred             HHHH--hCCCCeEEEcCCCCcc---------------ch----HHHHHHHHHHHHHhchhhccccc
Q psy2881         175 NIAQ--KKNTDIVIVDTSGRLS---------------TQ----SHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       175 a~al--~~~~~llllDEP~d~~---------------~~----~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .+.+  ..++++|++|+++-..               .+    ...+..|..+++..+.+++++.|
T Consensus       133 ~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq  198 (356)
T 1u94_A          133 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ  198 (356)
T ss_dssp             HHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence            2222  4689999999997111               11    12233344445666777777766

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.31  E-value=5.5e-06  Score=76.24  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=61.1

Q ss_pred             CCe--EEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881          98 KPF--VIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        98 ~g~--ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      .+.  .+.|.||+|+||||+++.+++.+.+. +..+...++..... ....+..+....+.+.  ......... ..+.+
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~l~~~~--~~~~~~~~~-~~~~l  116 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-FTAIIGEIARSLNIPF--PRRGLSRDE-FLALL  116 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-HHHHHHHHHHHTTCCC--CSSCCCHHH-HHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-HHHHHHHHHHHhCccC--CCCCCCHHH-HHHHH
Confidence            445  89999999999999999999998876 34555444332221 1112222222223221  111112222 22222


Q ss_pred             HHHH--hCCCCeEEEcCCC--CccchHHHHHHHHHHHHH--hchhhcccccee
Q psy2881         175 NIAQ--KKNTDIVIVDTSG--RLSTQSHLMRELKKIKKV--IEKKIFELPYEI  221 (302)
Q Consensus       175 a~al--~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~--~~~~i~~~~hd~  221 (302)
                      ...+  ..+|.+|++||+.  +......+...+..+...  .+..+++++|+.
T Consensus       117 ~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A          117 VEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             HHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             HHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence            2222  2457899999996  333223333333222220  244556666654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.28  E-value=7.2e-07  Score=73.30  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      .+|++++|+|||||||||+++.|++.+    |.+.+.+.+..+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~   44 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP   44 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence            468999999999999999999999976    778887766543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.27  E-value=1.1e-07  Score=83.68  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=36.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH---hHhhhCCCeEE--------EecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLA---NYFKKRKKSVL--------LAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~La---g~~~~~~g~V~--------l~~~d~~  138 (302)
                      .+|++++|+|||||||||+++.|+   |+..++.|.+.        ..|.+..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~   77 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDIS   77 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcc
Confidence            678999999999999999999999   88888888887        6666553

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.26  E-value=2.7e-07  Score=85.20  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh--HhhhCCCeE
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--YFKKRKKSV  130 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--~~~~~~g~V  130 (302)
                      ++++++++++   .++++|++||||||+++.|+|  ++++..|.+
T Consensus        26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            4556667765   799999999999999999999  445544533

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.26  E-value=3.5e-07  Score=77.83  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      ++|++++|+|||||||||+++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.24  E-value=1.5e-06  Score=79.76  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeE-EEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSV-LLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFN  172 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (302)
                      ..+..+.|.||+|+||||+++.+++.+.+.   +..+ .+.+.....  ....+..+....+.+..  ..+..... ..+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~i~~~l~~~~~--~~~~~~~~-~~~  117 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT--PYRVLADLLESLDVKVP--FTGLSIAE-LYR  117 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS--HHHHHHHHTTTTSCCCC--SSSCCHHH-HHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC--HHHHHHHHHHHhCCCCC--CCCCCHHH-HHH
Confidence            456789999999999999999999988764   3333 333322211  11223333333333211  11122222 222


Q ss_pred             HHHHHHh--CCCCeEEEcCCC--CccchHHHHHHHHHHHH---Hhchhhccccceee
Q psy2881         173 AINIAQK--KNTDIVIVDTSG--RLSTQSHLMRELKKIKK---VIEKKIFELPYEIF  222 (302)
Q Consensus       173 ~la~al~--~~~~llllDEP~--d~~~~~~l~~~L~~l~~---~~~~~i~~~~hd~~  222 (302)
                      .+..++.  ..|.+|++||+.  ........+..+.+..+   ..+..+++++|+..
T Consensus       118 ~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~  174 (386)
T 2qby_A          118 RLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK  174 (386)
T ss_dssp             HHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred             HHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence            2322332  238899999996  11111123333333332   22445666777553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.24  E-value=9.3e-07  Score=74.12  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++|+|+||||||||++.+++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999999974

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.23  E-value=5.4e-07  Score=83.84  Aligned_cols=44  Identities=20%  Similarity=0.144  Sum_probs=38.1

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL  132 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l  132 (302)
                      ..+++++++.+++|++++|+|||||||||+++.|++.+   +|++..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            45667889999999999999999999999999999864   677665

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.21  E-value=6e-07  Score=87.52  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEeccc
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAACD  136 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~~d  136 (302)
                      .+.+|++++|+|+|||||||++++|++.+.+.+| ++.+.+.|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            3578999999999999999999999999999886 78644433

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.20  E-value=3.3e-06  Score=81.29  Aligned_cols=47  Identities=23%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      ..++++++.+++|  ++|+||||+|||||++.|++...  .+-+.+.+.+.
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~  100 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  100 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence            3677888888877  89999999999999999999874  56788877654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.19  E-value=8.3e-07  Score=75.21  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +...+|++++|+||||||||||++.|++.++
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3345799999999999999999999999875

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=98.19  E-value=6.9e-06  Score=70.83  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=36.1

Q ss_pred             CCeE-EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh
Q psy2881          98 KPFV-IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA  141 (302)
Q Consensus        98 ~g~i-i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~  141 (302)
                      +|+. +.+.|+.|+||||++..++..+...+.+|.+...|++...
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~   48 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA   48 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence            4554 6678999999999999999988877779999988886433

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.18  E-value=1.4e-05  Score=73.19  Aligned_cols=120  Identities=13%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecC-CCCCHHHHHHHH
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEK-KITDPAAIAFNA  173 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~-~~~~~~~~~~~~  173 (302)
                      -+.+|+++.|.|++|+||||++..+|......++.|.+...+.........  ..+...+++..... ..........-.
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~R--lls~~~~v~~~~l~~g~Ls~~e~~~l~  119 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALR--ALSDLTSINMHDLESGRLDDDQWENLA  119 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHH--HHHHHHCCCHHHHHHTCCCHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHH--HHHHhhCCCHHHHhcCCCCHHHHHHHH
Confidence            367999999999999999999999999887788899998876542221111  11222222221100 011221111111


Q ss_pred             HHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHh-chhhcccc
Q psy2881         174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVI-EKKIFELP  218 (302)
Q Consensus       174 la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~-~~~i~~~~  218 (302)
                      .|...+.++++.+.|+|+-  +-..+...++++.+.. +..++++-
T Consensus       120 ~a~~~l~~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          120 KCFDHLSQKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             HHHHHHHHSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             HHHHHHhcCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            2233445678888888862  2445666777776654 44444443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.16  E-value=5.3e-07  Score=87.93  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=37.0

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +.++++++ +|++++|+||||+||||+++.|++.+.+..+.|.+.+
T Consensus        99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A           99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            34556666 7899999999999999999999999987767766544

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=98.15  E-value=3.4e-05  Score=67.35  Aligned_cols=40  Identities=23%  Similarity=0.254  Sum_probs=34.3

Q ss_pred             CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.++++++ ..|+||||+...||..+...+.+|.+.+.|..
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   42 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            35677764 77999999999999999888889999999975

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.13  E-value=3.2e-07  Score=80.67  Aligned_cols=38  Identities=24%  Similarity=0.160  Sum_probs=34.6

Q ss_pred             ccCCCcceecCC---CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          87 SLEKPLIFKKCK---PFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        87 ~~l~~i~l~~~~---g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++++++||++.+   |++++|+|++||||||+.+.|++.+.
T Consensus        33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            467889999998   99999999999999999999999763

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.12  E-value=1.8e-05  Score=71.69  Aligned_cols=43  Identities=19%  Similarity=0.150  Sum_probs=36.5

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      -+.+|+++.|.|++|+||||++..++......+..|.+.+.+.
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~  106 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM  106 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence            3689999999999999999999999877665667888887664

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=98.11  E-value=4.7e-06  Score=75.58  Aligned_cols=170  Identities=12%  Similarity=0.132  Sum_probs=91.5

Q ss_pred             HHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcc----eecCCCeEEEEEcCCCCCHHHHHH
Q psy2881          42 LKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKSLEKPLI----FKKCKPFVIMIVGVNGVGKTTTIG  117 (302)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~l~~i~----l~~~~g~ii~lvGpnGsGKTTll~  117 (302)
                      ...+++.+-+.++++..++.+.. ...+...+.+....  ...+..-...++    --+++|+++.|.||+|+||||++.
T Consensus        40 ~~~gis~~~a~~~i~~a~~~~~~-~~~~~~~~~~~~~~--~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~  116 (322)
T 2i1q_A           40 DIEGISEKAAAKMIMGARDLCDL-GFKSGIDLLKQRST--VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH  116 (322)
T ss_dssp             TSTTCCHHHHHHHHHHHHHHTTC-SCCCTHHHHHHHTT--CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred             HhhCcCHHHHHHHHHHHHHhhhh-cCCcHHHHHHHhcc--CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence            34799999999999988876532 33444444221000  001111111111    135789999999999999999999


Q ss_pred             HHHhHh--hh----------CC----CeEEEecccC-CChhHHHHHHHhcccCCCC--------eeecCCCCCHHH--HH
Q psy2881         118 KLANYF--KK----------RK----KSVLLAACDT-FRAAAYEQLLILGKYNDVP--------VISEKKITDPAA--IA  170 (302)
Q Consensus       118 ~Lag~~--~~----------~~----g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~--------~~~~~~~~~~~~--~~  170 (302)
                      .++.-.  ++          .+    ++|.+.+.+- ++.   +++..+.+..++.        ++....  ....  ..
T Consensus       117 ~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~---~~l~~~~~~~g~~~~~~~~~l~~~~~~--~~~~~~~~  191 (322)
T 2i1q_A          117 QSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP---ERIMQMAEHAGIDGQTVLDNTFVARAY--NSDMQMLF  191 (322)
T ss_dssp             HHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH---HHHHHHHHHHTCCHHHHHHTEEEEECS--SHHHHHHH
T ss_pred             HHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH---HHHHHHHHHcCCCHHHHhcCEEEEeCC--CHHHHHHH
Confidence            998643  21          22    5777766553 222   2232223333322        111111  2111  11


Q ss_pred             HHHHHHHHh--CCCCeEEEcCCC---C--cc------c----hHHHHHHHHHHHHHhchhhccccc
Q psy2881         171 FNAINIAQK--KNTDIVIVDTSG---R--LS------T----QSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       171 ~~~la~al~--~~~~llllDEP~---d--~~------~----~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .+.+...+.  .++++|++|.-+   .  ..      .    -..++..|..+++..+.+++++.|
T Consensus       192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq  257 (322)
T 2i1q_A          192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ  257 (322)
T ss_dssp             HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence            122222222  578999999986   1  10      1    134555666777777777776665

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.11  E-value=2.6e-06  Score=70.77  Aligned_cols=41  Identities=32%  Similarity=0.406  Sum_probs=35.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      ..+|.++.|+|++||||||+++.|+..+.+.++++.+.+.|
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            45789999999999999999999999999888888766543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.10  E-value=2.9e-06  Score=72.53  Aligned_cols=38  Identities=13%  Similarity=0.080  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .+..+.|.||+|+||||+++.++..+...+..+.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~   88 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL   88 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            46789999999999999999999988876666666554

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.09  E-value=2.8e-06  Score=71.43  Aligned_cols=36  Identities=33%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      ..+.|.||+|+||||+++.++..+...+..+.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~   90 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV   90 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence            678899999999999999999998877777776543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.09  E-value=1e-05  Score=80.64  Aligned_cols=44  Identities=25%  Similarity=0.166  Sum_probs=33.2

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccC
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDT  137 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~  137 (302)
                      ++++.++..++|+|++|+|||||++.|++...+  ..|+| ..+.+.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~   48 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT   48 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence            345678899999999999999999999987764  56777 344433

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.07  E-value=2.1e-06  Score=79.37  Aligned_cols=33  Identities=27%  Similarity=0.169  Sum_probs=30.1

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++++++.+| +++|+|||||||||++..|++
T Consensus        16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            356789999888 999999999999999999997

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.07  E-value=3.8e-05  Score=72.86  Aligned_cols=42  Identities=14%  Similarity=0.009  Sum_probs=35.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEecccC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACDT  137 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d~  137 (302)
                      +.+|+++.|.|++|+||||++..++..... .+..|.+.+...
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~  239 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM  239 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            679999999999999999999999988775 456788877654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.06  E-value=3.7e-06  Score=79.82  Aligned_cols=100  Identities=20%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHH-HHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQL-LILGKYNDVPVISEKKITDPAAIAFNAIN  175 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql-~~~~~~~~~~~~~~~~~~~~~~~~~~~la  175 (302)
                      +..+.|.||+|+|||||++.|++.+...  +..+.+.+...+    ...+ ..+..            ...     ..+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~----~~~~~~~~~~------------~~~-----~~~~  188 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF----LNDLVDSMKE------------GKL-----NEFR  188 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH----HHHHHHHHHT------------TCH-----HHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH----HHHHHHHHHc------------ccH-----HHHH
Confidence            4568899999999999999999988644  455555443211    1111 11100            001     1122


Q ss_pred             HHHhCCCCeEEEcCCC---C-ccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         176 IAQKKNTDIVIVDTSG---R-LSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       176 ~al~~~~~llllDEP~---d-~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                      ..+..++++|++||+.   + ...+..++..+..+.+ .+..+++++|+
T Consensus       189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~  236 (440)
T 2z4s_A          189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDR  236 (440)
T ss_dssp             HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred             HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence            2232389999999996   2 1455667677666643 35667777775

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.05  E-value=8.3e-06  Score=70.55  Aligned_cols=46  Identities=22%  Similarity=0.170  Sum_probs=34.0

Q ss_pred             CCCcceecC---CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          89 EKPLIFKKC---KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        89 l~~i~l~~~---~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +.+.++.+.   +|.+++|.||+||||||+++.|+..+.+ ++.+.....
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~   61 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTRE   61 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECT
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecC
Confidence            344555554   8999999999999999999999999988 778865543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.05  E-value=1.4e-07  Score=86.30  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh----hhCCCeEE
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF----KKRKKSVL  131 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~----~~~~g~V~  131 (302)
                      .+.++|+||||+|||||++.|++.+    .+.+|.+.
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~   87 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL   87 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence            3689999999999999999999998    44445443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.05  E-value=2.1e-05  Score=68.62  Aligned_cols=95  Identities=21%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHhh-ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh
Q psy2881          71 EQVRNVLHNLLVNLLK-SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL  149 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~-~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~  149 (302)
                      +.+++.+.+.+...-. ..++++++..++|  +.|+||+|+||||+++.|++.+..  --+.+.+.+....         
T Consensus        18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~--~~~~i~~~~~~~~---------   84 (257)
T 1lv7_A           18 DEAKEEVAELVEYLREPSRFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDFVEM---------   84 (257)
T ss_dssp             HHHHHHTHHHHHHHHCGGGC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSSTTS---------
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC--CEEEEeHHHHHHH---------
Confidence            4444545443332111 2344444544444  889999999999999999998642  1244444433210         


Q ss_pred             cccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         150 GKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                        ..         +.. .......+..+....|.++++||.
T Consensus        85 --~~---------~~~-~~~~~~~~~~a~~~~~~il~iDei  113 (257)
T 1lv7_A           85 --FV---------GVG-ASRVRDMFEQAKKAAPCIIFIDEI  113 (257)
T ss_dssp             --CC---------CCC-HHHHHHHHHHHHTTCSEEEEETTH
T ss_pred             --hh---------hhh-HHHHHHHHHHHHHcCCeeehhhhh
Confidence              00         011 122233444555566889999997

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.05  E-value=9.9e-06  Score=69.89  Aligned_cols=116  Identities=12%  Similarity=0.059  Sum_probs=68.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      .+|.++.+.||.|+||||++..++..+...+.+|.+..  .|. + +.    .....+.++........ ... ...+.+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~----~~i~srlG~~~~~~~~~-~~~-~i~~~i   81 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI----RNIQSRTGTSLPSVEVE-SAP-EILNYI   81 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC----SSCCCCCCCSSCCEEES-STH-HHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH----HHHHHhcCCCccccccC-CHH-HHHHHH
Confidence            46899999999999999999888888877777888773  221 2 11    12234444332111111 111 121211


Q ss_pred             HHHH-hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         175 NIAQ-KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       175 a~al-~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .... ..++++|++||.-....  .+.+.+..+.+. +..++++-|+..+
T Consensus        82 ~~~~~~~~~dvViIDEaQ~l~~--~~ve~l~~L~~~-gi~Vil~Gl~~df  128 (223)
T 2b8t_A           82 MSNSFNDETKVIGIDEVQFFDD--RICEVANILAEN-GFVVIISGLDKNF  128 (223)
T ss_dssp             HSTTSCTTCCEEEECSGGGSCT--HHHHHHHHHHHT-TCEEEEECCSBCT
T ss_pred             HHHhhCCCCCEEEEecCccCcH--HHHHHHHHHHhC-CCeEEEEeccccc
Confidence            1111 13599999999963222  255666776654 7777777787665

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=98.04  E-value=3.7e-05  Score=66.30  Aligned_cols=126  Identities=15%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-----CeEEEecccCCChhHHHHHHHhcccCCCC----ee------ecC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-----KSVLLAACDTFRAAAYEQLLILGKYNDVP----VI------SEK  161 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-----g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~------~~~  161 (302)
                      ..|+.++++|||||||||++..+........     ..+.+.  .+.+..+.+....+....+..    .-      ...
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~--~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~  151 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVT--QPRRISAVSVAERVAFERGEEPGKSCGYSVRFESIL  151 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEE--ESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEEC
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEe--ccchHHHHHHHHHHHHHhccccCceEEEeechhhcc
Confidence            4688999999999999998877654332211     134332  334444433333333222211    10      000


Q ss_pred             --CC-----CCHHHHHHHHHHHHHhCCCCeEEEcCCCCc-cchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH
Q psy2881         162 --KI-----TDPAAIAFNAINIAQKKNTDIVIVDTSGRL-STQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT  233 (302)
Q Consensus       162 --~~-----~~~~~~~~~~la~al~~~~~llllDEP~d~-~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~  233 (302)
                        ..     ..+. ...+.+ .....+.++|++||+-.. .........++.+....       ++-..++++|+...+.
T Consensus       152 ~~~~~~Ivv~Tpg-~l~~~l-~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-------~~~~~il~SAT~~~~~  222 (235)
T 3llm_A          152 PRPHASIMFCTVG-VLLRKL-EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-------PEVRIVLMSATIDTSM  222 (235)
T ss_dssp             CCSSSEEEEEEHH-HHHHHH-HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------TTSEEEEEECSSCCHH
T ss_pred             CCCCCeEEEECHH-HHHHHH-HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-------CCCeEEEEecCCCHHH
Confidence              00     0122 222222 224688999999999632 33333335555554431       2333566777765543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.03  E-value=2.3e-05  Score=72.54  Aligned_cols=42  Identities=17%  Similarity=0.093  Sum_probs=36.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +++|+++.|.||+|+||||++..++......++.|.+.+.+.
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            468999999999999999999999887777778898887764

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=98.03  E-value=5.3e-05  Score=68.11  Aligned_cols=148  Identities=19%  Similarity=0.241  Sum_probs=83.1

Q ss_pred             CCCeEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH---------Hhc---------c---cCC
Q psy2881          97 CKPFVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL---------ILG---------K---YND  154 (302)
Q Consensus        97 ~~g~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~---------~~~---------~---~~~  154 (302)
                      .++.++++.|+ .|+||||+...||..+...+.+|.+.+.|..+......+.         .+.         .   ..+
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~  181 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG  181 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence            35679999997 5999999999999999888889999999985433221111         000         0   012


Q ss_pred             CCeeecCC-CCCHHH-----HHHHHHHHHHhCCCCeEEEcCCCCcc-chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         155 VPVISEKK-ITDPAA-----IAFNAINIAQKKNTDIVIVDTSGRLS-TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       155 ~~~~~~~~-~~~~~~-----~~~~~la~al~~~~~llllDEP~d~~-~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +.++.... ...+.+     ...+.+. .+..++|+||+|+|+... ....+      +..        ....+.+|..+
T Consensus       182 l~vl~~g~~~~~~~ell~~~~l~~ll~-~l~~~yD~VIIDtpp~~~~~d~~~------l~~--------~ad~vilV~~~  246 (299)
T 3cio_A          182 FDVITRGQVPPNPSELLMRDRMRQLLE-WANDHYDLVIVDTPPMLAVSDAAV------VGR--------SVGTSLLVARF  246 (299)
T ss_dssp             EEEECCCSCCSCHHHHHTSHHHHHHHH-HHHHHCSEEEEECCCTTTCTHHHH------HGG--------GCSEEEEEEET
T ss_pred             EEEEECCCCCCCHHHHhCHHHHHHHHH-HHHhCCCEEEEcCCCCchhHHHHH------HHH--------HCCEEEEEEcC
Confidence            22332211 122221     1223333 344679999999997322 22111      111        12334455555


Q ss_pred             CCCh-hHHHHH-HHHHh-hcCCCeEEEecCCCCCc
Q psy2881         228 NTGQ-NTLSQI-KEFSK-ILRITGLIITKLDGTTK  259 (302)
Q Consensus       228 ~~g~-~~~~~~-~~f~~-~~~~~~~i~tk~d~~~~  259 (302)
                      +... ..+... +.+.. ..++-++|+|+.+....
T Consensus       247 ~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~  281 (299)
T 3cio_A          247 GLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS  281 (299)
T ss_dssp             TTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred             CCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence            4332 344333 34432 34567899999997644

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=98.02  E-value=3.5e-05  Score=66.34  Aligned_cols=41  Identities=17%  Similarity=0.099  Sum_probs=36.4

Q ss_pred             CCeEEEEEc-CCCCCHHHHHHHHHhHhhhC-CCeEEEecccCC
Q psy2881          98 KPFVIMIVG-VNGVGKTTTIGKLANYFKKR-KKSVLLAACDTF  138 (302)
Q Consensus        98 ~g~ii~lvG-pnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~~  138 (302)
                      ++.++++.+ ..|+||||+...||..+... +.+|.+.+.|.+
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            568899986 56899999999999999887 889999999976

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.02  E-value=8.3e-06  Score=72.97  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +...+.|+||+|+||||+++.|++.+.+.++.+...++..
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~   85 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   85 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence            4468999999999999999999999988777766665543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.01  E-value=7.7e-06  Score=78.82  Aligned_cols=49  Identities=16%  Similarity=0.309  Sum_probs=39.7

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHh--HhhhCCCeEEEecccCCC
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN--YFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag--~~~~~~g~V~l~~~d~~~  139 (302)
                      .+.+++.++..++|.|++||||||+++.|..  ++..+.+.|.+...|...
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            4677788888899999999999999999876  344566888888888654

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=98.01  E-value=4.5e-05  Score=67.62  Aligned_cols=44  Identities=23%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             CCCeEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881          97 CKPFVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA  140 (302)
Q Consensus        97 ~~g~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~  140 (302)
                      .++.++++.|+ .|+||||+...||..+...+.+|.+.+.|..+.
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~  124 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP  124 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence            35679999986 689999999999999998888999999998653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.01  E-value=2.5e-06  Score=69.73  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .|.+++|+|||||||||+++.|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.00  E-value=6.2e-06  Score=74.62  Aligned_cols=38  Identities=32%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .+..+.|.||+|+||||+++.++..+.+.+..+.+.+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~   73 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   73 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence            34568899999999999999999998876666666543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=98.00  E-value=2.5e-05  Score=67.28  Aligned_cols=125  Identities=9%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhH-hhhCCCeEEEecccCCChhHHHHHHHhcc-------cCCCCee---------
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANY-FKKRKKSVLLAACDTFRAAAYEQLLILGK-------YNDVPVI---------  158 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~-~~~~~g~V~l~~~d~~~~~~~~ql~~~~~-------~~~~~~~---------  158 (302)
                      +++|+++.|.|++|+||||++-.++.- ....++.|.+...+.......+.+..+..       ...+.+.         
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  106 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL  106 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhc
Confidence            578999999999999999999877654 33446678887665432111111111100       0000000         


Q ss_pred             ------ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC-------CccchHHHHHHHHHHHHHhchhhccccce
Q psy2881         159 ------SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG-------RLSTQSHLMRELKKIKKVIEKKIFELPYE  220 (302)
Q Consensus       159 ------~~~~~~~~~~~~~~~la~al~~~~~llllDEP~-------d~~~~~~l~~~L~~l~~~~~~~i~~~~hd  220 (302)
                            ......................+++++++|.-.       +......++..|..+++..+.++++++|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~  181 (251)
T 2zts_A          107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA  181 (251)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred             ccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence                  000011111222222223345789999999653       45556678888888888888888777763

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.99  E-value=7.1e-05  Score=65.58  Aligned_cols=43  Identities=37%  Similarity=0.465  Sum_probs=36.6

Q ss_pred             cCCCeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          96 KCKPFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        96 ~~~g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      -.++.++++.+ ..|+||||+...||..+. .+.+|.+.+.|.+.
T Consensus        24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~   67 (267)
T 3k9g_A           24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA   67 (267)
T ss_dssp             --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred             CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            35678999975 668999999999999999 88899999999875

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.98  E-value=8.7e-05  Score=64.98  Aligned_cols=40  Identities=28%  Similarity=0.479  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      .++++.|..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~   41 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence            4677889999999999999999999888899999999764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.97  E-value=6.6e-06  Score=67.85  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEec
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLAA  134 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~~  134 (302)
                      .+|.+++|+|++||||||+++.|++.+.+.+- .+.+.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            46899999999999999999999999887432 344443

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.96  E-value=3.5e-06  Score=68.09  Aligned_cols=48  Identities=8%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             HHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceee
Q psy2881         174 INIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIF  222 (302)
Q Consensus       174 la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~  222 (302)
                      +|++++.+|+++|+|||+   |+.....+.+.+.++.+. +.+++++|||..
T Consensus        74 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~  124 (148)
T 1f2t_B           74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE  124 (148)
T ss_dssp             HHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG
T ss_pred             HHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH
Confidence            568999999999999997   888888899999887653 778999999873

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.96  E-value=3.4e-06  Score=78.81  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHh------------HhhhCCCeEEEec
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLAN------------YFKKRKKSVLLAA  134 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag------------~~~~~~g~V~l~~  134 (302)
                      .+.+|..++|+|+||||||||++.|+|            ...|+.|.|.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            457899999999999999999999999            4457778888765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.96  E-value=5.7e-06  Score=69.85  Aligned_cols=40  Identities=30%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      -++.+|.+++|+|++||||||+++.|++.+.   + +.+...|.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~-~~~i~~D~   55 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---N-CSVISQDD   55 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST---T-EEEEEGGG
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---C-cEEEeCCc
Confidence            3467899999999999999999999999763   2 44555553

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.93  E-value=5e-06  Score=78.54  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK  127 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~  127 (302)
                      +++.+|++++|+|||||||||++..|++++.+.+
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            5566789999999999999999999999987654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.93  E-value=5.2e-06  Score=70.52  Aligned_cols=39  Identities=18%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC--eEEEe
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKK--SVLLA  133 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g--~V~l~  133 (302)
                      .+.+|.+++|+|++||||||+++.|++.+.|..|  .+.+.
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~   61 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD   61 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence            3467999999999999999999999999986666  55554

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=97.92  E-value=0.00011  Score=65.58  Aligned_cols=148  Identities=20%  Similarity=0.278  Sum_probs=84.3

Q ss_pred             CCCeEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH---------hccc------------CC
Q psy2881          97 CKPFVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI---------LGKY------------ND  154 (302)
Q Consensus        97 ~~g~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~---------~~~~------------~~  154 (302)
                      .++.++++.|+ .|+||||+...||..+...+.+|.+.+.|..+......+..         +...            .+
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~  169 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK  169 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence            35689999986 58999999999999999888899999999875433222110         0000            11


Q ss_pred             CCeeecCC-CCCHHH-----HHHHHHHHHHhCCCCeEEEcCCCCcc-chHHHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         155 VPVISEKK-ITDPAA-----IAFNAINIAQKKNTDIVIVDTSGRLS-TQSHLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       155 ~~~~~~~~-~~~~~~-----~~~~~la~al~~~~~llllDEP~d~~-~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +.++.... ...+.+     ...+.+ ..+..++|+||+|+|.... .....      +.        -...-+.+|..+
T Consensus       170 l~vl~~g~~~~~~~ell~~~~l~~ll-~~l~~~yD~VIIDtpp~~~~~da~~------l~--------~~aD~vllVv~~  234 (286)
T 3la6_A          170 FDLIPRGQVPPNPSELLMSERFAELV-NWASKNYDLVLIDTPPILAVTDAAI------VG--------RHVGTTLMVARY  234 (286)
T ss_dssp             EEEECCCSCCSCHHHHHTSHHHHHHH-HHHHHHCSEEEEECCCTTTCTHHHH------HT--------TTCSEEEEEEET
T ss_pred             EEEEeCCCCCCCHHHHhchHHHHHHH-HHHHhCCCEEEEcCCCCcchHHHHH------HH--------HHCCeEEEEEeC
Confidence            22222211 112222     122223 3345679999999997322 21111      11        112345566666


Q ss_pred             CCCh-hHHHHH-HHHHh-hcCCCeEEEecCCCCCc
Q psy2881         228 NTGQ-NTLSQI-KEFSK-ILRITGLIITKLDGTTK  259 (302)
Q Consensus       228 ~~g~-~~~~~~-~~f~~-~~~~~~~i~tk~d~~~~  259 (302)
                      +... ..+... +.+.. ..++-++|+|+++....
T Consensus       235 ~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~  269 (286)
T 3la6_A          235 AVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS  269 (286)
T ss_dssp             TTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence            5433 444443 34432 24567999999987543

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=97.91  E-value=8.3e-05  Score=63.70  Aligned_cols=40  Identities=33%  Similarity=0.361  Sum_probs=34.7

Q ss_pred             CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.++++.+ ..|+||||+...||..+...+.+|.+.+.|..
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            46788876 56999999999999999888889999999975

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.91  E-value=5.3e-06  Score=84.13  Aligned_cols=110  Identities=21%  Similarity=0.196  Sum_probs=63.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC---CCeEEEecccCCChhHHHHHHHhcccCCCCe----e------ecCCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR---KKSVLLAACDTFRAAAYEQLLILGKYNDVPV----I------SEKKI  163 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~---~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~----~------~~~~~  163 (302)
                      ..|+.+.++|||||||||++..++....+.   ++.|.+. . +.+..+.++...+.+..+..+    -      .....
T Consensus       107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl-~-P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~  184 (773)
T 2xau_A          107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT-Q-PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN  184 (773)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE-E-SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT
T ss_pred             hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec-C-chHHHHHHHHHHHHHHhCCchhheecceeccccccCC
Confidence            457899999999999999988886655433   3345543 2 334444444333433333211    0      00000


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCeEEEcCCC-CccchHHHHHHHHHHHH
Q psy2881         164 ------TDPAAIAFNAINIAQKKNTDIVIVDTSG-RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       164 ------~~~~~~~~~~la~al~~~~~llllDEP~-d~~~~~~l~~~L~~l~~  208 (302)
                            ..+.......++..+..++++||+|||. +.-....++..++.+..
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~  236 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK  236 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHH
Confidence                  0133334444555678899999999997 34444445556666544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.90  E-value=1.9e-05  Score=70.88  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=47.3

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNA  173 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      +.+.++..+.|.||+|+||||+++.|++.+.  .+-+.+.+.+.        ...|.   +      .. ..   .....
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l--------~~~~~---g------~~-~~---~~~~~  100 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL--------LTMWF---G------ES-EA---NVREI  100 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH--------HHHHH---T------TC-TT---HHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH--------Hhhhc---C------ch-HH---HHHHH
Confidence            4456788899999999999999999999763  23344433221        11111   0      00 01   12234


