Psyllid ID: psy2937

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRNKTTQNGTIKNAS
ccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHcccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccHHHHHHHHccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
MYRMAVMTFLLdennetklnrTRCMELALLHDMAecivgdltpycgvskeeKHRREDLIKRCMELALLHDMAecivgdltpycgvskeekhRREDEAMKTLKSLCHTQGDRMYTLFQEyesqetpeakfvkELDIVDMLVQAFEYEkaqhidlseffvperytfvfpltksmneeleyesqetpeakfvkELDIVDMLVQAFEYEkaqhidlseffvperytfvfpltKSMNEELVKQRNELIRNkttqngtiknas
MYRMAVMTFlldennetklNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYEsqetpeakfVKELDIVDMLVQAFEYEKAQhidlseffvpERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQhidlseffvpERYTFVFPLTKSMNEELVKQRNelirnkttqngtiknas
MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRNKTTQNGTIKNAS
****AVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGV*****************SLCHTQGDRMYTLFQEYES**TPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTK***************AKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKS***************************
*YRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRN*****************
MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSK*********AMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNE*********PEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRNKTTQ********
MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNEL***************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVKQRNELIRNKTTQNGTIKNAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
Q1LUI2200 HD domain-containing prot yes N/A 0.443 0.57 0.520 1e-24
P87242198 HD domain-containing prot yes N/A 0.373 0.484 0.504 6e-20
Q66L17201 HD domain-containing prot N/A N/A 0.412 0.527 0.431 1e-19
Q54FK1190 HD domain-containing prot yes N/A 0.455 0.615 0.398 2e-16
P38331238 HD domain-containing prot yes N/A 0.431 0.466 0.319 5e-14
P53144215 HD domain-containing prot no N/A 0.377 0.451 0.423 2e-12
Q0P565205 HD domain-containing prot yes N/A 0.501 0.629 0.463 7e-11
Q7Z4H3204 HD domain-containing prot yes N/A 0.463 0.583 0.475 9e-11
Q3SXD3199 HD domain-containing prot yes N/A 0.463 0.597 0.467 6e-10
>sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1 Back     alignment and function desciption
 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 82/123 (66%), Gaps = 9/123 (7%)

Query: 61  RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDR--MYTLFQE 118
           RCM+LAL+HD+AECIVGD+ P   VSK EKHRRE +AM  +  L    G R  +Y L++E
Sbjct: 56  RCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLL-DDGLRKEIYNLWEE 114

Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYE--KAQHIDLSEFFVPERYTF----VFPLTKSM 172
           YE+Q +PEAK VKELD ++M++QA EYE  + +   L EFFV     F    V  L KS+
Sbjct: 115 YETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFHHPEVLGLLKSL 174

Query: 173 NEE 175
           NEE
Sbjct: 175 NEE 177

Danio rerio (taxid: 7955)
>sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=3 SV=1 Back     alignment and function description
>sp|Q66L17|HDDC2_XENLA HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1 Back     alignment and function description
>sp|Q54FK1|HDDC2_DICDI HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1 Back     alignment and function description
>sp|P38331|YB92_YEAST HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR242W PE=1 SV=1 Back     alignment and function description
>sp|P53144|YGK1_YEAST HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL101W PE=1 SV=1 Back     alignment and function description
>sp|Q0P565|HDDC2_BOVIN HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z4H3|HDDC2_HUMAN HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1 Back     alignment and function description
>sp|Q3SXD3|HDDC2_MOUSE HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
357605042198 hypothetical protein KGM_08329 [Danaus p 0.560 0.727 0.454 2e-34
389612789200 similar to CG11050 [Papilio xuthus] 0.536 0.69 0.463 5e-33
242018865194 conserved hypothetical protein [Pediculu 0.529 0.701 0.415 5e-28
322791247203 hypothetical protein SINV_15207 [Solenop 0.447 0.566 0.495 1e-26
390364731217 PREDICTED: HD domain-containing protein 0.451 0.534 0.537 7e-26
291233041194 PREDICTED: predicted protein-like [Sacco 0.447 0.592 0.533 1e-25
307196684191 HD domain-containing protein 2 [Harpegna 0.548 0.738 0.366 3e-25
170584524194 HD domain containing protein [Brugia mal 0.525 0.695 0.401 5e-25
332028116302 HD domain-containing protein 2 [Acromyrm 0.381 0.324 0.54 5e-25
312089262193 HD domain-containing protein [Loa loa] g 0.451 0.601 0.504 7e-25
>gi|357605042|gb|EHJ64445.1| hypothetical protein KGM_08329 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 110/185 (59%), Gaps = 41/185 (22%)

