Psyllid ID: psy2914


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MKSQSVMHSPRNSPFLSKVNSKDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKPSESTGDANGKVPTSQQS
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccc
mksqsvmhsprnspflskvnskdedvhgSAMSLASVSssiystpeerQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALksprlqeaanssskltapkpsestgdangkvptsqqs
mksqsvmhsprnspflskvnSKDEDVHGSAMSLasvsssiystpeeRQSYELRKLRRELVDAQEKVQTlssqlntnSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALksprlqeaanssskltapkpsestgdangkvptsqqs
MKSQSVMHSPRNSPFLSKVNSKDEDVHGsamslasvsssiysTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKPSESTGDANGKVPTSQQS
*******************************************************************************************************************IVQI***************************************
*****************************************************************VQTLSSQLNTNSHVVSAFEQSLSNMTQRL*************SFSKAFS********************************************
*************PFLSKV*****************************SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSP**********************************
***********************************VS*SIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKS*R*********************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSQSVMHSPRNSPFLSKVNSKDEDVHGSAMSLASVSSSIYSTPxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKPSESTGDANGKVPTSQQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query158 2.2.26 [Sep-21-2011]
Q9VIQ9 2197 Protein sickie OS=Drosoph yes N/A 0.525 0.037 0.638 1e-24
Q80TN7 2359 Neuron navigator 3 OS=Mus no N/A 0.512 0.034 0.621 3e-16
Q8IVL1 2488 Neuron navigator 2 OS=Hom yes N/A 0.512 0.032 0.629 3e-16
Q8IVL0 2385 Neuron navigator 3 OS=Hom no N/A 0.512 0.033 0.621 3e-16
Q8NEY1 1877 Neuron navigator 1 OS=Hom no N/A 0.512 0.043 0.634 7e-15
Q8CH77 1875 Neuron navigator 1 OS=Mus no N/A 0.512 0.043 0.634 7e-15
Q5TZ18 2269 Neuron navigator 3 OS=Dan no N/A 0.341 0.023 0.648 1e-13
>sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster GN=sick PE=1 SV=3 Back     alignment and function desciption
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 70/83 (84%)

Query: 22   KDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVS 81
            K+++VHGSA SL S  SS+Y   EERQ++E+R+L+REL DA+++V +LSSQL+TN+HVV+
Sbjct: 1243 KNDEVHGSAASLLSGGSSLYGNAEERQAHEIRRLKRELQDARDQVLSLSSQLSTNAHVVT 1302

Query: 82   AFEQSLSNMTQRLQQLTVSAEEK 104
            AFEQSLSNMT RL QLT +AE K
Sbjct: 1303 AFEQSLSNMTNRLHQLTATAERK 1325




Required for the immune deficiency pathway, which mediates responses to Gram-negative bacterial infection. Favors Rel activation and nuclear translocation.
Drosophila melanogaster (taxid: 7227)
>sp|Q80TN7|NAV3_MOUSE Neuron navigator 3 OS=Mus musculus GN=Nav3 PE=1 SV=2 Back     alignment and function description
>sp|Q8IVL1|NAV2_HUMAN Neuron navigator 2 OS=Homo sapiens GN=NAV2 PE=1 SV=3 Back     alignment and function description
>sp|Q8IVL0|NAV3_HUMAN Neuron navigator 3 OS=Homo sapiens GN=NAV3 PE=1 SV=3 Back     alignment and function description
>sp|Q8NEY1|NAV1_HUMAN Neuron navigator 1 OS=Homo sapiens GN=NAV1 PE=1 SV=2 Back     alignment and function description
>sp|Q8CH77|NAV1_MOUSE Neuron navigator 1 OS=Mus musculus GN=Nav1 PE=1 SV=2 Back     alignment and function description
>sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio GN=nav3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
350411897 2325 PREDICTED: LOW QUALITY PROTEIN: protein 0.613 0.041 0.680 3e-30
340711639 2339 PREDICTED: LOW QUALITY PROTEIN: protein 0.613 0.041 0.680 3e-30
242019973 1242 conserved hypothetical protein [Pediculu 0.563 0.071 0.651 5e-27
189241497 1801 PREDICTED: similar to neuron navigator 2 0.525 0.046 0.710 1e-26
328700095 1776 PREDICTED: hypothetical protein LOC10016 0.639 0.056 0.615 3e-26
328700097 1785 PREDICTED: hypothetical protein LOC10016 0.639 0.056 0.615 3e-26
161076970 2018 sickie, isoform D [Drosophila melanogast 0.525 0.041 0.638 6e-23
195580284 2107 GD24235 [Drosophila simulans] gi|1941919 0.525 0.039 0.638 7e-23
442628501 1993 sickie, isoform M [Drosophila melanogast 0.525 0.041 0.638 8e-23
442628484 2192 sickie, isoform H [Drosophila melanogast 0.525 0.037 0.638 8e-23
>gi|350411897|ref|XP_003489484.1| PREDICTED: LOW QUALITY PROTEIN: protein sickie-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 84/97 (86%)

Query: 8    HSPRNSPFLSKVNSKDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQ 67
            H+ R  P L +   KD+D+HGS++SL S +SS+YS+ EE+Q++ELRKLRRELVDAQEKV 
Sbjct: 1417 HTSRQPPNLYQHVHKDDDIHGSSVSLVSTASSLYSSAEEKQAHELRKLRRELVDAQEKVH 1476

Query: 68   TLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104
            +L+SQL+TN+HVVSAFEQSLSNMTQRLQQLT +AE+K
Sbjct: 1477 SLTSQLSTNAHVVSAFEQSLSNMTQRLQQLTATAEKK 1513