Q ss_pred             HHHHHhCCCCeEEEcCCC
Q psy2881         174 INIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       174 la~al~~~~~llllDEP~  191 (302)
                      +..+....|.+|++||..
T Consensus       101 f~~a~~~~p~il~iDEid  118 (301)
T 3cf0_A          101 FDKARQAAPCVLFFDELD  118 (301)
T ss_dssp             HHHHHHTCSEEEEECSTT
T ss_pred             HHHHHhcCCeEEEEEChH
Confidence            555666789999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.89  E-value=8.8e-06  Score=71.90  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      -.++|+|++|||||||++.|+|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998753

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=97.88  E-value=2.9e-05  Score=69.25  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=36.8

Q ss_pred             CeEEEEEc---CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881          99 PFVIMIVG---VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA  140 (302)
Q Consensus        99 g~ii~lvG---pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~  140 (302)
                      +.+++|.+   ..|+||||+...||..+...+.+|.+.+.|++..
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~   78 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT   78 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            56788886   8899999999999999988888999999998753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.88  E-value=6.3e-05  Score=64.85  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      -.++|+|++|||||||++.|+|...+.
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~~   56 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVFH   56 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence            368999999999999999999865433

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=97.88  E-value=0.00034  Score=61.17  Aligned_cols=43  Identities=26%  Similarity=0.328  Sum_probs=36.8

Q ss_pred             CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh
Q psy2881          99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA  141 (302)
Q Consensus        99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~  141 (302)
                      +.++++.+ ..|+||||+...||..+...+.+|.+.+.|.+...
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~   61 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPS   61 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCH
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            56888875 66899999999999999888889999999987643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.88  E-value=2.6e-05  Score=66.05  Aligned_cols=152  Identities=14%  Similarity=0.156  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCC----CCCHHHHHHHHHH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKK----ITDPAAIAFNAIN  175 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~----~~~~~~~~~~~la  175 (302)
                      .+++|+|+.||||||+++.|++..... .++.+.+.|+........+.    ..+.++.....    .... ....+.+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~  104 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVR----RFGIKAEAISTGKECHLDA-HMIYHRLK  104 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHH----TTTCEEEECCCTTCSSCCH-HHHHTTGG
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHH----hCCCcEEEecCCceeeccc-HHHHHHHH
Confidence            579999999999999999999886544 67877777775422222222    11222222111    1111 11112222


Q ss_pred             HHHhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH-HHHHHhhcCCCeEEEe
Q psy2881         176 IAQKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ-IKEFSKILRITGLIIT  252 (302)
Q Consensus       176 ~al~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~-~~~f~~~~~~~~~i~t  252 (302)
                        ...+++++++|+||  +.+...                 -...+...+|++++.+...... ...+  . .+..+++|
T Consensus       105 --~~~~~d~iiidt~G~~~~~~~~-----------------~~~~~~~i~vvd~~~~~~~~~~~~~~~--~-~~~iiv~N  162 (221)
T 2wsm_A          105 --KFSDCDLLLIENVGNLICPVDF-----------------DLGENYRVVMVSVTEGDDVVEKHPEIF--R-VADLIVIN  162 (221)
T ss_dssp             --GGTTCSEEEEEEEEBSSGGGGC-----------------CCSCSEEEEEEEGGGCTTHHHHCHHHH--H-TCSEEEEE
T ss_pred             --hcCCCCEEEEeCCCCCCCCchh-----------------ccccCcEEEEEeCCCcchhhhhhhhhh--h-cCCEEEEe
Confidence              34679999999998  322110                 0123445666776655422211 1222  1 23578999


Q ss_pred             cCCCCC----chhHHHHhhhHhC--CceEEEec
Q psy2881         253 KLDGTT----KGGILAAIAKKYS--IPLYFIGI  279 (302)
Q Consensus       253 k~d~~~----~~g~~~~~~~~~~--~pv~~~~~  279 (302)
                      |.|...    ....+...+...+  .|+.+++.
T Consensus       163 K~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa  195 (221)
T 2wsm_A          163 KVALAEAVGADVEKMKADAKLINPRAKIIEMDL  195 (221)
T ss_dssp             CGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBT
T ss_pred             cccCCcchhhHHHHHHHHHHHhCCCCeEEEeec
Confidence            999632    2334444444443  56655543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.86  E-value=1.5e-05  Score=71.39  Aligned_cols=42  Identities=31%  Similarity=0.401  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC---CeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRK---KSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~---g~V~l~~~d~~  138 (302)
                      .++.+++|+||+||||||+++.|++++.+.+   ..+.+...|.+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            5689999999999999999999999998642   23445355543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.86  E-value=6.2e-05  Score=66.47  Aligned_cols=71  Identities=20%  Similarity=0.317  Sum_probs=44.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN  175 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la  175 (302)
                      .++.-+.|.||+|+||||+++.++..+.   ..+. +...+....                     ............+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~~~~---------------------~~~~~~~~~~~~~~  104 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN---ATFIRVVGSELVKK---------------------FIGEGASLVKDIFK  104 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT---CEEEEEEGGGGCCC---------------------STTHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehHHHHHh---------------------ccchHHHHHHHHHH
Confidence            4566799999999999999999998753   2232 222221100                     00112223334455


Q ss_pred             HHHhCCCCeEEEcCCC
Q psy2881         176 IAQKKNTDIVIVDTSG  191 (302)
Q Consensus       176 ~al~~~~~llllDEP~  191 (302)
                      .+....|.+|++||..
T Consensus       105 ~~~~~~~~vl~iDEid  120 (285)
T 3h4m_A          105 LAKEKAPSIIFIDEID  120 (285)
T ss_dssp             HHHHTCSEEEEEETTH
T ss_pred             HHHHcCCeEEEEECHH
Confidence            6667789999999983

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.84  E-value=3.2e-05  Score=65.06  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccCCCCe--eecCCCCCHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYNDVPV--ISEKKITDPAAIAFN  172 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~~~~~--~~~~~~~~~~~~~~~  172 (302)
                      .+|.++.+.||-||||||.+-.++..+...+.+|.+..  .|. |.+.    .....+.++..  ...... .      +
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~~~~-~------~   73 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAIKNS-R------E   73 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEESSS-T------H
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEeeCCH-H------H
Confidence            56899999999999999999999988887788888874  232 2110    11222333321  111111 1      1


Q ss_pred             HHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         173 AINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       173 ~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .+. .+..++++|++||.....  ...++.++.+.+. +..+++..++..+
T Consensus        74 i~~-~~~~~~dvViIDEaqfl~--~~~v~~l~~l~~~-~~~Vi~~Gl~~df  120 (191)
T 1xx6_A           74 ILK-YFEEDTEVIAIDEVQFFD--DEIVEIVNKIAES-GRRVICAGLDMDF  120 (191)
T ss_dssp             HHH-HCCTTCSEEEECSGGGSC--THHHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred             HHH-HHhccCCEEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEeccccc
Confidence            121 112358999999986322  1236677777654 5566665665543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.84  E-value=3.5e-06  Score=71.96  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh---hhCCCeEEE
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF---KKRKKSVLL  132 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~---~~~~g~V~l  132 (302)
                      +.+++|+||+||||||+++.|++.+   .++.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            4689999999999999999999987   455555554

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.82  E-value=1.3e-05  Score=64.67  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=25.6

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +..+++.+ .+.+|+|||||||||++..|...+
T Consensus        16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            44555554 599999999999999999998654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.81  E-value=5.2e-05  Score=67.41  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=45.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-EEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      ++..+.|.||+|+||||+++.+++.+.   ... .+...+...                     .............+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~---------------------~~~~~~~~~~~~~~~~  108 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS---ATFLNISAASLTS---------------------KYVGDGEKLVRALFAV  108 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEESTTTSS---------------------SSCSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEeeHHHHhh---------------------cccchHHHHHHHHHHH
Confidence            467889999999999999999998763   222 222222110                     0001223334445666


Q ss_pred             HHhCCCCeEEEcCCC
Q psy2881         177 AQKKNTDIVIVDTSG  191 (302)
Q Consensus       177 al~~~~~llllDEP~  191 (302)
                      +...+|.+|++||+.
T Consensus       109 ~~~~~~~vl~iDEid  123 (297)
T 3b9p_A          109 ARHMQPSIIFIDEVD  123 (297)
T ss_dssp             HHHTCSEEEEEETGG
T ss_pred             HHHcCCcEEEeccHH
Confidence            677889999999994

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=97.79  E-value=0.00013  Score=62.67  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=33.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++.|..|+||||+...||..+...+.+|.+.+.|.+
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5668999999999999999999988899999999985

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.79  E-value=0.00049  Score=58.21  Aligned_cols=144  Identities=21%  Similarity=0.207  Sum_probs=80.4

Q ss_pred             EEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881         101 VIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK  179 (302)
Q Consensus       101 ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~  179 (302)
                      ++++. +..|+||||+...||..+...+ +|.+.+.|.+.... ..+.. .+ ....++..    +       .+. .+.
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~-~~-l~~~vi~~----~-------~l~-~l~   65 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR-GS-LPFKVVDE----R-------QAA-KYA   65 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH-SC-CSSEEEEG----G-------GHH-HHG
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC-CC-CCcceeCH----H-------HHH-Hhh
Confidence            56666 5779999999999999998777 99999999875322 22222 11 11111211    1       122 245


Q ss_pred             CCCCeEEEcCCCC-ccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh-hHHHHH-HHHHh--hcCCCeEEEecC
Q psy2881         180 KNTDIVIVDTSGR-LSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ-NTLSQI-KEFSK--ILRITGLIITKL  254 (302)
Q Consensus       180 ~~~~llllDEP~d-~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~-~~~~~~-~~f~~--~~~~~~~i~tk~  254 (302)
                      .++|++|+|+|+. ....  ....+    .        .++.+.++...+... ..+... +.+..  ..+ -++|+|+.
T Consensus        66 ~~yD~viiD~p~~~~~~~--~~~~l----~--------~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~  130 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDED--LEALA----D--------GCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTII  130 (209)
T ss_dssp             GGCSEEEEEEECCCSSSH--HHHHH----H--------TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSB
T ss_pred             hcCCEEEEeCCCCcCcHH--HHHHH----H--------HCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEec
Confidence            7899999999975 3221  11111    1        123333444433211 222221 22322  123 36899999


Q ss_pred             CCCC-c-hhHHHHhhhHhCCceE
Q psy2881         255 DGTT-K-GGILAAIAKKYSIPLY  275 (302)
Q Consensus       255 d~~~-~-~g~~~~~~~~~~~pv~  275 (302)
                      +... . ...+.+.+.+++.|+.
T Consensus       131 ~~~~~~~~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          131 PPYPSKDGDEARQLLTTAGLPLF  153 (209)
T ss_dssp             CCTTSCHHHHHHHHHHHTTCCBC
T ss_pred             CCccchHHHHHHHHHHHcCCchh
Confidence            9864 3 4456666666787754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.78  E-value=9.3e-05  Score=61.00  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .-.++++|+.||||||+++.+++.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.78  E-value=2.4e-05  Score=68.48  Aligned_cols=62  Identities=24%  Similarity=0.375  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          69 NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        69 ~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++++...+...+...+.    +.. ...+|.++.|+||+||||||+.+.|+..+.  .+.+.+.+ |..
T Consensus         7 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~-D~~   68 (253)
T 2p5t_B            7 TDSEFKHALARNLRSLTR----GKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG-DSF   68 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHT----TCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG-GGG
T ss_pred             CHHHHHHHHHHHHHHHHc----cCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec-HHH
Confidence            344555545544333332    222 456789999999999999999999998764  24455544 443

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.76  E-value=0.00023  Score=68.37  Aligned_cols=42  Identities=24%  Similarity=0.150  Sum_probs=35.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CCeEEEecccC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KKSVLLAACDT  137 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g~V~l~~~d~  137 (302)
                      +.+|+++.|.|++|+||||++..++...... +..|.+.+.+.
T Consensus       239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~  281 (503)
T 1q57_A          239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE  281 (503)
T ss_dssp             CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred             cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence            6789999999999999999999998877654 66888887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.76  E-value=6.1e-05  Score=68.00  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhh-hCCCeEEEecc
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFK-KRKKSVLLAAC  135 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~-~~~g~V~l~~~  135 (302)
                      +..+.|.||+|+|||+|+..|+..+. ..+.+|.+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF  189 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence            56788999999999999999999887 77777776543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.75  E-value=0.00024  Score=61.54  Aligned_cols=72  Identities=19%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      ..+.-+.|.||+|+||||+++.++..+..  --+.+...+...            .         ............+..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~~~~~~~~~------------~---------~~~~~~~~~~~~~~~   93 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQV--PFLAMAGAEFVE------------V---------IGGLGAARVRSLFKE   93 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTC--CEEEEETTTTSS------------S---------STTHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHh------------h---------ccChhHHHHHHHHHH
Confidence            44556889999999999999999987631  123333322210            0         001112223334555


Q ss_pred             HHhCCCCeEEEcCCC
Q psy2881         177 AQKKNTDIVIVDTSG  191 (302)
Q Consensus       177 al~~~~~llllDEP~  191 (302)
                      +....|.+|++||..
T Consensus        94 a~~~~~~vl~iDeid  108 (262)
T 2qz4_A           94 ARARAPCIVYIDEID  108 (262)
T ss_dssp             HHHTCSEEEEEECC-
T ss_pred             HHhcCCeEEEEeCcc
Confidence            566779999999995

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.74  E-value=2.8e-05  Score=64.42  Aligned_cols=37  Identities=24%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .+++|+|++||||||+++.|++.+.+.+.+|.....+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~   43 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   43 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence            5899999999999999999999988776666555443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.73  E-value=0.0001  Score=67.36  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      ..+..+.|.||+|+||||+++.++..+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45668899999999999999999988754

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=97.73  E-value=0.0016  Score=55.08  Aligned_cols=35  Identities=20%  Similarity=0.066  Sum_probs=29.9

Q ss_pred             eEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         100 FVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       100 ~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .++++.|. .|+||||+...||..+...+.+|.+.+
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d   37 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            46788885 699999999999999988888998864

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.73  E-value=0.00057  Score=64.78  Aligned_cols=43  Identities=19%  Similarity=0.118  Sum_probs=37.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.+|+++.|.|++|+||||++..++......+..|.+...+..
T Consensus       194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms  236 (444)
T 3bgw_A          194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  236 (444)
T ss_dssp             BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            6799999999999999999999998877666778998876654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.72  E-value=3.5e-05  Score=63.55  Aligned_cols=38  Identities=24%  Similarity=0.115  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      .+++|+|++||||||++..|+..+...+-+|.+...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~   42 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   42 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence            48999999999999999999999988777787766554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.72  E-value=6.8e-06  Score=81.07  Aligned_cols=47  Identities=13%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCC-CeEEEeccc
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK-KSVLLAACD  136 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~-g~V~l~~~d  136 (302)
                      +.+++.+..|+.++|+||||+||||+++.|++++.+.. |.+.+.+..
T Consensus        51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~   98 (604)
T 3k1j_A           51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP   98 (604)
T ss_dssp             HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred             hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence            34556667889999999999999999999999998776 666665544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.70  E-value=8.7e-05  Score=66.29  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          69 NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        69 ~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++++...+.+.+...+...     .....|.++.|.||+||||||+.+.|+..+.  .+.+.+. .|.+
T Consensus         8 s~~~~~~~~~~~~~~~l~~~-----~~~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is-~D~~   69 (287)
T 1gvn_B            8 TDKQFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID-NDTF   69 (287)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC-THHH
T ss_pred             CHHHHHHHHHHHHHHHhccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe-chHh
Confidence            55777777777777776532     2235688999999999999999999987653  3445544 4544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.69  E-value=9.6e-05  Score=66.87  Aligned_cols=40  Identities=8%  Similarity=0.106  Sum_probs=30.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEeccc
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACD  136 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d  136 (302)
                      +.+| ++.|.||+|+|||||+-.++.-....  ++.+.+.+..
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E   67 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE   67 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            4678 89999999999999977766655443  6778776654

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=97.68  E-value=0.00086  Score=59.48  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=34.9

Q ss_pred             CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.++++.+ ..|+||||+...||..+...+.+|.+.+.|..
T Consensus         4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~   44 (286)
T 2xj4_A            4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLR   44 (286)
T ss_dssp             CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            45788875 67999999999999999988889999999983

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.67  E-value=4.6e-05  Score=63.93  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.+++|+|++||||||+++.|+..+    |.+.+.+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~   53 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH   53 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence            5689999999999999999999887    44555554443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.67  E-value=4.1e-05  Score=67.30  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++|+|++|||||||++.|+|.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.66  E-value=2.5e-05  Score=64.85  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=26.3

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++|++..+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            56788888999999999999999999999886

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.65  E-value=0.00031  Score=63.26  Aligned_cols=25  Identities=36%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +..+++|+|+.|||||||++.|.|.
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3468999999999999999999863

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.63  E-value=0.00011  Score=64.89  Aligned_cols=21  Identities=43%  Similarity=0.687  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|++|+|||||++.|.+
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999865

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=97.62  E-value=0.00069  Score=62.60  Aligned_cols=68  Identities=13%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          68 FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        68 ~~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .+.+.+.+.+...+.+..... ......-.++.++++.| ..|+||||+...||..+...+.+|.+.+.|
T Consensus       113 q~~~~i~~ei~~~~~e~~~~~-~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          113 QRVDVIFKQILGVYSDMAANV-ATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHT-CCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCHHHHHHHHHHHHhhccccc-ccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            456666666666655544322 12334446789999996 889999999999999998777799999988

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.62  E-value=0.0001  Score=66.89  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +.+|.++.|.||.|+||||++..++..   .++++.+...
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~  156 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV  156 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence            456788899999999999999999875   3344444433

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.61  E-value=0.00011  Score=65.91  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++|+|+.|||||||++.|+|.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            68899999999999999999864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.61  E-value=0.00028  Score=64.85  Aligned_cols=94  Identities=15%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHHH
Q psy2881          70 TEQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQL  146 (302)
Q Consensus        70 ~~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~ql  146 (302)
                      .+.+++.+.+.+..-+..  .+...   ..++.-+.|.||.|+||||+++.++...   +..+. +...+....      
T Consensus        89 ~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~------  156 (357)
T 3d8b_A           89 VEFAKATIKEIVVWPMLRPDIFTGL---RGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK------  156 (357)
T ss_dssp             CHHHHHHHHHHTHHHHHCTTTSCGG---GSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS------
T ss_pred             hHHHHHHHHHHHHHHhhChHhHhhc---cCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc------
Confidence            355556666555443221  11111   2445678999999999999999999865   23333 332222110      


Q ss_pred             HHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         147 LILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                     ............+..+....|.+|++||.
T Consensus       157 ---------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEi  185 (357)
T 3d8b_A          157 ---------------WVGEGEKMVRALFAVARCQQPAVIFIDEI  185 (357)
T ss_dssp             ---------------STTHHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred             ---------------ccchHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence                           00111222333455556678999999998

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.61  E-value=2.7e-05  Score=65.68  Aligned_cols=29  Identities=31%  Similarity=0.438  Sum_probs=26.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ..+|.+++|+||+||||||+++.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45789999999999999999999998774

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.60  E-value=3.1e-05  Score=65.19  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .+++|+||+||||||+.+.|+++     |...+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~   32 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA   32 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence            47999999999999999999982     5455544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.56  E-value=4.7e-05  Score=64.44  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=26.0

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.++.+.+ .+.+|+|||||||||++..|.-.+-
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            44555544 5999999999999999999976554

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.56  E-value=9.4e-06  Score=74.05  Aligned_cols=31  Identities=32%  Similarity=0.435  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLL  132 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l  132 (302)
                      +.|.||+|+||||+++.+++.+.+..+++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~   79 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMV   79 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence            8999999999999999999998766554333

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.56  E-value=0.00066  Score=73.63  Aligned_cols=116  Identities=14%  Similarity=0.133  Sum_probs=71.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIAF  171 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~~  171 (302)
                      +.+|+++.|.||+|+||||++..++......+++|.+.+.+-...    |+.  ++..++.    ++....  ... .+.
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~----ql~--A~~lGvd~~~L~i~~~~--~le-ei~  799 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDIDNLLCSQPD--TGE-QAL  799 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HHH--HHHTTCCGGGCEEECCS--SHH-HHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH----HHH--HHHcCCChhheEEecCC--cHH-HHH
Confidence            678999999999999999999999998888888888876554321    111  3333322    112211  222 222


Q ss_pred             HHHHH-HHhCCCCeEEEcCCCCcc---------------ch-HHHHHHH---HHHHHHhchhhccccce
Q psy2881         172 NAINI-AQKKNTDIVIVDTSGRLS---------------TQ-SHLMREL---KKIKKVIEKKIFELPYE  220 (302)
Q Consensus       172 ~~la~-al~~~~~llllDEP~d~~---------------~~-~~l~~~L---~~l~~~~~~~i~~~~hd  220 (302)
                      +.+.+ ....+|++|++|.-.-..               .+ ..+.+.+   ..+++..+.++++++|-
T Consensus       800 ~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql  868 (1706)
T 3cmw_A          800 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI  868 (1706)
T ss_dssp             HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred             HHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            22211 123689999999986111               11 2233334   44567778888887773

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.55  E-value=2.4e-05  Score=71.88  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             CcceecCCCeE--EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          91 PLIFKKCKPFV--IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        91 ~i~l~~~~g~i--i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+++.+.+|++  ++|+||+||||||+.+.|++.+.
T Consensus        14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            33455566766  99999999999999999999775

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.54  E-value=0.00051  Score=62.18  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE-EEecccCCChhHHHHH
Q psy2881          70 TEQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQL  146 (302)
Q Consensus        70 ~~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V-~l~~~d~~~~~~~~ql  146 (302)
                      .+.+++.+.+.+..-++  ..+..   ...++.-+.|.||.|+||||+++.++..+.  +..+ .+.+.+...       
T Consensus        17 ~~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~-------   84 (322)
T 1xwi_A           17 LEGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVS-------   84 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHCGGGSCT---TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCC-------
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHhC---CCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHh-------
Confidence            34555556655543332  12221   124556788999999999999999998762  2222 233322210       


Q ss_pred             HHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         147 LILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                                   ...+ .........+..+....|.+|++||.-
T Consensus        85 -------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid  115 (322)
T 1xwi_A           85 -------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEID  115 (322)
T ss_dssp             -------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTT
T ss_pred             -------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHH
Confidence                         0001 112233344555666789999999984

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.52  E-value=4.4e-05  Score=64.03  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      +++|+|+|||||||+++.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=97.52  E-value=0.0005  Score=59.55  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             CeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.++++.| ..|+||||+...||..+...+.+|.+.+.|..
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG   42 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            46788876 56899999999999999988889999999974

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.51  E-value=0.00019  Score=60.89  Aligned_cols=39  Identities=28%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .-.++|+|+.||||||++..++...... .++...+.|..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~   76 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI   76 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence            3578999999999999999999876544 56777777765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.49  E-value=7.4e-05  Score=66.17  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++|+|..|||||||++.|.|.
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.48  E-value=0.00022  Score=63.67  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +++..+.|.||+|+|||++++.||..+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            455678889999999999999999887

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.47  E-value=6.5e-05  Score=61.89  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +|.+++|+|++||||||+.+.|+..+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999999765

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.47  E-value=0.0048  Score=56.43  Aligned_cols=39  Identities=31%  Similarity=0.410  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .++.+-|..|+||||+...+|..+...+.+|.+.+.|+.
T Consensus        27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   65 (349)
T 3ug7_A           27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA   65 (349)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            455556899999999999999999988899999999984

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.45  E-value=3.7e-05  Score=62.74  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      +..+.|.||.|+||||+++.++..+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            456789999999999999999988754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00016  Score=68.17  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +.+++.+.+.+..-+..  .+..  +.+.++.=+.|.||.|+|||++++.+|+.+...  =+.+.+.+..          
T Consensus       178 ~~~k~~l~e~v~~pl~~p~~~~~--~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~--~~~v~~~~l~----------  243 (428)
T 4b4t_K          178 DMQKQEIREAVELPLVQADLYEQ--IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA--FIRVNGSEFV----------  243 (428)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHH--HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE--EEEEEGGGTC----------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHh--CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eEEEecchhh----------
Confidence            45566666655543321  1222  234555668999999999999999999976421  1222222211          


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                .. +..+....+.+.+..|....|-++++||-
T Consensus       244 ----------~~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEi  274 (428)
T 4b4t_K          244 ----------HK-YLGEGPRMVRDVFRLARENAPSIIFIDEV  274 (428)
T ss_dssp             ----------CS-SCSHHHHHHHHHHHHHHHTCSEEEEEECT
T ss_pred             ----------cc-ccchhHHHHHHHHHHHHHcCCCeeechhh
Confidence                      00 11123344556666777788999999997

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.42  E-value=3.8e-05  Score=64.71  Aligned_cols=33  Identities=39%  Similarity=0.585  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      +++|.|++||||||+++.|+..+...+.+|.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~   34 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            689999999999999999999988666666543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.41  E-value=0.00057  Score=57.60  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++|+|+.|||||||++.|.+.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.41  E-value=0.00084  Score=59.71  Aligned_cols=28  Identities=29%  Similarity=0.422  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      ++..+.|.||+|+||||+++.++..+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4557899999999999999999988764

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=97.41  E-value=0.00017  Score=62.96  Aligned_cols=42  Identities=40%  Similarity=0.423  Sum_probs=36.7

Q ss_pred             CCeEEEEEc-CCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          98 KPFVIMIVG-VNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        98 ~g~ii~lvG-pnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      ++.++++.+ ..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   47 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG   47 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc
Confidence            567899985 669999999999999998888899999999863

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.39  E-value=7.6e-05  Score=69.29  Aligned_cols=46  Identities=17%  Similarity=0.120  Sum_probs=36.3

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC-CC-eEEEeccc
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR-KK-SVLLAACD  136 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~-~g-~V~l~~~d  136 (302)
                      |+.+.+.+|+.++|+||+|+||||+++.|++..... .+ .+.+.+.+
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG  213 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID  213 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence            577889999999999999999999999999987642 22 34444444

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.38  E-value=0.0007  Score=61.98  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+..+.|.||.|+||||+++.++..+..
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~   71 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEE   71 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999988754

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.38  E-value=0.00014  Score=67.58  Aligned_cols=39  Identities=18%  Similarity=0.078  Sum_probs=33.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .+..++++||+||||||+++.|+..+.+.+++|.+.+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            455789999999999999999999888888999887644

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00028  Score=66.63  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +..++.+++.+..-++.  .+.  .+.+.++.=+.|.||.|+|||++++.+|+.+...  =+.+.+.++..         
T Consensus       187 ~~~k~~l~e~v~~pl~~p~~f~--~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~~~v~~s~l~s---------  253 (437)
T 4b4t_L          187 TEQIRELREVIELPLKNPEIFQ--RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--FIFSPASGIVD---------  253 (437)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGTCC---------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEehhhhcc---------
Confidence            44555565555543321  122  2234566668899999999999999999976421  12222222210         


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                  .+..+....+......|....|-+|++||-
T Consensus       254 ------------k~~Gese~~ir~~F~~A~~~~P~IifiDEi  283 (437)
T 4b4t_L          254 ------------KYIGESARIIREMFAYAKEHEPCIIFMDEV  283 (437)
T ss_dssp             ------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred             ------------ccchHHHHHHHHHHHHHHhcCCceeeeecc
Confidence                        011122334555566777889999999997

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.37  E-value=0.00056  Score=54.29  Aligned_cols=36  Identities=14%  Similarity=0.292  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +.-+.|.||+|+|||++++.|+......++.+.++.
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~   59 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE   59 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence            345889999999999999999887655455444443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00023  Score=67.24  Aligned_cols=95  Identities=22%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +.+++.+.+.+..-+..  .+.  .+.+.++.=+.|.||.|+|||++++.+|+.....  =+.+.+.++.          
T Consensus       187 ~~~k~~l~e~v~~pl~~pe~f~--~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~----------  252 (434)
T 4b4t_M          187 DKQIEELVEAIVLPMKRADKFK--DMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--FLKLAAPQLV----------  252 (434)
T ss_dssp             HHHHHHHHHHTHHHHHCSHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGC----------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--EEEEehhhhh----------
Confidence            45555566555443321  112  2335556678999999999999999999976421  1222222211          


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                 ..+..+....++.....|....|-+|++||-
T Consensus       253 -----------~~~vGese~~ir~lF~~A~~~aP~IifiDEi  283 (434)
T 4b4t_M          253 -----------QMYIGEGAKLVRDAFALAKEKAPTIIFIDEL  283 (434)
T ss_dssp             -----------SSCSSHHHHHHHHHHHHHHHHCSEEEEEECT
T ss_pred             -----------hcccchHHHHHHHHHHHHHhcCCeEEeecch
Confidence                       0011122334455566666778999999996

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.36  E-value=0.00011  Score=59.94  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .+|..++|+|++|||||||++.+++.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35788999999999999999999875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.34  E-value=0.00011  Score=60.86  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      ..+++++++..++. .++++|++||||||+++.+.+
T Consensus        11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            34567778876655 678999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.33  E-value=0.00012  Score=59.19  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +++|+||+||||||+.+.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999998763

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.33  E-value=0.0014  Score=71.22  Aligned_cols=118  Identities=12%  Similarity=0.096  Sum_probs=70.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCe---eecCCCCCHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV---ISEKKITDPAAIAFN  172 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~---~~~~~~~~~~~~~~~  172 (302)
                      +++|.++.|.||+|+||||++..++......++.+.+.+.+-.....      +++..++..   +.. ...... ...+
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~------~a~~lGvd~~~L~i~-~~~~~e-~~l~  451 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI------YARKLGVDIDNLLCS-QPDTGE-QALE  451 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH------HHHHTTCCGGGCEEE-CCSSHH-HHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH------HHHHcCCCHHHeEEc-CCCCHH-HHHH
Confidence            56899999999999999999999988877778888888766432211      122333221   111 111222 2222


Q ss_pred             HHHH-HHhCCCCeEEEcCCC--Ccc-------------ch-HHHHHHH---HHHHHHhchhhcccccee
Q psy2881         173 AINI-AQKKNTDIVIVDTSG--RLS-------------TQ-SHLMREL---KKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       173 ~la~-al~~~~~llllDEP~--d~~-------------~~-~~l~~~L---~~l~~~~~~~i~~~~hd~  221 (302)
                      .+.+ ....+|++|++|...  .+.             .+ ..+.+.+   ..+++..+.+++++.|-.
T Consensus       452 ~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~  520 (1706)
T 3cmw_A          452 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR  520 (1706)
T ss_dssp             HHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred             HHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence            2211 224689999999886  210             11 1233344   444567788888887743

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.32  E-value=0.00054  Score=61.87  Aligned_cols=72  Identities=13%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      .++.-+.|.||.|+||||+++.++....   ..+......       +....|.             ..........+..
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~~-------~l~~~~~-------------g~~~~~~~~~f~~  105 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS-------DLVSKWM-------------GESEKLVKQLFAM  105 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEHH-------HHHTTTG-------------GGHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEchH-------HHhhccc-------------chHHHHHHHHHHH
Confidence            3456788999999999999999998752   233222210       0000000             1222334444556


Q ss_pred             HHhCCCCeEEEcCCC
Q psy2881         177 AQKKNTDIVIVDTSG  191 (302)
Q Consensus       177 al~~~~~llllDEP~  191 (302)
                      +...+|.+|++||..
T Consensus       106 a~~~~~~vl~iDEid  120 (322)
T 3eie_A          106 ARENKPSIIFIDQVD  120 (322)
T ss_dssp             HHHTSSEEEEEECGG
T ss_pred             HHhcCCeEEEechhh
Confidence            667789999999984

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.31  E-value=0.00016  Score=59.64  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+|.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999999866

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00025  Score=66.19  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +.+++.+++.+.--++  ..+..+  .+.++.=+.|.||.|+|||++++.+|+.....  =+.+.+.+..          
T Consensus       154 ~~~k~~l~e~v~~Pl~~pe~f~~~--gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~----------  219 (405)
T 4b4t_J          154 TKQIKEIKEVIELPVKHPELFESL--GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAELV----------  219 (405)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHH--TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGGS----------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHhC--CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHhh----------
Confidence            4455555555543222  122222  23444458899999999999999999976421  1223332221          