Query: 1   MYRMAVMTFLLDE-NNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLI 59
           MYRM +MTFLL E NN TKL+R +C++                                 
Sbjct: 43  MYRMGLMTFLLTEKNNPTKLDRFKCLQ--------------------------------- 69

Query: 60  KRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEY 119
                +AL+HD+AECIVGDLTP+CGV+ EEKHRREDEAMKT+  L    GDRMY +++EY
Sbjct: 70  -----IALIHDLAECIVGDLTPHCGVTPEEKHRREDEAMKTIAELTGLAGDRMYEIYKEY 124

Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQH--IDLSEFFVPERYTFVFPLTKSMNEELE 177
           E+Q +PEAKF K+LD  DM++QAFEYEK ++    L EFF     TF  P  + + +EL 
Sbjct: 125 ENQSSPEAKFAKDLDRYDMILQAFEYEKRENKPKKLEEFFQSTYGTFNHPFIQGLAKELY 184

Query: 178 YESQE 182
            + +E
Sbjct: 185 KQREE 189

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|389612789|dbj|BAM19804.1| similar to CG11050 [Papilio xuthus] Back     alignment and taxonomy information
>gi|242018865|ref|XP_002429891.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514925|gb|EEB17153.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322791247|gb|EFZ15776.1| hypothetical protein SINV_15207 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|390364731|ref|XP_003730669.1| PREDICTED: HD domain-containing protein 2-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|291233041|ref|XP_002736462.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|307196684|gb|EFN78143.1| HD domain-containing protein 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|170584524|ref|XP_001897049.1| HD domain containing protein [Brugia malayi] gi|158595584|gb|EDP34127.1| HD domain containing protein [Brugia malayi] Back     alignment and taxonomy information
>gi|332028116|gb|EGI68167.1| HD domain-containing protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|312089262|ref|XP_003146178.1| HD domain-containing protein [Loa loa] gi|307758657|gb|EFO17891.1| HD domain-containing protein [Loa loa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
FB|FBgn0031836388 CG11050 [Drosophila melanogast 0.470 0.311 0.475 6.6e-26
UNIPROTKB|F1N9Z8199 HDDC2 "Uncharacterized protein 0.447 0.577 0.471 6.1e-23
ZFIN|ZDB-GENE-050522-394200 hddc2 "HD domain containing 2" 0.447 0.575 0.516 1.6e-24
POMBASE|SPCC4G3.17198 SPCC4G3.17 "HD domain metal de 0.470 0.611 0.453 1.9e-21
UNIPROTKB|F1PX39200 HDDC2 "Uncharacterized protein 0.501 0.645 0.470 1.1e-23
UNIPROTKB|Q0P565205 HDDC2 "HD domain-containing pr 0.501 0.629 0.463 1.1e-23
UNIPROTKB|Q7Z4H3204 HDDC2 "HD domain-containing pr 0.463 0.583 0.475 2.3e-23
MGI|MGI:1916942199 Hddc2 "HD domain containing 2" 0.486 0.628 0.453 6.1e-23
UNIPROTKB|F1S2V3205 HDDC2 "Uncharacterized protein 0.501 0.629 0.448 3.8e-23
RGD|1307562199 Hddc2 "HD domain containing 2" 0.486 0.628 0.446 1.3e-22
FB|FBgn0031836 CG11050 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 59/124 (47%), Positives = 84/124 (67%)