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711639|ref|XP_003394380.1| PREDICTED: LOW QUALITY PROTEIN: protein sickie-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|242019973|ref|XP_002430432.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515570|gb|EEB17694.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|189241497|ref|XP_967205.2| PREDICTED: similar to neuron navigator 2 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328700095|ref|XP_001949140.2| PREDICTED: hypothetical protein LOC100169531 isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328700097|ref|XP_003241148.1| PREDICTED: hypothetical protein LOC100169531 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|161076970|ref|NP_001097183.1| sickie, isoform D [Drosophila melanogaster] gi|442628488|ref|NP_001260605.1| sickie, isoform F [Drosophila melanogaster] gi|157400188|gb|AAF53856.3| sickie, isoform D [Drosophila melanogaster] gi|440213965|gb|AGB93140.1| sickie, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195580284|ref|XP_002079980.1| GD24235 [Drosophila simulans] gi|194191989|gb|EDX05565.1| GD24235 [Drosophila simulans] Back     alignment and taxonomy information
>gi|442628501|ref|NP_001260610.1| sickie, isoform M [Drosophila melanogaster] gi|440213970|gb|AGB93145.1| sickie, isoform M [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442628484|ref|NP_001260603.1| sickie, isoform H [Drosophila melanogaster] gi|440213963|gb|AGB93138.1| sickie, isoform H [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
UNIPROTKB|H0YI14 799 NAV3 "Neuron navigator 3" [Hom 0.632 0.125 0.455 3.8e-18
UNIPROTKB|J9NVW6 1877 NAV1 "Uncharacterized protein" 0.512 0.043 0.524 4e-18
UNIPROTKB|F1MHF3 2371 NAV2 "Uncharacterized protein" 0.784 0.052 0.410 8.6e-18
UNIPROTKB|D4A5I41221 LOC685707 "Protein LOC685707" 0.512 0.066 0.524 9.2e-18
FB|FBgn0263873 2197 sick "sickie" [Drosophila mela 0.848 0.060 0.387 1.4e-17
UNIPROTKB|H0YHA8 1258 NAV3 "Neuron navigator 3" [Hom 0.632 0.079 0.455 3.5e-17
UNIPROTKB|F1LR12 2342 Nav2 "Protein Nav2" [Rattus no 0.784 0.052 0.410 3.5e-17
UNIPROTKB|F1P9L3 2454 NAV2 "Uncharacterized protein" 0.784 0.050 0.410 3.9e-17
UNIPROTKB|F1PNX9 2347 NAV3 "Uncharacterized protein" 0.632 0.042 0.455 5.8e-17
UNIPROTKB|Q8NEY1 1877 NAV1 "Neuron navigator 1" [Hom 0.512 0.043 0.524 8.5e-17
UNIPROTKB|H0YI14 NAV3 "Neuron navigator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 208 (78.3 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
 Identities = 46/101 (45%), Positives = 61/101 (60%)

Query:     5 SVMHSPRNSPFLSKVNSKDEDVHGXXXXXXXXXXXXXXTPEER-QSYELRKLRRELVDAQ 63
             S+   PR            E+VHG              T EE+  S ++ KLRRELV +Q
Sbjct:   152 SLEERPRAISHSGSFRDSMEEVHGSSLSLVSSTSSLYSTAEEKAHSEQIHKLRRELVASQ 211

Query:    64 EKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104
             EKV TL+SQL+ N+H+V+AFE+SL NMT RLQ LT++AE+K
Sbjct:   212 EKVATLTSQLSANAHLVAAFEKSLGNMTGRLQSLTMTAEQK 252


GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|J9NVW6 NAV1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHF3 NAV2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4A5I4 LOC685707 "Protein LOC685707" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0263873 sick "sickie" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H0YHA8 NAV3 "Neuron navigator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LR12 Nav2 "Protein Nav2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9L3 NAV2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PNX9 NAV3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NEY1 NAV1 "Neuron navigator 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8IVL1NAV2_HUMAN3, ., 6, ., 4, ., 1, 20.62960.51260.0325yesN/A
Q9VIQ9SICK_DROMENo assigned EC number0.63850.52530.0377yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 53/172 (30%)

Query: 7   MHSPRNSPF------LSKVNSKDED---VHGSAM------SLA-SVSSSIYSTPEERQSY 50
            +  R  P+      L ++  +      + G  +       +A  V  S     + +  +
Sbjct: 129 YNVSRLQPYLKLRQALLEL--RPAKNVLIDG--VLGSGKTWVALDVCLS--YKVQCKMDF 182

Query: 51  E-----LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKL 105
           +     L+          E +Q L  Q++ N         S S+ +  ++    S + +L
Sbjct: 183 KIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWT-------SRSDHSSNIKLRIHSIQAEL 234

Query: 106 RSSFSKAFSRIVQIAL------KSPRLQEAANSSSK--LTAPKPSESTGDAN 149
           R       S+  +  L      ++ +   A N S K  LT       T    
Sbjct: 235 RRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-------TRFKQ 276


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
3trt_A77 Vimentin; cytoskeleton, intermediate filament, alp 87.76
2lf0_A123 Uncharacterized protein YIBL; two-domain protein, 81.39
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A* Back     alignment and structure
Probab=87.76  E-value=0.76  Score=30.65  Aligned_cols=48  Identities=23%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHHHHHHHHH-hhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhh
Q psy2914          52 LRKLRRELVD-AQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTV   99 (158)
Q Consensus        52 IRkLrRELe~-aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~   99 (158)
                      ++|-|+|++. ++.|+..|+.+...|..-+.+-...+..+...+|.|..
T Consensus        22 a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~   70 (77)
T 3trt_A           22 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTM   70 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999987 89999999999999999999988899999999998864



>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00