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                . .+-.+....+++.+..|....|-+|++||-
T Consensus       220 ----------s-k~vGese~~vr~lF~~Ar~~aP~IIFiDEi  250 (405)
T 4b4t_J          220 ----------Q-KYIGEGSRMVRELFVMAREHAPSIIFMDEI  250 (405)
T ss_dssp             ----------C-SSTTHHHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             ----------c-cccchHHHHHHHHHHHHHHhCCceEeeecc
Confidence                      0 011133345556677777888999999997

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.30  E-value=0.00015  Score=62.52  Aligned_cols=27  Identities=33%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+|.+++|+|++||||||+.+.|++.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            578899999999999999999999865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.30  E-value=9.9e-05  Score=66.34  Aligned_cols=26  Identities=38%  Similarity=0.365  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++.+++|+|++|||||||++.|.|.
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34568999999999999999999985

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.29  E-value=0.00074  Score=59.22  Aligned_cols=27  Identities=22%  Similarity=0.238  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++..+.|.||+|+||||+++.++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            345678899999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.29  E-value=0.00027  Score=59.11  Aligned_cols=35  Identities=26%  Similarity=0.535  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      +|.+++|.|+.||||||+.+.|+..+...+ .+...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~   37 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT   37 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence            467899999999999999999999876544 56443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.29  E-value=0.00015  Score=74.54  Aligned_cols=60  Identities=12%  Similarity=0.164  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhCCCC--eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         166 PAAIAFNAINIAQKKNTD--IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       166 ~~~~~~~~la~al~~~~~--llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      -.+..+-.||+|++++|+  ++|+|||+   |+.....+++.|+++.+. |.|+++++||..++..
T Consensus       467 GGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~~  531 (916)
T 3pih_A          467 GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIRN  531 (916)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh
Confidence            344555569999999887  99999998   999999999999999754 8899999999876543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.28  E-value=0.00032  Score=60.90  Aligned_cols=41  Identities=29%  Similarity=0.491  Sum_probs=36.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+.-++.++|..||||||++..|+..+. .+.+|.+.+.|++
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~   52 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG   52 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            3457899999999999999999999988 7889999998875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.27  E-value=0.00016  Score=59.09  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      |.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.27  E-value=0.00017  Score=59.40  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      |.++.|.||.||||||+.+.|+..+...
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~   30 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE   30 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            5689999999999999999999877543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.26  E-value=0.0011  Score=72.92  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN  175 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la  175 (302)
                      +++|+++.|.||+|+|||||+..++.-....++++.+.+.+-......  .+.++-...--.+.+..   +.+...+.+.
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~--a~~~G~dl~~l~v~~~~---~~E~~l~~~~ 1498 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKLGVDIDNLLCSQPD---TGEQALEICD 1498 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHTTCCTTTCEEECCS---SHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH--HHHcCCCchhceeecCC---hHHHHHHHHH
Confidence            568999999999999999999999887777788999987653211111  23333221111222221   2222222111


Q ss_pred             -HHHhCCCCeEEEcCCC
Q psy2881         176 -IAQKKNTDIVIVDTSG  191 (302)
Q Consensus       176 -~al~~~~~llllDEP~  191 (302)
                       .+....|++|++|+-.
T Consensus      1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHHHTCCSEEEESCGG
T ss_pred             HHHhcCCCCEEEEcChh
Confidence             2234789999999973

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.25  E-value=0.00036  Score=58.84  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      ..+.|.||+|+||||+++.++..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            478999999999999999999877643

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0005  Score=64.60  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +.+++.+++.+..-++.  .+.  .+.+.++.=+.|.||.|+|||++++.+|+.....  =+.+.+.++.          
T Consensus       188 d~~k~~L~e~v~~Pl~~pe~f~--~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--fi~v~~s~l~----------  253 (437)
T 4b4t_I          188 ESQIQEIKESVELPLTHPELYE--EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--FLRIVGSELI----------  253 (437)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHH--HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--EEEEESGGGC----------
T ss_pred             HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--EEEEEHHHhh----------
Confidence            55666666665543321  122  2234555668999999999999999999976421  1222222211          


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                . .+-.+....++..+..|....|-+|++||-
T Consensus       254 ----------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEi  284 (437)
T 4b4t_I          254 ----------Q-KYLGDGPRLCRQIFKVAGENAPSIVFIDEI  284 (437)
T ss_dssp             ----------C-SSSSHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             ----------h-ccCchHHHHHHHHHHHHHhcCCcEEEEehh
Confidence                      1 111123345556666777788999999986

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.24  E-value=9.1e-05  Score=64.82  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|.||+|+||||+++.++....
T Consensus        47 vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            77999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.24  E-value=0.00015  Score=58.43  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      -.++|+|++|||||||++.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998753

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00041  Score=65.80  Aligned_cols=95  Identities=19%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH
Q psy2881          71 EQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI  148 (302)
Q Consensus        71 ~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~  148 (302)
                      +.+++.+++.+.--+..  .+.  .+.+.++.=+.|.||.|+|||++++.+|+.....  =+.+.+.++.          
T Consensus       215 ~~~k~~L~e~V~~pl~~pe~f~--~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--fi~vs~s~L~----------  280 (467)
T 4b4t_H          215 KDQIEKLREVVELPLLSPERFA--TLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--FIRVIGSELV----------  280 (467)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHH--HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGC----------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHH--HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--eEEEEhHHhh----------
Confidence            45666666555433321  222  2334556668899999999999999999976421  1222222211          


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                                . .+-.+....++..+..|....|-+|++||-
T Consensus       281 ----------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEi  311 (467)
T 4b4t_H          281 ----------Q-KYVGEGARMVRELFEMARTKKACIIFFDEI  311 (467)
T ss_dssp             ----------C-CSSSHHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             ----------c-ccCCHHHHHHHHHHHHHHhcCCceEeeccc
Confidence                      0 111123345556667777888999999997

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.22  E-value=0.00051  Score=62.71  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      +|..+.|.||.|+||||+++.++..+.....-+.+.+..
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  107 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE  107 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence            467899999999999999999999887544555555544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.22  E-value=0.00039  Score=66.03  Aligned_cols=21  Identities=43%  Similarity=0.692  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|.+|||||||++.|+|
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEE
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            799999999999999999987

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=97.22  E-value=0.00037  Score=63.07  Aligned_cols=45  Identities=33%  Similarity=0.403  Sum_probs=38.6

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ..+..-++++|.|-.|+||||+...||..+...+.+|.+.+.|++
T Consensus        43 ~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq   87 (314)
T 3fwy_A           43 DKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK   87 (314)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred             cCCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            345667899999999999999999999999999999999999975

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.22  E-value=0.00032  Score=61.43  Aligned_cols=39  Identities=31%  Similarity=0.522  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      ++.++.|+|++||||||+.+.|+..+...+-.+.+.+.|
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D   41 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD   41 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence            467899999999999999999998876544444434444

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.20  E-value=0.00021  Score=62.53  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+++|+||+||||||+.+.|+..+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            378999999999999999999865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.18  E-value=7e-05  Score=62.61  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      +++++++..++. .++++|++|||||||++.+.+
T Consensus        15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            445667776655 578999999999999999875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.17  E-value=0.00055  Score=62.84  Aligned_cols=99  Identities=15%  Similarity=0.227  Sum_probs=54.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH
Q psy2881          67 LFNTEQVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE  144 (302)
Q Consensus        67 ~~~~~~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~  144 (302)
                      +...+.+++.+.+.+..-+.  ..+..   ...++.-+.|.||.|+||||+++.++..+.   ..+.....       .+
T Consensus        53 i~G~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~-------~~  119 (355)
T 2qp9_X           53 VAGLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSS-------SD  119 (355)
T ss_dssp             SCCGGGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEH-------HH
T ss_pred             hCCHHHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeH-------HH
Confidence            34456666666666543332  11221   123445588999999999999999998763   22322211       11


Q ss_pred             HHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC
Q psy2881         145 QLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG  191 (302)
Q Consensus       145 ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~  191 (302)
                      .   .....         + .........+..+....|.+|++||..
T Consensus       120 l---~~~~~---------g-~~~~~~~~~f~~a~~~~~~vl~iDEid  153 (355)
T 2qp9_X          120 L---VSKWM---------G-ESEKLVKQLFAMARENKPSIIFIDQVD  153 (355)
T ss_dssp             H---HSCC-------------CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred             H---hhhhc---------c-hHHHHHHHHHHHHHHcCCeEEEEechH
Confidence            1   01000         0 111233344555566789999999985

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.17  E-value=0.00032  Score=57.66  Aligned_cols=33  Identities=21%  Similarity=0.456  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      ++.|.|+.||||||+.+.|+..+...+-.+.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~   35 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence            689999999999999999999887544445544

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.16  E-value=0.00024  Score=57.81  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      +.++.|.||+||||||+.+.|+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            35799999999999999999987

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.16  E-value=0.0029  Score=69.53  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=69.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIAF  171 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~~  171 (302)
                      +++|.++.|.||+|+||||++..++......++.|.+.+.+-.....      +++..++.    ++...  .... .+.
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~------~a~~lGvd~~~L~I~~~--~~~e-~il  450 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI------YARKLGVDIDNLLCSQP--DTGE-QAL  450 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH------HHHHTTCCTTTCEEECC--SSHH-HHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH------HHHHcCCCHHHeEEeCC--CCHH-HHH
Confidence            56899999999999999999999998887777888887765432211      12233322    12221  1222 222


Q ss_pred             HHHHH-HHhCCCCeEEEcCCC--Cc--------c-----ch-HHHHHHHHHH---HHHhchhhccccce
Q psy2881         172 NAINI-AQKKNTDIVIVDTSG--RL--------S-----TQ-SHLMRELKKI---KKVIEKKIFELPYE  220 (302)
Q Consensus       172 ~~la~-al~~~~~llllDEP~--d~--------~-----~~-~~l~~~L~~l---~~~~~~~i~~~~hd  220 (302)
                      +.+.+ ....+|++|++|.-.  .+        .     .+ ..+...|+++   ++..+.+++++.|-
T Consensus       451 ~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl  519 (2050)
T 3cmu_A          451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI  519 (2050)
T ss_dssp             HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            22211 124689999999874  11        0     11 2234445554   56678788877773

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.15  E-value=0.00025  Score=65.47  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +++|+|++|||||||++.|++...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            599999999999999999998643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.15  E-value=0.00032  Score=67.35  Aligned_cols=71  Identities=23%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      .++.-+.|.||+|+|||++++.|+...   +..+...++.        .+  .....          .+........+..
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~--------~l--~~~~~----------g~~~~~~~~~f~~  292 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP--------EI--MSKLA----------GESESNLRKAFEE  292 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH--------HH--HTSCT----------THHHHHHHHHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch--------Hh--hhhhc----------chhHHHHHHHHHH
Confidence            445568899999999999999998865   3333332211        00  00000          1122233444666


Q ss_pred             HHhCCCCeEEEcCC
Q psy2881         177 AQKKNTDIVIVDTS  190 (302)
Q Consensus       177 al~~~~~llllDEP  190 (302)
                      |....|.+|+|||.
T Consensus       293 A~~~~p~iLfLDEI  306 (489)
T 3hu3_A          293 AEKNAPAIIFIDEL  306 (489)
T ss_dssp             HHHTCSEEEEEESH
T ss_pred             HHhcCCcEEEecch
Confidence            67778899999997

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.14  E-value=0.00025  Score=58.93  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +++|.|+.||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.13  E-value=0.00027  Score=58.04  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.++.|+||.||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999999999766

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.13  E-value=0.00024  Score=58.22  Aligned_cols=27  Identities=37%  Similarity=0.316  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++.++.|+|++||||||+.+.|+..+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.12  E-value=0.00031  Score=57.89  Aligned_cols=26  Identities=31%  Similarity=0.705  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +|.+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.12  E-value=0.00029  Score=58.23  Aligned_cols=27  Identities=33%  Similarity=0.491  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++.+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999999765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.12  E-value=0.00051  Score=57.64  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL  131 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~  131 (302)
                      .+|.+++|.|+.||||||+.+.|+..+....-++.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~   41 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE   41 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            46789999999999999999999988765544553

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.11  E-value=0.00024  Score=58.07  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++.|+||+||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999999876

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.10  E-value=0.00028  Score=61.11  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+-+++|.||+||||||+.+.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999999766

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.00027  Score=57.85  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++|+|++|||||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.09  E-value=0.00034  Score=59.23  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      ++.+++|.|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999987

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.09  E-value=0.0018  Score=58.58  Aligned_cols=42  Identities=31%  Similarity=0.375  Sum_probs=35.7

Q ss_pred             CCC--eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          97 CKP--FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g--~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+|  .++.+-|..|+||||+...+|..+...+.+|.+.+.|+.
T Consensus        10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   53 (324)
T 3zq6_A           10 NKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA   53 (324)
T ss_dssp             BTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            346  455566899999999999999999988899999999973

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.09  E-value=0.00024  Score=67.17  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhh------------hCCCeEEEecc
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFK------------KRKKSVLLAAC  135 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~------------~~~g~V~l~~~  135 (302)
                      .-.++|+|+||||||||++.|+|...            +..|.+.+.|.
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~  228 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR  228 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence            34799999999999999999999753            44566766664

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.09  E-value=0.0012  Score=56.27  Aligned_cols=114  Identities=9%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      -.+|.+..+.||=||||||.+-.++..+.-.+.+|.+..-.. .|.+..    ....+.++........ +..    +.+
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~-~~~----~~~   95 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVS-ASK----DIF   95 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEECS-SGG----GGG
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHH----HHHhhcCCeeEEeecC-CHH----HHH
Confidence            357899999999999999999999888887888888874211 121111    1112222221111011 111    111


Q ss_pred             HHHHh-CCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         175 NIAQK-KNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       175 a~al~-~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      .  .+ .++++|++||.-.... . .++.+..+.+. +..+++.-.|..+
T Consensus        96 ~--~~~~~~dvViIDEaQF~~~-~-~V~~l~~l~~~-~~~Vi~~Gl~~DF  140 (214)
T 2j9r_A           96 K--HITEEMDVIAIDEVQFFDG-D-IVEVVQVLANR-GYRVIVAGLDQDF  140 (214)
T ss_dssp             G--GCCSSCCEEEECCGGGSCT-T-HHHHHHHHHHT-TCEEEEEECSBCT
T ss_pred             H--HHhcCCCEEEEECcccCCH-H-HHHHHHHHhhC-CCEEEEEeccccc
Confidence            1  12 3589999999952211 1 33667776554 6666666666554

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=97.08  E-value=0.001  Score=61.80  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=36.6

Q ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHhHhhh------CCCeEEEecccCCC
Q psy2881          97 CKPFVIMIV-GVNGVGKTTTIGKLANYFKK------RKKSVLLAACDTFR  139 (302)
Q Consensus        97 ~~g~ii~lv-GpnGsGKTTll~~Lag~~~~------~~g~V~l~~~d~~~  139 (302)
                      .++.++++. |..|+||||+...||..+..      .+.+|.+.+.|++.
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~  155 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS  155 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence            457889988 68899999999999998873      57899999999853

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.08  E-value=0.00028  Score=56.85  Aligned_cols=19  Identities=42%  Similarity=0.634  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKL  119 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~L  119 (302)
                      +++|+||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999998

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.08  E-value=0.0011  Score=55.52  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV  130 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V  130 (302)
                      .+|.+++|.|+.||||||+.+.|+..+....-++
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~   41 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV   41 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            4678999999999999999999998776444344

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00035  Score=58.07  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      ++.+++|+|++||||||+.+.|+..     |-..+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            4679999999999999999999874     5445543

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=97.06  E-value=0.00077  Score=57.53  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC-CChhHHHHHHHhcccCCCCeee--cCCCCCHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT-FRAAAYEQLLILGKYNDVPVIS--EKKITDPAAIAFNA  173 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~-~~~~~~~ql~~~~~~~~~~~~~--~~~~~~~~~~~~~~  173 (302)
                      ..|.+..+.||-||||||.+-..+..+...+.++.+..-.. .|.+.    .....+.++..-.  .....+        
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~----~~I~Sr~G~~~~a~~v~~~~d--------   93 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHK----EKVVSHNGNAIEAINISKASE--------   93 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC---------------CBTTBCCEEEEESSGGG--------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchh----hhHHHhcCCceeeEEeCCHHH--------
Confidence            56899999999999999955444555566667777763221 12111    1233344433221  111111        


Q ss_pred             HHHHHhCCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         174 INIAQKKNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       174 la~al~~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      |...+..++++|++||+-  +.    .+.+.+.++++ .+..+++.--|..+
T Consensus        94 i~~~i~~~~dvV~IDEaQFf~~----~~v~~l~~la~-~gi~Vi~~GLd~DF  140 (219)
T 3e2i_A           94 IMTHDLTNVDVIGIDEVQFFDD----EIVSIVEKLSA-DGHRVIVAGLDMDF  140 (219)
T ss_dssp             GGGSCCTTCSEEEECCGGGSCT----HHHHHHHHHHH-TTCEEEEEEESBCT
T ss_pred             HHHHHhcCCCEEEEechhcCCH----HHHHHHHHHHH-CCCEEEEeeccccc
Confidence            111123678999999994  32    35566777763 46555544444433

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.05  E-value=0.00022  Score=58.64  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++|+|++|||||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48899999999999999999854

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.05  E-value=0.00034  Score=58.32  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +|.+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.05  E-value=0.00018  Score=59.69  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++.+++|.|+.||||||+.+.|+..+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999999876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.03  E-value=0.00073  Score=56.16  Aligned_cols=36  Identities=28%  Similarity=0.266  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      +|.++.+.||.|+||||++..++..+...+.+|.+.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            478999999999999999977777666666777764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.02  E-value=0.001  Score=64.36  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +...++|+|+.|+|||||+..|++.
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhh
Confidence            3457999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.02  E-value=0.00026  Score=63.34  Aligned_cols=41  Identities=22%  Similarity=0.397  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ++-+++|.||+||||||+.+.|+..+...+-++.+.+.|-+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            45689999999999999999999877644445666666543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.01  E-value=0.0036  Score=58.67  Aligned_cols=27  Identities=33%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ..+.++.|+|++||||||+.+.|+..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            357899999999999999999998754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.01  E-value=0.00025  Score=66.15  Aligned_cols=27  Identities=37%  Similarity=0.402  Sum_probs=23.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +..+..++|+|+||||||||++.|++.
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            456778999999999999999999987

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.00  E-value=0.001  Score=60.08  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|.||+|+||||+++.+++.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999999875

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=96.99  E-value=0.0045  Score=56.37  Aligned_cols=40  Identities=43%  Similarity=0.433  Sum_probs=35.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ..++.+-|..|+||||+...+|..+...+.+|.+.+.|..
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~   55 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA   55 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            3577778999999999999999999888889999999964

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.99  E-value=0.00028  Score=65.19  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             CCCcceecCCCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          89 EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        89 l~~i~l~~~~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      +++..+++.+| +.+|+|||||||||++-.|.
T Consensus        16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC-eEEEECCCCCCHHHHHHHHH

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.98  E-value=0.00065  Score=64.49  Aligned_cols=71  Identities=14%  Similarity=0.191  Sum_probs=43.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA  177 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a  177 (302)
                      ++.-+.|.||+|+||||+++.+|..+...---+.+.+.+.+..                    .. ... ....+.+.+|
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~--------------------~~-~~~-~~~~~~f~~a  119 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST--------------------EI-KKT-EVLMENFRRA  119 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS--------------------SS-CHH-HHHHHHHHHT
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH--------------------hh-hhh-HHHHHHHHHH
Confidence            4456889999999999999999998754323334443332210                    00 011 1233444444


Q ss_pred             ---HhCCCCeEEEcCC
Q psy2881         178 ---QKKNTDIVIVDTS  190 (302)
Q Consensus       178 ---l~~~~~llllDEP  190 (302)
                         ....|.+|++||.
T Consensus       120 ~~~~~~~~~il~iDEi  135 (456)
T 2c9o_A          120 IGLRIKETKEVYEGEV  135 (456)
T ss_dssp             EEEEEEEEEEEEEEEE
T ss_pred             HhhhhcCCcEEEEech
Confidence               4467899999987

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.98  E-value=0.00038  Score=58.14  Aligned_cols=22  Identities=41%  Similarity=0.638  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.|+||+||||||+++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987654

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=96.96  E-value=0.0073  Score=51.83  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             eEEEEEcC-CCCCHHHHHHHHHhHhhhCCCeEEEe-----cccCCCh----hHHHHHHHhcccCC----CCeeecCCCCC
Q psy2881         100 FVIMIVGV-NGVGKTTTIGKLANYFKKRKKSVLLA-----ACDTFRA----AAYEQLLILGKYND----VPVISEKKITD  165 (302)
Q Consensus       100 ~ii~lvGp-nGsGKTTll~~Lag~~~~~~g~V~l~-----~~d~~~~----~~~~ql~~~~~~~~----~~~~~~~~~~~  165 (302)
                      ..+.|.|. +|+||||+...|+..+...+.+|.+.     |.+....    ....+ ........    .++.... +..
T Consensus         5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~-p~s   82 (228)
T 3of5_A            5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL-NAYKHKFTAAEINLISFNQ-AVA   82 (228)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH-HHTTTSSCHHHHCSEEESS-SSC
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH-HhcCCCCChhhEEEEEECC-CCC
Confidence            46788996 79999999999999999888888774     2221110    01111 11110000    1222211 111


Q ss_pred             H------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCC
Q psy2881         166 P------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTG  230 (302)
Q Consensus       166 ~------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g  230 (302)
                      +            ...+.+.+.+.+..++|++|+|.|+   ++-.....   ..++++..+.       -+.+|.++..+
T Consensus        83 p~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~---~adla~~l~~-------pviLV~~~~~~  152 (228)
T 3of5_A           83 PHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTT---QLDLIKALQI-------PVLLVSAIKVG  152 (228)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCB---HHHHHHHHTC-------CEEEEEECSTT
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchh---HHHHHHHcCC-------CEEEEEcCCcc
Confidence            1            1122233332255789999999985   33221111   1122222221       23445555544


Q ss_pred             h--hHHHHHHHH-HhhcCCCeEEEecCCCC-CchhHHHH-hhhHhCCceEE
Q psy2881         231 Q--NTLSQIKEF-SKILRITGLIITKLDGT-TKGGILAA-IAKKYSIPLYF  276 (302)
Q Consensus       231 ~--~~~~~~~~f-~~~~~~~~~i~tk~d~~-~~~g~~~~-~~~~~~~pv~~  276 (302)
                      .  ..+...+.+ .....+.|+|+|+.+.. ........ +...+++|+.-
T Consensus       153 ~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG  203 (228)
T 3of5_A          153 CINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSA  203 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSE
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEE
Confidence            3  223333333 33456678999999875 33333344 44457988653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.96  E-value=0.001  Score=56.74  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +|.++.|-|+.||||||.++.|+..+...+-+|.....
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~   42 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE   42 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC
Confidence            58899999999999999999999999877767765433

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.95  E-value=0.0003  Score=57.61  Aligned_cols=27  Identities=37%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++.++.|.|+.||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            467899999999999999999987653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.93  E-value=0.00054  Score=58.10  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +|.+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999999876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.93  E-value=0.0021  Score=60.76  Aligned_cols=27  Identities=22%  Similarity=0.164  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++.-+.|.||.|+||||+++.++..+
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            345678899999999999999999876

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.0012  Score=54.83  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|.||.|+||||+++.++..+.
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            88999999999999999998764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.92  E-value=0.0014  Score=56.82  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCe-EEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKS-VLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~-V~l~  133 (302)
                      +|.++.|.|+.||||||+++.|+..+...+-+ +.+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~   62 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT   62 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence            58899999999999999999999999876656 4443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.92  E-value=0.00069  Score=57.98  Aligned_cols=41  Identities=34%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      -...++.++.|+||.||||||..+.|+..+    |-..+...|..
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdll   64 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLL   64 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHH
Confidence            345678999999999999999999999876    33445444443

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.92  E-value=0.0007  Score=55.57  Aligned_cols=26  Identities=35%  Similarity=0.610  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.+++|.|+.||||||+.+.|+..+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998765

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.91  E-value=0.0016  Score=55.42  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC-eEEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKK-SVLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g-~V~l~  133 (302)
                      +|.++.|-|+.||||||.++.|+..+...+. .|.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~   38 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT   38 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence            4789999999999999999999999987665 56443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.91  E-value=0.0015  Score=66.27  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhh--ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE-EecccCCChhHHHHHHH
Q psy2881          72 QVRNVLHNLLVNLLK--SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL-LAACDTFRAAAYEQLLI  148 (302)
Q Consensus        72 ~~~~~l~~~l~~~l~--~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~-l~~~d~~~~~~~~ql~~  148 (302)
                      ..++.+++.+.--++  ..+..  +.+.++.-+.|.||.|+||||+++.+|+.+.   ..+. +.+.+.           
T Consensus       211 ~~~~~l~e~v~~pl~~p~~f~~--~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~~~l-----------  274 (806)
T 3cf2_A          211 KQLAQIKEMVELPLRHPALFKA--IGVKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI-----------  274 (806)
T ss_dssp             TTHHHHHHHHHHHHHCCGGGTS--CCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEHHHH-----------
T ss_pred             HHHHHHHHHHHHHccCHHHHhh--cCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEhHHh-----------
Confidence            344445554443232  23333  3345566788999999999999999998653   2222 222111           


Q ss_pred             hcccCCCCeeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP  190 (302)
                      ..          ....+........+..|....|-+|++||-
T Consensus       275 ~s----------k~~gese~~lr~lF~~A~~~~PsIIfIDEi  306 (806)
T 3cf2_A          275 MS----------KLAGESESNLRKAFEEAEKNAPAIIFIDEL  306 (806)
T ss_dssp             HS----------SCTTHHHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred             hc----------ccchHHHHHHHHHHHHHHHcCCeEEEEehh
Confidence            01          111123344556677777788999999997

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.91  E-value=0.0018  Score=59.98  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=42.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA  177 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a  177 (302)
                      ++.-+.|.||.|+||||+++.++...   +..+....+......       |            .+ .........+..+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~-------~------------~g-~~~~~~~~~~~~a  203 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK-------Y------------VG-EGEKLVRALFAVA  203 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC---------------------------CHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc-------c------------cc-hHHHHHHHHHHHH
Confidence            45678999999999999999998764   334433332211000       0            00 0112223334455


Q ss_pred             HhCCCCeEEEcCCC
Q psy2881         178 QKKNTDIVIVDTSG  191 (302)
Q Consensus       178 l~~~~~llllDEP~  191 (302)
                      ...+|.+|+|||.-
T Consensus       204 ~~~~~~il~iDEid  217 (389)
T 3vfd_A          204 RELQPSIIFIDQVD  217 (389)
T ss_dssp             HHSSSEEEEEETGG
T ss_pred             HhcCCeEEEEECch
Confidence            56788999999983

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.90  E-value=0.0024  Score=65.29  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      ..+.|+||+|+|||++++.|+..+...++.+...++.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~  625 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT  625 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence            5788999999999999999999987655555544443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.90  E-value=0.00068  Score=56.58  Aligned_cols=28  Identities=32%  Similarity=0.427  Sum_probs=24.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      -.++.+++|.|+.||||||+.+.|+..+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3456799999999999999999998754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.89  E-value=0.0043  Score=53.98  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .-+.|.||+|+|||++++.|+......++.+...++
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~   65 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC   65 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence            457899999999999999999887655555544443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.88  E-value=0.00087  Score=55.12  Aligned_cols=31  Identities=39%  Similarity=0.570  Sum_probs=25.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVL  131 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~  131 (302)
                      +++|.|+.||||||+.+.|+..+...+-.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i   32 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS   32 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            6899999999999999999998765444443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.87  E-value=0.0022  Score=59.18  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             CCeEEEE--EcCCCCCHHHHHHHHHhHhhh
Q psy2881          98 KPFVIMI--VGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        98 ~g~ii~l--vGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+..+.|  .||.|+||||+++.++..+..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            3567777  999999999999999987754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.87  E-value=0.00068  Score=56.58  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ..|.+++|+|+.||||||+.+.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999866

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.87  E-value=0.00097  Score=57.94  Aligned_cols=28  Identities=25%  Similarity=0.494  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.-+++|.|+.||||||+.+.|+..+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3457899999999999999999988654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.86  E-value=0.00058  Score=58.28  Aligned_cols=27  Identities=26%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++.+++|+|+.||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998765

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=96.86  E-value=0.0017  Score=59.68  Aligned_cols=40  Identities=38%  Similarity=0.507  Sum_probs=34.8

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881         100 FVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus       100 ~ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      .++++. +..|+||||+...||..+...+.+|.+.+.|.+.
T Consensus         2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~   42 (361)
T 3pg5_A            2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQC   42 (361)
T ss_dssp             EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence            366776 5789999999999999998888999999999874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.86  E-value=0.0049  Score=57.41  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      -.++++|+.|+|||||++.|.+....
T Consensus        12 ~~I~iiG~~~~GKSTLi~~L~~~~~~   37 (405)
T 2c78_A           12 VNVGTIGHVDHGKTTLTAALTYVAAA   37 (405)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHhhhhh
Confidence            46899999999999999999986544

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.85  E-value=0.00057  Score=58.06  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.++.|+||.||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999998763

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.84  E-value=0.00067  Score=56.59  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +++|.|++||||||+.+.|+..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999998763

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.84  E-value=0.0015  Score=61.49  Aligned_cols=21  Identities=43%  Similarity=0.692  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|++|||||||++.|++
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~   25 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAG   25 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEE
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999986

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=96.83  E-value=0.0065  Score=55.03  Aligned_cols=39  Identities=44%  Similarity=0.445  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .++.+-|..|+||||+...||..+...+.+|.+.+.|+.
T Consensus        20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            455566899999999999999999888889999999975

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.83  E-value=0.0011  Score=68.10  Aligned_cols=57  Identities=7%  Similarity=0.118  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhCCC--CeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         167 AAIAFNAINIAQKKNT--DIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       167 ~~~~~~~la~al~~~~--~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+..+-.||+++..+|  +++|||||+   |+.....+++.|+++.+ .|.|+++++||...+
T Consensus       508 GEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i  569 (972)
T 2r6f_A          508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTM  569 (972)
T ss_dssp             HHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH
Confidence            4444555999999884  999999998   99999999999999964 588999999988654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0059  Score=55.21  Aligned_cols=29  Identities=7%  Similarity=0.106  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+|..+.|.||.|+|||++++.++..+..
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45678899999999999999999998863

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.82  E-value=0.0057  Score=52.68  Aligned_cols=109  Identities=13%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec--ccCCChhHHHHHHHhcccCCCCee--ecCCCCCHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA--CDTFRAAAYEQLLILGKYNDVPVI--SEKKITDPAAIAF  171 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~--~d~~~~~~~~ql~~~~~~~~~~~~--~~~~~~~~~~~~~  171 (302)
                      -..|.+..+.||=||||||.+-..+..+.-.+.+|.+..  .|. |.+ . .+   ..+.++...  ......+      
T Consensus        16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg-~-~i---~sr~G~~~~a~~i~~~~d------   83 (234)
T 2orv_A           16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS-S-SF---CTHDRNTMEALPACLLRD------   83 (234)
T ss_dssp             --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEESSGGG------
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch-H-HH---HhhcCCeeEEEecCCHHH------
Confidence            356999999999999999998888887777777888865  332 322 1 11   112232211  1111111      


Q ss_pred             HHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         172 NAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                       .+.  .+.++++|++||.--...   +.+.+..+.+ .+..+++.-++..+
T Consensus        84 -i~~--~~~~~dvViIDEaQF~~~---v~el~~~l~~-~gi~VI~~GL~~DF  128 (234)
T 2orv_A           84 -VAQ--EALGVAVIGIDEGQFFPD---IVEFCEAMAN-AGKTVIVAALDGTF  128 (234)
T ss_dssp             -GHH--HHTTCSEEEESSGGGCTT---HHHHHHHHHH-TTCEEEEECCSBCT
T ss_pred             -HHH--HhccCCEEEEEchhhhhh---HHHHHHHHHh-CCCEEEEEeccccc
Confidence             122  237799999999952211   4444444433 56666666666443

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.81  E-value=0.0017  Score=54.59  Aligned_cols=109  Identities=11%  Similarity=0.098  Sum_probs=62.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC-ChhH--HHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF-RAAA--YEQLLILGKYNDVPVISEKKITDPAAIAFNA  173 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~-~~~~--~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      ..|++..+.||-||||||.|-...+.+...+.+|.+...... |.+.  ...+...     .+........+..      
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~-----~~A~~~~~~~d~~------   86 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNT-----MEALPACLLRDVA------   86 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHH-----SEEEEESSGGGGH------
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCc-----ccceecCCHHHHH------
Confidence            468999999999999997776667776766778888752211 2110  0111110     1111111111111      