Query:    61 RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
             RCMELAL+HD+AE +VGD+TP+CG+SK++K   E +AM+ +  L   +G R+  LF+EYE
Sbjct:   233 RCMELALVHDLAESLVGDITPFCGISKDDKRAMEFKAMEDICKLIEPRGKRIMELFEEYE 292

Query:   121 SQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLS--EFFVPERYTFVFPLTKSMNEELEY 178
               +T E+KFVK+LD +DM++QAFEYEK  +  L   EFF      F  P  K +  E+ Y
Sbjct:   293 HGQTAESKFVKDLDRLDMVMQAFEYEKRDNCLLKHQEFFDSTEGKFNHPFVKKLVNEI-Y 351

Query:   179 ESQE 182
             E ++
Sbjct:   352 EQRD 355
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|F1N9Z8 HDDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-394 hddc2 "HD domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPCC4G3.17 SPCC4G3.17 "HD domain metal dependent phosphohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX39 HDDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P565 HDDC2 "HD domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z4H3 HDDC2 "HD domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1916942 Hddc2 "HD domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2V3 HDDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1307562 Hddc2 "HD domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1LUI2HDDC2_DANRENo assigned EC number0.52030.44350.57yesN/A
P87242YC0H_SCHPONo assigned EC number0.50480.37350.4848yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
pfam13023163 pfam13023, HD_3, HD domain 9e-28
COG1896193 COG1896, COG1896, Predicted hydrolases of HD super 2e-17
>gnl|CDD|221899 pfam13023, HD_3, HD domain Back     alignment and domain information 
 Score =  103 bits (260), Expect = 9e-28
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 41/161 (25%)

Query: 1   MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIK 60
            + +A+M  LL E     ++  R +++ L+HD+ E   GD+     + K+EK  RE    
Sbjct: 26  SWHVALMALLLAEYAGEGVDIARVIKMLLIHDLVEIDAGDIISPDKLDKKEKEERE---- 81

Query: 61  RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYE 120
                    + AE I G L              ED            QG+ +  L+ E+E
Sbjct: 82  --------REAAERIFGLL-------------PED------------QGEELRALWDEFE 108

Query: 121 SQETPEAKFVKELDIVDMLVQAFEYE----KAQHIDLSEFF 157
           + ETPEA+F K LD ++ ++Q  EYE     A  + LS+ +
Sbjct: 109 AGETPEARFAKALDRLEPILQNLEYEGDSWAAFEVTLSQVY 149

HD domains are metal dependent phosphohydrolases. Length = 163
>gnl|CDD|224808 COG1896, COG1896, Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
KOG3197|consensus210 100.0
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 99.93
PRK03826195 5'-nucleotidase; Provisional 99.9
COG1896193 Predicted hydrolases of HD superfamily [General fu 99.78
KOG3197|consensus210 99.45
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 99.38
PRK03826195 5'-nucleotidase; Provisional 99.34
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 99.13
COG1896193 Predicted hydrolases of HD superfamily [General fu 98.89
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 97.19
PRK10119231 putative hydrolase; Provisional 94.86
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 92.1
smart00471124 HDc Metal dependent phosphohydrolases with conserv 90.91
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 90.51
PRK12705508 hypothetical protein; Provisional 89.12
cd00077145 HDc Metal dependent phosphohydrolases with conserv 83.33
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 82.67
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 82.62
TIGR00295164 conserved hypothetical protein TIGR00295. This set 82.34
COG1418222 Predicted HD superfamily hydrolase [General functi 81.43
>KOG3197|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.1e-44  Score=302.92  Aligned_cols=146  Identities=48%  Similarity=0.749  Sum_probs=127.1

Q ss_pred             ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937           1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT   80 (257)
Q Consensus         1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~   80 (257)
                      ||||++|||++.+   ++||++||++||||||+||+++|||                                      |
T Consensus        60 MYRM~llaml~~d---~~vnr~rC~kiAlVHD~AEslVgdi--------------------------------------t   98 (210)
T KOG3197|consen   60 MYRMALLAMLIKD---PGVNRERCMKIALVHDIAESLVGDI--------------------------------------T   98 (210)
T ss_pred             HHHHHHHHHHhcC---CCcCHHHHHHHHHHHHHHHHHhCCC--------------------------------------C
Confidence            8999999999988   6999999999999999999999954                                      5


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCccccccc
Q psy2937          81 PYCGVSKEEKHRREDEAMKTLKSLCHT--QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFV  158 (257)
Q Consensus        81 ~~~~~~~~~k~~~E~~A~~~l~~~Lp~--~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~  158 (257)
                      |+|++++++|+++|-+|+..++.+|+.  .+.+|.+||.|                                        
T Consensus        99 P~~~vsKeeK~rre~eamk~ic~~l~~~~~akEi~elw~e----------------------------------------  138 (210)
T KOG3197|consen   99 PSDGVSKEEKHRREFEAMKYICQLLIGELRAKEITELWLE----------------------------------------  138 (210)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH----------------------------------------
Confidence            555566666666778889999998884  35566666655                                        


Q ss_pred             ccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhC--CCchhhhhhhcccccChHHHHHHHHHH
Q psy2937         159 PERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQH--IDLSEFFVPERYTFVFPLTKSMNEELV  236 (257)
Q Consensus       159 s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~--~~l~ef~~~~~~~~~t~~~k~~~~~l~  236 (257)
                                         ||.++|+||+||||+||+|||+||+|||+.+|  ++|++|| +|.|+|+||.+|.|+.+|+
T Consensus       139 -------------------YE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ng~~~lq~F~-st~g~~~~~~vk~w~~el~  198 (210)
T KOG3197|consen  139 -------------------YEEASSLEAKFVKDLDKFEMIVQAFEYEKKHNGEKDLQQFF-STVGKFKTPEVKKWVSELL  198 (210)
T ss_pred             -------------------HHhcCchhHHHHHhhHHHHHHHHHHHHHHHhcccchHHHHH-HhcccccChHHHHHHHHHH
Confidence                               56788999999999999999999999999886  6999999 7999999999999999999


Q ss_pred             HhHHHHHHhcc
Q psy2937         237 KQRNELIRNKT  247 (257)
Q Consensus       237 ~~r~~~~~~~~  247 (257)
                      .+|..+|++..
T Consensus       199 ~~R~~~~~~~~  209 (210)
T KOG3197|consen  199 EERQKFIAAAE  209 (210)
T ss_pred             HHHHHHHHhhc
Confidence            99999998753

>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>KOG3197|consensus Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
4dmb_A204 X-Ray Structure Of Human Hepatitus C Virus Ns5a-Tra 1e-09
1xx7_A184 Conserved Hypothetical Protein From Pyrococcus Furi 9e-09
2cqz_A177 Crystal Structure Of Ph0347 Protein From Pyrococcus 5e-08
3kh1_A200 Crystal Structure Of Predicted Metal-Dependent Phos 4e-06
>pdb|4DMB|A Chain A, X-Ray Structure Of Human Hepatitus C Virus Ns5a-Transactivated Protein 2 At The Resolution 1.9a, Northeast Structural Genomics Consortium (Nesg) Target Hr6723 Length = 204 Back     alignment and structure 
Iteration: 1