Q ss_pred             HHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         174 INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       174 la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                       .  ...+.|+|++||.--.+.   +.+.+..+. ..|+.+++...|..+
T Consensus        87 -~--~~~~~DvIlIDEaQFfk~---~ve~~~~L~-~~gk~VI~~GL~~DF  129 (195)
T 1w4r_A           87 -Q--EALGVAVIGIDEGQFFPD---IVEFCEAMA-NAGKTVIVAALDGTF  129 (195)
T ss_dssp             -H--HHHTCSEEEESSGGGCTT---HHHHHHHHH-HTTCEEEEEEESBCT
T ss_pred             -H--hccCCCEEEEEchhhhHH---HHHHHHHHH-HCCCeEEEEeccccc
Confidence             1  235689999999942222   455556666 357777777777665

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.81  E-value=0.0016  Score=52.83  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+..+.|.||.|+||||+++.++..+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3456889999999999999999988754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.80  E-value=0.0039  Score=56.20  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ..+.|.||+|+||||+++.++...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            357899999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.80  E-value=0.014  Score=55.31  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      ...-.++++|.+|+|||||++.+.+.
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCC
Confidence            34567899999999999999999863

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.77  E-value=0.0012  Score=60.32  Aligned_cols=25  Identities=40%  Similarity=0.575  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+++|+||+||||||+...|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.77  E-value=0.0079  Score=53.82  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +..+.+.||.|+||||+++.++..+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3577788899999999999999876

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.76  E-value=0.0033  Score=60.54  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +..+.|.||.|+||||+++.++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4688999999999999999999877

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.75  E-value=0.019  Score=53.96  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      -.++++|..|+|||||++.|.+..
T Consensus        25 ~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           25 LRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEECCCCCHHHHHHHHHhhc
Confidence            468999999999999999998753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.74  E-value=0.00098  Score=67.86  Aligned_cols=57  Identities=12%  Similarity=0.202  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhCCCC--eEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         167 AAIAFNAINIAQKKNTD--IVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~--llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      .+..+-.||+++..+|+  ++|||||+   |+.....+++.|+++.+ .|.++++++||+.++
T Consensus       383 Ge~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHdl~~l  444 (842)
T 2vf7_A          383 GELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHDLDVI  444 (842)
T ss_dssp             HHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCHHHH
Confidence            33444459999999984  99999998   89999999999999965 588999999998743

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.74  E-value=0.0035  Score=52.65  Aligned_cols=38  Identities=26%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .+| .+.+.++||.||||..--++-...-.+.+|.+...
T Consensus        27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF   64 (196)
T 1g5t_A           27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF   64 (196)
T ss_dssp             CCC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence            345 56678889999999999888887778889999853

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.73  E-value=0.0016  Score=61.80  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.|.||+|+||||+++.|+....
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhC
Confidence            588999999999999999998864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.72  E-value=0.00096  Score=57.48  Aligned_cols=37  Identities=24%  Similarity=0.484  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC----CCeEEEe
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR----KKSVLLA  133 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~----~g~V~l~  133 (302)
                      .+|.++.|.||.||||||.++.|+..+...    +-+|.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~   63 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT   63 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence            468899999999999999999999988765    6666544

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.72  E-value=0.0048  Score=55.05  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +..+.|.||.|+||||+++.++..+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHh
Confidence            3568899999999999999998865

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=96.72  E-value=0.0041  Score=57.50  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .++.+.|..|+||||+...+|..+...+.+|.+.+.
T Consensus         3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~   38 (374)
T 3igf_A            3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL   38 (374)
T ss_dssp             EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence            467788999999999999999999888889999887

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.71  E-value=0.0018  Score=55.61  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEE
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLL  132 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l  132 (302)
                      .+|.++.|.|+.||||||+++.|+..+.. .+-+|.+
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~   55 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV   55 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence            46899999999999999999999999887 6656665

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.70  E-value=0.00078  Score=55.27  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            368999999999999999998865

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.69  E-value=0.01  Score=57.24  Aligned_cols=40  Identities=28%  Similarity=0.327  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      ..+.++.++|++||||||+.+.|+..+....-...+.+.|
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D   72 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG   72 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence            3457899999999999999999998886554444444444

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.68  E-value=0.00085  Score=54.26  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999865

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.68  E-value=0.0031  Score=63.60  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      ..+.|.||+|+|||++++.|+..+...+..+...
T Consensus       522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i  555 (758)
T 3pxi_A          522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRI  555 (758)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence            3688999999999999999999875444444333

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.68  E-value=0.0013  Score=57.03  Aligned_cols=27  Identities=22%  Similarity=0.161  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++-+++|.||.||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            357789999999999999999998765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.68  E-value=0.001  Score=55.98  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++|.||.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=96.66  E-value=0.013  Score=55.93  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|..|+|||||++.|.+.
T Consensus        34 ~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           34 LSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEEESCGGGTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36889999999999999999765

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.66  E-value=0.0023  Score=53.10  Aligned_cols=82  Identities=12%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc-cCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC-DTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK  179 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~-d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~  179 (302)
                      ++.|+|+.||||||+...++..    ++.+.+.+. ..+...-.+++..+..+....+.....+.+....    +.. ..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~----l~~-~~   71 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL----ITA-DL   71 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT----SCT-TS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHH----HHh-hc
Confidence            3679999999999999998854    345555443 2222222233444433333334333332332211    110 11


Q ss_pred             CCCCeEEEcCCC
Q psy2881         180 KNTDIVIVDTSG  191 (302)
Q Consensus       180 ~~~~llllDEP~  191 (302)
                      ...+.+|+|.-|
T Consensus        72 ~~~~~VLvDclt   83 (180)
T 1c9k_A           72 APDDAILLECIT   83 (180)
T ss_dssp             CTTCEEEEECHH
T ss_pred             ccCCeEEEcCHH
Confidence            223799999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.65  E-value=0.0012  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.64  E-value=0.0012  Score=53.44  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++++|.|+.||||||+.+.|+..+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.63  E-value=0.0012  Score=60.29  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++.++.|+||+||||||+...||..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            56799999999999999999999765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.61  E-value=0.0044  Score=63.37  Aligned_cols=26  Identities=35%  Similarity=0.446  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      ..+.|+||+|+||||+++.++..+..
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            35789999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.60  E-value=0.0012  Score=55.70  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++|+||.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.60  E-value=0.0069  Score=58.58  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -..++|+|+.|||||||+..|++.
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~   36 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLF   36 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhh
Confidence            357999999999999999999743

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.57  E-value=0.0014  Score=55.95  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999866

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.55  E-value=0.0022  Score=50.71  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .-+.|.||+|+|||++++.|+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CcEEEECCCCccHHHHHHHHHHhC
Confidence            347899999999999999887754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.54  E-value=0.0013  Score=55.65  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +|-++.|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.54  E-value=0.0013  Score=51.92  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.53  E-value=0.0013  Score=52.23  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999999863

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.53  E-value=0.0013  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.53  E-value=0.0059  Score=54.65  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++.|.||.|+||||+++.++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc
Confidence            689999999999999999998654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.52  E-value=0.009  Score=53.44  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +.-+.|.||+|+|||++++.|+......++.....++
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~   61 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNC   61 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEEC
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeC
Confidence            3458899999999999999999876554444433333

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.51  E-value=0.0046  Score=51.83  Aligned_cols=36  Identities=42%  Similarity=0.635  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      +|+|=|+-||||||.++.|+..+...+-+|.+...+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP   37 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP   37 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            467889999999999999999998877777765443

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.49  E-value=0.0017  Score=58.56  Aligned_cols=25  Identities=40%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.+++|+||+||||||+...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            5689999999999999999998765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.46  E-value=0.0018  Score=57.39  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      ..+.+++|.|+.||||||+.+.|+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467999999999999999999984

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.45  E-value=0.002  Score=55.22  Aligned_cols=28  Identities=36%  Similarity=0.413  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ..+..+.|+|+.||||||+.+.|+..+.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457899999999999999999998763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.45  E-value=0.0016  Score=51.53  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.|||||||++.+.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999886

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.45  E-value=0.0032  Score=55.65  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      .++++.|..|+||||+...||..+...+.+|.+.+.|++.
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~   42 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4677889999999999999999998888899999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.44  E-value=0.002  Score=51.82  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +.-.++++|+.|||||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999763

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.44  E-value=0.0016  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.43  E-value=0.0016  Score=51.86  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.||||||+++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999986

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.43  E-value=0.0016  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.42  E-value=0.0016  Score=51.76  Aligned_cols=21  Identities=29%  Similarity=0.640  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.||||||+++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            478999999999999999986

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=96.42  E-value=0.013  Score=55.86  Aligned_cols=23  Identities=30%  Similarity=0.231  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|..++|||||++.|.+.
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~   42 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEI   42 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHHCC
Confidence            36899999999999999999764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.42  E-value=0.0084  Score=54.41  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      +..+.|.||.|+||||+++.++..+...
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3478899999999999999999887643

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.41  E-value=0.0018  Score=61.49  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL  132 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l  132 (302)
                      .+.+|+.++|+||+|+|||||++.|+.......+.+.+
T Consensus       147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            34578999999999999999999999887654444444

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.41  E-value=0.002  Score=58.44  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.++.|+||+||||||+...|+..+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3589999999999999999999865

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.41  E-value=0.0053  Score=52.35  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+|.++.|-|+.||||||.++.|+..+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36889999999999999999999998875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.41  E-value=0.0016  Score=52.20  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+-
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            5889999999999999998763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.40  E-value=0.002  Score=54.38  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999866

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.40  E-value=0.0013  Score=52.28  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4789999999999999998753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=96.39  E-value=0.014  Score=58.21  Aligned_cols=24  Identities=33%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -..++|+|+.|+|||||+..|...
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~   35 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYY   35 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.39  E-value=0.0018  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.39  E-value=0.0018  Score=51.44  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.39  E-value=0.002  Score=54.33  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=25.5

Q ss_pred             CCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          90 KPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        90 ~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ...-+.+ .|..++|+||+|+|||||...|+...
T Consensus        26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           26 HGVLVDI-YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             ESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             eEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3333443 57889999999999999999987643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=96.39  E-value=0.011  Score=58.95  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -..++|+|+.|+|||||++.|.+.
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~   33 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYY   33 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.39  E-value=0.0021  Score=54.48  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      ++.|+||.||||+|..+.|+..+    |=+.+...|..|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~----g~~~istGdllR   36 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK----GFVHISTGDILR   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH----CCEEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHHH
Confidence            57899999999999999999876    445566556554

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.38  E-value=0.0023  Score=57.62  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.+++|+||+||||||+...|+..+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            35789999999999999999998765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.38  E-value=0.0098  Score=57.78  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .+.+++|.||.|+|||||+..++..
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHhc
Confidence            4679999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.38  E-value=0.0018  Score=52.12  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.||||||+++.+.+-
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36889999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.37  E-value=0.0018  Score=51.70  Aligned_cols=22  Identities=41%  Similarity=0.739  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.36  E-value=0.0019  Score=51.94  Aligned_cols=22  Identities=23%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.35  E-value=0.0018  Score=53.13  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .-.++++|+.|||||||++.+.+-
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347899999999999999999863

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.35  E-value=0.002  Score=51.12  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.|||||||++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999986

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=96.34  E-value=0.06  Score=46.84  Aligned_cols=162  Identities=12%  Similarity=0.161  Sum_probs=83.3

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHhHhhhCCCeEEEec-----ccCCChhHHHHHHHhcccCC--CCeeecCC---------
Q psy2881         100 FVIMIVGVN-GVGKTTTIGKLANYFKKRKKSVLLAA-----CDTFRAAAYEQLLILGKYND--VPVISEKK---------  162 (302)
Q Consensus       100 ~ii~lvGpn-GsGKTTll~~Lag~~~~~~g~V~l~~-----~d~~~~~~~~ql~~~~~~~~--~~~~~~~~---------  162 (302)
                      ..+.|.|.. |+||||+...|+..+...+.+|.+.-     ..... .....++.......  -++.....         
T Consensus        27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~  105 (251)
T 3fgn_A           27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-DDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEH  105 (251)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-CHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-HHHHHHHHHcCCCCCCCCeeECCCCChHHHHHH
Confidence            568889965 99999999999999998887887652     11100 11122222221100  01111110         


Q ss_pred             ----CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH-HHHHHHHHHHHHhchhhccccceeehhhcCCCCh--h
Q psy2881         163 ----ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS-HLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ--N  232 (302)
Q Consensus       163 ----~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~-~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~--~  232 (302)
                          ..+. ..+.+.+. .+..++|++|+|.|+   ++-+.. ..   ..++++..+       ..+.+|.+...+.  .
T Consensus       106 ~~~~~~~~-~~i~~~~~-~l~~~~D~vlIEGagGl~~pl~~~~~~---~adla~~l~-------~pVILV~~~~~g~i~~  173 (251)
T 3fgn_A          106 AGMALPAR-DQIVRLIA-DLDRPGRLTLVEGAGGLLVELAEPGVT---LRDVAVDVA-------AAALVVVTADLGTLNH  173 (251)
T ss_dssp             TTCCCCCH-HHHHHHHH-TTCCTTCEEEEECSSSTTCEEETTTEE---HHHHHHHTT-------CEEEEEECSSTTHHHH
T ss_pred             cCCCCCCH-HHHHHHHH-HHHhcCCEEEEECCCCCcCCcCcccch---HHHHHHHcC-------CCEEEEEcCCCccHHH
Confidence                0111 12223232 245789999999996   331211 01   112333222       2344555555443  2


Q ss_pred             HHHHHHHH-HhhcCCCeEEEecCCCCC--chhHHHHhhhHhCCceE
Q psy2881         233 TLSQIKEF-SKILRITGLIITKLDGTT--KGGILAAIAKKYSIPLY  275 (302)
Q Consensus       233 ~~~~~~~f-~~~~~~~~~i~tk~d~~~--~~g~~~~~~~~~~~pv~  275 (302)
                      .+...+.+ .....+.++|++++.+..  ........+.+. +|+.
T Consensus       174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpvL  218 (251)
T 3fgn_A          174 TKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMVR  218 (251)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCEE
Confidence            33333333 335677899999986432  223345556666 8866

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.34  E-value=0.0011  Score=60.94  Aligned_cols=27  Identities=33%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhhCCC
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKKRKK  128 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~~~g  128 (302)
                      ++|+|++|+|||||++.|.+......+
T Consensus        40 I~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTTCCC----
T ss_pred             EEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            489999999999999999876443333

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.33  E-value=0.002  Score=51.84  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.|||||||++.+.+-
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36889999999999999999874

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=96.33  E-value=0.0029  Score=52.08  Aligned_cols=54  Identities=13%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHh----CCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         166 PAAIAFNAINIAQK----KNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       166 ~~~~~~~~la~al~----~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                      ..+...-+||++++    .+|+++|+|||+   |+.+...+.+.|+++.+  +.++++++|+.
T Consensus        67 gGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~  127 (173)
T 3kta_B           67 GGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD  127 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH
Confidence            34455566888886    557999999997   99999999999988754  34566777864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.32  E-value=0.0022  Score=56.88  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++.|.|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999873

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.32  E-value=0.0024  Score=53.43  Aligned_cols=26  Identities=35%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ...+++|+|+.||||||+.+.|+..+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.32  E-value=0.0021  Score=51.04  Aligned_cols=21  Identities=19%  Similarity=0.518  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.||||||+++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.32  E-value=0.0019  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+-
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6889999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.31  E-value=0.0021  Score=52.46  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .-.++++|++|||||||++.+.+-
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999998763

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.30  E-value=0.006  Score=55.01  Aligned_cols=52  Identities=23%  Similarity=0.274  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHHHHhhc--cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          69 NTEQVRNVLHNLLVNLLKS--LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        69 ~~~~~~~~l~~~l~~~l~~--~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      ........+...|...+.+  .++...+.+ .|.-++|.|++|+||||++..|..
T Consensus       113 ~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          113 ATTQLMSRLTTFLEHELARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             CHHHHHHHHHHHHHHHTCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            3444455566666665543  456666666 688899999999999999988876

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.29  E-value=0.0019  Score=52.50  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.||||||+++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999999863

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.28  E-value=0.0021  Score=56.82  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++|+|++|||||||++.++|.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999985

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.27  E-value=0.0022  Score=52.57  Aligned_cols=22  Identities=27%  Similarity=0.658  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++|+|+.|||||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.27  E-value=0.0018  Score=52.13  Aligned_cols=21  Identities=33%  Similarity=0.711  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.|||||||++.+.+
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999875

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.26  E-value=0.013  Score=55.39  Aligned_cols=26  Identities=35%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      ...-.+..+.|+.|+||||++..++.
T Consensus       158 ~~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          158 VSSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cccccEEEEEcCCCCCHHHHHHHHhc
Confidence            35568999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.26  E-value=0.0023  Score=52.26  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.||||||+++.+++-
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            36889999999999999999863

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.26  E-value=0.0022  Score=54.10  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.25  E-value=0.0023  Score=51.90  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999863

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.25  E-value=0.0045  Score=52.25  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      |.+|+|=|+-||||||.++.|+..+. .+.+|.+.-.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~e   37 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTRE   37 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEES
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeC
Confidence            57899999999999999999999886 3556665433

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.25  E-value=0.0029  Score=54.44  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +|.+++|.|+.||||||+++.|+..+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.25  E-value=0.0023  Score=51.30  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.|||||||++.+.+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.24  E-value=0.0024  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++|+|+.|||||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.23  E-value=0.0025  Score=50.50  Aligned_cols=21  Identities=43%  Similarity=0.583  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhH
Q psy2881         102 IMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++++|+.||||||+++.+.+-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999763

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.23  E-value=0.0054  Score=58.36  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .-+.|+||+|+||||+++.|+..+.
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999874

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.23  E-value=0.0026  Score=58.65  Aligned_cols=22  Identities=41%  Similarity=0.581  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -.++|+|.+|||||||++.|++
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999998

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.22  E-value=0.0025  Score=52.19  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.|||||||++.+.+-
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.22  E-value=0.0019  Score=52.35  Aligned_cols=23  Identities=43%  Similarity=0.755  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      +.-.++++|++|||||||++.+.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999998876

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.21  E-value=0.0036  Score=49.84  Aligned_cols=23  Identities=39%  Similarity=0.671  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .-.++++|+.|||||||++.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999999965

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.21  E-value=0.0026  Score=51.14  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5889999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.21  E-value=0.0025  Score=53.43  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      -.++++|+.|||||||++.+++..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.20  E-value=0.0026  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.|||||||++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            36889999999999999999863

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.19  E-value=0.0052  Score=56.19  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++..+.|.||+|+||||+++.|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34568899999999999999999887

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.19  E-value=0.0027  Score=50.95  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.||||||+++.+.+-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36889999999999999999863

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.18  E-value=0.0078  Score=56.86  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .-+.|+||+|+||||+.+.||..+..
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            34789999999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.17  E-value=0.0028  Score=52.00  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -.++|+|++|||||||++.+.+
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3688999999999999987765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.17  E-value=0.0078  Score=57.90  Aligned_cols=41  Identities=12%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CC-CeEEEecccC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RK-KSVLLAACDT  137 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~-g~V~l~~~d~  137 (302)
                      +.|.++.|+|++||||||+.+.|+..+.. .+ ..+.+.+.|.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            46789999999999999999999999875 43 3455666554

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.16  E-value=0.0028  Score=51.02  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6889999999999999998764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.16  E-value=0.07  Score=53.69  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=22.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.-+ .++++|..+|||||+++.|.|.-
T Consensus        49 i~lp-~I~vvG~~saGKSSllnaL~g~~   75 (772)
T 3zvr_A           49 LDLP-QIAVVGGQSAGKSSVLENFVGRD   75 (772)
T ss_dssp             GCCS-EEEEEECTTTCHHHHHHHHHSSC
T ss_pred             CCCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence            3344 57899999999999999999964

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.15  E-value=0.0028  Score=51.42  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -.++++|+.|||||||++.+.+-
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999999764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.15  E-value=0.024  Score=57.06  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ..+.|.||+|+|||++++.|+..+
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh
Confidence            468899999999999999999987

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.14  E-value=0.0028  Score=51.64  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++++|+.|||||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	2e-69
d1okkd2	207	c.37.1.10 (D:97-303) GTPase domain of the signal r	2e-65
d1vmaa2	213	c.37.1.10 (A:82-294) GTPase domain of the signal r	1e-64
d1j8yf2	211	c.37.1.10 (F:87-297) GTPase domain of the signal s	5e-57
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	6e-56
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	8e-29
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-28
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	7e-17
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-15
d2qy9a1	84	a.24.13.1 (A:201-284) Signal recognition particle	4e-12
d1vmaa1	81	a.24.13.1 (A:1-81) Signal recognition particle rec	4e-10
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	1e-07
d1okkd1	58	a.24.13.1 (D:21-78) Signal recognition particle re	6e-07
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	2e-04
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	3e-04
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	3e-04
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	3e-04
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	3e-04
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	5e-04
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	9e-04
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	0.001
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.001
d1gsia_	208	c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tu	0.002
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score =  212 bits (540), Expect = 2e-69
 Identities = 111/211 (52%), Positives = 158/211 (74%)

Query: 91  PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILG 150
           PL  +   PFVI++VGVNGVGKTTTIGKLA  F+++ KSV+LAA DTFRAAA EQL + G
Sbjct: 1   PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWG 60

Query: 151 KYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVI 210
           + N++PVI++    D A++ F+AI  A+ +N D++I DT+GRL  +SHLM ELKKI +V+
Sbjct: 61  QRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVM 120

Query: 211 EKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKY 270
           +K   E P+E+ L ID +TGQN +SQ K F + + +TG+ +TKLDGT KGG++ ++A ++
Sbjct: 121 KKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQF 180

Query: 271 SIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301
            IP+ +IG+GE+IEDL+ F A DF+ AL  +
Sbjct: 181 GIPIRYIGVGERIEDLRPFKADDFIEALFAR 211

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

 Score =  202 bits (514), Expect = 2e-65
 Identities = 98/202 (48%), Positives = 137/202 (67%)

Query: 98  KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPV 157
           K  V+++VGVNGVGKTTTI KL  Y++   K V+  A DTFRAA   QL   GK   +PV
Sbjct: 5   KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPV 64

Query: 158 ISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFEL 217
           I   + TDPAA+A++A+   + +  D++ VDT+GRL T+ +LM ELKK+K+ I K   E 
Sbjct: 65  IQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEE 124

Query: 218 PYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFI 277
           P E++L++D  TGQN L Q K+F + + +TG+I+TKLDGT KGG+L  I +   +P+ F+
Sbjct: 125 PKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFV 184

Query: 278 GIGEKIEDLQIFNAVDFVNALL 299
           G+GE  +DLQ F+   FV ALL
Sbjct: 185 GVGEGPDDLQPFDPEAFVEALL 206

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score =  200 bits (509), Expect = 1e-64
 Identities = 113/213 (53%), Positives = 149/213 (69%)

Query: 89  EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148
           +  L      PFVIM+VGVNG GKTT+ GKLA  F    KSV+LAA DTFRAAA EQL I
Sbjct: 1   DTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKI 60

Query: 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKK 208
            G+     VIS  +  DPAA+AF+A+  A  +N D+VI+DT+GRL T+ +LM EL+K+ +
Sbjct: 61  WGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHR 120

Query: 209 VIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK 268
           V++KKI + P+E  L+ID  TGQN L Q K F + + +TG+I+TKLDGT KGGI  AIA+
Sbjct: 121 VVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITLAIAR 180

Query: 269 KYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ 301
           +  IP+ FIG+GEK EDL+ F+   FV  LL++
Sbjct: 181 ELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE 213

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

 Score =  180 bits (458), Expect = 5e-57
 Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 8/216 (3%)

Query: 89  EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148
           ++P +     P+VIM+VGV G GK TT GKLA ++KK+   V L   D +R AA EQL  
Sbjct: 2   KEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ 61

Query: 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMR--ELKKI 206
           LG+   VPV  E    D   IA   +     +  +I+IVDT+GR           E+K I
Sbjct: 62  LGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNI 121

Query: 207 KKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAI 266
            + I+      P E+ L+ID + GQ       +F++  +I  +IITK+DGT KGG   + 
Sbjct: 122 YEAIK------PDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSA 175

Query: 267 AKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN 302
                  + FIG GEKI++L++FN   FV  L + +
Sbjct: 176 VAATGATIKFIGTGEKIDELEVFNPRRFVARLHHHH 211

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score =  177 bits (451), Expect = 6e-56
 Identities = 78/211 (36%), Positives = 113/211 (53%), Gaps = 7/211 (3%)

Query: 89  EKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI 148
           E  L   K    +  +VG+ G GKTTT  KLA Y+K + +  LL A DT R AA EQL +
Sbjct: 1   EARLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL 59

Query: 149 LGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKK 208
           LG+   VPV+       P +I       A+ +  D+++VDT+GRL     LM EL ++K+
Sbjct: 60  LGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 119

Query: 209 VIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAK 268
           V+       P E+ L++D  TGQ  LS  + F + + +TGL++TKLDG  +GG   +   
Sbjct: 120 VLG------PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARH 173

Query: 269 KYSIPLYFIGIGEKIEDLQIFNAVDFVNALL 299
               P+YF G+ EK E L+ F        +L
Sbjct: 174 VTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 204

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score =  106 bits (266), Expect = 8e-29
 Identities = 24/198 (12%), Positives = 68/198 (34%), Gaps = 11/198 (5%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
           V+++ GV GVG TT+     +  +K   +  + +  +      ++  ++   + +  +  
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYE 220
           +       +A     IA+      V VDT   +ST    +  L          + EL  +
Sbjct: 63  ETQKRIQKMAGR--KIAEMAKESPVAVDTHSTVSTPKGYLPGLPSW------VLNELNPD 114

Query: 221 IFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIG 280
           + ++++    +  + ++ + +++  +      +           +        +  +   
Sbjct: 115 LIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNR 174

Query: 281 EKIEDLQIFNAVDFVNAL 298
             + D       +  N L
Sbjct: 175 NGLLD---QAVEELTNVL 189

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score =  104 bits (260), Expect = 8e-28
 Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 9/196 (4%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSV-LLAACDTFRAAAYEQLLILGKYNDVPVIS 159
           + ++ G+ GVGK+T + K+      +  +  ++   D   A A +      +     +  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 160 EKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPY 219
           EK+       A      A+      + +DT   + T S  +  L              P 
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPS-----YVITEINPS 117

Query: 220 EIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGI 279
            IFL+        +  +          +   +             A A      +  I  
Sbjct: 118 VIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVN 177

Query: 280 GEKIEDL---QIFNAV 292
            E    +   +I  ++
Sbjct: 178 VEGDPSIAANEIIRSM 193

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.4 bits (184), Expect = 7e-17
 Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 22/217 (10%)

Query: 99  PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVI 158
           P +I++VG+   GKT    KL  Y               +R    +       +      
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 159 -SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMREL----------KKIK 207
             + +     A   +      ++   + + D +     +  ++              +  
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 208 KVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDGTTKGGILAAIA 267
            V  + I     ++ L       +++    ++F + +         LD      +  +  
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDL--SYI 179

Query: 268 KKYSIPLYFIGIGEKIEDLQIFNAVD--FVNALLNQN 302
           K        + +G+     ++ + +    V  L+N +
Sbjct: 180 K-------IMDVGQSYVVNRVADHIQSRIVYYLMNIH 209

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 1e-15
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 29/177 (16%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF---------------------- 138
            + + G  GVGKTT I K +   K     V     +                        
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62

Query: 139 RAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSH 198
           R                 V+        A       + +      + ++D  G++   S 
Sbjct: 63  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122

Query: 199 LMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLD 255
           L  +         ++    P  I L          L+ ++E      +    +TK +
Sbjct: 123 LFIQAV-------RQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKEN 172

>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]} Length = 84

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (143), Expect = 4e-12
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 12 SLSKTACNL----KSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL 67
          SL KT  NL     SL   KKID +L+ ELE  LL ADVG ETT+ ++  L +    K+L
Sbjct: 2  SLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQL 61

Query: 68 FNTEQVRNVLHNLLVNLLKSLEK 90
           + E +  +L   +  +L  +++
Sbjct: 62 RDAEALYGLLKEEMGEILAKVDE 84

>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]} Length = 81

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 5  WITRLKESLSKTACN----LKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKK 60
              LK+ L KT       +  L+  KK+D     ELE  L++ADVG ETT+++L  L++
Sbjct: 3  LFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEE 62

Query: 61 IIYSKKLFNTEQVRNVL 77
                    E +  +L
Sbjct: 63 KDGDALESLKEIILEIL 79

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 22/201 (10%), Positives = 54/201 (26%), Gaps = 16/201 (7%)

Query: 68  FNTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRK 127
           F  +Q  N L++ L  L++  +         P   ++ G  G GKT+    +    +   
Sbjct: 6   FTDKQFENRLNDNLEELIQGKKAV-----ESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 60

Query: 128 KSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKNTDIVIV 187
             +     DTF+        ++  Y     + +        +    I+    +  ++VI 
Sbjct: 61  IVI---DNDTFKQQHPNFDELVKLY--EKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115

Query: 188 DTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRIT 247
            T             L+      +  +  +P     +               ++      
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYL------GTIERYETMYADDPMTA 169

Query: 248 GLIITKLDGTTKGGILAAIAK 268
                +        +   +  
Sbjct: 170 RATPKQAHDIVVKNLPTNLET 190

>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]} Length = 58

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Thermus aquaticus [TaxId: 271]

 Score = 43.5 bits (103), Expect = 6e-07
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 28 KIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLK 86
             + +  ELE  LL ADVG   T+ +L E++           + ++  +   LV +L+
Sbjct: 6  GNLEEVLEELEMALLAADVGLSATEEILQEVRASG-------RKDLKEAVKEKLVGMLE 57

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 4/126 (3%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
              I G  G+GK+TT   L     +  K V++  CD    +      ++        I E
Sbjct: 4   QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADS----TRLILHSKAQNTIME 59

Query: 161 KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYE 220
                         ++ +     +  V++ G         R +      +E++       
Sbjct: 60  MAAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDL 119

Query: 221 IFLIID 226
            F+  D
Sbjct: 120 DFVFYD 125

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 84  LLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
            ++ L   ++ +  +   + I GV GVGK+TTI  L +        V + A D   
Sbjct: 36  AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 91

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 99  PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
           P  +   G  GVGKT+     A    ++ K VLL + D
Sbjct: 8   PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 101 VIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA 142
            I +  G  G GKTT    L     +    V +   D   A  
Sbjct: 3   TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANL 45

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%)

Query: 84  LLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR 139
           L   L   ++        + + G  G GK+T +        +    V + A D   
Sbjct: 39  LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 94

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
           +IM++G  GVGKTT    +A         V L   D
Sbjct: 22  LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 38.0 bits (87), Expect = 9e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD 136
            + I G  G+GK+TT   L +      K++++  CD
Sbjct: 3   QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 101 VIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA 142
           +I IV G  G GKTT    L+     R + VL    D   A  
Sbjct: 4   IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANL 46

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 14/164 (8%), Positives = 40/164 (24%), Gaps = 14/164 (8%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE 160
           V  +VG    GKTT + K      +    V                 +    ++      
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62

Query: 161 KKITDPAAIAFNA----------INIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVI 210
             +     +  +           + +      D+V+V+   +        + +    +  
Sbjct: 63  TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQ----ERHPKVVLVRSEED 118

Query: 211 EKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKL 254
              +  L     +I            +   +        ++ ++
Sbjct: 119 WASLQHLANIRAVIAWEPLEGPLAHPVFSLADDDEYIPWLMNEV 162

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLL 132
           I I GV+G GK T + KL+  F+   +SV  
Sbjct: 3   IAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 9/46 (19%), Positives = 14/46 (30%)

Query: 101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL 146
           ++     +G GKTT + KL      R     L           +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPG 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d2qy9a2	211	GTPase domain of the signal recognition particle r	100.0
d1vmaa2	213	GTPase domain of the signal recognition particle r	100.0
d1okkd2	207	GTPase domain of the signal recognition particle r	100.0
d1j8yf2	211	GTPase domain of the signal sequence recognition p	100.0
d1ls1a2	207	GTPase domain of the signal sequence recognition p	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.94
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.93
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.93
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.93
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.92
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.91
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.91
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.9
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.9
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.85
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.48
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.13
d1vmaa1	81	Signal recognition particle receptor, FtsY {Thermo	99.13
d2qy9a1	84	Signal recognition particle receptor, FtsY {Escher	99.0
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.52
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.44
d1ls1a1	88	Signal sequence recognition protein Ffh {Thermus a	98.44
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.4
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.36
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.31
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	98.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.24
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	98.2
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.19
d1j8yf1	84	Signal sequence recognition protein Ffh {Archaeon	98.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.11
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	98.04
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	98.0
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.99
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.94
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.88
d1okkd1	58	Signal recognition particle receptor, FtsY {Thermu	97.85
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.84
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.84
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.82
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.81
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.79
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.77
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.76
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.76
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.76
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.74
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.7
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.68
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.66
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.63
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.63
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.63
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.58
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.57
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.56
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.56
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.54
d1wgwa_	99	Signal recognition particle 54 kDa protein, SRP54	97.53
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.53
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.53
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.52
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.51
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.51
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.5
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.5
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.49
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.45
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.38
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.38
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.37
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.36
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.35
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.34
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.34
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.33
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.33
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.3
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.3
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.29
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.26
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.24
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.24
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.22
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.21
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.16
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.16
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.13
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.13
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.12
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.12
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.12
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.1
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.08
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.08
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.06
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.02
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.02
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.01
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.01
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.0
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.0
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.99
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.98
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.95
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.94
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.92
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.91
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.91
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.89
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.87
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.87
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.86
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.85
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.81
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.81
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.78
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.78
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.78
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.77
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.76
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.74
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.73
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.73
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.71
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.7
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.7
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.68
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.63
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.61
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.58
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.58
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.55
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.51
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.51
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.5
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.5
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.4
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.37
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.33
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.33
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.31
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.28
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.28
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.25
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.24
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.19
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.14
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.13
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.13
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.1
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.07
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.05
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.05
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.02
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.02
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.01
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.01
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.94
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.88
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.87
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.86
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.81
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.79
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.75
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.73
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.7
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.69
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.68
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.66
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.64
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.64
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.64
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.59
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.58
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.58
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.57
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.56
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.52
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.51
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.47
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.46
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.36
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.32
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.26
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.25
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.22
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.11
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.1
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.08
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.05
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.02
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.99
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.87
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.86
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.77
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.68
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.67
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.66
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.66
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.45
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.4
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.25
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.97
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.92
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.82
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.81
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.71
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.7
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.7
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.64
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.44
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.18
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.15
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.91
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.62
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.12
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.47
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.27
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	91.01
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	90.99
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.91
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.83
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	90.56
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.32
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.22
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.16
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.0
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.98
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	89.62
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.31
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.96
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	87.85
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.83
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.82
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.53
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.51
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	87.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.39
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	86.74
d1tf5a3	273	Translocation ATPase SecA, nucleotide-binding doma	86.63
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.59
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	85.83
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.98
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	84.07
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.64
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.76
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	82.29
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.13
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	80.97
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	80.77
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	80.4

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-44  Score=304.81  Aligned_cols=210  Identities=52%  Similarity=0.835  Sum_probs=195.6

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHH
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF  171 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  171 (302)
                      ++++-+++.+++++|||||||||++.+||..+...+.+|.+...|+||.++.+|++.|++.++++++....+.++...++
T Consensus         2 l~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~   81 (211)
T d2qy9a2           2 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF   81 (211)
T ss_dssp             CCCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHH
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHH
Confidence            45666678999999999999999999999999988889999999999999999999999999999999888889888888


Q ss_pred             HHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEE
Q psy2881         172 NAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLII  251 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~  251 (302)
                      +.+..+..++.|++|+||||+.+.+..++++|+++.+..+......+++.++|++++.+++.+.++..|+..++++++|+
T Consensus        82 ~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lIl  161 (211)
T d2qy9a2          82 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITL  161 (211)
T ss_dssp             HHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEEE
T ss_pred             HHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCceEEE
Confidence            87777788999999999999999999999999999887665555578999999999999999999999999999999999


Q ss_pred             ecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         252 TKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       252 tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      ||+||++++|.+++++.++++||.|+|+||+|+||++|+|++|+++|||.
T Consensus       162 TKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~~~~llg~  211 (211)
T d2qy9a2         162 TKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFAR  211 (211)
T ss_dssp             ECCTTCTTTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC
T ss_pred             eecCCCCCccHHHHHHHHHCCCEEEEeCCCCcccCccCCHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999984

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7e-43  Score=299.65  Aligned_cols=210  Identities=54%  Similarity=0.806  Sum_probs=195.4

Q ss_pred             cceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHH
Q psy2881          92 LIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAF  171 (302)
Q Consensus        92 i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  171 (302)
                      +++.-.++.+++++|||||||||++++||.++...+.+|.+.+.|++|.++.+|++.|++.++++++....+.++.....
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~   83 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAF   83 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHH
Confidence            45666788999999999999999999999999888899999999999999999999999999999999888888887777


Q ss_pred             HHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEE
Q psy2881         172 NAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLII  251 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~  251 (302)
                      ...+.+...+.|+||+|+||+.+.+.++++++.++.+..+......+|+.++|++++.+++++.+...|+..++++++|+
T Consensus        84 ~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~  163 (213)
T d1vmaa2          84 DAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIIL  163 (213)
T ss_dssp             HHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             HHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCceEEE
Confidence            77777888999999999999999999999999999887665555568999999999999999999988888999999999


Q ss_pred             ecCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         252 TKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       252 tk~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      ||+||+.++|.+++++..+++||+|+|+||+|+||++|+|++|+++|||.
T Consensus       164 TKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~l~~~llge  213 (213)
T d1vmaa2         164 TKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE  213 (213)
T ss_dssp             ECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTCC
T ss_pred             ecccCCCcccHHHHHHHHHCCCEEEEeCCCCcccCccCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999984

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.6e-41  Score=290.19  Aligned_cols=203  Identities=48%  Similarity=0.751  Sum_probs=189.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      .++.+++++||+||||||++.+||.++...+.+|.+...|++|.++.+|++.|++.++++++......++...+++.+..
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            35789999999999999999999999998889999999999999999999999999999999888888988888887777


Q ss_pred             HHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCC
Q psy2881         177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDG  256 (302)
Q Consensus       177 al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~  256 (302)
                      +..++.|+||+|+||+.+...++++++.++.+..+......+++.++|++++.+++.+.+...|++.++++++|+||+||
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDe  163 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG  163 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCCceEEEeccCC
Confidence            77889999999999999999999999999987765555567899999999999999999999999999999999999999


Q ss_pred             CCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhc
Q psy2881         257 TTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALL  299 (302)
Q Consensus       257 ~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~  299 (302)
                      ++++|.+++++..+++||+|+|+||+.+||++|+|++|+++||
T Consensus       164 t~~~G~~l~~~~~~~~Pi~~i~~Gq~p~Dl~~~~~~~l~~~ll  206 (207)
T d1okkd2         164 TAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALL  206 (207)
T ss_dssp             SCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHCCCEEEEeCCCChHhCccCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999997

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=100.00  E-value=2.5e-40  Score=283.28  Aligned_cols=201  Identities=39%  Similarity=0.588  Sum_probs=179.2

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      .-+.+.+++|+||+||||||++.+||.+++..+.+|.+.+.|++|.++.+|++.|++.++++++......++.....+++
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~   87 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV   87 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHH
Confidence            33568999999999999999999999999988899999999999999999999999999999999888888888888888


Q ss_pred             HHHHhCCCCeEEEcCCCCccch--HHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEe
Q psy2881         175 NIAQKKNTDIVIVDTSGRLSTQ--SHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIIT  252 (302)
Q Consensus       175 a~al~~~~~llllDEP~d~~~~--~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~t  252 (302)
                      ..+...+.+++|+|+||+.+..  ...++++.++.+.      +.+++.++|++++.+++.+.+...|+...+++++|+|
T Consensus        88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~------~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~T  161 (211)
T d1j8yf2          88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA------IKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIIT  161 (211)
T ss_dssp             HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHH------HCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEE
T ss_pred             HHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhh------cCCceEEEEEecccCcchHHHHhhhhcccCcceEEEe
Confidence            8888899999999999965544  3456777777654      3478999999999999999999889889999999999


Q ss_pred             cCCCCCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         253 KLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       253 k~d~~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      |+||+.++|.+++++.+.++|+.|+|+||+|+||++|+|++|+++|||.
T Consensus       162 KlDet~~~G~~l~~~~~~~lPi~~it~Gq~v~DL~~~~~~~l~~~ll~~  210 (211)
T d1j8yf2         162 KMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH  210 (211)
T ss_dssp             CTTSCSCHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred             cccCCCcccHHHHHHHHHCcCEEEEeCCCCcccCccCCHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999984

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.1e-39  Score=279.00  Aligned_cols=199  Identities=38%  Similarity=0.580  Sum_probs=179.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      +.+.+++|+|||||||||++++||.++...+.+|.+.+.|++|.++.+|++.|++.++++++......++....+.+...
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~   87 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK   87 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence            35679999999999999999999999998889999999999999999999999999999999988888887777777667


Q ss_pred             HHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCCCeEEEecCCC
Q psy2881         177 AQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRITGLIITKLDG  256 (302)
Q Consensus       177 al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~~~~i~tk~d~  256 (302)
                      +...+.|++|+|+||+.+.+...+++|.++.+..      .+++.++|++++.+++++.+++.|++.++++++|+||+|+
T Consensus        88 ~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~------~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDe  161 (207)
T d1ls1a2          88 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDG  161 (207)
T ss_dssp             HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH------CCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred             HhhccCcceeecccccchhhhhhHHHHHHHHhhc------CCceEEEEeccccchhHHHHHHHHHhhCCCCeeEEeecCc
Confidence            7788999999999999999999999999987653      4789999999999999999999999999999999999999


Q ss_pred             CCchhHHHHhhhHhCCceEEEecCCCCCcCccCChHHHHHHhccC
Q psy2881         257 TTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQ  301 (302)
Q Consensus       257 ~~~~g~~~~~~~~~~~pv~~~~~gq~v~dl~~~~~~~~~~~l~~~  301 (302)
                      +.++|.+++++..+++||+|+++||..|||++|+|++|+++|||.
T Consensus       162 ~~~~G~~l~~~~~~~~Pi~~i~~Gq~pedl~~~~~~~l~~~lLG~  206 (207)
T d1ls1a2         162 DARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM  206 (207)
T ss_dssp             CSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTC
T ss_pred             cccchHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence            999999999999999999999999977999999999999999983

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.9e-28  Score=211.62  Aligned_cols=137  Identities=18%  Similarity=0.137  Sum_probs=105.4

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH-------HhcccCCC----C
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL-------ILGKYNDV----P  156 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~-------~~~~~~~~----~  156 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+..+       +..|...+    .
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t   99 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT   99 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCcc
Confidence            689999999999999999999999999999999999999999999999987654433211       11111110    0


Q ss_pred             e--------ee-cCCC------------------------------CCHHHHHHHHHHHHHhCCCCeEEEcCCC---Ccc
Q psy2881         157 V--------IS-EKKI------------------------------TDPAAIAFNAINIAQKKNTDIVIVDTSG---RLS  194 (302)
Q Consensus       157 ~--------~~-~~~~------------------------------~~~~~~~~~~la~al~~~~~llllDEP~---d~~  194 (302)
                      +        .. ....                              ..-.+..+-+||||++.+|++||+||||   |+.
T Consensus       100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~  179 (230)
T d1l2ta_         100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK  179 (230)
T ss_dssp             HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence            0        00 0000                              1112223334999999999999999998   999


Q ss_pred             chHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         195 TQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       195 ~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      +...+++.|+++.+..+.|++++|||+..+
T Consensus       180 ~~~~i~~~l~~l~~~~g~tii~vTHd~~~a  209 (230)
T d1l2ta_         180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVA  209 (230)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEECCCHHHH
Confidence            999999999999988899999999997654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.4e-28  Score=208.37  Aligned_cols=140  Identities=11%  Similarity=0.108  Sum_probs=103.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhcccCC----------C
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKYND----------V  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~~~----------~  155 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++......+ .+.+..|...          +
T Consensus        14 ~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni   93 (232)
T d2awna2          14 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM   93 (232)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC----------
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHH
Confidence            4789999999999999999999999999999999999999999999999875332211 1111111111          0


Q ss_pred             Ce--eec-CCCCCHHHHHHH--------------------------HHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         156 PV--ISE-KKITDPAAIAFN--------------------------AINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       156 ~~--~~~-~~~~~~~~~~~~--------------------------~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+  ... ....+..+.+.+                          +||||++.+|++||+|||+   |+.+...+++.|
T Consensus        94 ~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l  173 (232)
T d2awna2          94 SFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  173 (232)
T ss_dssp             -----------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            00  000 000111111111                          2999999999999999998   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      +++.+..|.|++++|||+..+..
T Consensus       174 ~~l~~~~g~tii~vTHd~~~a~~  196 (232)
T d2awna2         174 SRLHKRLGRTMIYVTHDQVEAMT  196 (232)
T ss_dssp             HHHHHHSCCEEEEEESCHHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHH
Confidence            99998889999999998776544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=5.8e-28  Score=209.36  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=103.7

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhcccCCC----------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKYNDV----------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~~~~----------  155 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+......+ .+.+..|..++          
T Consensus        20 ~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl   99 (239)
T d1v43a3          20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI   99 (239)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred             EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHH
Confidence            4789999999999999999999999999999999999999999999999875422211 01111111100          


Q ss_pred             CeeecCCCCCHH-----------------------------HHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHH
Q psy2881         156 PVISEKKITDPA-----------------------------AIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMREL  203 (302)
Q Consensus       156 ~~~~~~~~~~~~-----------------------------~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L  203 (302)
                      .+.....+.+..                             +..+-+||||++.+|++||+|||+   |+.+...+++.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll  179 (239)
T d1v43a3         100 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI  179 (239)
T ss_dssp             HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHH
Confidence            000000011111                             111223999999999999999998   999999999999


Q ss_pred             HHHHHHhchhhccccceeehhhc
Q psy2881         204 KKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       204 ~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      .++.+..+.|++++|||+..+..
T Consensus       180 ~~l~~~~g~tii~vTHd~~~a~~  202 (239)
T d1v43a3         180 KKLQQKLKVTTIYVTHDQVEAMT  202 (239)
T ss_dssp             HHHHHHHTCEEEEEESCHHHHHH
T ss_pred             HHHHHhcCCeEEEEeCCHHHHHH
Confidence            99998889999999999876544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=7e-28  Score=207.59  Aligned_cols=139  Identities=15%  Similarity=0.106  Sum_probs=105.0

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhcccCC------------
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKYND------------  154 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~~~------------  154 (302)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+......+ .+.+..|...            
T Consensus        15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~   94 (229)
T d3d31a2          15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE   94 (229)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred             EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHH
Confidence            688999999999999999999999999999999999999999999999986433221 1111111111            


Q ss_pred             ----------------------CCeeec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHH
Q psy2881         155 ----------------------VPVISE--KKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIK  207 (302)
Q Consensus       155 ----------------------~~~~~~--~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~  207 (302)
                                            +.-+..  .....-.+..+-+||||++.+|++||+|||+   |+.+...+++.|+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~  174 (229)
T d3d31a2          95 FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH  174 (229)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHH
Confidence                                  000000  0001112233334999999999999999998   9999999999999999


Q ss_pred             HHhchhhccccceeehhhc
Q psy2881         208 KVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       208 ~~~~~~i~~~~hd~~lvl~  226 (302)
                      +..|.|++++|||+..+..
T Consensus       175 ~~~g~tii~vtHd~~~~~~  193 (229)
T d3d31a2         175 KKNKLTVLHITHDQTEARI  193 (229)
T ss_dssp             HHTTCEEEEEESCHHHHHH
T ss_pred             hcCCcEEEEEcCCHHHHHH
Confidence            8889999999998776544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.9e-28  Score=209.19  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=106.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH------HHHhcccCCC-C---
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ------LLILGKYNDV-P---  156 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q------l~~~~~~~~~-~---  156 (302)
                      .+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+......+.      +.+..|..++ +   
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~t   98 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT   98 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSB
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCcc
Confidence            36899999999999999999999999999999999999999999999999875443321      1111222110 0   


Q ss_pred             e--------ee-cCCCCCH--------------------------HHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         157 V--------IS-EKKITDP--------------------------AAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       157 ~--------~~-~~~~~~~--------------------------~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      +        .. .....+.                          .+..+-+||||++.+|++||+|||+   |+.+...
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~  178 (240)
T d3dhwc1          99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS  178 (240)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhH
Confidence            0        00 0000111                          1111223999999999999999997   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      +++.|+++.++.|.|++++|||+..+...
T Consensus       179 i~~~l~~l~~~~g~tvi~vTHdl~~~~~~  207 (240)
T d3dhwc1         179 ILELLKDINRRLGLTILLITHEMDVVKRI  207 (240)
T ss_dssp             HHHHHHHHHHHHCCEEEEEBSCHHHHHHH
T ss_pred             HHHHHHHHHhccCCEEEEEcCCHHHHHHh
Confidence            99999999998899999999998765443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.93  E-value=1.3e-27  Score=208.28  Aligned_cols=141  Identities=17%  Similarity=0.218  Sum_probs=104.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHH----HhcccCCC----Ce-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLL----ILGKYNDV----PV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~----~~~~~~~~----~~-  157 (302)
                      .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+.|.|+.........+    +..+...+    .+ 
T Consensus        20 ~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~   99 (240)
T d1ji0a_          20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY   99 (240)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred             EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHH
Confidence            4789999999999999999999999999999999999999999999999986544321111    11111110    00 


Q ss_pred             ----eec--CCCCC----------------------------HHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHH
Q psy2881         158 ----ISE--KKITD----------------------------PAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLM  200 (302)
Q Consensus       158 ----~~~--~~~~~----------------------------~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~  200 (302)
                          +..  .....                            -.+..+-+||||++.+|++||+|||+   |+....+++
T Consensus       100 en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~  179 (240)
T d1ji0a_         100 ENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF  179 (240)
T ss_dssp             HHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHH
Confidence                000  00001                            11111123999999999999999998   999999999


Q ss_pred             HHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         201 RELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       201 ~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +.|+++++. |.++++++||+..+...+
T Consensus       180 ~~i~~l~~~-g~til~~tH~l~~~~~~~  206 (240)
T d1ji0a_         180 EVIQKINQE-GTTILLVEQNALGALKVA  206 (240)
T ss_dssp             HHHHHHHHT-TCCEEEEESCHHHHHHHC
T ss_pred             HHHHHHHhC-CCEEEEEeCCHHHHHHhC
Confidence            999999775 899999999887665533

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.93  E-value=6.2e-28  Score=209.48  Aligned_cols=141  Identities=11%  Similarity=0.150  Sum_probs=105.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------------------------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------------------------  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------------------------  141 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....                         
T Consensus        17 ~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~l   96 (240)
T d1g2912          17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM   96 (240)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred             EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchh
Confidence            4789999999999999999999999999999999999999999999997753211                         


Q ss_pred             -HHHHHHHhc------------------ccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         142 -AYEQLLILG------------------KYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       142 -~~~ql~~~~------------------~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                       ..+++....                  +..++.-+...  ....-.+..+-+||||++.+|++||+|||+   |+.+..
T Consensus        97 tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~  176 (240)
T d1g2912          97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV  176 (240)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHH
T ss_pred             hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHH
Confidence             111111110                  01111100000  001122333344999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhhcC
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLIIDG  227 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~  227 (302)
                      .+++.|.++.++.|.|++++|||+..+...
T Consensus       177 ~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~  206 (240)
T d1g2912         177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTM  206 (240)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHh
Confidence            999999999988899999999998776543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=9.1e-28  Score=208.32  Aligned_cols=142  Identities=13%  Similarity=0.075  Sum_probs=105.3

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-------------------------h
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-------------------------A  141 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-------------------------~  141 (302)
                      .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...                         .
T Consensus        19 ~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt   98 (242)
T d1oxxk2          19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT   98 (242)
T ss_dssp             EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred             EEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence            478999999999999999999999999999999999999999999999875311                         1


Q ss_pred             HHHHHHHh------------------cccCCCCeeecC--CCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHH
Q psy2881         142 AYEQLLIL------------------GKYNDVPVISEK--KITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSH  198 (302)
Q Consensus       142 ~~~ql~~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~  198 (302)
                      ..+.+...                  .+..++.-+...  ....-.+..+-+||||++.+|++||+|||+   |+.+...
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~  178 (242)
T d1oxxk2          99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS  178 (242)
T ss_dssp             HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred             HHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence            11111111                  011111000000  001112223334999999999999999998   9999999


Q ss_pred             HHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         199 LMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       199 l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +++.|+++.++.+.|++++|||+..+...+
T Consensus       179 i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~  208 (242)
T d1oxxk2         179 ARALVKEVQSRLGVTLLVVSHDPADIFAIA  208 (242)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCHHHHHHHC
T ss_pred             HHHHHHHHHhccCCEEEEEECCHHHHHHhC
Confidence            999999999888999999999987765543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=1.6e-26  Score=203.12  Aligned_cols=141  Identities=15%  Similarity=0.163  Sum_probs=105.8

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH----hcccCC----CCe-
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI----LGKYND----VPV-  157 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~----~~~~~~----~~~-  157 (302)
                      .++++|||++++||+++|+||||||||||+++|+|+++|++|+|.+.|.|+......+..+.    ..|...    ..+ 
T Consensus        18 ~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~   97 (254)
T d1g6ha_          18 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL   97 (254)
T ss_dssp             EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred             EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeee
Confidence            47899999999999999999999999999999999999999999999999864443322111    111110    000 


Q ss_pred             ----e---------------ecCCCCC----------------------------HHHHHHHHHHHHHhCCCCeEEEcCC
Q psy2881         158 ----I---------------SEKKITD----------------------------PAAIAFNAINIAQKKNTDIVIVDTS  190 (302)
Q Consensus       158 ----~---------------~~~~~~~----------------------------~~~~~~~~la~al~~~~~llllDEP  190 (302)
                          +               ......+                            -.+..+-+||||++.+|++||+|||
T Consensus        98 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEP  177 (254)
T d1g6ha_          98 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP  177 (254)
T ss_dssp             HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             eeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCC
Confidence                0               0000001                            1111122399999999999999999


Q ss_pred             C---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         191 G---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       191 ~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      +   |+.....+++.|+++++ .|.++++++||+..+...+
T Consensus       178 t~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~~~~~~~  217 (254)
T d1g6ha_         178 IAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYI  217 (254)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTTGGGC
T ss_pred             cccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhC
Confidence            8   99999999999999965 4899999999999887765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=2.5e-26  Score=199.74  Aligned_cols=141  Identities=15%  Similarity=0.098  Sum_probs=105.0

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH--HHHHHhcccCCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY--EQLLILGKYNDV---------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~--~ql~~~~~~~~~---------  155 (302)
                      ++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+......  ..+.+..+..++         
T Consensus        16 ~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~   95 (238)
T d1vpla_          16 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY   95 (238)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred             EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHH
Confidence            589999999999999999999999999999999999999999999999987543211  001111111100         


Q ss_pred             ----------------------------Ceee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHH
Q psy2881         156 ----------------------------PVIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRE  202 (302)
Q Consensus       156 ----------------------------~~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~  202 (302)
                                                  .-..  ........+..+-+||+|++.+|+++|+|||+   |+.....+++.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~  175 (238)
T d1vpla_          96 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI  175 (238)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence                                        0000  00001112222334999999999999999997   99999999999


Q ss_pred             HHHHHHHhchhhccccceeehhhcCC
Q psy2881         203 LKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       203 L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ++++.+. |.+++++|||+..+...+
T Consensus       176 i~~~~~~-g~tii~~tH~l~~~~~~~  200 (238)
T d1vpla_         176 LKQASQE-GLTILVSSHNMLEVEFLC  200 (238)
T ss_dssp             HHHHHHT-TCEEEEEECCHHHHTTTC
T ss_pred             HHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence            9998765 899999999988877655

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=4.1e-26  Score=200.56  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=103.2

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh---------HHHHHHHh-------c
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA---------AYEQLLIL-------G  150 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~---------~~~ql~~~-------~  150 (302)
                      .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....         .......+       .
T Consensus        16 ~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vf   95 (258)
T d1b0ua_          16 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF   95 (258)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred             EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEE
Confidence            5789999999999999999999999999999999999999999999998864210         00011111       1


Q ss_pred             ccCC--------------------------------------CCe-eec--CCCCCHHHHHHHHHHHHHhCCCCeEEEcC
Q psy2881         151 KYND--------------------------------------VPV-ISE--KKITDPAAIAFNAINIAQKKNTDIVIVDT  189 (302)
Q Consensus       151 ~~~~--------------------------------------~~~-~~~--~~~~~~~~~~~~~la~al~~~~~llllDE  189 (302)
                      |...                                      +.- ...  .....-.+..+-+||||++.+|++||+||
T Consensus        96 Q~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDE  175 (258)
T d1b0ua_          96 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE  175 (258)
T ss_dssp             SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             echhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEecc
Confidence            1110                                      000 000  00011122222349999999999999999


Q ss_pred             CC---CccchHHHHHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         190 SG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       190 P~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ||   |+.+..++++.|+++++. |.|++++|||+..+...+
T Consensus       176 PT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~~~~~~a  216 (258)
T d1b0ua_         176 PTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVS  216 (258)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHC
T ss_pred             ccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHHHHHHhC
Confidence            98   999999999999999875 899999999988766543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1.3e-25  Score=194.29  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=99.6

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH-HHHHhccc-----------------
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE-QLLILGKY-----------------  152 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~-ql~~~~~~-----------------  152 (302)
                      |+||++. +++++|+||||||||||+++|+|+++|++|+|.++|.|+......+ .+.+..|.                 
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l   95 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL   95 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhh
Confidence            6788885 5899999999999999999999999999999999999875432210 11111111                 


Q ss_pred             ------------------CCCCeeecCC--CCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHHH
Q psy2881         153 ------------------NDVPVISEKK--ITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKV  209 (302)
Q Consensus       153 ------------------~~~~~~~~~~--~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~  209 (302)
                                        .++.-+....  ...-.+..+-+||||++.+|+++|+|||+   |+.++..+++.++++++.
T Consensus        96 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~  175 (240)
T d2onka1          96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE  175 (240)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHh
Confidence                              1111000000  00112222234999999999999999998   999999999999999988


Q ss_pred             hchhhccccceeehhhcCC
Q psy2881         210 IEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       210 ~~~~i~~~~hd~~lvl~~~  228 (302)
                      .+.+++++|||+..+...+
T Consensus       176 ~g~tvi~vtHd~~~~~~~a  194 (240)
T d2onka1         176 FDVPILHVTHDLIEAAMLA  194 (240)
T ss_dssp             HTCCEEEEESCHHHHHHHC
T ss_pred             cCCeEEEEeCCHHHHHHhC
Confidence            8999999999877665533

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-25  Score=195.54  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=104.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~--------  155 (302)
                      .+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+......   .++.+..|...+        
T Consensus        28 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  107 (251)
T d1jj7a_          28 LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN  107 (251)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred             EeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhh
Confidence            478999999999999999999999999999999999999999999999887432221   111111111100        


Q ss_pred             ----------------------------------Cee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         156 ----------------------------------PVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       156 ----------------------------------~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                        ...  .......-.+..+-+||||++++|+++|+||||   |+.+.
T Consensus       108 i~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~  187 (251)
T d1jj7a_         108 IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ  187 (251)
T ss_dssp             HHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhH
Confidence                                              000  000112233444445999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ..+++.|.++.+..++|++++|||+..+
T Consensus       188 ~~i~~~l~~l~~~~~~Tvi~itH~l~~~  215 (251)
T d1jj7a_         188 LQVEQLLYESPERYSRSVLLITQHLSLV  215 (251)
T ss_dssp             HHHHHHHHTCGGGGGCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHhhhcCCEEEEEeCCHHHH
Confidence            9999999998877789999999987654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=5.2e-25  Score=186.85  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=99.7

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-----------------hHHHHHHH
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-----------------AAYEQLLI  148 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-----------------~~~~ql~~  148 (302)
                      +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.                 ...+.+..
T Consensus        14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~   93 (200)
T d1sgwa_          14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKA   93 (200)
T ss_dssp             SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred             CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999775321                 11222222


Q ss_pred             hcccCCCC--------------ee---ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         149 LGKYNDVP--------------VI---SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       149 ~~~~~~~~--------------~~---~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                      +....+..              ..   .........+..+-.||+|++.+|+++|+|||+   |+.+...+++.|.++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~  173 (200)
T d1sgwa_          94 VASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK  173 (200)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH
T ss_pred             HHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHh
Confidence            21111110              00   001112233444455999999999999999997   99999999999999988


Q ss_pred             Hhchhhcccccee
Q psy2881         209 VIEKKIFELPYEI  221 (302)
Q Consensus       209 ~~~~~i~~~~hd~  221 (302)
                      ..+.+++.++|++
T Consensus       174 ~~~~~ii~~~~~l  186 (200)
T d1sgwa_         174 EKGIVIISSREEL  186 (200)
T ss_dssp             HHSEEEEEESSCC
T ss_pred             CCCEEEEEEechh
Confidence            7666666655654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=8.5e-25  Score=190.24  Aligned_cols=137  Identities=20%  Similarity=0.213  Sum_probs=103.4

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH---HHHHHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY---EQLLILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~---~ql~~~~~~~~~--------  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+......   .++.+..|...+        
T Consensus        17 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eN   96 (241)
T d2pmka1          17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN   96 (241)
T ss_dssp             EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred             ceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCcccccc
Confidence            578999999999999999999999999999999999999999999999987543321   111111221100        


Q ss_pred             -----------------------------C-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchH
Q psy2881         156 -----------------------------P-----VI-SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQS  197 (302)
Q Consensus       156 -----------------------------~-----~~-~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~  197 (302)
                                                   +     .. .......-.+..+-+||||++++|+++|+|||+   |+.+..
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~  176 (241)
T d2pmka1          97 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH  176 (241)
T ss_dssp             HCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred             ccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHH
Confidence                                         0     00 000112233444445999999999999999998   999999


Q ss_pred             HHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         198 HLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       198 ~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      .+++.|+++.+  ++|++++||++..+.
T Consensus       177 ~i~~~l~~l~~--~~Tvi~itH~l~~~~  202 (241)
T d2pmka1         177 VIMRNMHKICK--GRTVIIIAHRLSTVK  202 (241)
T ss_dssp             HHHHHHHHHHT--TSEEEEECSSGGGGT
T ss_pred             HHHHHHHHHhC--CCEEEEEECCHHHHH
Confidence            99999999864  789999999987653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=1.4e-24  Score=190.38  Aligned_cols=136  Identities=14%  Similarity=0.196  Sum_probs=102.1

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHH---HHhcccCCC--------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQL---LILGKYNDV--------  155 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql---~~~~~~~~~--------  155 (302)
                      ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+.........   .+..+...+        
T Consensus        29 ~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n  108 (253)
T d3b60a1          29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN  108 (253)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             ceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhh
Confidence            578999999999999999999999999999999999999999999999887543321110   011111000        


Q ss_pred             ----------------------------------Cee--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         156 ----------------------------------PVI--SEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       156 ----------------------------------~~~--~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                        ...  .......-.+..+-+||||++++|+++|+|||+   |+.+.
T Consensus       109 ~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~  188 (253)
T d3b60a1         109 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE  188 (253)
T ss_dssp             HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred             hhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHH
Confidence                                              000  000112233444455999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ..+++.|+++.+  ++|++++||++..+
T Consensus       189 ~~i~~~l~~l~~--~~Tvi~itH~l~~~  214 (253)
T d3b60a1         189 RAIQAALDELQK--NRTSLVIAHRLSTI  214 (253)
T ss_dssp             HHHHHHHHHHHT--TSEEEEECSCGGGT
T ss_pred             HHHHHHHHHhcc--CCEEEEEECCHHHH
Confidence            999999999864  78999999998754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.90  E-value=3.9e-25  Score=192.67  Aligned_cols=138  Identities=15%  Similarity=0.212  Sum_probs=102.6