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 61  RCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDR-MYTLFQEY 119
           RC+ LAL+HD AECIVGD+ P   + KEEKHRRE+EA K +  L      + +Y L++EY
Sbjct: 69  RCVRLALVHDXAECIVGDIAPADNIPKEEKHRREEEAXKQITQLLPEDLRKELYELWEEY 128
Query: 120 ESQETPEAKFVKELDIVDMLVQAFEYEKAQHID--LSEFFVPERYTFVFPLTKSMNEELE 177
           E+Q + EAKFVK+LD  + ++QA EYE  +H    L +F+      F  P    +  ELE
Sbjct: 129 ETQSSAEAKFVKQLDQCEXILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELE 188
Query: 178 YE 179
            E
Sbjct: 189 AE 190
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus Pfu- 403030-001 Length = 184 Back     alignment and structure
>pdb|2CQZ|A Chain A, Crystal Structure Of Ph0347 Protein From Pyrococcus Horikoshii Ot3 Length = 177 Back     alignment and structure
>pdb|3KH1|A Chain A, Crystal Structure Of Predicted Metal-Dependent Phosphohydrolase (Zp_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 At 1.37 A Resolution Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
4dmb_A204 HD domain-containing protein 2; structural genomic 2e-24
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 2e-20
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 3e-05
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 2e-19
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 1e-09
2cqz_A177 177AA long hypothetical protein; hypothetical prot 8e-19
2cqz_A177 177AA long hypothetical protein; hypothetical prot 5e-09
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 2e-16
1ynb_A173 Hypothetical protein AF1432; structural genomics, 4e-13
1ynb_A173 Hypothetical protein AF1432; structural genomics, 3e-07
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Length = 204 Back     alignment and structure
 Score = 95.6 bits (237), Expect = 2e-24
 Identities = 58/127 (45%), Positives = 77/127 (60%), Gaps = 3/127 (2%)

Query: 59  IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLC-HTQGDRMYTLFQ 117
             RC+ LAL+HDMAECIVGD+ P   + KEEKHRRE+EAMK +  L        +Y L++
Sbjct: 67  KDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWE 126

Query: 118 EYESQETPEAKFVKELDIVDMLVQAFEYEKAQH--IDLSEFFVPERYTFVFPLTKSMNEE 175
           EYE+Q + EAKFVK+LD  +M++QA EYE  +H    L +F+      F  P    +  E
Sbjct: 127 EYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSE 186

Query: 176 LEYESQE 182
           LE E   
Sbjct: 187 LEAERST 193
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Length = 200 Back     alignment and structure
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Length = 200 Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Length = 184 Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Length = 184 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 177 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 177 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Length = 201 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Length = 173 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Length = 173 Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Length = 216 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
4dmb_A204 HD domain-containing protein 2; structural genomic 100.0
1ynb_A173 Hypothetical protein AF1432; structural genomics, 99.96
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 99.95
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 99.95
2cqz_A177 177AA long hypothetical protein; hypothetical prot 99.92
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 99.89
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 99.87
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 99.47
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 99.37
3kh1_A200 Predicted metal-dependent phosphohydrolase; struct 99.28
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 99.27
4dmb_A204 HD domain-containing protein 2; structural genomic 98.91
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 98.21
2cqz_A177 177AA long hypothetical protein; hypothetical prot 97.99
1ynb_A173 Hypothetical protein AF1432; structural genomics, 97.81
2gz4_A207 Hypothetical protein ATU1052; structural genomics, 97.61
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 96.85
3dto_A223 BH2835 protein; all alpha-helical protein, structu 96.44
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 95.6
2qgs_A225 Protein Se1688; alpha-helical protein, structural 94.23
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 93.14
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 92.98
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 89.52
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 85.55
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 85.01
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 84.43
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.7e-37  Score=271.03  Aligned_cols=147  Identities=46%  Similarity=0.769  Sum_probs=130.1