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH---HHHHHHhcccCC---------
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA---YEQLLILGKYND---------  154 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~---~~ql~~~~~~~~---------  154 (302)
                      ++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.|+.....   +.++.+..|...         
T Consensus        16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN   95 (242)
T d1mv5a_          16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN   95 (242)
T ss_dssp             CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhh
Confidence            57899999999999999999999999999999999999999999999987632110   001111111100         


Q ss_pred             -----------------------------CC----eee--cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         155 -----------------------------VP----VIS--EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       155 -----------------------------~~----~~~--~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                                   .+    ...  ......-.+..+-+||||++++|+++|+|||+   |+.+.
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~  175 (242)
T d1mv5a_          96 LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE  175 (242)
T ss_dssp             TTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSC
T ss_pred             eecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHH
Confidence                                         00    000  00112334455556999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhhc
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLIID  226 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~  226 (302)
                      ..+++.|+++.+  ++|++++||++..+..
T Consensus       176 ~~i~~~l~~l~~--~~Tvi~itH~l~~~~~  203 (242)
T d1mv5a_         176 SMVQKALDSLMK--GRTTLVIAHRLSTIVD  203 (242)
T ss_dssp             CHHHHHHHHHHT--TSEEEEECCSHHHHHH
T ss_pred             HHHHHHHHHHcC--CCEEEEEECCHHHHHh
Confidence            999999999863  7899999998775543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.1e-24  Score=187.02  Aligned_cols=140  Identities=16%  Similarity=0.135  Sum_probs=100.5

Q ss_pred             ccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHH---hcccCCCCee-----
Q psy2881          87 SLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLI---LGKYNDVPVI-----  158 (302)
Q Consensus        87 ~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~---~~~~~~~~~~-----  158 (302)
                      ..++++||++++||+++|+||||||||||+++|+|+. |.+|+|.+.|.++......+....   +.+....++.     
T Consensus        13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   91 (231)
T d1l7vc_          13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH   91 (231)
T ss_dssp             TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHH
T ss_pred             ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHH
Confidence            3588999999999999999999999999999999965 688999999998643332221111   1111111100     


Q ss_pred             ----ecCC-------------------------CCCHHHHHHHHHHHHHhC-------CCCeEEEcCCC---CccchHHH
Q psy2881         159 ----SEKK-------------------------ITDPAAIAFNAINIAQKK-------NTDIVIVDTSG---RLSTQSHL  199 (302)
Q Consensus       159 ----~~~~-------------------------~~~~~~~~~~~la~al~~-------~~~llllDEP~---d~~~~~~l  199 (302)
                          ....                         ...-.+..+-+||+|+++       +|+++|+|||+   |+.+...+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i  171 (231)
T d1l7vc_          92 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  171 (231)
T ss_dssp             HHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHH
T ss_pred             HhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence                0000                         011122223348999986       67999999997   99999999


Q ss_pred             HHHHHHHHHHhchhhccccceeehhhcCC
Q psy2881         200 MRELKKIKKVIEKKIFELPYEIFLIIDGN  228 (302)
Q Consensus       200 ~~~L~~l~~~~~~~i~~~~hd~~lvl~~~  228 (302)
                      ++.++++++. |.++++++||+..+.+.+
T Consensus       172 ~~~i~~l~~~-g~tii~vtHdl~~~~~~~  199 (231)
T d1l7vc_         172 DKILSALCQQ-GLAIVMSSHDLNHTLRHA  199 (231)
T ss_dssp             HHHHHHHHHT-TCEEEECCCCHHHHHHHC
T ss_pred             HHHHHHHHhC-CCEEEEEeCCHHHHHHHC
Confidence            9999999764 899999999988776654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=5.1e-24  Score=186.68  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=101.5

Q ss_pred             hccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHH---HHHHhcccC---------
Q psy2881          86 KSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYE---QLLILGKYN---------  153 (302)
Q Consensus        86 ~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~---ql~~~~~~~---------  153 (302)
                      .++++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+......+   ++.+..+..         
T Consensus        31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~e  110 (255)
T d2hyda1          31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE  110 (255)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHH
Confidence            35899999999999999999999999999999999999999999999998864322110   001111110         


Q ss_pred             ---------------------CC-------C------eeecCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---Cccch
Q psy2881         154 ---------------------DV-------P------VISEKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQ  196 (302)
Q Consensus       154 ---------------------~~-------~------~~~~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~  196 (302)
                                           ++       |      +-.........+..+-+||||++++|+++|+|||+   |+.+.
T Consensus       111 Ni~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~  190 (255)
T d2hyda1         111 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE  190 (255)
T ss_dssp             HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred             HHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence                                 00       0      00000112233344455999999999999999998   99999


Q ss_pred             HHHHHHHHHHHHHhchhhccccceeehhh
Q psy2881         197 SHLMRELKKIKKVIEKKIFELPYEIFLII  225 (302)
Q Consensus       197 ~~l~~~L~~l~~~~~~~i~~~~hd~~lvl  225 (302)
                      ..+++.|.++.+  ++|++++||++..+-
T Consensus       191 ~~i~~~l~~l~~--~~TvI~itH~~~~~~  217 (255)
T d2hyda1         191 SIIQEALDVLSK--DRTTLIVAHRLSTIT  217 (255)
T ss_dssp             HHHHHHHHHHTT--TSEEEEECSSGGGTT
T ss_pred             HHHHHHHHHHhc--CCEEEEEeCCHHHHH
Confidence            999999988864  679999999877543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.4e-23  Score=184.06  Aligned_cols=140  Identities=13%  Similarity=0.096  Sum_probs=97.7

Q ss_pred             HhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc------C--CChhHHHHHHH-------
Q psy2881          84 LLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD------T--FRAAAYEQLLI-------  148 (302)
Q Consensus        84 ~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d------~--~~~~~~~ql~~-------  148 (302)
                      .-+++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.-      .  +.....+.+..       
T Consensus        47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~  126 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY  126 (281)
T ss_dssp             TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred             CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccch
Confidence            34689999999999999999999999999999999999999999999887732      1  11112222110       


Q ss_pred             ----hcccC-------CCC-----eee-cCCCCCHHHHHHHHHHHHHhCCCCeEEEcCCC---CccchHHHHHHHHHHHH
Q psy2881         149 ----LGKYN-------DVP-----VIS-EKKITDPAAIAFNAINIAQKKNTDIVIVDTSG---RLSTQSHLMRELKKIKK  208 (302)
Q Consensus       149 ----~~~~~-------~~~-----~~~-~~~~~~~~~~~~~~la~al~~~~~llllDEP~---d~~~~~~l~~~L~~l~~  208 (302)
                          ..+..       .++     ... ........+..+-+||||++++|+++|+|||+   |+.+...+++.+.....
T Consensus       127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~  206 (281)
T d1r0wa_         127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM  206 (281)
T ss_dssp             HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred             HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh
Confidence                00000       010     011 11123455666778999999999999999998   88887777765433222


Q ss_pred             Hhchhhccccceeehh
Q psy2881         209 VIEKKIFELPYEIFLI  224 (302)
Q Consensus       209 ~~~~~i~~~~hd~~lv  224 (302)
                       .++|+++++|++..+
T Consensus       207 -~~~tvi~itH~~~~l  221 (281)
T d1r0wa_         207 -ANKTRILVTSKMEHL  221 (281)
T ss_dssp             -TTSEEEEECSCHHHH
T ss_pred             -CCCEEEEEechHHHH
Confidence             367899999976543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.48  E-value=1.6e-14  Score=117.89  Aligned_cols=118  Identities=17%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHh-cccCCCC-e----------eecCCCCCH---
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLIL-GKYNDVP-V----------ISEKKITDP---  166 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~-~~~~~~~-~----------~~~~~~~~~---  166 (302)
                      ++|+||||||||||++.|++.++++.|.+...+.+....+.  +.... ....+.. .          .......+.   
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF   80 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchh
Confidence            78999999999999999999999999999887765431110  00000 0000000 0          000001111   


Q ss_pred             ----HHHHHHHHHHHHhCCCCeEEEcCCC-CccchHHHHHHHHHHHHHhchhhcccccee
Q psy2881         167 ----AAIAFNAINIAQKKNTDIVIVDTSG-RLSTQSHLMRELKKIKKVIEKKIFELPYEI  221 (302)
Q Consensus       167 ----~~~~~~~la~al~~~~~llllDEP~-d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~  221 (302)
                          ......++++++..+|+++++|||+ +........+.+.++.+..+.++++++|+.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~  140 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIR  140 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSS
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccH
Confidence                1123345788889999999999998 555566777888887766677888888863

>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor, FtsY {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=1.1e-10  Score=83.06  Aligned_cols=58  Identities=38%  Similarity=0.565  Sum_probs=52.8

Q ss_pred             chHHHHHHHHHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Q psy2881           3 INWITRLKESLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKK   60 (302)
Q Consensus         3 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~   60 (302)
                      ||||.++++++++++    +++.++|.++++|++.+++|++.|+.+||+++++.+|++.+++
T Consensus         1 Mg~f~klk~gL~KTr~~~~~~l~~lf~~~~iDe~~leeLEe~LI~aDvGv~tt~~Ii~~lr~   62 (81)
T d1vmaa1           1 MGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEE   62 (81)
T ss_dssp             -CHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            899999999999996    5667888888999999999999999999999999999998864

>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=5.1e-10  Score=80.20  Aligned_cols=77  Identities=38%  Similarity=0.501  Sum_probs=68.9

Q ss_pred             HHHHHH----HHHHHhhhcCcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy2881          12 SLSKTA----CNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKS   87 (302)
Q Consensus        12 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~   87 (302)
                      ++++++    +++.++|.+++++++++++|++.|+.+||++++|.+|++.+++....++..+++.++..+++.+.+.+.+
T Consensus         2 gL~KTr~~~~~~i~~l~~~~~id~~~leeLEe~LI~aDvG~~tt~~ii~~lk~~~~~~~~~~~~~l~~~L~~~i~~iL~~   81 (84)
T d2qy9a1           2 SLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAK   81 (84)
T ss_dssp             HTTTTTTTSTTHHHHHHTTCBCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCBGGGHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhch
Confidence            445553    6788899888999999999999999999999999999999999988888889999999999999999976


Q ss_pred             c
Q psy2881          88 L   88 (302)
Q Consensus        88 ~   88 (302)
                      .
T Consensus        82 ~   82 (84)
T d2qy9a1          82 V   82 (84)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=3e-08  Score=81.76  Aligned_cols=41  Identities=27%  Similarity=0.363  Sum_probs=34.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      |-+++++|++||||||+.++|+..+...+-++.+.+.|..|
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r   42 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR   42 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccccee
Confidence            46899999999999999999999888777778777777543

>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.44  E-value=6e-07  Score=64.02  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCC----CCCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKK----LFNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   76 (302)
                      ||+.|.++++..   ++++.+...+++    +.+.+++.+|+++||+..+++++++.+++++.+++    ..+.+.+..+
T Consensus         1 MF~~L~~~l~~a---~~~l~g~~~i~E~~i~~~l~eir~ALLeADV~l~vvk~f~~~ik~k~~g~~v~~~~~p~~~iiki   77 (88)
T d1ls1a1           1 MFQQLSARLQEA---IGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILAT   77 (88)
T ss_dssp             CCHHHHHHHHHH---HHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHH
T ss_pred             ChHHHHHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHhHHHhhcCCCHHHHHHHH
Confidence            678888887655   444444557887    46789999999999999999999999999987765    3456788899


Q ss_pred             HHHHHHHHhh
Q psy2881          77 LHNLLVNLLK   86 (302)
Q Consensus        77 l~~~l~~~l~   86 (302)
                      +.++|.+.+.
T Consensus        78 V~dELv~lLG   87 (88)
T d1ls1a1          78 VYEALKEALG   87 (88)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            9999988763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.40  E-value=3.4e-06  Score=74.68  Aligned_cols=146  Identities=17%  Similarity=0.217  Sum_probs=83.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh-------HHHHHHHhcccCCCCeeecCCCCCHH--
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA-------AYEQLLILGKYNDVPVISEKKITDPA--  167 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~-------~~~ql~~~~~~~~~~~~~~~~~~~~~--  167 (302)
                      .+.-+++|.||.|||||||+..|+..+...+.+|.+...|+.+.-       ..-.........++-+..........  
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            345789999999999999999999888878889999988875321       00001111111111111222222222  


Q ss_pred             -HHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCC
Q psy2881         168 -AIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI  246 (302)
Q Consensus       168 -~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~  246 (302)
                       ....+.+..+-..+.+++|+-+.|..+....+.               ...|-..+|+..+.|.+.-..-....+.  .
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---------------~~~D~~v~v~~p~~GD~iQ~~k~gilE~--a  191 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---------------DLTDFFLVLMLPGAGDELQGIKKGIFEL--A  191 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---------------TTSSEEEEEECSCC------CCTTHHHH--C
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh---------------cccceEEEEeeccchhhhhhhhhhHhhh--h
Confidence             233444555566889999999999776644321               1245556666666654221100111111  3


Q ss_pred             CeEEEecCCCCCc
Q psy2881         247 TGLIITKLDGTTK  259 (302)
Q Consensus       247 ~~~i~tk~d~~~~  259 (302)
                      |.+++||.|....
T Consensus       192 Di~vvNKaD~~~~  204 (323)
T d2qm8a1         192 DMIAVNKADDGDG  204 (323)
T ss_dssp             SEEEEECCSTTCC
T ss_pred             heeeEeccccccc
Confidence            7899999995433

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.3e-06  Score=77.63  Aligned_cols=145  Identities=15%  Similarity=0.174  Sum_probs=80.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHH-----HHHH--HhcccCCCCeeecCCC---CCH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAY-----EQLL--ILGKYNDVPVISEKKI---TDP  166 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~-----~ql~--~~~~~~~~~~~~~~~~---~~~  166 (302)
                      .+.-+++|.||+|||||||+..|+..+...+.+|.+...|+...-..     ++.+  .+....++-.......   ...
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            45679999999999999999999999998888999999997643211     1111  1111111111111111   123


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHhhcCC
Q psy2881         167 AAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSKILRI  246 (302)
Q Consensus       167 ~~~~~~~la~al~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~~~~~  246 (302)
                      .....+.+..+-..++|++|+.+.|.......+       .        ...|-..+|+..+.|.+.-.......+.  .
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i-------~--------~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--a  194 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQSETEV-------A--------RMVDCFISLQIAGGGDDLQGIKKGLMEV--A  194 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH-------H--------TTCSEEEEEECC------CCCCHHHHHH--C
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccccchhh-------h--------hccceEEEEecCCCchhhhhhchhhhcc--c
Confidence            334445565566789999999999865543221       1        1234455556555543210001111122  3


Q ss_pred             CeEEEecCCCCC
Q psy2881         247 TGLIITKLDGTT  258 (302)
Q Consensus       247 ~~~i~tk~d~~~  258 (302)
                      |.+|+||.|...
T Consensus       195 Di~VvNKaD~~~  206 (327)
T d2p67a1         195 DLIVINKDDGDN  206 (327)
T ss_dssp             SEEEECCCCTTC
T ss_pred             cEEEEEeecccc
Confidence            689999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.8e-07  Score=72.91  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +++|+|++|||||||++.|+..+...+.+|.+...|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            79999999999999999999999998888988877754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=98.26  E-value=3.7e-06  Score=72.15  Aligned_cols=123  Identities=17%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh-hhCCCeEEEecccCCChhHHHH-------------------------HHHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF-KKRKKSVLLAACDTFRAAAYEQ-------------------------LLIL  149 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~-~~~~g~V~l~~~d~~~~~~~~q-------------------------l~~~  149 (302)
                      +.+|+++.|.|++|+||||++..++.-+ ...+.+|.+...+.........                         +..+
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW  111 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHHhhcCCchhhcccccchhhhHHHHHH
Confidence            5789999999999999999999998654 4556788888765421110000                         0011


Q ss_pred             cc----cCCCCeeecCCCCCHHHHHHHHHH-HHHhCCCCeEEEcCCC-------C---ccchHHHHHHHHHHHHHhchhh
Q psy2881         150 GK----YNDVPVISEKKITDPAAIAFNAIN-IAQKKNTDIVIVDTSG-------R---LSTQSHLMRELKKIKKVIEKKI  214 (302)
Q Consensus       150 ~~----~~~~~~~~~~~~~~~~~~~~~~la-~al~~~~~llllDEP~-------d---~~~~~~l~~~L~~l~~~~~~~i  214 (302)
                      ..    ...+..+............ ..+. .....+|++|++|--.       +   ......++..|+++++..+.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~v  190 (277)
T d1cr2a_         112 FDELFGNDTFHLYDSFAEAETDRLL-AKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVL  190 (277)
T ss_dssp             HHHHHSSSCEEEECCC-CCCHHHHH-HHHHHHHHTTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHhhccceeeeeccccchhHHHHH-HHhhhhhhccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccc
Confidence            00    0111111111222222222 2222 2345689999999532       1   1223457788888888888888


Q ss_pred             ccccc
Q psy2881         215 FELPY  219 (302)
Q Consensus       215 ~~~~h  219 (302)
                      ++++|
T Consensus       191 i~~~q  195 (277)
T d1cr2a_         191 VVICH  195 (277)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            77777

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.24  E-value=9.5e-09  Score=82.76  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .+++|.||.||||||+++.|+..+...+.++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   36 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS   36 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence            68999999999999999999999987777766543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=3.4e-06  Score=72.09  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh----------hCCCeEEEecccCCChhHHHHHHHhcccCC----------CC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK----------KRKKSVLLAACDTFRAAAYEQLLILGKYND----------VP  156 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~----------~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~----------~~  156 (302)
                      .+|+++.|.|++|+||||++..||..+.          ...+.|.+.+.+.......+.+..+....+          ..
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~~~~~~~~~~~~~~~~~~  106 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL  106 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHHhhccChhhhhcccccce
Confidence            3689999999999999999988876542          234678887766543222222222222111          00


Q ss_pred             eeecCCC--CCHHHHHHHHHHHHHhCCCCeEEEcCCC--------CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         157 VISEKKI--TDPAAIAFNAINIAQKKNTDIVIVDTSG--------RLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       157 ~~~~~~~--~~~~~~~~~~la~al~~~~~llllDEP~--------d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      +......  ..........+. ....++++|++|.-.        +......++..|..+++..+.+++++.|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H  178 (274)
T d1nlfa_         107 IQPLIGSLPNIMAPEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH  178 (274)
T ss_dssp             ECCCTTSCCCTTSHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             eccccCccchhHHHHHHHHHH-HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhh
Confidence            1111000  011111111122 235789999999653        2223346777788888877888877777

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.19  E-value=2e-06  Score=72.19  Aligned_cols=124  Identities=14%  Similarity=0.056  Sum_probs=71.3

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhccc------CCCCeeecCC--CCCHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKY------NDVPVISEKK--ITDPA  167 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~------~~~~~~~~~~--~~~~~  167 (302)
                      +++|.++.|.||+|+||||++..++.-....++.+.+...+.......+....+...      .+...+....  .....
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE  102 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhHH
Confidence            568999999999999999999999988777778888887664332222222211110      0111111111  11222


Q ss_pred             HHHHHHHHHHHhCCCCeEEEcCCC------CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         168 AIAFNAINIAQKKNTDIVIVDTSG------RLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       168 ~~~~~~la~al~~~~~llllDEP~------d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .............+|+++++|.-+      +.......+..|.++++..+.+++++.|
T Consensus       103 ~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~  160 (242)
T d1tf7a2         103 DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT  160 (242)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence            222222222345689999999753      2233334555556666666777666665

>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.18  E-value=5.3e-06  Score=58.44  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCC----CCHHHHHHH
Q psy2881           5 WITRLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKL----FNTEQVRNV   76 (302)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   76 (302)
                      ||++|.+.+++       +.++..+++    +.+.+++.+|+++||+.+++++|.+.+++.+.+++.    .+.+.+..+
T Consensus         1 l~~~l~~a~~k-------l~~~~~i~E~~i~~~l~eIr~ALLeADVn~~vv~~f~~~ik~k~~~~~v~~g~~~~~~i~ki   73 (84)
T d1j8yf1           1 LLDNLRDTVRK-------FLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKI   73 (84)
T ss_dssp             CHHHHHHHHHH-------HHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHH
T ss_pred             CchHHHHHHHH-------HhCCCCCCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Confidence            45666666544       344556665    567899999999999999999999999999987763    356788899


Q ss_pred             HHHHHHHHhh
Q psy2881          77 LHNLLVNLLK   86 (302)
Q Consensus        77 l~~~l~~~l~   86 (302)
                      +.++|.+.+.
T Consensus        74 V~~eLv~lLG   83 (84)
T d1j8yf1          74 VYDELSNLFG   83 (84)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            9999988763

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.17  E-value=7.9e-07  Score=70.69  Aligned_cols=39  Identities=23%  Similarity=0.112  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+++|+|++|||||||+..|+..++..+.+|.+.-.|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~   40 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   40 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence            478999999999999999999999999889988766644

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.2e-07  Score=70.97  Aligned_cols=38  Identities=29%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .+.|+||+|+|||||++.++..+...+++|.+.+++..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~   40 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV   40 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            57899999999999999999999998888887776643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.04  E-value=2.5e-05  Score=64.70  Aligned_cols=41  Identities=34%  Similarity=0.389  Sum_probs=36.5

Q ss_pred             CeEEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881          99 PFVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus        99 g~ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      |++|++. +..|+||||+...||..+...+.+|.+.+.|...
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~   43 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            6789999 5789999999999999999888899999998653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=98.00  E-value=5e-06  Score=75.72  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeee--cCCCCCHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVIS--EKKITDPAAIAFNAI  174 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~--~~~~~~~~~~~~~~l  174 (302)
                      .+..++.+.||+|||||||+..+...+.....+|.-...++-.           ...++....  .....+.    ..++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~-----------~~~~~~q~~v~~~~~~~~----~~~l  220 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF-----------DIDGIGQTQVNPRVDMTF----ARGL  220 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS-----------CCSSSEEEECBGGGTBCH----HHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccc-----------ccCCCCeeeecCCcCCCH----HHHH
Confidence            3567899999999999999999988775445565544333210           011111111  1111122    2446


Q ss_pred             HHHHhCCCCeEEEcCCCCccchH
Q psy2881         175 NIAQKKNTDIVIVDTSGRLSTQS  197 (302)
Q Consensus       175 a~al~~~~~llllDEP~d~~~~~  197 (302)
                      ..++-++||+|++.|--|..+..
T Consensus       221 ~~~lR~dPDvi~igEiRd~~ta~  243 (401)
T d1p9ra_         221 RAILRQDPDVVMVGEIRDLETAQ  243 (401)
T ss_dssp             HHHGGGCCSEEEESCCCSHHHHH
T ss_pred             HHHHhhcCCEEEecCcCChHHHH
Confidence            66788999999999998876543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=6e-06  Score=69.71  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=25.3

Q ss_pred             cCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          88 LEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        88 ~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +-.+++++ +.+.++.|.|||.+||||+++.++-.
T Consensus        31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEC-CCceEEEEeccCchhhHHHHHHHHHH
Confidence            33444444 23468889999999999999998754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.94  E-value=4.3e-05  Score=63.16  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh
Q psy2881         100 FVIMIV-GVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA  140 (302)
Q Consensus       100 ~ii~lv-GpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~  140 (302)
                      ++|++. |..|+||||+...||..+...+.+|.+.+.|.+..
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~   43 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMA   43 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            478888 68899999999999999998888999999997643

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.88  E-value=1.3e-05  Score=70.87  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=50.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      +..+.+.||+||||||+++.|++.+++...-|.+-  |+.....       ....++...........    .+.+..++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE--d~~El~l-------~~~~~~~~~~~~~~~~~----~~ll~~~l  232 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE--DTEEIVF-------KHHKNYTQLFFGGNITS----ADCLKSCL  232 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE--SSCCCCC-------SSCSSEEEEECBTTBCH----HHHHHHHT
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeecc--chhhhhc-------ccccccceeccccchhH----HHHHHHHh
Confidence            44588999999999999999999988766555553  3322110       00111111111112222    24456677


Q ss_pred             hCCCCeEEEcCCCCc
Q psy2881         179 KKNTDIVIVDTSGRL  193 (302)
Q Consensus       179 ~~~~~llllDEP~d~  193 (302)
                      -++||.+++.|--+.
T Consensus       233 R~~pd~iivgEiR~~  247 (323)
T d1g6oa_         233 RMRPDRIILGELRSS  247 (323)
T ss_dssp             TSCCSEEEESCCCST
T ss_pred             ccCCCcccCCccCch
Confidence            789999999998644

>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle receptor, FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.85  E-value=9e-06  Score=52.87  Aligned_cols=54  Identities=28%  Similarity=0.404  Sum_probs=45.5

Q ss_pred             CcCChHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy2881          27 KKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNLLVNLLKS   87 (302)
Q Consensus        27 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~   87 (302)
                      ...+++++++|++.|+.+||+++++.+|++.+++...       +.++.++++.+.+.+.|
T Consensus         5 g~~~d~~leeLEe~Li~ADvGv~tt~~ii~~Lr~~~~-------~~l~~~Lke~l~~~L~P   58 (58)
T d1okkd1           5 GGNLEEVLEELEMALLAADVGLSATEEILQEVRASGR-------KDLKEAVKEKLVGMLEP   58 (58)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCC-------SCHHHHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCc
Confidence            4567889999999999999999999999999986642       34788888888887754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.84  E-value=5.5e-05  Score=64.84  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh--hCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK--KRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~--~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      .++|+|+.|+|||||+..|...-.  ...|+|. .|.........++-+..  .....+....                 
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~--ti~~~~~~~~-----------------   63 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRT--TVRTGVAPLL-----------------   63 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTS--CCSCEEEEEE-----------------
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCC--eEEeeccccc-----------------
Confidence            589999999999999999964432  2234332 11111111222221111  1111111111                 


Q ss_pred             hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH-HHHHHHHHhhcC-CCeEEEecCCC
Q psy2881         179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT-LSQIKEFSKILR-ITGLIITKLDG  256 (302)
Q Consensus       179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~-~~~~~~f~~~~~-~~~~i~tk~d~  256 (302)
                      -.+..+-|+|+||......+....+.            +..-..+|+++..|... ....-.+....+ +..++++|+|.
T Consensus        64 ~~~~~~n~iDtPGh~dF~~e~~~al~------------~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          64 FRGHRVFLLDAPGYGDFVGEIRGALE------------AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK  131 (267)
T ss_dssp             ETTEEEEEEECCCSGGGHHHHHHHHH------------HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             ccccceeEEccCchhhhhhhhhhhhc------------ccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc
Confidence            13467889999995443333322221            23455677788877522 222222222333 23568899997


Q ss_pred             CCchh-HHHHhhhHhC
Q psy2881         257 TTKGG-ILAAIAKKYS  271 (302)
Q Consensus       257 ~~~~g-~~~~~~~~~~  271 (302)
                      ....- .+.++...++
T Consensus       132 ~~~~~~~l~~~~~~lg  147 (267)
T d2dy1a2         132 GGDYYALLEDLRSTLG  147 (267)
T ss_dssp             CCCHHHHHHHHHHHHC
T ss_pred             cccchhhhhhHHHHhc
Confidence            54433 3444555556

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.84  E-value=3.3e-05  Score=63.54  Aligned_cols=42  Identities=12%  Similarity=0.055  Sum_probs=33.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHh-HhhhCCCeEEEecccC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLAN-YFKKRKKSVLLAACDT  137 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag-~~~~~~g~V~l~~~d~  137 (302)
                      +++|+++.|.|++|+||||++..++. .....+..+.+...+.
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~   65 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   65 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccC
Confidence            57999999999999999999876654 3445566788877654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=5.5e-05  Score=64.44  Aligned_cols=72  Identities=21%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN  175 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la  175 (302)
                      +..+.-+.|.||+|+|||++++.||..+..  --+.+...++..                    ...+ +......+.+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~--~~~~i~~~~l~~--------------------~~~g-~~~~~l~~~f~   98 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDFVE--------------------MFVG-VGASRVRDMFE   98 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSSTT--------------------SCCC-CCHHHHHHHHH
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCC--CEEEEEhHHhhh--------------------cchh-HHHHHHHHHHH
Confidence            344566889999999999999999987632  123333333211                    0011 11234455667


Q ss_pred             HHHhCCCCeEEEcCC
Q psy2881         176 IAQKKNTDIVIVDTS  190 (302)
Q Consensus       176 ~al~~~~~llllDEP  190 (302)
                      .|....|-+|++||-
T Consensus        99 ~A~~~~P~il~iDei  113 (256)
T d1lv7a_          99 QAKKAAPCIIFIDEI  113 (256)
T ss_dssp             HHHTTCSEEEEETTH
T ss_pred             HHHHcCCEEEEEECh
Confidence            777888999999987

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=2.8e-05  Score=63.93  Aligned_cols=125  Identities=13%  Similarity=0.074  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhC--CCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKR--KKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~--~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      .++++|.-++|||||+..|.+.....  .|++.....  ......|+-+-.  -.........                 
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~--~d~~~eE~~rgi--Ti~~~~~~~~-----------------   63 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGD--IDKAPEERARGI--TINTAHVEYE-----------------   63 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHH--HSCSHHHHHHTC--CCSCEEEEEE-----------------
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhh--cccchHHhcCCe--EEEeeEEEEE-----------------
Confidence            38999999999999999997655422  233321110  001111221111  1111111111                 


Q ss_pred             hCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhH-HHHHHHHHhhcCCCe-E-EEecCC
Q psy2881         179 KKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNT-LSQIKEFSKILRITG-L-IITKLD  255 (302)
Q Consensus       179 ~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~-~~~~~~f~~~~~~~~-~-i~tk~d  255 (302)
                      -.+..+-|+|+||-.....+   .++.+         -...-..+|+++..|... -.+.-.+....++.. + ++||+|
T Consensus        64 ~~~~~i~iiDtPGh~df~~~---~~~~~---------~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D  131 (204)
T d2c78a3          64 TAKRHYSHVDCPGHADYIKN---MITGA---------AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD  131 (204)
T ss_dssp             CSSCEEEEEECCCSGGGHHH---HHHHH---------TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred             eCCeEEEEEeCCCchhhHHH---HHHHH---------HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            24578999999993322222   22222         124456788888888632 122233344566643 4 479999


Q ss_pred             CCC
Q psy2881         256 GTT  258 (302)
Q Consensus       256 ~~~  258 (302)
                      ...
T Consensus       132 ~~~  134 (204)
T d2c78a3         132 MVD  134 (204)
T ss_dssp             GCC
T ss_pred             cCC
Confidence            643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=4.3e-05  Score=61.04  Aligned_cols=35  Identities=29%  Similarity=0.309  Sum_probs=26.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .+++.++.++|++||||||+++.++..    .|-+.+..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~   45 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR   45 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEch
Confidence            467889999999999999999887542    34455544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=1.8e-05  Score=63.43  Aligned_cols=41  Identities=27%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      ..+-+|+|-||+||||||+++.|+..+...+-.+.....+.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~   60 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccc
Confidence            34568999999999999999999998887665665555443

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=9.3e-05  Score=63.22  Aligned_cols=90  Identities=17%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-CCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-TFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAI  174 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (302)
                      ++.|.++-|.||+|+||||++-.++......++.+.+.+.. .++...   ++.++-...--++....  .. +...+.+
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~---a~~~Gvd~d~v~~~~~~--~~-E~~~~~i  124 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPD--TG-EQALEIC  124 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCGGGCEEECCS--SH-HHHHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHH---HHHhCCCHHHEEEecCC--CH-HHHHHHH
Confidence            45789999999999999999999988887777776665544 443322   22222111101122211  22 2222322


Q ss_pred             HHH-HhCCCCeEEEcCCC
Q psy2881         175 NIA-QKKNTDIVIVDTSG  191 (302)
Q Consensus       175 a~a-l~~~~~llllDEP~  191 (302)
                      ... ...+++++++|--+
T Consensus       125 ~~l~~~~~~~liViDSi~  142 (263)
T d1u94a1         125 DALARSGAVDVIVVDSVA  142 (263)
T ss_dssp             HHHHHHTCCSEEEEECGG
T ss_pred             HHHHhcCCCCEEEEECcc
Confidence            221 23678999999764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.76  E-value=1.8e-05  Score=66.21  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             ceecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          93 IFKKCKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        93 ~l~~~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++.+. ++++.|.|||.+||||+++.++-.
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhHHH
Confidence            34443 358899999999999999988754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.76  E-value=2.2e-05  Score=66.40  Aligned_cols=51  Identities=22%  Similarity=0.257  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          69 NTEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        69 ~~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++.+++..+.+.+.......     -....+..+.|.||+||||||+++.||+.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-----~~~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_           7 TDKQFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHhcc-----cCCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45566666666665554322     1335677899999999999999999999774

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=9e-06  Score=63.99  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.+.++.|.||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999999876

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.74  E-value=9.4e-06  Score=64.02  Aligned_cols=30  Identities=20%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      .+|.+|.|+|++||||||+.+.|+..+...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            579999999999999999999999888643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=6.1e-06  Score=66.42  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      |.++.|+||+||||||+++.|...++.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            789999999999999999999877653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.70  E-value=1.5e-05  Score=68.04  Aligned_cols=23  Identities=30%  Similarity=0.687  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      =.++|+|.+|||||||++.|.|.
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            36889999999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.68  E-value=9.9e-06  Score=63.89  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .|+++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999998654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=0.00015  Score=62.23  Aligned_cols=143  Identities=16%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA  177 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a  177 (302)
                      ..++|+|+.|+|||||+-.|...-..  .-|+|. .+..+......+      +..++........             .
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E------~~r~~si~~~~~~-------------~   66 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQE------RERGITITAAVTT-------------C   66 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------------CCCCCCCSEEE-------------E
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHH------HhcCCccccceee-------------e
Confidence            46899999999999999988654332  224442 111111111111      1112211110000             0


Q ss_pred             HhCCCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHH-HHHHHhhcCCC-eEEEecCC
Q psy2881         178 QKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQ-IKEFSKILRIT-GLIITKLD  255 (302)
Q Consensus       178 l~~~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~-~~~f~~~~~~~-~~i~tk~d  255 (302)
                      --.+..+-|+|+||......+....|.            +..-..+|+++..|.+.-.. .=.....+++. .+++||+|
T Consensus        67 ~~~~~~~n~iDtPG~~dF~~e~~~~l~------------~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmD  134 (276)
T d2bv3a2          67 FWKDHRINIIDAPGHVDFTIEVERSMR------------VLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMD  134 (276)
T ss_dssp             EETTEEEEEECCCSSSSCSTTHHHHHH------------HCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             ccCCeEEEEecCCchhhhHHHHHHHHH------------hhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccc
Confidence            124568999999993333222322221            12345678888888643322 22333344443 45779999


Q ss_pred             CC-Cchh-HHHHhhhHhCCce
Q psy2881         256 GT-TKGG-ILAAIAKKYSIPL  274 (302)
Q Consensus       256 ~~-~~~g-~~~~~~~~~~~pv  274 (302)
                      .. +.+. .+-++...++.++
T Consensus       135 r~~ad~~~~l~ei~~~l~~~~  155 (276)
T d2bv3a2         135 KTGADLWLVIRTMQERLGARP  155 (276)
T ss_dssp             STTCCHHHHHHHHHHTTCCCE
T ss_pred             ccccccchhHHHHHHHhCCCe
Confidence            83 3444 4445555566443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.63  E-value=1.1e-05  Score=63.83  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ...|+|+||.||||||+++.|+..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3679999999999999999999876

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.0002  Score=59.42  Aligned_cols=173  Identities=14%  Similarity=0.163  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHH-HHHh---cccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQ-LLIL---GKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~q-l~~~---~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      ++.|.|.=|||||||++.+...  +.+.+|.+.-.|....+.-.. +...   .....-.........+........+.+
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~~   82 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN   82 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHHHH
Confidence            6889999999999999988763  345577776555322110000 0000   000111222232333443333333333


Q ss_pred             HHh--CCCCeEEEcCCC--CccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCChhHHHHHHHHHh-hcCCCeEEE
Q psy2881         177 AQK--KNTDIVIVDTSG--RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEFSK-ILRITGLII  251 (302)
Q Consensus       177 al~--~~~~llllDEP~--d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~~~~~~~~~f~~-~~~~~~~i~  251 (302)
                      ...  .+|+.+++-..|  ++..   ++..+..-...   .....-+-+..++++..+.........+.+ .-..|.+++
T Consensus        83 ~~~~~~~~d~iiIE~sG~~~p~~---l~~~~~~~~~~---~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~ivl  156 (222)
T d1nija1          83 LDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVL---CQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILL  156 (222)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHH---HHHHHHHSHHH---HHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred             HhhccCCcceeEEeecccchhhH---HHHHHHhhhcc---cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCCcccc
Confidence            222  468999997666  4332   33333211000   000112334556676655433332222222 223578999


Q ss_pred             ecCCCCCchhHHHHhhhHh--CCceEEEecCC
Q psy2881         252 TKLDGTTKGGILAAIAKKY--SIPLYFIGIGE  281 (302)
Q Consensus       252 tk~d~~~~~g~~~~~~~~~--~~pv~~~~~gq  281 (302)
                      ||.|-......+...+...  +.||.....|+
T Consensus       157 NK~Dl~~~~~~~~~~l~~lNP~a~Ii~~~~g~  188 (222)
T d1nija1         157 TKTDVAGEAEKLHERLARINARAPVYTVTHGD  188 (222)
T ss_dssp             ECTTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred             cccccccHHHHHHHHHHHHhCCCeEEEeeCCc
Confidence            9999755444455555554  35777766665

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.63  E-value=2.4e-05  Score=65.10  Aligned_cols=36  Identities=33%  Similarity=0.601  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +++|+||.|||||||++.|...+. .++++.+.+.|+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~   37 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT   37 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCc
Confidence            689999999999999999987654 556677766554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.58  E-value=0.00018  Score=61.50  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-CCChhHHHHHHHhcccCCCC----eeecCCCCCHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-TFRAAAYEQLLILGKYNDVP----VISEKKITDPAAIA  170 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-~~~~~~~~ql~~~~~~~~~~----~~~~~~~~~~~~~~  170 (302)
                      ++.|.++-|.||+|+||||++-.++......+|.+.+.+.. .++..       +++.+|+.    ++...  ... +..
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~-------~a~~~Gvd~d~i~~~~~--~~~-E~~  123 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-------YARALGVNTDELLVSQP--DNG-EQA  123 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHTTCCGGGCEEECC--SSH-HHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHH-------HHHHhCCCchhEEEEcC--CCH-HHH
Confidence            46789999999999999999999999888778888777655 34432       22333322    12221  122 223


Q ss_pred             HHHHHHHH-hCCCCeEEEcCCC
Q psy2881         171 FNAINIAQ-KKNTDIVIVDTSG  191 (302)
Q Consensus       171 ~~~la~al-~~~~~llllDEP~  191 (302)
                      .+.+.... ..+++++++|.-+
T Consensus       124 ~~~~~~l~~~~~~~liIiDSi~  145 (268)
T d1xp8a1         124 LEIMELLVRSGAIDVVVVDSVA  145 (268)
T ss_dssp             HHHHHHHHTTTCCSEEEEECTT
T ss_pred             HHHHHHHHhcCCCcEEEEeccc
Confidence            33332222 2468999999875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00043  Score=56.05  Aligned_cols=38  Identities=18%  Similarity=0.029  Sum_probs=33.6

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881         100 FVIMIVGVN-GVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus       100 ~ii~lvGpn-GsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +.+.|.|-+ |+||||+...||..+...+.+|.+.+.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            467899996 99999999999999999999999987654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.5e-05  Score=63.93  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV  130 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V  130 (302)
                      +|.+|.|+|++||||||+.+.|+..+....-..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~   50 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC   50 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence            688999999999999999999999887554433

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.56  E-value=2.5e-05  Score=63.10  Aligned_cols=37  Identities=35%  Similarity=0.484  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      .+|.+|+|+||.||||||+.+.||..+    |-+.+...+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~~g~~   40 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLSAGDL   40 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH----CCceEchhhH
Confidence            567899999999999999999999765    4455554443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.00018  Score=65.06  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      -|+|+|.+|||||||++.|.|.-.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            489999999999999999998643

>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal recognition particle 54 kDa protein, SRP54
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=8.9e-05  Score=53.62  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcCcCCh----HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHH
Q psy2881           8 RLKESLSKTACNLKSLIVNKKIDK----NLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLF----NTEQVRNVLHN   79 (302)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~   79 (302)
                      .|.+++.+.   +.++.+...+++    +.+.+++.+|+++||+..+++.+.+.+++.+.+++..    ..+.+..++.+
T Consensus         9 ~L~~~i~~a---~~~l~~~~~i~E~~I~~~l~eI~~ALLeADVn~~vV~~f~~~Ik~k~~~~~~~~g~n~~q~i~kiV~d   85 (99)
T d1wgwa_           9 DLGRKITSA---LRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFK   85 (99)
T ss_dssp             HHHHHHHHH---HHHHHHCSSCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence            455555444   333334456886    4678999999999999999999999999988776643    34778888888


Q ss_pred             HHHHHhh
Q psy2881          80 LLVNLLK   86 (302)
Q Consensus        80 ~l~~~l~   86 (302)
                      +|.+++.
T Consensus        86 ELv~ll~   92 (99)
T d1wgwa_          86 ELVKVKV   92 (99)
T ss_dssp             HHHHSSC
T ss_pred             HHHHHcC
Confidence            8888765

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.53  E-value=4.1e-05  Score=60.83  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      .++.|.|++||||||++++|+..+...+-++...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~   35 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            4788899999999999999999998666556543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=8.9e-05  Score=63.02  Aligned_cols=71  Identities=23%  Similarity=0.255  Sum_probs=43.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINI  176 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  176 (302)
                      .++.-+.|.||.|+|||++++.+|....   ..+.......        +  ....          ...........+..
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~---~~~~~i~~~~--------l--~~~~----------~g~~~~~l~~~f~~   92 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPE--------I--MSKL----------AGESESNLRKAFEE   92 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEECHHH--------H--TTSC----------TTHHHHHHHHHHHH
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhC---CeEEEEEchh--------h--cccc----------cccHHHHHHHHHHH
Confidence            3444588999999999999999998643   3343332110        0  0000          01112233344556


Q ss_pred             HHhCCCCeEEEcCC
Q psy2881         177 AQKKNTDIVIVDTS  190 (302)
Q Consensus       177 al~~~~~llllDEP  190 (302)
                      |....|-+|++||-
T Consensus        93 A~~~~p~il~iDei  106 (258)
T d1e32a2          93 AEKNAPAIIFIDEL  106 (258)
T ss_dssp             HHHTCSEEEEESSG
T ss_pred             HHhcCCeEEEehhh
Confidence            67788999999997

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.52  E-value=2.5e-05  Score=61.40  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++|-.+.|.||+||||||+.+.|+..+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999999765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.51  E-value=2.6e-05  Score=61.21  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ..+|.|.||+||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.51  E-value=2.5e-05  Score=60.97  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .++.|.||+||||||+++.|+..+   ++.+.+.+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~---~~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL---DNSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS---SSEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc---CCCEEEeh
Confidence            578999999999999999999765   34455443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.50  E-value=0.00015  Score=60.34  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +++|+|...||||||++.|.+...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcc
Confidence            699999999999999999988643

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=0.00027  Score=60.45  Aligned_cols=91  Identities=16%  Similarity=0.181  Sum_probs=56.0

Q ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc-CCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHH
Q psy2881          95 KKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD-TFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNA  173 (302)
Q Consensus        95 ~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d-~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (302)
                      -++.|.++-|.||+|+||||++-.++......++.+.+.+.. .++....+++..-.+  .+ ++....  . .+.+.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d--~i-l~~~~~--~-~E~~~~~  129 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTD--SL-LVSQPD--T-GEQALEI  129 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGG--GC-EEECCS--S-HHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHH--He-EEecCC--C-HHHHHHH
Confidence            357899999999999999999988888888888887776544 344433333321111  11 122211  1 2223332


Q ss_pred             HHHH-HhCCCCeEEEcCCC
Q psy2881         174 INIA-QKKNTDIVIVDTSG  191 (302)
Q Consensus       174 la~a-l~~~~~llllDEP~  191 (302)
                      +... ...+++++++|.-+
T Consensus       130 ~~~l~~~~~~~liIiDSi~  148 (269)
T d1mo6a1         130 ADMLIRSGALDIVVIDSVA  148 (269)
T ss_dssp             HHHHHHTTCEEEEEEECST
T ss_pred             HHHHHhcCCCCEEEEeccc
Confidence            2221 23568999999876

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.49  E-value=2.9e-05  Score=59.85  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +++.|.||+||||||+++.|+.   ...+.+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d   35 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRD   35 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---hCCCCEEechH
Confidence            5788999999999999998754   33455555443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.9e-05  Score=59.94  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.|+||+||||||+.+.||-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999999876

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=2.4e-05  Score=65.36  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL  131 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~  131 (302)
                      +|+..+|+|++|+|||||++.|.+-.....|.|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            4789999999999999999999876544444443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=2.1e-06  Score=69.07  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=26.1

Q ss_pred             CcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          91 PLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        91 ~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.++++.+| ++.|+|||||||||++..|.-.+-
T Consensus        17 ~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          17 ARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            345555544 888999999999999999987654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00016  Score=59.36  Aligned_cols=40  Identities=23%  Similarity=0.241  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .+|.+|+|-|+-||||||+++.|+..+...+-+|.+...+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p   40 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP   40 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3688999999999999999999999998877777765433

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.37  E-value=0.00012  Score=63.99  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      ++.-+.|+||+|||||++++.||..+.  .--+.+....
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~   84 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK   84 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc--cchhcccccc
Confidence            445677999999999999999998764  2234555444

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.36  E-value=4.7e-05  Score=59.51  Aligned_cols=22  Identities=45%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++|+||.||||||+.+.|+-.+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6699999999999999998765

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=6.1e-05  Score=60.88  Aligned_cols=37  Identities=35%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      ++-.+++|+||.||||||..+.|+..+    |-+.+...|.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gdl   42 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGDL   42 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEehhHH
Confidence            455789999999999999999999876    4455654444

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.2e-05  Score=62.38  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .|.++.|+||+||||||+++.|....+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            488999999999999999999887654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=4.4e-05  Score=65.89  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=29.1

Q ss_pred             hCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeehh
Q psy2881         179 KKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFLI  224 (302)
Q Consensus       179 ~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lv  224 (302)
                      ...+.++++|||-   ++.....+.+.|++..+  +.-++++||...++
T Consensus       239 ~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~  285 (308)
T d1e69a_         239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVM  285 (308)
T ss_dssp             TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGG
T ss_pred             hccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH
Confidence            4566788888884   66667777777776653  23456777866553

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.34  E-value=7.6e-05  Score=63.11  Aligned_cols=71  Identities=18%  Similarity=0.124  Sum_probs=42.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIA  177 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a  177 (302)
                      +..-+.|.||.|+|||++++.||.....  --+.+.+.+..                    .............+.+..|
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~~--------------------~g~~~~~~~~~i~~if~~A   96 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICSPDKM--------------------IGFSETAKCQAMKKIFDDA   96 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEECGGGC--------------------TTCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcccc--ccccccccccc--------------------ccccccchhhhhhhhhhhh
Confidence            4456889999999999999999986531  11333322211                    0000111122334456667


Q ss_pred             HhCCCCeEEEcCC
Q psy2881         178 QKKNTDIVIVDTS  190 (302)
Q Consensus       178 l~~~~~llllDEP  190 (302)
                      ....|-+|++||-
T Consensus        97 ~~~~p~il~iDEi  109 (246)
T d1d2na_          97 YKSQLSCVVVDDI  109 (246)
T ss_dssp             HTSSEEEEEECCH
T ss_pred             hhcccceeehhhh
Confidence            7778899999995

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=9.8e-05  Score=64.47  Aligned_cols=42  Identities=33%  Similarity=0.513  Sum_probs=35.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh--CCCeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK--RKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~--~~g~V~l~~~d~~  138 (302)
                      +.+-++||.|++||||||+.+.|..++..  .+-+|.+...|-|
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            45689999999999999999999999873  4567888877755

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.33  E-value=0.00043  Score=60.52  Aligned_cols=69  Identities=13%  Similarity=0.188  Sum_probs=46.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      ..++.++||.|+|||.+.+.||+.+...-.-+.+.+.++..                     .+..+....+++.+..|.
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~---------------------~~~G~~e~~~~~~f~~a~  181 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS---------------------GYNTDFNVFVDDIARAML  181 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST---------------------TCBCCHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh---------------------cccchHHHHHHHHHHHHh
Confidence            34666789999999999999999875333345666655431                     122244445555555554


Q ss_pred             hCCCCeEEEcCC
Q psy2881         179 KKNTDIVIVDTS  190 (302)
Q Consensus       179 ~~~~~llllDEP  190 (302)
                        +|.+|++||-
T Consensus       182 --~~~ilf~DEi  191 (321)
T d1w44a_         182 --QHRVIVIDSL  191 (321)
T ss_dssp             --HCSEEEEECC
T ss_pred             --hccEEEeehh
Confidence              4789999997

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.30  E-value=0.00046  Score=51.51  Aligned_cols=39  Identities=21%  Similarity=0.197  Sum_probs=27.7

Q ss_pred             cCCCeEEEEEcCCCCCHHHHH-HHHHhHhhhCCCeEEEec
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTI-GKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll-~~Lag~~~~~~g~V~l~~  134 (302)
                      +++|+.+.|.+|+|||||+.+ ..+.......+..+.+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            367899999999999999665 344445555566666654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00019  Score=61.17  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHH
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAIN  175 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la  175 (302)
                      +.++.-+.|.||+|+|||++++.+|+.+.   -.+.....     +   .+  ..          ....+........+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~---~~~~~~~~-----~---~l--~~----------~~~~~~~~~l~~~f~   94 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG-----P---EL--LT----------MWFGESEANVREIFD   94 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT---CEEEEECH-----H---HH--HT----------SCTTTHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC---CcEEEEEH-----H---Hh--hh----------ccccchHHHHHHHHH
Confidence            34455688999999999999999999873   22322211     0   00  00          111233334445566


Q ss_pred             HHHhCCCCeEEEcCC
Q psy2881         176 IAQKKNTDIVIVDTS  190 (302)
Q Consensus       176 ~al~~~~~llllDEP  190 (302)
                      .|....|-+|++||-
T Consensus        95 ~A~~~~p~il~idei  109 (265)
T d1r7ra3          95 KARQAAPCVLFFDEL  109 (265)
T ss_dssp             HHHHTCSEEEEESSG
T ss_pred             HHHhcCCcceeHHhh
Confidence            777889999999997

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.00016  Score=60.36  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +...+.|.||+|+||||+++.||..+   +..+.....
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~~   85 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA   85 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH---Hhhhhcccc
Confidence            33578899999999999999999865   344554433

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.26  E-value=0.00011  Score=62.20  Aligned_cols=69  Identities=23%  Similarity=0.259  Sum_probs=41.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQ  178 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al  178 (302)
                      +.-+.|.||.|+|||++++.||..+.   -.+.....       ......             +..+....+.+.+..|.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~---~~~~~i~~-------~~l~~~-------------~~g~~~~~l~~~f~~a~   98 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG-------SDFVEM-------------FVGVGAARVRDLFETAK   98 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH-------HHHHHS-------------CTTHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC---CCEEEEEh-------HHhhhc-------------cccHHHHHHHHHHHHHH
Confidence            44588999999999999999998653   22322211       111110             00122233445556666


Q ss_pred             hCCCCeEEEcCC
Q psy2881         179 KKNTDIVIVDTS  190 (302)
Q Consensus       179 ~~~~~llllDEP  190 (302)
                      ...|-+|++||.
T Consensus        99 ~~~p~Ii~iDei  110 (247)
T d1ixza_          99 RHAPCIVFIDEI  110 (247)
T ss_dssp             TSSSEEEEEETH
T ss_pred             HcCCEEEEEECh
Confidence            678889999985

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.24  E-value=6.5e-05  Score=60.71  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      .++.++.|+||.||||||..+.|+..+    |-+.+...+..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~ll   43 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDLL   43 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccHHH
Confidence            467899999999999999999998764    44556554443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00012  Score=59.84  Aligned_cols=39  Identities=26%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhC-----CCeEEEecccC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKR-----KKSVLLAACDT  137 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~-----~g~V~l~~~d~  137 (302)
                      |=++||.||+||||||+.+.|+..+...     .-++.+...|-
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~   45 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   45 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccc
Confidence            5689999999999999999998877532     23466666653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.22  E-value=0.0001  Score=59.23  Aligned_cols=37  Identities=35%  Similarity=0.415  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +|-.+.|+||.||||||..+.||-.+    |=+.+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~~gdll   38 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLATGDML   38 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEEHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh----CCeEEeHHHHH
Confidence            56667799999999999999999765    44555544544

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00025  Score=57.84  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV  130 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V  130 (302)
                      +|.+|+|-|+-||||||+++.|+..+...+.+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~   33 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRD   33 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCe
Confidence            588999999999999999999999988766443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.16  E-value=0.00037  Score=58.10  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCC
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKK  128 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g  128 (302)
                      .+..+.|.||.|+||||+++.++..+....+
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            3457889999999999999999998875443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00011  Score=65.85  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      +.+..+.+.+|+|||||||||++..|+
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            445556699999999999999999986

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.15  E-value=2.9e-05  Score=65.00  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEE
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVL  131 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~  131 (302)
                      +|...+|+|++|+|||||++.|.+-.....|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5778899999999999999999876544444443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.14  E-value=0.00011  Score=57.61  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.|+|+.||||||+.+.||..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999999887

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00027  Score=58.58  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA  141 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~  141 (302)
                      -+.|.||+|+||||+++.||..+...  .+.+.+.+..+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~--~~~~~~~~~~~~~   75 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLVKQG   75 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCCSHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC--cccccCcccccHH
Confidence            36799999999999999999877543  3445566655443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00025  Score=60.54  Aligned_cols=42  Identities=31%  Similarity=0.365  Sum_probs=38.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      +.+.++.+.|..|+||||+...||..+...+.+|.+.+.|+.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457799999999999999999999999999999999999974

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.12  E-value=9.7e-05  Score=60.81  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEeccc
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACD  136 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d  136 (302)
                      ++|.++.|.|++||||||+.+.|+..+.. .+-.+.+.+.|
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD   62 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   62 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch
Confidence            68999999999999999999999976643 33344444334

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=0.00077  Score=58.78  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          70 TEQVRNVLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        70 ~~~~~~~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++.+.+.+...+..... -+.+   .-.+..++.++||+|+|||.+.+.||..+-
T Consensus        28 Q~~ai~~v~~~i~~~~~-~l~~---~~kp~~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          28 QDEAIRAVADAIRRARA-GLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             CHHHHHHHHHHHHHHGG-GCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-CCCC---CCCCceEEEEECCCcchHHHHHHHHHHHhc
Confidence            34444555555544332 1211   113445788999999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00014  Score=58.32  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      -+++|+||.||||||..+.||..+    |-..+...|.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g~l   35 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY----GYTHLSAGEL   35 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh----CCceEcHHHH
Confidence            478999999999999999999866    4455554443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00012  Score=58.96  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|+||+||||||+++.|+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999977653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.08  E-value=0.00013  Score=58.63  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      |-.+.|+||.||||||+.+.|+-.+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998776

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.08  E-value=0.00026  Score=59.90  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ..|+|.|..|+||||+...||..+...+.+|.+.+.|++
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            468899999999999999999999988889999999986

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00017  Score=57.71  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ..+.|+||+||||||+++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            478899999999999999988643

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.05  E-value=9.1e-05  Score=63.94  Aligned_cols=38  Identities=21%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ++||.|++||||||+.+.|...+...+-++.+...|-|
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            89999999999999999999999877766666666654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.00018  Score=56.89  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.|+||.||||||..+.||-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00017  Score=58.28  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|+||+||||||+++.|+..++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            66999999999999999987653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00018  Score=56.51  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|+|+.||||||+.+.||..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44779999999999999998773

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0011  Score=57.71  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +..+++|+||+|+|||.|++.||..+.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhcc
Confidence            445889999999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.01  E-value=0.00017  Score=56.82  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.|+|++||||||+.+.||..+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999776

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.00  E-value=0.00019  Score=57.09  Aligned_cols=23  Identities=26%  Similarity=0.609  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.|+||.||||||..+.||..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999876

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0013  Score=53.82  Aligned_cols=42  Identities=14%  Similarity=0.064  Sum_probs=31.6

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhh------hCCCeEEEecccC
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFK------KRKKSVLLAACDT  137 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~------~~~g~V~l~~~d~  137 (302)
                      +++|+++.|.||+||||||++-.++....      ..++.+.+.....
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~   78 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG   78 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecc
Confidence            57899999999999999999988875432      1245666665543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.99  E-value=0.00017  Score=57.94  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++|+|++|||||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999973

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00046  Score=58.50  Aligned_cols=41  Identities=32%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      ...++.+.|..|+||||+...||..+...+.+|.+.+.|++
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34788888999999999999999999988889999999976

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.95  E-value=0.00057  Score=56.19  Aligned_cols=96  Identities=23%  Similarity=0.259  Sum_probs=56.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHhCC
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQKKN  181 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~~~  181 (302)
                      +.|.||.|+|||-|+..++..+...+..+.+.....+    ..++   .+..     ..   .... ..     .....+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~-----~~---~~~~-~~-----~~~~~~   97 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF----AQAM---VEHL-----KK---GTIN-EF-----RNMYKS   97 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH----HHHH---HHHH-----HH---TCHH-HH-----HHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH----HHHH---HHHH-----Hc---cchh-hH-----HHHHhh
Confidence            6799999999999999999988766555555432211    1111   1000     00   0111 11     123457


Q ss_pred             CCeEEEcCCC----CccchHHHHHHHHHHHHHhchhhccccc
Q psy2881         182 TDIVIVDTSG----RLSTQSHLMRELKKIKKVIEKKIFELPY  219 (302)
Q Consensus       182 ~~llllDEP~----d~~~~~~l~~~L~~l~~~~~~~i~~~~h  219 (302)
                      .++|++|+-.    ....+..+...+..+... ++.+++++.
T Consensus        98 ~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~-~~~iiits~  138 (213)
T d1l8qa2          98 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASD  138 (213)
T ss_dssp             CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             ccchhhhhhhhhcCchHHHHHHHHHHHHHhhc-cceEEEecC
Confidence            8999999875    455566677777766543 555555554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.00018  Score=59.83  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      -+.|.||.|+||||+++.+|+.+...  -..+.+.+..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~   72 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIE   72 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCccc
Confidence            46799999999999999999876422  2444444443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.92  E-value=0.00067  Score=55.85  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.|.||+|+||||+++.+|..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            377999999999999999998764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.91  E-value=0.00045  Score=59.12  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFR  139 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~  139 (302)
                      .++++.|..|+||||+...||..+...+.+|.+.+.|++.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            4677899999999999999999998888899999999863

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00025  Score=57.69  Aligned_cols=37  Identities=32%  Similarity=0.400  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAA  141 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~  141 (302)
                      ||+|.||.||||||..+.|+..+.    =..+.+-|++|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g----l~~iStGdLlR~~   41 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ----WHLLDSGAIYRVL   41 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT----CEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CcEECHHHHHHHH
Confidence            899999999999999999998773    3456666666643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.00085  Score=54.06  Aligned_cols=37  Identities=38%  Similarity=0.529  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDT  137 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~  137 (302)
                      +|+|-|+-||||||+++.|+..+...+-+|.+...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~   38 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR   38 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            5889999999999999999999887776777765443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.00029  Score=55.92  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.|+||.||||||..+.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37799999999999999999877

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00045  Score=63.20  Aligned_cols=26  Identities=38%  Similarity=0.616  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.-+.++||+|||||-+++.||+.+.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            34688999999999999999999874

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.87  E-value=0.00022  Score=56.43  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -|+|+|++|||||||++.|.|
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999986

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.00026  Score=55.63  Aligned_cols=22  Identities=41%  Similarity=0.617  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .|+|+|+.|||||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.85  E-value=0.00025  Score=56.92  Aligned_cols=27  Identities=37%  Similarity=0.677  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++-+|+|-|+-||||||+++.|+..+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            467799999999999999999998765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0003  Score=56.33  Aligned_cols=29  Identities=21%  Similarity=0.078  Sum_probs=25.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.+|+++.|.||+|+||||++..++....
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999887654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00035  Score=55.34  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .+.|+||.||||||..+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999998765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00031  Score=53.77  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++|+|++|||||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3679999999999999999873

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.78  E-value=0.00033  Score=53.66  Aligned_cols=21  Identities=43%  Similarity=0.583  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhH
Q psy2881         102 IMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++|+|+.|||||||++.+++-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00034  Score=55.02  Aligned_cols=21  Identities=48%  Similarity=0.642  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      +|+|+|.+|||||||++.|.|
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999987

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.78  E-value=0.00033  Score=53.99  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .++|+|.+|||||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.77  E-value=0.00038  Score=56.84  Aligned_cols=38  Identities=32%  Similarity=0.348  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAA  142 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~  142 (302)
                      +++|-||.||||||..+.||..+    |=..+.+-+++|..+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l----g~~~istGdl~R~~a   42 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF----GFTYLDTGAMYRAAT   42 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH----CCEEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----CCcEECHHHHHHHHH
Confidence            57888999999999999999887    335667667776544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.76  E-value=0.00037  Score=56.11  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=26.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTF  138 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~  138 (302)
                      -.++|+||.||||||+.+.||-.+    |-+.+...|..
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~----g~~~is~gdll   41 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF----ELKHLSSGDLL   41 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB----CCEEEEHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHH
Confidence            367799999999999999999765    34455444443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.0002  Score=57.00  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      |+|+|+.+||||||++.|+|
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.74  E-value=0.00034  Score=54.85  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +.-.++|+|++|||||||++.+.+-
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446889999999999999999764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00039  Score=56.01  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|+.|||||||++.|.+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            678999999999999999986

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.73  E-value=0.0004  Score=54.92  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +|+|+|..|||||||++.|.|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999873

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00047  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      |=-++++|+.|||||||++.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345889999999999999999863

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.0023  Score=54.84  Aligned_cols=42  Identities=31%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh---CCCeEEEecccCC
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK---RKKSVLLAACDTF  138 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~---~~g~V~l~~~d~~  138 (302)
                      +.+-++||-|+.|||||||.+.|...+..   ..-.|.+...|-+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            45679999999999999999988766543   2235777666654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00047  Score=54.70  Aligned_cols=32  Identities=31%  Similarity=0.498  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .+.|+||.||||||..+.|+-.+    |-+.+...|
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~~d   35 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLATGD   35 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----CCceEeccc
Confidence            36688999999999999999876    445555444

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.0014  Score=51.11  Aligned_cols=44  Identities=18%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhhccCCCcceecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          76 VLHNLLVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        76 ~l~~~l~~~l~~~l~~i~l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+.+.+.+.+.      +...++|.+++|.|+=||||||+.+.++.-+..
T Consensus        16 ~lg~~la~~l~------~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          16 RFGKKFAEILL------KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             HHHHHHHHHHH------HHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH------hccCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            34555555552      223468999999999999999999999987753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.63  E-value=0.0055  Score=51.98  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      ...+++|+|+.|+||||+++.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3579999999999999999998765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.61  E-value=0.0011  Score=58.94  Aligned_cols=80  Identities=19%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             HHHHHHHHHCCCChHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH---HhhccCCCcceecCCCeEEEEEcCCCC
Q psy2881          35 NELESDLLKADVGFETTQF-LLNELKKIIYSKKLFNTEQVRNVLHNLLVN---LLKSLEKPLIFKKCKPFVIMIVGVNGV  110 (302)
Q Consensus        35 ~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~l~~~l~~i~l~~~~g~ii~lvGpnGs  110 (302)
                      .+|++.|-+.=++.+-|.+ ++..++++++-.      .+...++.....   .-...+++  -+.+++ .+.++||+||
T Consensus         9 ~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~------~~~~~~r~~~~~~~~~~~~~~~~--~~~p~~-niLfiGPTGv   79 (364)
T d1um8a_           9 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRL------SFKEKLKKQDNQDSNVELEHLEE--VELSKS-NILLIGPTGS   79 (364)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHH------HHHHHHHHHCSHHHHHHHHHHHH--TTCCCC-CEEEECCTTS
T ss_pred             HHHHHHhCCeecChHHHHHHHHHHHHHHHHHH------HHHHHhhcccccccccccccccc--ccCCCc-ceeeeCCCCc
Confidence            5677788888888777654 566665554311      000111110000   00001111  122333 5779999999