Q ss_pred             ChHHHHHHHHcccccCCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy2937           1 MYRMAVMTFLLDENNETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVGDLT   80 (257)
Q Consensus         1 ~~~~a~~~~~l~~~~~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vgDi~   80 (257)
                      |||||+||++|++.   ++|++||++|||+||++|+++|||                                      +
T Consensus        50 S~~vAliA~~l~~~---~vD~~r~~~maL~HDl~E~~tGDi--------------------------------------t   88 (204)
T 4dmb_A           50 MYRMAVMAMVIKDD---RLNKDRCVRLALVHDMAECIVGDI--------------------------------------A   88 (204)
T ss_dssp             HHHHHHHHHHSCCT---TSCHHHHHHHHHHTTTTHHHHCCC--------------------------------------C
T ss_pred             HHHHHHHHHHHccc---cCCHHHHHHHHHhcchHHhhcCCC--------------------------------------c
Confidence            79999999999973   699999999999999999999955                                      4


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccccc
Q psy2937          81 PYCGVSKEEKHRREDEAMKTLKSLCHT-QGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVP  159 (257)
Q Consensus        81 ~~~~~~~~~k~~~E~~A~~~l~~~Lp~-~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff~s  159 (257)
                      |++.++++.|+.+|..|+++++++||. .+++|.+||.||                                        
T Consensus        89 p~k~~~~~~k~~~E~~A~~~l~~~LP~~~~~e~~~Lw~Ey----------------------------------------  128 (204)
T 4dmb_A           89 PADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEY----------------------------------------  128 (204)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----------------------------------------
T ss_pred             cccccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------------------------------------
Confidence            566677888889999999999999996 466777777775                                        


Q ss_pred             cccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCC--CchhhhhhhcccccChHHHHHHHHHHH
Q psy2937         160 ERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHI--DLSEFFVPERYTFVFPLTKSMNEELVK  237 (257)
Q Consensus       160 ~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~--~l~ef~~~~~~~~~t~~~k~~~~~l~~  237 (257)
                                         |.++|+|++|||++|||++++||++|++.||.  +|++||.++.++|+||.+++|+++|++
T Consensus       129 -------------------e~~~t~Ea~~vK~aDkle~llqa~ey~~~Gn~~~~l~~ff~~~~~~~~~~~~~~~~~~l~~  189 (204)
T 4dmb_A          129 -------------------ETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEA  189 (204)
T ss_dssp             -------------------HHTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             -------------------HcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                               56678888999999999999999999999986  999999999999999999999999999


Q ss_pred             hHHHHHHhccc
Q psy2937         238 QRNELIRNKTT  248 (257)
Q Consensus       238 ~r~~~~~~~~~  248 (257)
                      +|+.+| +.+.
T Consensus       190 ~r~~~~-~~~~  199 (204)
T 4dmb_A          190 ERSTNI-AAAA  199 (204)
T ss_dssp             HHHHHH-HHHH
T ss_pred             HHHHHH-hhhc
Confidence            999999 4443
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens} Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d1xx7a_172 a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyr 5e-18
d1xx7a_172 a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyr 5e-09
d2paqa1186 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escheric 2e-16
d1ynba1167 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {A 2e-15
d1ynba1167 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {A 5e-08
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Length = 172 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 77.0 bits (189), Expect = 5e-18
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 8/119 (6%)

Query: 59  IKRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQE 118
           +++ +++A++HD+ E I+ DL P        K   E +A+K +             LF+E
Sbjct: 57  VEKALKIAIIHDLGEAIITDL-PLSAQKYLNKEEAEAKALKDV-------LPEYTELFEE 108

Query: 119 YESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELE 177
           Y    T E + VK  D +DM++QA+EYE +   +LSEF+          +++ + E +E
Sbjct: 109 YSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIE 167
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Length = 172 Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Length = 186 Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 167 Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 167 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 99.94
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 99.94
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 99.92
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 99.63
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 98.87
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 98.17
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 97.31
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 96.92
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 96.83
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 96.76
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 96.68
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 96.58
d2gz4a1200 Hypothetical protein Atu1052 {Agrobacterium tumefa 96.57
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Oxetanocin-like protein PF0395
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=1.9e-28  Score=206.54  Aligned_cols=135  Identities=29%  Similarity=0.442  Sum_probs=107.5