Q ss_pred             CHHHHHHHHHhHh
Q psy2881         111 GKTTTIGKLANYF  123 (302)
Q Consensus       111 GKTTll~~Lag~~  123 (302)
                      |||-+.+.||.++
T Consensus        80 GKTElAk~LA~~~   92 (364)
T d1um8a_          80 GKTLMAQTLAKHL   92 (364)
T ss_dssp             SHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhhc
Confidence            9999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.58  E-value=0.00047  Score=53.58  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|+.|||||||++.+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999865

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00072  Score=55.47  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .+|.+|+|-|+-||||||+++.|+-.+..
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            37999999999999999999999988764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.55  E-value=0.00089  Score=50.41  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      ..++..|.+|+|||||+.+-.+   +...+++|.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~---~~~~~~~vli~   39 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA---YAAQGYKVLVL   39 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH---HHTTTCCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH---HHHcCCcEEEE
Confidence            4467788999999999876433   23445666665

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00033  Score=55.46  Aligned_cols=21  Identities=19%  Similarity=0.426  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhH
Q psy2881         102 IMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~  122 (302)
                      |+|+|..|||||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.00086  Score=53.04  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +=.++|+|..|||||||++.|.+.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            345899999999999999999863

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.00078  Score=53.76  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      .+-++||.|+.||||||.++.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35799999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00067  Score=55.76  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|.||+|+||||+++.++..+.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHc
Confidence            67999999999999999998753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00045  Score=56.98  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++.+|+|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467999999999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.40  E-value=0.0017  Score=53.57  Aligned_cols=41  Identities=22%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhh------CCCeEEEeccc
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKK------RKKSVLLAACD  136 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~------~~g~V~l~~~d  136 (302)
                      +++|+++.|.||+||||||+.-.++.....      .++.+.+....
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~   79 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE   79 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEecc
Confidence            578999999999999999999877754431      24566665544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0009  Score=54.05  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -|+|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999863

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.33  E-value=0.0012  Score=54.78  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.++.|.||.|+|||||++.++...
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4688999999999999999887654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.33  E-value=0.0012  Score=51.42  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      +.-.++|+|..|||||||++.|.+
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            345688999999999999999876

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.31  E-value=0.0042  Score=52.62  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=25.4

Q ss_pred             cCCCeEEEEEcCCCCCHHHH-H-HHHHhHhhhCCCeEEEe
Q psy2881          96 KCKPFVIMIVGVNGVGKTTT-I-GKLANYFKKRKKSVLLA  133 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTl-l-~~Lag~~~~~~g~V~l~  133 (302)
                      +.+|+.+.+.+|+|||||+. + ..+.... ..++++.+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~-~~~~~~lvi   44 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI-KRGLRTLIL   44 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HHTCCEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH-hcCCEEEEE
Confidence            35789999999999999973 2 3333333 345667665

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0011  Score=54.34  Aligned_cols=24  Identities=38%  Similarity=0.610  Sum_probs=20.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      +.|.||+|+||||+++.++..+..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhc
Confidence            668999999999999999987653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.28  E-value=0.0011  Score=51.56  Aligned_cols=21  Identities=33%  Similarity=0.494  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++|+|+.|||||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            377999999999999998865

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.25  E-value=0.00081  Score=56.26  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ++.|.||.|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            566679999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0011  Score=51.69  Aligned_cols=20  Identities=40%  Similarity=0.659  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.|||||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0012  Score=51.58  Aligned_cols=20  Identities=40%  Similarity=0.770  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.|||||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0024  Score=54.24  Aligned_cols=26  Identities=35%  Similarity=0.362  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      .-+.||||.|+|||+++.-+|..+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            35779999999999999999987653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0018  Score=53.24  Aligned_cols=28  Identities=18%  Similarity=-0.037  Sum_probs=25.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +++|.++.|.||+|+||||+...++...
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999888643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0014  Score=53.55  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +.|.||.|+||||+++.++..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            66999999999999999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0014  Score=51.46  Aligned_cols=20  Identities=25%  Similarity=0.742  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.|||||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.13  E-value=0.002  Score=57.20  Aligned_cols=34  Identities=24%  Similarity=0.092  Sum_probs=28.2

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL  132 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l  132 (302)
                      ++++..++|.||.|+||||+.+.||+.+.   |++.-
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~  184 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALN  184 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEEC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence            46677999999999999999999999874   55543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0012  Score=54.59  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +.|.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999999865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.00091  Score=52.40  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .-.|+|+|+++||||||++.|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0016  Score=50.44  Aligned_cols=20  Identities=30%  Similarity=0.642  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.|||||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.05  E-value=0.0019  Score=52.78  Aligned_cols=28  Identities=25%  Similarity=0.210  Sum_probs=25.1

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +++|+++.|.|++|+||||++-.+|.-.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999988644

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0017  Score=50.49  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|+.|||||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999998875

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.021  Score=48.28  Aligned_cols=43  Identities=30%  Similarity=0.235  Sum_probs=32.0

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhh-CCCeEEEeccc
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKK-RKKSVLLAACD  136 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~~g~V~l~~~d  136 (302)
                      +.+.+|+.++|+|+.|+||||++..++.-... +.+-+.+.+..
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iG  106 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG  106 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEES
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEec
Confidence            45779999999999999999999988876443 33444444443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.0004  Score=53.60  Aligned_cols=21  Identities=43%  Similarity=0.661  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhH
Q psy2881         102 IMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++|+|..|||||||++.|.|.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.01  E-value=0.0013  Score=51.47  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -.++++|+.|||||||++.+.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3688999999999999998854

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0017  Score=51.32  Aligned_cols=20  Identities=35%  Similarity=0.635  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++|+|+.|||||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.94  E-value=0.0019  Score=52.28  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKL  119 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~L  119 (302)
                      -++||.|+.||||||.++.+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47999999999999987766

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0019  Score=50.04  Aligned_cols=20  Identities=30%  Similarity=0.700  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|.+|||||||++.+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.002  Score=50.47  Aligned_cols=20  Identities=30%  Similarity=0.622  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.||||||+++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            77999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.91  E-value=0.0019  Score=51.02  Aligned_cols=21  Identities=33%  Similarity=0.248  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|+..||||||++.|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999986

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.002  Score=50.17  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..|||||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0021  Score=50.16  Aligned_cols=21  Identities=33%  Similarity=0.675  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|+.|||||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.87  E-value=0.037  Score=45.18  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=37.3

Q ss_pred             CCCeEEEcCCCCccchHHHHHHHHHHHHHhchhhccccceeehhhcCCCCh-hHHHHHHHHHhhcCCCe--EEEecCCCC
Q psy2881         181 NTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQ-NTLSQIKEFSKILRITG--LIITKLDGT  257 (302)
Q Consensus       181 ~~~llllDEP~d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~lvl~~~~g~-~~~~~~~~f~~~~~~~~--~i~tk~d~~  257 (302)
                      +..+-|+|+||-.....++   +..+         ....-..+|+++..|. ..-.+.-.....+++..  ++++|+|..
T Consensus        88 ~~~~~iiD~PGH~dfv~~~---~~g~---------~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~  155 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNM---ATGA---------STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN  155 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHH---HHHH---------TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred             ceEEEEEeccchhhhhhhh---cccc---------ccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccc
Confidence            4578999999943332222   2211         2244556777888775 22222233344667665  467999985


Q ss_pred             C
Q psy2881         258 T  258 (302)
Q Consensus       258 ~  258 (302)
                      .
T Consensus       156 ~  156 (222)
T d1zunb3         156 G  156 (222)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0022  Score=49.75  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..|||||||++.+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0022  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      --++|+|+.|||||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0024  Score=51.80  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~La  120 (302)
                      -++||+|+.||||||.++.+.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            489999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0037  Score=56.05  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .-++|+|++|||||++++.+.......++.+.+.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            34889999999999999877655555566666654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0024  Score=49.83  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++|+|..|||||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0026  Score=54.47  Aligned_cols=33  Identities=18%  Similarity=0.076  Sum_probs=28.6

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      +.+.+|+..+|+|+.|+||||++..|+.....+
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            456789999999999999999999999877643

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0026  Score=49.10  Aligned_cols=20  Identities=30%  Similarity=0.532  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|..|||||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0027  Score=49.23  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++|+|..||||||+++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0027  Score=49.42  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhH
Q psy2881         102 IMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~  122 (302)
                      ++++|..|||||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999988764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0033  Score=51.72  Aligned_cols=27  Identities=30%  Similarity=0.397  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      |.+++|=|+=||||||+++.|+-.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            579999999999999999999987653

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.01  Score=44.66  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +|.+..++||=.|||||-|-..+..+...+.+|.+..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            5889999999999999998888887777777777765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0028  Score=49.46  Aligned_cols=20  Identities=20%  Similarity=0.587  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|..||||||+++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0029  Score=48.78  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|..|||||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.003  Score=48.98  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|..|||||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998864

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.64  E-value=0.13  Score=40.25  Aligned_cols=33  Identities=36%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh-hhCCCeEEEec
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF-KKRKKSVLLAA  134 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~-~~~~g~V~l~~  134 (302)
                      ..+++|+|+|||.+...++... ...++++.+..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            3477999999998666555433 34566777653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.64  E-value=0.003  Score=49.84  Aligned_cols=20  Identities=40%  Similarity=0.780  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|..|||||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.003  Score=49.49  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|.+|||||||+..+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0033  Score=48.74  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++|+|..|||||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.59  E-value=0.0023  Score=50.43  Aligned_cols=24  Identities=42%  Similarity=0.699  Sum_probs=19.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      ++---++++|+.|||||||++.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            344568899999999999998874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0031  Score=50.30  Aligned_cols=20  Identities=25%  Similarity=0.712  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++|+|+.|||||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0033  Score=49.32  Aligned_cols=21  Identities=33%  Similarity=0.718  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|..|||||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0033  Score=48.88  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.|||||||++.+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0033  Score=49.07  Aligned_cols=20  Identities=25%  Similarity=0.700  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.||||||+++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0032  Score=49.20  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      -++++|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999887643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.51  E-value=0.0017  Score=56.55  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      -+.|+||.|+||||+++.+++++++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            4789999999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0036  Score=48.91  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++|+|..|||||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.47  E-value=0.0022  Score=50.09  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      --+.++|+.||||||+++.+..
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0038  Score=48.50  Aligned_cols=21  Identities=19%  Similarity=0.518  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..|||||||+..+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998874

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.016  Score=51.58  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      -..||||.|+|||+++.-||..+.
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999998887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0043  Score=48.12  Aligned_cols=21  Identities=19%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..|||||||+..+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0045  Score=48.09  Aligned_cols=20  Identities=40%  Similarity=0.745  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|+.||||||+++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0045  Score=48.74  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|..|||||||++.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999988765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0068  Score=49.09  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      +..+.|.||.|+||||+++.+|..+-..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~~   51 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLCQ   51 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcccc
Confidence            4568899999999999999999987533

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0048  Score=47.97  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..||||||+++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            477999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0026  Score=49.69  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|+.|||||||++.++.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.22  E-value=0.0066  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      .|.-++|.|++|+||||+...+.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            47789999999999999876544

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0057  Score=47.27  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..|||||||+..+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999998764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.11  E-value=0.007  Score=47.95  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      .|.-+.|.||+|+||||+...+.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            57789999999999999986654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.10  E-value=0.0069  Score=47.47  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKK  128 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g  128 (302)
                      -+.++|..||||||+++.+..-..|+.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            3789999999999999988765556655

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.08  E-value=0.0052  Score=50.20  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh-HhhhCCC
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN-YFKKRKK  128 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag-~~~~~~g  128 (302)
                      .-+.++|++||||||+++.+.. ...|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            3578999999999999998743 3346544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0033  Score=49.07  Aligned_cols=20  Identities=30%  Similarity=0.703  Sum_probs=8.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|..|||||||+..+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.02  E-value=0.0064  Score=47.20  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..||||||+++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0065  Score=47.74  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|..|||||||+..+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999997765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0085  Score=49.40  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      +..+.|.||+|+||||+++.++..+-..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            3467799999999999999999877543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0063  Score=48.01  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++|+|..|||||||+..+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999988754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.0059  Score=48.28  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh--hhCCC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF--KKRKK  128 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~--~~~~g  128 (302)
                      -+.++|..||||||++..+.-..  .|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            47799999999999999984322  25555

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0069  Score=48.00  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..|||||||+..+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.87  E-value=0.0071  Score=47.52  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++++|..||||||++..+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999987754

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.86  E-value=0.023  Score=43.14  Aligned_cols=38  Identities=21%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +.|.+-.++||=.|||||-|-..+..+...+.+|.+..
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            46899999999999999998888888887777888765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.77  E-value=0.0086  Score=49.12  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++||.|+-||||||..+.|+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999888854

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.031  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      -++|+|.-|+|||||+..|..
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            499999999999999998853

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.67  E-value=0.011  Score=46.53  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLA  120 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~La  120 (302)
                      .|.-+.|.|++|+||||+...+.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            47789999999999999875543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0075  Score=51.28  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .+|+++||.++|||||++.|.|.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            58999999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.011  Score=47.60  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      -+.||||.|+|||+++.-||..+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            578999999999999999998775

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.45  E-value=0.0093  Score=48.97  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .|+-+.+++|+|+|||+..-..+-.....++++.+..
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            3666779999999999876555544445566776653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=0.023  Score=48.06  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          96 KCKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        96 ~~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +..++ ++++|.-.|||||+++.|+|.-
T Consensus        24 ~~~P~-ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          24 LDLPQ-IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCCE-EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCCe-EEEEcCCCCCHHHHHHHHhCCC
Confidence            34454 6699999999999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.25  E-value=0.012  Score=46.17  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -+.++|..||||||++..+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3679999999999999988654

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.97  E-value=0.1  Score=41.52  Aligned_cols=85  Identities=18%  Similarity=-0.036  Sum_probs=42.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCChhHHHHHHHhcccCCCC---eeecCCCCC------HHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVP---VISEKKITD------PAAIAF  171 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~~~~~ql~~~~~~~~~~---~~~~~~~~~------~~~~~~  171 (302)
                      ...+..|+|+|||-+...++..+   .+++.+.. +  +....+|+..-.+..+..   .+.......      ..... 
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~Liv~-p--~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~-  159 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVV-P--TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSA-  159 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEE-S--SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHH-
T ss_pred             CcEEEeCCCCCceehHHhHHHHh---cCceeEEE-c--ccchHHHHHHHHHhhcccchhhcccccccccccccceehhh-
Confidence            34578899999997765554333   45666653 2  233444543322222211   111110000      01111 


Q ss_pred             HHHHHHHhCCCCeEEEcCCCC
Q psy2881         172 NAINIAQKKNTDIVIVDTSGR  192 (302)
Q Consensus       172 ~~la~al~~~~~llllDEP~d  192 (302)
                      ......+..+.++||+||.-.
T Consensus       160 ~~~~~~~~~~~~lvIiDEaH~  180 (206)
T d2fz4a1         160 YVNAEKLGNRFMLLIFDEVHH  180 (206)
T ss_dssp             HHTHHHHTTTCSEEEEECSSC
T ss_pred             hhhhHhhCCcCCEEEEECCee
Confidence            112234567899999999863

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.92  E-value=0.12  Score=42.47  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      -+.|.|+.|+|||++.+.|...-..........++
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~   59 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV   59 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCcccccccchh
Confidence            47899999999999999998765554444433333

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.82  E-value=0.016  Score=50.43  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEeccc
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACD  136 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d  136 (302)
                      .|.|=|+=||||||+++.|+..+...+..|.+...+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            478889999999999999999887766677776543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.81  E-value=0.028  Score=48.92  Aligned_cols=32  Identities=31%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      .|.|=|+=||||||+++.|+..+.... .+.+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            567889999999999999999887655 45444

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.71  E-value=0.031  Score=47.23  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=30.4

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      +.+.+|+.++|+|+.|+|||+++..++.....+...+.+.+.
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~i  103 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAI  103 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEE
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeeee
Confidence            567899999999999999999987655443344444444443

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.70  E-value=0.027  Score=44.59  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE-ecccCCChhHHHHHHHhcccCCCCeeecCCCCCHHHHHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL-AACDTFRAAAYEQLLILGKYNDVPVISEKKITDPAAIAFNAINIAQK  179 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l-~~~d~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~la~al~  179 (302)
                      ++.++|+..||||...-.+++    ..+++.+ .+...+...-.+.+..+.++.+-.+.....+.+....    + ....
T Consensus         1 iiLVtGGarSGKS~~AE~l~~----~~~~~~YiAT~~~~D~em~~RI~~Hr~rR~~~w~tiE~~~~l~~~----l-~~~~   71 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG----DAPQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL----I-TADL   71 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC----SCSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT----S-CTTS
T ss_pred             CEEEECCCCccHHHHHHHHHh----cCCCcEEEEccCCCCHHHHHHHHHHHhcCcCCCEEecccccHHHH----H-Hhhc
Confidence            468999999999999988763    3445554 4433333222334444444444445444333332211    1 1234


Q ss_pred             CCCCeEEEcCCC
Q psy2881         180 KNTDIVIVDTSG  191 (302)
Q Consensus       180 ~~~~llllDEP~  191 (302)
                      .+++.+|+|.-+
T Consensus        72 ~~~~~vLlDclt   83 (180)
T d1c9ka_          72 APDDAILLECIT   83 (180)
T ss_dssp             CTTCEEEEECHH
T ss_pred             Ccccchhhhhhh
Confidence            667899998764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.70  E-value=0.018  Score=48.44  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCHHHHHH-HHHhHhhh---CCCeEEEec
Q psy2881         101 VIMIVGVNGVGKTTTIG-KLANYFKK---RKKSVLLAA  134 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~-~Lag~~~~---~~g~V~l~~  134 (302)
                      -+.|+|+.||||||++. .++.++..   ...+|.+..
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            36789999999998764 44444432   224687764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.64  E-value=0.014  Score=46.67  Aligned_cols=35  Identities=11%  Similarity=-0.042  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      |.-+.+.+|+|||||+..-...-..-...+++.+.
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l   74 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYV   74 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHhhccCcceee
Confidence            44567999999999876422211112345666665

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.44  E-value=0.032  Score=47.36  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhh-hC
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFK-KR  126 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~-~~  126 (302)
                      ++ ++++|.-.|||||+++.|.|.-- |.
T Consensus        25 P~-ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          25 PQ-IVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             CE-EEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             Ce-EEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            44 67999999999999999999643 44

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.22  E-value=0.042  Score=43.88  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhC
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKR  126 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~  126 (302)
                      .++++|.-.+|||||+..|.+.+...
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~~~~   30 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKILAEG   30 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHHHHc
Confidence            38999999999999999998766543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.18  E-value=0.021  Score=49.02  Aligned_cols=22  Identities=32%  Similarity=0.277  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      +||||..-||||||++.|++.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999998863

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.035  Score=48.72  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHh-Hhh---hCCCeEEEe
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLAN-YFK---KRKKSVLLA  133 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag-~~~---~~~g~V~l~  133 (302)
                      +.++.|.||.|+||||++..+.. +..   ..+.+|.+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~  201 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA  201 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEe
Confidence            46899999999999999876544 333   223456654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.91  E-value=0.025  Score=48.10  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhH
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      --+||||...||||||++.|++-
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            35999999999999999999975

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.84  E-value=0.029  Score=44.44  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++++|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999998743

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.62  E-value=0.04  Score=44.03  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      .++++|.-.+|||||+..|.+..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            59999999999999999998744

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.19  E-value=0.046  Score=46.25  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHH-HHHhHhhh---CCCeEEEec
Q psy2881         101 VIMIVGVNGVGKTTTIG-KLANYFKK---RKKSVLLAA  134 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~-~Lag~~~~---~~g~V~l~~  134 (302)
                      .+.|.|+.||||||++. .++.++..   ...+|.+..
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt   63 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT   63 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEe
Confidence            36788999999998764 44444432   124677764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.12  E-value=0.039  Score=46.42  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -+||||-.-|||||+++.|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.47  E-value=0.059  Score=43.01  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.-+.|.||+|+||||++..++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999999775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.27  E-value=0.15  Score=37.36  Aligned_cols=40  Identities=13%  Similarity=0.061  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh-C-CCeEEEeccc
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK-R-KKSVLLAACD  136 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~-~-~g~V~l~~~d  136 (302)
                      ++|-.+.+.|-+||||+|+.+.|...+-. . +.+|.+.+.|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            46888889999999999999888665544 4 4578876554

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.071  Score=42.07  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      -+|+|.|-|  ||||+-.+|+.++...+-.+.+.+.
T Consensus        12 ~vI~VTGT~--GKTTt~~~l~~iL~~~g~~~~~~~~   45 (204)
T d2jfga3          12 PIVAITGSN--GKSTVTTLVGEMAKAAGVNVGVGGN   45 (204)
T ss_dssp             CEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred             CEEEEECCC--CHHHHHHHHHHHHHhcCCCcccCCc
Confidence            466666665  7999999999999887766766553

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.11  Score=40.82  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      |+++++|.|-|  ||||+..+|+.++...+-.+...+.
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~g~~~~~~g~   36 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQCGNTLYTAGN   36 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhCCCCEEEeCc
Confidence            46777777777  6999999999999877666666554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.91  E-value=0.083  Score=42.79  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy2881         101 VIMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag  121 (302)
                      .++++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            389999999999999998854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.83  E-value=0.053  Score=46.91  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .|+|=|+=||||||+++.|+..+..  ..|.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~--~~v~~~~   37 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR--DDIVYVP   37 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC------CCEEEEC
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC--CCeEEec
Confidence            4778899999999999999987643  2355543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=90.56  E-value=3.4  Score=33.10  Aligned_cols=38  Identities=21%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +.+....|.|..|||||=..-..+...-..+++|.+.-
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~  111 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV  111 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEc
Confidence            34567889999999999776665555556778888764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.32  E-value=0.1  Score=41.76  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV  130 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V  130 (302)
                      ++-..+.|.||.++|||+++..|+.++   +|.|
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l---~G~v   81 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFI---QGAV   81 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHH---TCEE
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHh---CCEE
Confidence            455689999999999999999999887   3554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.22  E-value=0.062  Score=45.51  Aligned_cols=29  Identities=17%  Similarity=0.051  Sum_probs=24.9

Q ss_pred             eecCCCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          94 FKKCKPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        94 l~~~~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      +.+.+|+.++|+|+.|+||||++..++.-
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            46789999999999999999998766654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.16  E-value=0.07  Score=45.78  Aligned_cols=20  Identities=35%  Similarity=0.421  Sum_probs=17.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTI  116 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll  116 (302)
                      ..|++..+.|.+|+|||||-
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            35889999999999999973

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.073  Score=45.51  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=24.5

Q ss_pred             HHhhhHhCCceEEEecCCC-C-CcCccCChHHHHHHhcc
Q psy2881         264 AAIAKKYSIPLYFIGIGEK-I-EDLQIFNAVDFVNALLN  300 (302)
Q Consensus       264 ~~~~~~~~~pv~~~~~gq~-v-~dl~~~~~~~~~~~l~~  300 (302)
                      .....+++..+.-+-+|.. + ..+..-..+.+++.++.
T Consensus       199 ~~ki~~~~~~v~LvNTGw~G~G~Ri~l~~TR~ii~ai~~  237 (313)
T d2olra1         199 VKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILN  237 (313)
T ss_dssp             HHHHHHHTCEEEEEECSBCTTSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEeccccCCCCcCCHHHHHHHHHHHHh
Confidence            3445567888888888864 3 55666666777776663

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.98  E-value=0.11  Score=43.50  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYF  123 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~  123 (302)
                      ++-..+.|.||.++||||++..|+.++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345688999999999999999999987

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.62  E-value=0.84  Score=34.64  Aligned_cols=36  Identities=31%  Similarity=0.313  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      +|-+....| ||=||||-.--+|-...-.+.+|.+..
T Consensus         2 kG~i~vytG-~GKGKTTAAlG~alRA~G~G~rV~ivQ   37 (157)
T d1g5ta_           2 RGIIIVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQ   37 (157)
T ss_dssp             CCCEEEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEeC-CCCCcHHHHHHHHHHHhcCCCEEEEEE
Confidence            577777888 899999998777766556788898864

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.31  E-value=0.28  Score=36.63  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881          99 PFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      |.+..++||=.|||||-|-..+..+...+.+|.+...
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp   38 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP   38 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence            6788899999999999666666666766777877643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.96  E-value=0.098  Score=44.88  Aligned_cols=20  Identities=35%  Similarity=0.429  Sum_probs=17.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTI  116 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll  116 (302)
                      +.|++..+.|.+|+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46889999999999999995

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=87.85  E-value=0.18  Score=47.75  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.+.|.+-|.+|||||+..+.|..++.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4568999999999999999999988875

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.83  E-value=0.14  Score=40.68  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEE
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLL  132 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l  132 (302)
                      .+|+|.|-|  ||||+-.+|+.++...+-++..
T Consensus        13 ~~I~ITGTn--GKTTt~~~l~~iL~~~~~~~~~   43 (215)
T d1p3da3          13 HGIAVAGTH--GKTTTTAMISMIYTQAKLDPTF   43 (215)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEECCC--CHHHHHHHHHHHHHhCCCCceE
Confidence            467777665  7999999999999866544443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.82  E-value=0.19  Score=41.84  Aligned_cols=25  Identities=36%  Similarity=0.646  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhH
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      .+-.++++|-.-|||||+++.|.+.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CceEEEEEecCccchhhhhhhhhcc
Confidence            4556999999999999999999873

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.53  E-value=0.2  Score=47.75  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      +..+.+.+-|.+|||||+..+.|..++.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4568999999999999999999998875

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.51  E-value=0.2  Score=47.73  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      .+.+.+.+-|.+|||||+..+.+..++.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999998876

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=87.49  E-value=0.32  Score=38.65  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEec
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAA  134 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~  134 (302)
                      .+|+|.|-|  ||||+-.+|+.++...+-++.+.|
T Consensus         6 ~vI~ITGT~--GKTTt~~~l~~iL~~~g~~~~~~g   38 (234)
T d1e8ca3           6 RLVGVTGTN--GKTTTTQLLAQWSQLLGEISAVMG   38 (234)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCC--cHHHHHHHHHHHHHHCCCCeEEEC
Confidence            477777777  899999999999998776776654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.39  E-value=0.097  Score=45.63  Aligned_cols=45  Identities=2%  Similarity=0.173  Sum_probs=33.0

Q ss_pred             HhCCCCeEEEcCCC---CccchHHHHHHHHHHHHHhchhhccccceeeh
Q psy2881         178 QKKNTDIVIVDTSG---RLSTQSHLMRELKKIKKVIEKKIFELPYEIFL  223 (302)
Q Consensus       178 l~~~~~llllDEP~---d~~~~~~l~~~L~~l~~~~~~~i~~~~hd~~l  223 (302)
                      ...+++++++|||.   |+.+...+.+.|.++.. .+.-++++||+..+
T Consensus       351 ~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~~~  398 (427)
T d1w1wa_         351 SYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM  398 (427)
T ss_dssp             TSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCHHH
Confidence            34677899999996   88888888888877642 23347789997654

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.74  E-value=4.9  Score=30.96  Aligned_cols=18  Identities=33%  Similarity=0.372  Sum_probs=14.0

Q ss_pred             CeEEEEEcCCCCCHHHHH
Q psy2881          99 PFVIMIVGVNGVGKTTTI  116 (302)
Q Consensus        99 g~ii~lvGpnGsGKTTll  116 (302)
                      |+=+.+.+|+|+|||...
T Consensus        38 g~dvi~~a~tGsGKTlay   55 (206)
T d1s2ma1          38 GRDILARAKNGTGKTAAF   55 (206)
T ss_dssp             TCCEEEECCTTSCHHHHH
T ss_pred             CCCEEEecCCcchhhhhh
Confidence            444789999999999543

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=86.63  E-value=1.7  Score=35.80  Aligned_cols=68  Identities=16%  Similarity=0.023  Sum_probs=40.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecccCCCh-hHHHHHHHhcccCCCCeeecCCCCCH
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRA-AAYEQLLILGKYNDVPVISEKKITDP  166 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~d~~~~-~~~~ql~~~~~~~~~~~~~~~~~~~~  166 (302)
                      ..|.+.=  =.+|=|||.+....+.+....+..|.+.....+-. ...+.+..+.+.+|+.+-......++
T Consensus        93 ~~G~iae--m~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~~~~  161 (273)
T d1tf5a3          93 HDGNIAE--MKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSK  161 (273)
T ss_dssp             HTTSEEE--CCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCH
T ss_pred             Hhhhhee--ecCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCCCccccccccCH
Confidence            4564322  26899999777777766667787899887654411 11234555566677766443333333

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.59  E-value=0.23  Score=47.82  Aligned_cols=28  Identities=32%  Similarity=0.566  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ...+.+.+-|.+|||||+..+.|..++.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4568899999999999999999998885

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.83  E-value=0.24  Score=40.49  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhH
Q psy2881         101 VIMIVGVNGVGKTTTIGKLANY  122 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~Lag~  122 (302)
                      -++++|.-++|||||+..|+..
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5889999999999999988654

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.98  E-value=0.31  Score=46.50  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKK  125 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~  125 (302)
                      ..++.+.|-|.+|||||+..+.+..++..
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~~  120 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFAT  120 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999988764

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=84.07  E-value=0.35  Score=40.59  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEecc
Q psy2881         100 FVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAAC  135 (302)
Q Consensus       100 ~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~~~  135 (302)
                      .+|+|.|-|  ||||+...|..++...+-+|.+.+.
T Consensus        40 kvI~VTGTN--GKtST~~~i~~IL~~~G~kvG~~tS   73 (296)
T d2gc6a2          40 RYIHVTGTN--GKGSAANAIAHVLEASGLTVGLYTA   73 (296)
T ss_dssp             CEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEEeccC--cHHHHHHHHHHHHHhcCCceeeeec
Confidence            478888877  6999999999999988877776543

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.64  E-value=0.33  Score=46.72  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhh
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFK  124 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~  124 (302)
                      ...+.+.|-|.+|||||...+.|..++.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4568899999999999999999988876

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.76  E-value=0.27  Score=40.25  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy2881         102 IMIVGVNGVGKTTTIGKLAN  121 (302)
Q Consensus       102 i~lvGpnGsGKTTll~~Lag  121 (302)
                      ++++|.-++|||||+..|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHH
Confidence            89999999999999998854

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.29  E-value=7.7  Score=29.85  Aligned_cols=19  Identities=26%  Similarity=0.303  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy2881         101 VIMIVGVNGVGKTTTIGKL  119 (302)
Q Consensus       101 ii~lvGpnGsGKTTll~~L  119 (302)
                      -+.+..|+|+|||...-..
T Consensus        44 d~iv~a~TGsGKT~~~~l~   62 (208)
T d1hv8a1          44 NIVAQARTGSGKTASFAIP   62 (208)
T ss_dssp             EEEEECCSSSSHHHHHHHH
T ss_pred             Ceeeechhcccccceeecc
Confidence            4567899999999865433

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.13  E-value=0.74  Score=35.92  Aligned_cols=31  Identities=35%  Similarity=0.420  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeE
Q psy2881          98 KPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSV  130 (302)
Q Consensus        98 ~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V  130 (302)
                      ++++++|.|-|  ||||+..+|+.++...+.++
T Consensus        13 ~~~~iAITGTn--GKTTt~~~l~~iL~~~g~~~   43 (207)
T d1j6ua3          13 KKEEFAVTGTD--GKTTTTAMVAHVLKHLRKSP   43 (207)
T ss_dssp             CCCEEEEECSS--SHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCC--CHHHHHHHHHHHHHhCCCCC
Confidence            46789999887  69999999999998766553

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.77  E-value=2.6  Score=34.61  Aligned_cols=37  Identities=19%  Similarity=0.073  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHhHhhhCCCeEEEe
Q psy2881          97 CKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLA  133 (302)
Q Consensus        97 ~~g~ii~lvGpnGsGKTTll~~Lag~~~~~~g~V~l~  133 (302)
                      ..+....|.|..|||||=..-..+...-..+.++.+.
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m  138 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM  138 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             cCcceeeeeccccccccHHHHHHHHHHHhcccceeEE
Confidence            3445678999999999976655554444667777776