Q ss_pred             ChHHHHHHHHccccc---CCCCCHHHHHHHHHHhhhhhhhhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHhhhhhhcC
Q psy2937           1 MYRMAVMTFLLDENN---ETKLNRTRCMELALLHDMAECIVGDLTPYCGVSKEEKHRREDLIKRCMELALLHDMAECIVG   77 (257)
Q Consensus         1 ~~~~a~~~~~l~~~~---~~~~d~~r~~~mal~HDl~E~~~GD~~~~~~~~~~~~~r~~~~~~~~~~~al~hdl~e~~vg   77 (257)
                      |||||+||++|+..+   +.++|++||++|||+||++|+++||+|+.                                 
T Consensus        34 s~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~E~~~GDip~~---------------------------------   80 (172)
T d1xx7a_          34 SYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLS---------------------------------   80 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCHH---------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHhhhHHHHcCCCCcc---------------------------------
Confidence            799999999999653   56899999999999999999999988652                                 


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhCCChHHHHHhhhhhHHHHHHhHHHHHhccCcccccc
Q psy2937          78 DLTPYCGVSKEEKHRREDEAMKTLKSLCHTQGDRMYTLFQEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFF  157 (257)
Q Consensus        78 Di~~~~~~~~~~k~~~E~~A~~~l~~~Lp~~~~~~~~L~~EYE~~~T~EAK~vke~Dkl~~i~q~l~ye~~g~~~l~eff  157 (257)
                       ..     ....|+..|.+++..+.   |    .+.++|.                                        
T Consensus        81 -~~-----~~~~~~~~e~~~~~~l~---~----~~~~l~~----------------------------------------  107 (172)
T d1xx7a_          81 -AQ-----KYLNKEEAEAKALKDVL---P----EYTELFE----------------------------------------  107 (172)
T ss_dssp             -HH-----TTSCHHHHHHHHHHHHC---G----GGHHHHH----------------------------------------
T ss_pred             -ch-----hhhhHHHHHHHHHHHhc---c----hhHHHHH----------------------------------------
Confidence             11     11234455665554442   2    1223333                                        


Q ss_pred             cccccccchhhhHHHHHHHHHhhcCCcchhhhchhhHHHHHHHHHHHHHhhCCCchhhhhhhcccccChHHHHHHHHHHH
Q psy2937         158 VPERYTFVFPLTKSMNEELEYESQETPEAKFVKELDIVDMLVQAFEYEKAQHIDLSEFFVPERYTFVFPLTKSMNEELVK  237 (257)
Q Consensus       158 ~s~~~~i~tpevk~l~~eLeyE~~~t~ea~~vkd~DklemilQa~eYe~~~~~~l~ef~~~~~~~~~t~~~k~~~~~l~~  237 (257)
                                         +|+.++|+|+++||++|+|+|++||.+|+..|+.++++||++.. +++++.++.|+.+|.+
T Consensus       108 -------------------eye~~~s~Ea~~vk~~DkL~~~lqa~~y~~~g~~~~~ef~~~~~-~i~~~~~~~~~~~l~~  167 (172)
T d1xx7a_         108 -------------------EYSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALE-DLEKLEISRYLREIIE  167 (172)
T ss_dssp             -------------------HHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGGGHHH-HHTTSGGGGGCHHHHH
T ss_pred             -------------------HHHccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH-hhchHhHHHHHHHHHH
Confidence                               46778899999999999999999999999999999999998665 6888889999999999


Q ss_pred             hHHH
Q psy2937         238 QRNE  241 (257)
Q Consensus       238 ~r~~  241 (257)
                      +|..
T Consensus       168 e~~~  171 (172)
T d1xx7a_         168 EVRR  171 (172)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure