Psyllid ID: psy3143
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | 2.2.26 [Sep-21-2011] | |||||||
| Q921N6 | 760 | Probable ATP-dependent RN | yes | N/A | 0.916 | 0.406 | 0.566 | 4e-98 | |
| A1A4H6 | 765 | Probable ATP-dependent RN | yes | N/A | 0.759 | 0.334 | 0.670 | 2e-97 | |
| Q96GQ7 | 796 | Probable ATP-dependent RN | yes | N/A | 0.700 | 0.296 | 0.714 | 5e-97 | |
| Q09903 | 754 | ATP-dependent RNA helicas | yes | N/A | 0.664 | 0.297 | 0.589 | 1e-75 | |
| P0CQ92 | 808 | ATP-dependent RNA helicas | yes | N/A | 0.762 | 0.318 | 0.550 | 3e-74 | |
| P0CQ93 | 808 | ATP-dependent RNA helicas | N/A | N/A | 0.762 | 0.318 | 0.550 | 3e-74 | |
| A1D1R8 | 819 | ATP-dependent RNA helicas | N/A | N/A | 0.727 | 0.299 | 0.519 | 7e-74 | |
| A1CNV8 | 826 | ATP-dependent RNA helicas | N/A | N/A | 0.774 | 0.315 | 0.491 | 7e-74 | |
| Q4WRV2 | 830 | ATP-dependent RNA helicas | yes | N/A | 0.727 | 0.295 | 0.527 | 8e-74 | |
| A7F4L5 | 801 | ATP-dependent RNA helicas | N/A | N/A | 0.887 | 0.373 | 0.455 | 2e-73 |
| >sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 358 bits (918), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/330 (56%), Positives = 229/330 (69%), Gaps = 21/330 (6%)
Query: 4 SDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKL 63
SD +G + ED GS+ D D+E D++ D+E+ L K L
Sbjct: 118 SDLKGQENPGEDEAGSK--DEDSETDYSSEDEEI-------------------LTKADTL 156
Query: 64 KQVEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIP 123
K E ++ ++ + FFEDA +++ SF MNLSRPLLKAI A+ + PTPIQ A IP
Sbjct: 157 KVKEKKKKKKGQAAGGFFEDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP 216
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
V LLG+DIC CAATGTGKTAAF LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+
Sbjct: 217 VGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTK 276
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243
QLAQF S+ L+VGGL+VK QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+L
Sbjct: 277 QLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLIL 336
Query: 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303
DEADRMLDE+F QMKEIIR+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +
Sbjct: 337 DEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTD 396
Query: 304 VALNLRQEFVSFSNIDEVRLYNVLGLMLLR 333
VA LRQEF+ E ++ +L+R
Sbjct: 397 VAPFLRQEFIRIRPNREGDREAIVAALLMR 426
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Probable ATP-dependent RNA helicase. Mus musculus (taxid: 10090) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 173/258 (67%), Positives = 200/258 (77%), Gaps = 2/258 (0%)
Query: 76 GGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCA 135
GG FFEDA +EN SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DIC CA
Sbjct: 174 GG--FFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACA 231
Query: 136 ATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
ATGTGKTAAF LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF S+ L
Sbjct: 232 ATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCL 291
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
+VGGL+VK QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F
Sbjct: 292 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 351
Query: 256 SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315
QMKEIIR+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEF+
Sbjct: 352 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRI 411
Query: 316 SNIDEVRLYNVLGLMLLR 333
E ++ +L+R
Sbjct: 412 RPNREGDREAIVAALLMR 429
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Probable ATP-dependent RNA helicase. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 170/238 (71%), Positives = 193/238 (81%), Gaps = 2/238 (0%)
Query: 76 GGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCA 135
GG FFEDA +EN SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DIC CA
Sbjct: 205 GG--FFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACA 262
Query: 136 ATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
ATGTGKTAAF LP+LERL+YKPR TRVLVLVPTRELG+QV+ VTRQLAQF ++ L
Sbjct: 263 ATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCL 322
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
+VGGL+VK QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F
Sbjct: 323 AVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 382
Query: 256 SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
QMKEIIR+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEF+
Sbjct: 383 EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFI 440
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Probable ATP-dependent RNA helicase. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=drs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/224 (58%), Positives = 171/224 (76%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
+SSF MNLSRP+LK + L + PT IQ TIP+ALLG+DI G A TG+GKTAAF++PI
Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
LERLLY+P+ TRVL+L PTREL +Q + V ++A FT + V L +GGL +K+QE L
Sbjct: 318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQEL 377
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
RK PDIVIATPGR +DH+ N+ F++ +IE++V+DEADRML++ FA ++ EII+ C ++R
Sbjct: 378 RKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSR 437
Query: 270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
QTMLFSATMTD V+DL+ +SL RPVRVFVDN A L QEFV
Sbjct: 438 QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFV 481
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ATP-binding RNA helicase involved in ribosome assembly. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DRS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 185/267 (69%), Gaps = 10/267 (3%)
Query: 80 FFEDAPPVEEN---SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAA 136
FF P + SSF MNLSRPLL+A+ +L + PTPIQA IP+ALLGRDI G A
Sbjct: 208 FFSSDPTTTDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAV 267
Query: 137 TGTGKTAAFMLPILERLLYKPRDDQNT--RVLVLVPTRELGVQVYQVTRQLAQFTSVEV- 193
TG+GKTAAFM+PILERL Y+ R RVLVL PTREL VQ V + LA+ ++V
Sbjct: 268 TGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVR 327
Query: 194 -ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252
AL VGGL + Q LR PDI+IATPGRL+DHL NTPSF+LS ++VLV+DEADRML+
Sbjct: 328 FALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEA 387
Query: 253 HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
F +++EII+ C R+RQTMLFSATMTD+V++LV +SL +P+RVFVD A L QEF
Sbjct: 388 GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEF 447
Query: 313 VSFSNIDEVRLYNVLGLM--LLRENCL 337
V + D+ R ++L L +RE C+
Sbjct: 448 VRIRS-DDSRSPSLLALCKRTIREKCI 473
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ATP-binding RNA helicase involved in ribosome assembly. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DRS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 185/267 (69%), Gaps = 10/267 (3%)
Query: 80 FFEDAPPVEEN---SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAA 136
FF P + SSF MNLSRPLL+A+ +L + PTPIQA IP+ALLGRDI G A
Sbjct: 208 FFSSDPTTTDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAV 267
Query: 137 TGTGKTAAFMLPILERLLYKPRDDQNT--RVLVLVPTRELGVQVYQVTRQLAQFTSVEV- 193
TG+GKTAAFM+PILERL Y+ R RVLVL PTREL VQ V + LA+ ++V
Sbjct: 268 TGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVR 327
Query: 194 -ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252
AL VGGL + Q LR PDI+IATPGRL+DHL NTPSF+LS ++VLV+DEADRML+
Sbjct: 328 FALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEA 387
Query: 253 HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
F +++EII+ C R+RQTMLFSATMTD+V++LV +SL +P+RVFVD A L QEF
Sbjct: 388 GFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEF 447
Query: 313 VSFSNIDEVRLYNVLGLM--LLRENCL 337
V + D+ R ++L L +RE C+
Sbjct: 448 VRIRS-DDSRSPSLLALCKRTIREKCI 473
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ATP-binding RNA helicase involved in ribosome assembly. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=drs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 179/252 (71%), Gaps = 7/252 (2%)
Query: 66 VEAEEYEENEGGKEFF----EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAAT 121
V+AEE E+ K FF + N SF NLSRP+L+ + ++N+ PTPIQ T
Sbjct: 273 VDAEEAEKR---KAFFAPEEKSTAASTSNRSFQDFNLSRPILRGLASVNFTTPTPIQQKT 329
Query: 122 IPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181
IPVALLG+DI G A TG+GKTAAF++PILERLL++PR +RV +L+PTREL VQ Y V
Sbjct: 330 IPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNV 389
Query: 182 TRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241
+LA T + VGG ++ QE++L+K PD++IATPGR +DH+ N+PSF++ +E+L
Sbjct: 390 ATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEIL 449
Query: 242 VLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN 301
VLDEADRML++ FA ++ EI+ ++RQTMLFSATMTD+V+ L+ V L RPVR+ VD+
Sbjct: 450 VLDEADRMLEDGFADELNEILTTIPQSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSK 509
Query: 302 HEVALNLRQEFV 313
++NL QEFV
Sbjct: 510 KNTSMNLTQEFV 521
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ATP-binding RNA helicase involved in ribosome assembly. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=drs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 191/285 (67%), Gaps = 24/285 (8%)
Query: 33 PDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFF--EDAPPVEEN 90
PDDE+ D+ + G +V+AEE E+ K FF E+ E
Sbjct: 264 PDDEVASDD-----------------ESGAESEVDAEEAEKR---KAFFAPEEKTTEEPT 303
Query: 91 S--SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
S SF NLSRP+L+ + ++N+ PTPIQ TIPVALLG+DI G A TG+GKTAAF++P
Sbjct: 304 SKRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVP 363
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
ILERLL++PR +RV +L+PTREL VQ Y V +LA T V VGG ++ QE++
Sbjct: 364 ILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENI 423
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
L+K PD++IATPGR +DH+ N+PSF++ +E+LVLDEADRML++ FA ++ EI+ ++
Sbjct: 424 LKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 483
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
RQTMLFSATMTD+V+ L+ V L RPVR+ VD+ ++NL QEFV
Sbjct: 484 RQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFV 528
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ATP-binding RNA helicase involved in ribosome assembly. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=drs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 133/252 (52%), Positives = 181/252 (71%), Gaps = 7/252 (2%)
Query: 66 VEAEEYEENEGGKEFF---EDAPPVEE-NSSFHQMNLSRPLLKAIGALNYIYPTPIQAAT 121
V+AEE E+ K FF E + V N SF NLSRP+L+ + ++N+ PTPIQ T
Sbjct: 284 VDAEEAEKR---KAFFAPEEKSTAVSTFNRSFQDFNLSRPILRGLASVNFTTPTPIQQKT 340
Query: 122 IPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181
IPVALLG+DI G A TG+GKTAAF++PILERLL++PR +RV +L+PTREL VQ Y V
Sbjct: 341 IPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNV 400
Query: 182 TRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241
+LA T + VGG ++ QE++L+K PD++IATPGR +DH+ N+PSF++ +E+L
Sbjct: 401 ATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEIL 460
Query: 242 VLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN 301
VLDEADRML++ FA ++ EI+ ++RQTMLFSATMTD+V+ L+ V L RPVR+ VD+
Sbjct: 461 VLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSK 520
Query: 302 HEVALNLRQEFV 313
++NL QEFV
Sbjct: 521 KNTSMNLTQEFV 532
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ATP-binding RNA helicase involved in ribosome assembly. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=drs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 207/314 (65%), Gaps = 15/314 (4%)
Query: 3 SSDEEGNKEDKE--DNEGSEEDDVDAEEDFALPDDEMKH-DNIKNRQKLIGKKKQKRLAK 59
S++E G +ED E DNEG+E+DD D + A P H D+ + + + +
Sbjct: 189 SAEESGAEEDSEASDNEGAEDDDSD-NDSVASP---APHPDDAASEASDDDEDIDEDPEE 244
Query: 60 EGKLKQVEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQA 119
K + A E + +G K E NS+F M+LSRP+L+ + + + PTPIQ+
Sbjct: 245 AAKREAFFAPEEKPVKGAKP--------ELNSTFQSMSLSRPILRGLATVGFTQPTPIQS 296
Query: 120 ATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179
TIPVALLG+D+ G A TG+GKTAAF++P+LERLLY+P+ +RV +L+PTREL +Q +
Sbjct: 297 KTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRVAILMPTRELAIQCH 356
Query: 180 QVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239
V +LA T ++ L+VGGL +KVQE+ LR PD++IATPGR +DH+ N+PSF++ +E
Sbjct: 357 AVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLE 416
Query: 240 VLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299
+LVLDEADRML+ FA ++ EI+ ++RQTMLFSATM+ +V++L+ V L RPVR+ VD
Sbjct: 417 ILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFSATMSSSVDNLIRVGLNRPVRLLVD 476
Query: 300 NNHEVALNLRQEFV 313
+ A L QEF+
Sbjct: 477 SQKSTAGTLTQEFI 490
|
ATP-binding RNA helicase involved in ribosome assembly. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| 328704199 | 771 | PREDICTED: probable ATP-dependent RNA he | 0.857 | 0.374 | 0.717 | 1e-115 | |
| 157125871 | 804 | DEAD box ATP-dependent RNA helicase [Aed | 0.952 | 0.399 | 0.613 | 1e-109 | |
| 312375048 | 879 | hypothetical protein AND_15188 [Anophele | 0.905 | 0.346 | 0.620 | 1e-105 | |
| 170044624 | 807 | ATP-dependent RNA helicase DRS1 [Culex q | 0.881 | 0.368 | 0.6 | 1e-104 | |
| 158287566 | 809 | AGAP011084-PA [Anopheles gambiae str. PE | 0.896 | 0.373 | 0.603 | 1e-104 | |
| 357617988 | 776 | putative DEAD box ATP-dependent RNA heli | 0.928 | 0.403 | 0.604 | 1e-104 | |
| 307173483 | 694 | Probable ATP-dependent RNA helicase DDX2 | 0.910 | 0.442 | 0.593 | 1e-104 | |
| 350416437 | 741 | PREDICTED: probable ATP-dependent RNA he | 0.750 | 0.341 | 0.700 | 1e-103 | |
| 340717314 | 740 | PREDICTED: probable ATP-dependent RNA he | 0.691 | 0.314 | 0.752 | 1e-103 | |
| 380015035 | 710 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.691 | 0.328 | 0.735 | 1e-102 |
| >gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/301 (71%), Positives = 252/301 (83%), Gaps = 12/301 (3%)
Query: 14 EDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEE 73
E + EE D D+ L +DE+K D IK+RQKL+GK+ +K+ E +V E+ EE
Sbjct: 99 EHEDYKEESDCDS-----LSEDELKKDGIKDRQKLVGKRNKKKKEVEENKNEVTVEDEEE 153
Query: 74 NEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICG 133
EDAPP EEN+SF+QMN+SRPL+KAI ALNY++PTPIQAA IPVALLGRDICG
Sbjct: 154 FF------EDAPPFEENASFYQMNISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICG 207
Query: 134 CAATGTGKTAAFMLPILERLLYKPRD-DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192
CAATGTGKTAA+MLPILERLLY+P+ TRVLVLVPTRELGVQVYQVT+QLAQFTSVE
Sbjct: 208 CAATGTGKTAAYMLPILERLLYRPKGFTPITRVLVLVPTRELGVQVYQVTKQLAQFTSVE 267
Query: 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252
V LSVGGLE+KVQES+LRK PD+VIATPGRLLDHL NTPSFSL+D+EVLVLDEADRMLDE
Sbjct: 268 VGLSVGGLELKVQESILRKNPDVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDE 327
Query: 253 HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
+FA QMKEII +C+RTRQTMLFSATMTDAVNDL +VSL++PV++FVD+N +VA NLRQEF
Sbjct: 328 NFADQMKEIINMCARTRQTMLFSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEF 387
Query: 313 V 313
V
Sbjct: 388 V 388
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti] gi|108873494|gb|EAT37719.1| AAEL010317-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/334 (61%), Positives = 258/334 (77%), Gaps = 13/334 (3%)
Query: 9 NKEDKEDNEGSEEDDVDAEED-FALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVE 67
+KE+ E E +++ D ++ D L DDE+KHD ++ ++K K +++ + + K+ ++E
Sbjct: 106 SKENAEMLEEADDHDPNSYHDEVDLSDDELKHDVMRVKEK---KGRKREIPTDNKV-EIE 161
Query: 68 AEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALL 127
EE E ++FFE+A EE SSF+QMNLSRPL+KAIG L YIYPTPIQAATIP+ALL
Sbjct: 162 DEEDEP----QDFFEEAGGNEEISSFYQMNLSRPLMKAIGVLGYIYPTPIQAATIPIALL 217
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLA 186
GRDICGCAATGTGKTAA+MLP LERLLYKP Q TRVLVLVPTRELG QVYQV++QL
Sbjct: 218 GRDICGCAATGTGKTAAYMLPTLERLLYKPSAAQAVTRVLVLVPTRELGAQVYQVSKQLT 277
Query: 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246
QFTS+EV +++GGL+VK QE+VLR PD+VIATPGRL+DH+ NTPSFSL IEVL+LDEA
Sbjct: 278 QFTSIEVGIAIGGLDVKAQEAVLRTNPDVVIATPGRLIDHIKNTPSFSLDSIEVLILDEA 337
Query: 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL 306
DRMLDE+FA QMKEII+ CS+TRQTMLFSATMTD V DL +VSLT+PV+VFV+NN VA
Sbjct: 338 DRMLDEYFAEQMKEIIQSCSKTRQTMLFSATMTDQVKDLAAVSLTKPVKVFVNNNQTVAF 397
Query: 307 NLRQEFVSFSNIDEVRLYNVLGLMLLR---ENCL 337
NLRQEF+ E +L ++ R ++C+
Sbjct: 398 NLRQEFIRIREGREADREPLLAALICRTFHDHCM 431
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/311 (62%), Positives = 237/311 (76%), Gaps = 6/311 (1%)
Query: 32 LPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDAPPVEEN- 90
L DDE+KHD +K +++ K + V+ +E E+ G K++FE+A E+
Sbjct: 149 LSDDELKHDYMKVKERKGRKARAAAAENGQAEPTVKVQEDTED-GAKDYFEEAEGTNEHI 207
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
SF+QM+LSRPL+KAIGAL YIYPTPIQA+TIP+ALLGRDICGCAATGTGKTAA+MLP L
Sbjct: 208 QSFYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTL 267
Query: 151 ERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
ERLLYKP Q TRVLVLVPTRELG QVYQV +QL QFT+VEV +++GGL+VK QE+VL
Sbjct: 268 ERLLYKPNAAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVEVGIAIGGLDVKAQEAVL 327
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
R PDIVIATPGRL+DH+ NTPSFSL IE+L+LDEADRMLDE+FA QMKEIIR CS TR
Sbjct: 328 RTNPDIVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATR 387
Query: 270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329
QTMLFSATMT+ V DL +VSL +PV++FV+NN VA NLRQEF+ E +L
Sbjct: 388 QTMLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRVREGREADREPILAA 447
Query: 330 MLLR---ENCL 337
++ R ++C+
Sbjct: 448 LVCRTFHDHCM 458
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus] gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/330 (60%), Positives = 242/330 (73%), Gaps = 33/330 (10%)
Query: 22 DDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFF 81
D +AE D L DDE+KHD ++ ++K K +KR E EN+G E
Sbjct: 126 DSYNAEID--LSDDELKHDTMRTKEK----KGRKR-------------EVSENDGKVEIE 166
Query: 82 ED----------APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDI 131
++ A EE SSF+QMNLSRPL+KAIG L YIYPTPIQAATIP+AL+GRD+
Sbjct: 167 DEDEEQQDFFEEAGGNEEISSFYQMNLSRPLMKAIGFLGYIYPTPIQAATIPIALMGRDV 226
Query: 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTS 190
CGCAATGTGKTAA+MLP LERLLYKP Q TRVLVLVPTRELG QVYQVT+QL Q+TS
Sbjct: 227 CGCAATGTGKTAAYMLPTLERLLYKPSAAQAVTRVLVLVPTRELGAQVYQVTKQLTQYTS 286
Query: 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250
+EV +++GGL+VK QE+VLR PDIVIATPGRL+DH+ NTPSFSL IEVL+LDEADRML
Sbjct: 287 IEVGIAIGGLDVKAQEAVLRTNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRML 346
Query: 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
DE+FA QMKEII+ CS++RQTMLFSATMTD V DL +VSL++PV+VFV+NN VA NLRQ
Sbjct: 347 DEYFAEQMKEIIQSCSKSRQTMLFSATMTDQVKDLAAVSLSKPVKVFVNNNQTVAFNLRQ 406
Query: 311 EFVSFSNIDEVRLYNVLGLMLLR---ENCL 337
EF+ + +L ++ R ++C+
Sbjct: 407 EFIRIRESRDADREPILAALICRTFHDHCM 436
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST] gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/320 (60%), Positives = 245/320 (76%), Gaps = 18/320 (5%)
Query: 28 EDFALPDDEMKHDNIKNRQKLIGKKKQKRLAK-EGKLKQVEAEEYEENEGGKEFFEDAPP 86
E+ L DDE+KHD ++ + ++K K+L + E VE +E E+ +++FE+
Sbjct: 113 EEVDLSDDELKHDYMR-----VKERKGKKLTEAENGGPTVEVKEDTEDGTKEDYFEE--- 164
Query: 87 VEENS-----SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
+EEN+ SF+QM+LSRPL+KAIGAL YIYPTPIQA+TIP+AL+GRDICGCAATGTGK
Sbjct: 165 IEENANGEIQSFYQMDLSRPLMKAIGALGYIYPTPIQASTIPIALMGRDICGCAATGTGK 224
Query: 142 TAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGL 200
TAA+MLP +ERLLYKP Q TRVLVLVPTRELG QVYQV +QL QFT+V+V +++GGL
Sbjct: 225 TAAYMLPTIERLLYKPNVAQAVTRVLVLVPTRELGAQVYQVAKQLTQFTNVDVGIAIGGL 284
Query: 201 EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
+VK QE+VLRK PD+VIATPGRL+DH+ NTPSFSL IE+L+LDEADRMLDE+FA QMKE
Sbjct: 285 DVKAQEAVLRKNPDVVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKE 344
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
IIR CS TRQTMLFSATMT+ V DL +VSL +PV++FV+NN VA NLRQEF+ E
Sbjct: 345 IIRSCSATRQTMLFSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRIREGRE 404
Query: 321 VRLYNVLGLMLLR---ENCL 337
+L ++ R ++C+
Sbjct: 405 ADREAILAALVCRTFHDHCM 424
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357617988|gb|EHJ71096.1| putative DEAD box ATP-dependent RNA helicase [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/331 (60%), Positives = 253/331 (76%), Gaps = 18/331 (5%)
Query: 7 EGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQV 66
+GN +D E +EG ++ +D +F + DDE+K D IK + K + KK+ E +LK+
Sbjct: 92 KGNIDDSE-SEGEKDAGLD---EFEISDDELKKDEIKTKTKKLTKKQML----EEELKKD 143
Query: 67 EAE----EYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATI 122
E E EY+ + FFE+ PP +E ++F+ MNLSRP+LKAI +LNY++PTPIQAATI
Sbjct: 144 EGEGARIEYDSD-----FFEEPPPYDEQATFYMMNLSRPMLKAIASLNYVHPTPIQAATI 198
Query: 123 PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182
P+ALLG+DIC CAATGTGKTAA+M+P+LERLLYKP ++ TRVLVLVPTRELG QV+ VT
Sbjct: 199 PIALLGKDICACAATGTGKTAAYMVPVLERLLYKP-TERRTRVLVLVPTRELGAQVHTVT 257
Query: 183 RQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242
RQLAQFTSV + LSVGGL+VK QESVLR+ PD+VIATPGRL+DH+ NTPSF L+ IEVL+
Sbjct: 258 RQLAQFTSVTIGLSVGGLDVKYQESVLRRHPDVVIATPGRLIDHVRNTPSFDLNSIEVLI 317
Query: 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302
LDEADRMLDE+FA QMKEIIR CS RQTMLFSATM+D V DL +VSL +PV++F+D+N
Sbjct: 318 LDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSDQVRDLAAVSLKKPVKLFLDSNK 377
Query: 303 EVALNLRQEFVSFSNIDEVRLYNVLGLMLLR 333
+VA NLRQEFV E +L ++ R
Sbjct: 378 DVAFNLRQEFVRIRKERECDREAILAALVCR 408
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/332 (59%), Positives = 250/332 (75%), Gaps = 25/332 (7%)
Query: 2 DSSDEEGN-KEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKE 60
+SSDEE + + K+ +GS+ D D+ F DE D + K I +K + +L +
Sbjct: 11 ESSDEEDDFQPRKQRKKGSK--DFDSNFQFISSTDEYNQDPWNDLSKYIKRKPKTKL--D 66
Query: 61 GKLKQVEAEEYEENEGGKEFFEDAPPVEEN------------------SSFHQMNLSRPL 102
K++++ +EY E +G ++ F+ P +N S+F+QMNLSRPL
Sbjct: 67 DKIRKIR-KEYNEQDGIEDDFKIEPNTNQNDDTISLSEDELKKDSQTYSTFYQMNLSRPL 125
Query: 103 LKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN 162
LKAI A+N+I PTPIQAATIPVAL+GRDICGCAATGTGKTAA+MLP LERLLY+P D
Sbjct: 126 LKAITAMNFIQPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLLYRPLDGPA 185
Query: 163 -TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPG 221
+RVLVLVPTRELGVQVYQVT+QL QFT+VEV LSVGGL+VKVQESVLRK PDIVIATPG
Sbjct: 186 VSRVLVLVPTRELGVQVYQVTKQLTQFTTVEVGLSVGGLDVKVQESVLRKNPDIVIATPG 245
Query: 222 RLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281
RL+DHL+N P+FSL++IEVL+LDEADRMLDE+FA QMK I++ C+RT+QT+LFSATMT+
Sbjct: 246 RLIDHLNNAPTFSLNNIEVLILDEADRMLDEYFAEQMKYIVKQCARTKQTILFSATMTEE 305
Query: 282 VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
V DL +VSL P+++FVD+N +VA NLRQEF+
Sbjct: 306 VKDLAAVSLNNPIKIFVDSNQDVAFNLRQEFI 337
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350416437|ref|XP_003490948.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 216/254 (85%), Gaps = 1/254 (0%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
FE+ +E +++F+QMNLSRPLLKAI A+N+++PTPIQAATIPVAL+GRDICGCAATGTG
Sbjct: 148 FEEYSNIETHATFYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTG 207
Query: 141 KTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
KTAA+MLP LERLLY+P D + +RVLVLVPTRELGVQVYQVT+QL+QFT++EV LSVGG
Sbjct: 208 KTAAYMLPTLERLLYRPLDGPSISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGG 267
Query: 200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259
L+VKVQE+VLRK PDIVIATPGRL+DHL NTPSFSL IEVL+LDEADRMLDE+FA QMK
Sbjct: 268 LDVKVQEAVLRKNPDIVIATPGRLIDHLRNTPSFSLDSIEVLILDEADRMLDEYFAEQMK 327
Query: 260 EIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319
I++ CSR+RQT+LFSATMT+ V DL +VSL +PV+VFVD+N +VA NLRQEF+
Sbjct: 328 YIVKQCSRSRQTILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKER 387
Query: 320 EVRLYNVLGLMLLR 333
E +L ++ R
Sbjct: 388 EGDREAILAALICR 401
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340717314|ref|XP_003397129.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/234 (75%), Positives = 210/234 (89%), Gaps = 1/234 (0%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
FE+ +E +++F+QMNLSRPLLKAI A+N+++PTPIQAATIPVALLGRDICGCAATGTG
Sbjct: 147 FEEYTNIETHATFYQMNLSRPLLKAITAMNFVHPTPIQAATIPVALLGRDICGCAATGTG 206
Query: 141 KTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
KTAA+MLP LERLLY+P D + +RVLVLVPTRELGVQVYQVT+QL+QFT++EV LSVGG
Sbjct: 207 KTAAYMLPTLERLLYRPLDGPSISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGG 266
Query: 200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259
L+VKVQE+VLRK PDIVIATPGRL+DHL NTPSFSL IEVL+LDEADRMLDE+FA QMK
Sbjct: 267 LDVKVQEAVLRKNPDIVIATPGRLIDHLRNTPSFSLDSIEVLILDEADRMLDEYFAEQMK 326
Query: 260 EIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
I++ CSR+RQT+LFSATMT+ V DL +VSL +PV+VFVD+N +VA NLRQEF+
Sbjct: 327 YIVKQCSRSRQTILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFI 380
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015035|ref|XP_003691517.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX27-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/234 (73%), Positives = 208/234 (88%), Gaps = 1/234 (0%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
FE+ +E +++FHQMNLSRPLLKAI A+N+++PTPIQAATIPVAL+GRDICGCAATGTG
Sbjct: 146 FEEYSNIESHATFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTG 205
Query: 141 KTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
KTAA+MLP LERLLY+P D +RVLVLVPTRELGVQVYQVT+QL+QFT++EV LSVGG
Sbjct: 206 KTAAYMLPTLERLLYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGG 265
Query: 200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259
L+VK QE+VLR+ PDIVIATPGRL+DHL NTP+FSL IEVL+LDEADRMLDE+FA QMK
Sbjct: 266 LDVKAQEAVLRRSPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMK 325
Query: 260 EIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
I++ CSR+RQT+LFSATMT+ V DL +VSL +PV+VF+D+N +VA NLRQEF+
Sbjct: 326 YIVKQCSRSRQTILFSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFI 379
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| FB|FBgn0021995 | 782 | Rs1 "Rs1" [Drosophila melanoga | 0.881 | 0.379 | 0.558 | 7.2e-84 | |
| ZFIN|ZDB-GENE-031001-8 | 776 | ddx27 "DEAD (Asp-Glu-Ala-Asp) | 0.813 | 0.353 | 0.560 | 2.4e-76 | |
| UNIPROTKB|F1NQV5 | 758 | DDX27 "Uncharacterized protein | 0.685 | 0.304 | 0.662 | 1.3e-75 | |
| UNIPROTKB|A1A4H6 | 765 | DDX27 "Probable ATP-dependent | 0.744 | 0.328 | 0.621 | 1.7e-75 | |
| UNIPROTKB|F1Q073 | 767 | DDX27 "Uncharacterized protein | 0.685 | 0.301 | 0.662 | 2.1e-75 | |
| UNIPROTKB|J9P9C6 | 788 | DDX27 "Uncharacterized protein | 0.685 | 0.293 | 0.662 | 2.1e-75 | |
| UNIPROTKB|Q96GQ7 | 796 | DDX27 "Probable ATP-dependent | 0.685 | 0.290 | 0.662 | 2.1e-75 | |
| UNIPROTKB|E1C187 | 759 | DDX27 "Uncharacterized protein | 0.685 | 0.304 | 0.659 | 9.3e-75 | |
| MGI|MGI:2385884 | 760 | Ddx27 "DEAD (Asp-Glu-Ala-Asp) | 0.744 | 0.330 | 0.613 | 1.5e-74 | |
| UNIPROTKB|I3LQ10 | 684 | LOC100626268 "Uncharacterized | 0.741 | 0.365 | 0.595 | 3.3e-70 |
| FB|FBgn0021995 Rs1 "Rs1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 173/310 (55%), Positives = 225/310 (72%)
Query: 32 LPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENS 91
L +DE+KHDN++ R+K KKK+K+ +E + + +A E+ +
Sbjct: 107 LSEDELKHDNLRLREKKESKKKKKKAGEEDEEDE-------GEKMQFADTVEAN--EQIT 157
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
SF+QMNLSRPL++AIG L YIYPTPIQA+TIPVALLGRDI +MLP LE
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217
Query: 152 RLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
RLLY+P +++ TRVLVLVPTRELG QVYQVT+QL QFT+++V L++GGL+VK QE+VLR
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ PDIVIATPGRL+DH+ NTPSF+L IEVL+LDEADRMLDE+FA QMKEII C +TRQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
TMLFSATM++ V DL +VSL +P++VFV+NN +VA NLRQEF+ E +L +
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397
Query: 331 LLR---ENCL 337
+ R ++C+
Sbjct: 398 ICRTFHDHCM 407
|
|
| ZFIN|ZDB-GENE-031001-8 ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 157/280 (56%), Positives = 195/280 (69%)
Query: 34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSF 93
DD+ D + + + KK K+ K K+ DA +EN +F
Sbjct: 150 DDDDDEDEFSSADEEVLKKADTLREKQKKGKR------KMADTTEGFFEDASQYDENLTF 203
Query: 94 HQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERL 153
H MNLSRPLLKAI + + PTPIQ A +PV LLG+DI FMLP+LERL
Sbjct: 204 HDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERL 263
Query: 154 LYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
+YKPR+ Q TRVLVLVPTRELG+QV+ V RQLAQFT++ L+VGGL++K QE+ LR P
Sbjct: 264 IYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGP 323
Query: 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
D++IATPGRL+DHLHNTPSF LS IE+L+LDEADRMLDE+F QMKEIIR+C+ RQTML
Sbjct: 324 DVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTML 383
Query: 274 FSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
FSATM++ V DL SVSL +PVR+FV++N +VA LRQEFV
Sbjct: 384 FSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFV 423
|
|
| UNIPROTKB|F1NQV5 DDX27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 153/231 (66%), Positives = 178/231 (77%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA ++N SF MNLSRPLLKAI AL + PTPIQ A IPV LLG+DI
Sbjct: 172 DASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 231
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F+LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF+SV L+VGGL+V
Sbjct: 232 AAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDV 291
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
K QE+ LR PDI+IATPGRL+DHLHN PSF LS +EVL+LDEADRMLDE+F QMKEII
Sbjct: 292 KTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEII 351
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
RLCSR RQTMLFSATMT+ V DL SVSL P R+FV++N +VA LRQEF+
Sbjct: 352 RLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFI 402
|
|
| UNIPROTKB|A1A4H6 DDX27 "Probable ATP-dependent RNA helicase DDX27" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 156/251 (62%), Positives = 183/251 (72%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA +EN SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DI
Sbjct: 179 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 238
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF S+ L+VGGL+V
Sbjct: 239 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDV 298
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
K QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F QMKEII
Sbjct: 299 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322
R+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEF+ E
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 418
Query: 323 LYNVLGLMLLR 333
++ +L+R
Sbjct: 419 REAIVAALLMR 429
|
|
| UNIPROTKB|F1Q073 DDX27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 153/231 (66%), Positives = 176/231 (76%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA +EN SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DI
Sbjct: 179 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 238
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF ++ L+VGGL+V
Sbjct: 239 AAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDV 298
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
K QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F QMKEII
Sbjct: 299 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
R+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEFV
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFV 409
|
|
| UNIPROTKB|J9P9C6 DDX27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 153/231 (66%), Positives = 176/231 (76%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA +EN SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DI
Sbjct: 200 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 259
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF ++ L+VGGL+V
Sbjct: 260 AAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDV 319
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
K QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F QMKEII
Sbjct: 320 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 379
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
R+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEFV
Sbjct: 380 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFV 430
|
|
| UNIPROTKB|Q96GQ7 DDX27 "Probable ATP-dependent RNA helicase DDX27" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 153/231 (66%), Positives = 176/231 (76%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA +EN SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DI
Sbjct: 210 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 269
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F LP+LERL+YKPR TRVLVLVPTRELG+QV+ VTRQLAQF ++ L+VGGL+V
Sbjct: 270 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDV 329
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
K QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F QMKEII
Sbjct: 330 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 389
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
R+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEF+
Sbjct: 390 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFI 440
|
|
| UNIPROTKB|E1C187 DDX27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 153/232 (65%), Positives = 178/232 (76%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXX-XXXXXXXX 141
DA ++N SF MNLSRPLLKAI AL + PTPIQ A IPV LLG+DI
Sbjct: 172 DASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGK 231
Query: 142 XXXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
F+LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF+SV L+VGGL+
Sbjct: 232 TAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLD 291
Query: 202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261
VK QE+ LR PDI+IATPGRL+DHLHN PSF LS +EVL+LDEADRMLDE+F QMKEI
Sbjct: 292 VKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEI 351
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
IRLCSR RQTMLFSATMT+ V DL SVSL P R+FV++N +VA LRQEF+
Sbjct: 352 IRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFI 403
|
|
| MGI|MGI:2385884 Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 154/251 (61%), Positives = 183/251 (72%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA +++ SF MNLSRPLLKAI A+ + PTPIQ A IPV LLG+DI
Sbjct: 176 DASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 235
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQF S+ L+VGGL+V
Sbjct: 236 AAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDV 295
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
K QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F QMKEII
Sbjct: 296 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 355
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322
R+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEF+ E
Sbjct: 356 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 415
Query: 323 LYNVLGLMLLR 333
++ +L+R
Sbjct: 416 REAIVAALLMR 426
|
|
| UNIPROTKB|I3LQ10 LOC100626268 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 153/257 (59%), Positives = 180/257 (70%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
DA +EN SF MNLSRPLLKAI + + PTPIQ A IPV LLG+DI
Sbjct: 203 DASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 262
Query: 143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-----FTSVEVALSV 197
F LP+LERL+YKPR TRVLVLVPTRELG+QV+ VT+QLAQ T++ L
Sbjct: 263 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTIS-GLFA 321
Query: 198 GGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
GGL+VK QE+ LR PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F
Sbjct: 322 GGLDVKSQEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 381
Query: 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316
QMKEIIR+CS RQTMLFSATMTD V DL SVSL PVR+FV++N +VA LRQEF+
Sbjct: 382 QMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 441
Query: 317 NIDEVRLYNVLGLMLLR 333
E ++ +L+R
Sbjct: 442 PNREGDREAIVAALLMR 458
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6FW42 | DRS1_CANGA | 3, ., 6, ., 4, ., 1, 3 | 0.5040 | 0.7121 | 0.3310 | yes | N/A |
| Q4I830 | DRS1_GIBZE | 3, ., 6, ., 4, ., 1, 3 | 0.5081 | 0.6913 | 0.2927 | yes | N/A |
| Q09903 | DRS1_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.5892 | 0.6646 | 0.2970 | yes | N/A |
| A2QAX7 | DRS1_ASPNC | 3, ., 6, ., 4, ., 1, 3 | 0.5193 | 0.7240 | 0.2961 | yes | N/A |
| Q54TJ4 | DDX27_DICDI | 3, ., 6, ., 4, ., 1, 3 | 0.5307 | 0.6765 | 0.2911 | yes | N/A |
| Q2UQI6 | DRS1_ASPOR | 3, ., 6, ., 4, ., 1, 3 | 0.5117 | 0.7359 | 0.3024 | yes | N/A |
| P0CQ92 | DRS1_CRYNJ | 3, ., 6, ., 4, ., 1, 3 | 0.5505 | 0.7626 | 0.3180 | yes | N/A |
| Q96GQ7 | DDX27_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.7142 | 0.7002 | 0.2964 | yes | N/A |
| Q9ZRZ8 | RH28_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.5171 | 0.7744 | 0.3307 | yes | N/A |
| Q921N6 | DDX27_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.5666 | 0.9169 | 0.4065 | yes | N/A |
| Q4WRV2 | DRS1_ASPFU | 3, ., 6, ., 4, ., 1, 3 | 0.5277 | 0.7270 | 0.2951 | yes | N/A |
| Q6BTL5 | DRS1_DEBHA | 3, ., 6, ., 4, ., 1, 3 | 0.5234 | 0.6913 | 0.3022 | yes | N/A |
| A1A4H6 | DDX27_BOVIN | 3, ., 6, ., 4, ., 1, 3 | 0.6705 | 0.7596 | 0.3346 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 337 | |||
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-92 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 5e-78 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-62 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-59 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 2e-56 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 2e-49 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 7e-49 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 9e-47 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-44 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 3e-44 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-41 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 6e-41 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 3e-38 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-36 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-33 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 2e-10 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 5e-09 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 6e-09 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 1e-07 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 2e-06 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 4e-05 | |
| pfam06862 | 436 | pfam06862, DUF1253, Protein of unknown function (D | 3e-04 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 3e-04 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.001 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 0.001 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 0.003 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 1e-92
Identities = 100/205 (48%), Positives = 134/205 (65%), Gaps = 2/205 (0%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILER 152
F ++ LS LL+ I AL + PTPIQA IP L GRD+ G A TG+GKTAAF++PILE+
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
L P+ D + L+L PTREL +Q+ +V R+L + T+++V + GG + Q L++
Sbjct: 61 LDPSPKKDG-PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRG 119
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
P IV+ATPGRLLD L LS ++ LVLDEADRMLD F Q++EI++L + RQT+
Sbjct: 120 PHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTL 178
Query: 273 LFSATMTDAVNDLVSVSLTRPVRVF 297
LFSATM V DL L PVR+
Sbjct: 179 LFSATMPKEVRDLARKFLRNPVRIL 203
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 5e-78
Identities = 94/226 (41%), Positives = 134/226 (59%), Gaps = 5/226 (2%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
F + LS LL+A+ L + PTPIQ A IP+ L GRD+ G A TGTGKTAAF+LP+L
Sbjct: 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL 88
Query: 151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQESVL 209
+++L L+L PTREL VQ+ + R+L + + VA+ GG+ ++ Q L
Sbjct: 89 QKILKSVERKYV-SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL 147
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
++ DIV+ATPGRLLD + LS +E LVLDEADRMLD F +++I++ R
Sbjct: 148 KRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDR 206
Query: 270 QTMLFSATMTDAVNDLVSVSLTRP--VRVFVDNNHEVALNLRQEFV 313
QT+LFSATM D + +L L P + V V+ ++Q ++
Sbjct: 207 QTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYL 252
|
Length = 513 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-62
Identities = 76/172 (44%), Positives = 103/172 (59%), Gaps = 4/172 (2%)
Query: 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174
TPIQA IP L G+D+ A TG+GKT AF+LPIL+ LL K + LVL PTREL
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPKKGG---PQALVLAPTREL 57
Query: 175 GVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK-CPDIVIATPGRLLDHLHNTPSF 233
Q+Y+ ++L + + VAL GG +K Q L+K DI++ TPGRLLD L
Sbjct: 58 AEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLK 117
Query: 234 SLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDL 285
L ++++LVLDEA R+LD F ++EI+ RQ +L SAT+ + DL
Sbjct: 118 LLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 2e-59
Identities = 94/209 (44%), Positives = 123/209 (58%), Gaps = 3/209 (1%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILER 152
F ++ L LL+A+ Y PT IQA IP AL GRD+ G A TGTGKTAAF+LP L+
Sbjct: 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQH 62
Query: 153 LLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
LL PR R+L+L PTREL +QV R+LA+ T +++A GG+ V +
Sbjct: 63 LLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE 122
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
DIV+ATPGRLL ++ +F +E L+LDEADRMLD FA ++ I +QT
Sbjct: 123 NQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 181
Query: 272 MLFSATMT-DAVNDLVSVSLTRPVRVFVD 299
+LFSAT+ DAV D L PV V +
Sbjct: 182 LLFSATLEGDAVQDFAERLLNDPVEVEAE 210
|
Length = 434 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 2e-56
Identities = 97/254 (38%), Positives = 136/254 (53%), Gaps = 16/254 (6%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
++F + L LL + L Y TPIQA ++P L G+D+ A TG+GKTAAF L +
Sbjct: 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGL 62
Query: 150 LERLLYKPRDDQNTRV--LVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQE 206
L++L D + RV LVL PTREL QV + R+LA+F +++V GG+ + Q
Sbjct: 63 LQKL-----DVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI 117
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L I++ TPGR+LDHL + L + LVLDEADRMLD F + IIR
Sbjct: 118 DSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP 176
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326
RQT+LFSAT + + + PV V V++ H+ + Q F S + RL
Sbjct: 177 ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD-LPAIEQRFYEVSPDE--RL-PA 232
Query: 327 LGLMLLR---ENCL 337
L +LL E+C+
Sbjct: 233 LQRLLLHHQPESCV 246
|
Length = 460 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 2e-49
Identities = 102/251 (40%), Positives = 142/251 (56%), Gaps = 11/251 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145
P E + FH NL+ L+ AI L + Y TPIQA + L G D G A TGTGKTAAF
Sbjct: 82 PQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAF 141
Query: 146 MLPILERLLYKPRDDQ----NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
++ I+ +LL P + R L++ PTREL VQ+ + L ++T + V VGG++
Sbjct: 142 LISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMD 201
Query: 202 VKVQESVL--RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259
Q L R C DI++ATPGRLLD + L +EV+VLDEADRMLD F Q++
Sbjct: 202 FDKQLKQLEARFC-DILVATPGRLLD-FNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVR 259
Query: 260 EIIRLCSRT--RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317
+IIR R RQT+LFSAT TD V +L T P V ++ + + + Q + +
Sbjct: 260 QIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319
Query: 318 IDEVR-LYNVL 327
D+ + LYN++
Sbjct: 320 SDKYKLLYNLV 330
|
Length = 475 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 7e-49
Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 7/185 (3%)
Query: 114 PTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172
P Q I L G RD+ A TG+GKT A +LP LE L RVLVLVPTR
Sbjct: 9 LRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GGRVLVLVPTR 64
Query: 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK-CPDIVIATPGRLLDHLHNTP 231
EL Q + ++L ++V GG + Q L DI++ TPGRLLD L N
Sbjct: 65 ELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDK 124
Query: 232 SFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLT 291
SLS++++++LDEA R+LD F Q++++++L + Q +L SAT + + +L+ + L
Sbjct: 125 -LSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183
Query: 292 RPVRV 296
PV +
Sbjct: 184 DPVFI 188
|
Length = 201 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 9e-47
Identities = 90/247 (36%), Positives = 135/247 (54%), Gaps = 7/247 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILE 151
SF + LS +L+A+ Y PTPIQ IP L GRD+ A TGTGKTA F LP+L+
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 152 RLLYK---PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
L+ + + + R L+L PTREL Q+ + R +++ ++ + GG+ + Q
Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
LR D+++ATPGRLLD H + L +E+LVLDEADRMLD F ++ ++
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328
RQ +LFSAT +D + L L P+ + V + + + Q V F +D+ R +L
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQ-HVHF--VDKKRKRELLS 237
Query: 329 LMLLREN 335
M+ + N
Sbjct: 238 QMIGKGN 244
|
Length = 456 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-44
Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 7/237 (2%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILER 152
F L +++A+ + TPIQA +P+ L GRD+ G A TGTGKT AF+
Sbjct: 10 FSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHY 69
Query: 153 LLYKP----RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
LL P R R L++ PTREL VQ++ LAQ T +++ L+ GG Q V
Sbjct: 70 LLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 129
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC--S 266
L DI+I T GRL+D+ +L I+V+VLDEADRM D F ++ + R +
Sbjct: 130 LESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 188
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323
R MLFSAT++ V +L + P V V+ + +++E SN +++RL
Sbjct: 189 NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245
|
Length = 423 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 3e-44
Identities = 91/247 (36%), Positives = 142/247 (57%), Gaps = 8/247 (3%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
+ +F +L LL + + + TPIQA T+PVAL G D+ G A TGTGKT AF++ +
Sbjct: 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAV 67
Query: 150 LERLLYKP----RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205
+ RLL +P R ++ R L+L PTREL +Q+++ + + AL GG++ Q
Sbjct: 68 MNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127
Query: 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII-RL 264
+L++ D++IATPGRL+D++ SL E+ VLDEADRM D F ++ ++ R+
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187
Query: 265 CSR-TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323
R TRQT+LFSAT++ V +L + P ++ V+ A +RQ + DE +
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRI--YFPADEEKQ 245
Query: 324 YNVLGLM 330
+LGL+
Sbjct: 246 TLLLGLL 252
|
Length = 572 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 1e-41
Identities = 92/218 (42%), Positives = 117/218 (53%), Gaps = 13/218 (5%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFML 147
E ++F + L P+L+A+ L Y P+PIQA IP L GRD+ G A TG+GKTAAF L
Sbjct: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA-QFTSVEVALSVGGLEVKVQE 206
P+L L + + Q +LVL PTREL VQV + + V V GG VQ
Sbjct: 63 PLLHNLDPELKAPQ---ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
LR+ P IV+ TPGRLLDHL + LS + LVLDEAD ML F ++ I+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHL-KRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEV 304
QT LFSATM +A+ R R F+ EV
Sbjct: 179 EGHQTALFSATMPEAIR--------RITRRFMKEPQEV 208
|
Length = 629 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 6e-41
Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 6/150 (4%)
Query: 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188
RD+ A TG+GKT A +LPILE L + +VLVL PTREL QV + ++L
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELL----DSLKGGQVLVLAPTRELANQVAERLKELFGE 56
Query: 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248
++V +GG +K QE +L DIV+ TPGRLLD L SL +++L+LDEA R
Sbjct: 57 -GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER-LKLSLKKLDLLILDEAHR 114
Query: 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATM 278
+L++ F +I+ + RQ +L SAT
Sbjct: 115 LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-38
Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 14/224 (6%)
Query: 82 EDAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
E+ P PV SF + +LK++ + PTPIQ P+AL GRD+ G A TG+G
Sbjct: 123 ENVPKPVV---SFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSG 179
Query: 141 KTAAFMLP----ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS 196
KT AF+LP I + L + D VLVL PTREL Q+ + + + + ++
Sbjct: 180 KTLAFLLPAIVHINAQPLLRYGD--GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVA 237
Query: 197 VGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
GG+ + Q LR+ +I+IA PGRL+D L + + +L + LVLDEADRMLD F
Sbjct: 238 YGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVT-NLRRVTYLVLDEADRMLDMGFEP 296
Query: 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFV 298
Q+++I+ RQT+++SAT V L + L + PV V V
Sbjct: 297 QIRKIVSQIRPDRQTLMWSATWPKEVQSL-ARDLCKEEPVHVNV 339
|
Length = 545 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-36
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 18/218 (8%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILE 151
SF L LL + Y +PTPIQ IP AL GR + A TG+GKTA+F++PI+
Sbjct: 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIIS 181
Query: 152 RL----LYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
R P + +N +VL PTREL VQV + L + + AL VGG + Q
Sbjct: 182 RCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY 241
Query: 208 VLRKCPDIVIATPGRLLDHL--HNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
+++ ++++ TPGRL+D L H+ L ++ VLVLDE D ML+ F Q+ +I +
Sbjct: 242 RIQQGVELIVGTPGRLIDLLSKHD---IELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL 298
Query: 266 SRTRQTMLFSATMTDAV--------NDLVSVSLTRPVR 295
S Q +LFSAT++ V D++ +S+ P R
Sbjct: 299 S-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR 335
|
Length = 518 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-33
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 4/222 (1%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILE 151
SF + L+ LL+ I + + P+ IQ I L G D G A +GTGKTA F++ L+
Sbjct: 29 SFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQ 88
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
+ Y + L+L PTREL Q+ +V L + V VGG V+ + L+
Sbjct: 89 LIDYDLN---ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA 145
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
+V+ TPGR+ D + + + D+++ +LDEAD ML F Q+ ++ + Q
Sbjct: 146 GVHMVVGTPGRVYDMI-DKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQV 204
Query: 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
LFSATM + + +L + + P R+ V + +RQ +V
Sbjct: 205 ALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYV 246
|
Length = 401 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 43/243 (17%)
Query: 59 KEGKLKQVEAEEYEENEGGKEFFEDAPPV--EENSSFHQMNLSRPLLKA-IGALNYIYPT 115
E + + E +E ++ +A P E +L L+KA I L Y +
Sbjct: 18 TEYLEDEFKDAEGQEGSILRDPEIEARPGKTSEFPELRDESLKSALVKAGIERL-YSH-- 74
Query: 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175
Q + + GR++ TG+GKT +F+LPIL+ LL P R L+L PT L
Sbjct: 75 --QVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA----RALLLYPTNALA 128
Query: 176 VQVYQVTRQLAQFTS-----VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHL--- 227
Q R L + S V G + + +++R PDI++ P +L +L
Sbjct: 129 ND--QAER-LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP-DMLHYLLLR 184
Query: 228 -HNTPSFSLSDIEVLVLDEADRMLDEH-----FASQM-------KEIIRLCSRTRQTMLF 274
H+ + L +++ LV+DE H S++ +R Q +
Sbjct: 185 NHDAWLWLLRNLKYLVVDEL------HTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICT 238
Query: 275 SAT 277
SAT
Sbjct: 239 SAT 241
|
Length = 851 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175
P Q A L ++ A TG+GKT +L IL LL + +V+ +VP + L
Sbjct: 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL-----EGGGKVVYIVPLKALA 89
Query: 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSL 235
+ Y+ +L + + V +S G ++ + L + D+++ TP +L PS+ +
Sbjct: 90 EEKYEEFSRLEEL-GIRVGISTGDYDLDDER--LARY-DVIVTTPEKLDSLTRKRPSW-I 144
Query: 236 SDIEVLVLDEADRMLDEH 253
+++++V+DE + D
Sbjct: 145 EEVDLVVIDEIHLLGDRT 162
|
Length = 766 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 11/188 (5%)
Query: 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP 157
L + + + TP Q IP G ++ A TG+GKT A LP++ LL
Sbjct: 8 LDPRVREWF-KRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG 66
Query: 158 RDDQNTRVLVL--VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDI 215
+ + L P + L + + + + +EVA+ G ++ +L+ P I
Sbjct: 67 KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHI 126
Query: 216 VIATPGRLLDHLHNTPSFS--LSDIEVLVLDEADRMLDE----HFASQMKEIIRLCSRTR 269
+I TP L L N+P F L D+ +++DE + + A ++ + L
Sbjct: 127 LITTPESLAILL-NSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDF- 184
Query: 270 QTMLFSAT 277
Q + SAT
Sbjct: 185 QRIGLSAT 192
|
Length = 814 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 23/193 (11%)
Query: 102 LLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQ 161
++ A+ A P QA +A GR + T +GK+ A+ LP+L L PR
Sbjct: 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPR--- 81
Query: 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPG 221
L L PT+ L + R+L V A G + + R+ V+ P
Sbjct: 82 -ATALYLAPTKALAADQLRAVRELTL-RGVRPATYDGDTPTEERRWA-REHARYVLTNP- 137
Query: 222 RLLDHLHNT--PSFS-----LSDIEVLVLDEADR---MLDEHFASQMKEIIRLCSRTRQT 271
D LH PS + L + +V+DE + H A ++ + RLC+R +
Sbjct: 138 ---DMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGAS 194
Query: 272 ---MLFSATMTDA 281
+L SAT D
Sbjct: 195 PVFVLASATTADP 207
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 135 AATGTGKTAAFMLPILERLLYK-------PRDDQNTRVLVLVPTRELGVQVYQ------- 180
A TG+GKT A L L+RL + + +R+L + P + LG V +
Sbjct: 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62
Query: 181 ---VTRQLAQFTSVE--VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSL 235
R+ T V V + G + + + R PDI+I TP L L + +L
Sbjct: 63 GIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETL 122
Query: 236 SDIEVLVLDE----ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLT 291
+E +++DE A H A ++ + L + Q + SAT+ A + +
Sbjct: 123 RGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGD 182
Query: 292 RPVRV 296
RPV V
Sbjct: 183 RPVTV 187
|
Length = 1490 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 108 ALNYIYPTPIQA----ATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT 163
A I P I+ I L ++ TG GKT + I RL +
Sbjct: 5 AHPLIKPNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGG----- 59
Query: 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGR 222
+VL L PT+ L +Q + R++ E+A G EV+ +E + +ATP
Sbjct: 60 KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG--EVRPEEREELWAKKKVFVATPQV 117
Query: 223 LLDHLHNTPSFSLSDIEVLVLDEADR 248
+ + L L D+ +L+ DEA R
Sbjct: 118 VENDL-KAGRIDLDDVSLLIFDEAHR 142
|
Length = 542 |
| >gnl|CDD|219205 pfam06862, DUF1253, Protein of unknown function (DUF1253) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 56/158 (35%)
Query: 214 DIVIATP-----------GRLLDHLHNTPSFSLSDIEVLVLDEADRMLD---EHFASQMK 259
DI+IA+P + D+ F LS IEVL++D+AD +L EH + K
Sbjct: 128 DIIIASPLGLRMIIENEDKKKRDY-----DF-LSSIEVLIVDQADVILMQNWEHVLTVFK 181
Query: 260 EIIRL--------CSRT------------RQTMLFSATMTDAVNDLVS---------VSL 290
+ ++ SR RQT+LFS+ +T +N L + V L
Sbjct: 182 HLNKIPKKSHGADFSRVRMWYLDGQAKYYRQTILFSSYITPEINSLFNSKCVNYRGKVKL 241
Query: 291 TRPVRVFVDNNHEVALNLRQEFVSFS-----NIDEVRL 323
+ V V L +RQ F F + + R
Sbjct: 242 KPIYKSGVIGQ--VGLKVRQVFQRFDASSIVDDPDARF 277
|
This family represents the C-terminal portion (approximately 500 residues) of several hypothetical eukaryotic proteins of unknown function. Length = 436 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193
TG GKTA +L I ERL K +VL+L PT+ L Q + R+ ++
Sbjct: 35 VLPTGLGKTAIALLVIAERLHKK-----GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKI 89
Query: 194 ALSVGGLEVKVQESVLRKCPDIVIATP---------GRLLDHLHNTPSFSLSDIEVLVLD 244
+ G + + + + K +++ATP GR+ SL D+ +L+ D
Sbjct: 90 VVFTGEVSPEKRAELWEKA-KVIVATPQVIENDLIAGRI----------SLEDVSLLIFD 138
Query: 245 EADR 248
EA R
Sbjct: 139 EAHR 142
|
Length = 773 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
R TG GKT I E LVLVPT+EL + Q L +
Sbjct: 55 ERRGVIVLPTGAGKTVVAAEAIAEL---------KRSTLVLVPTKEL---LDQWAEALKK 102
Query: 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIAT----PGRLLDHLHNTPSFSLSDIEVLVL 243
F + + + G K + + +AT R L F L ++
Sbjct: 103 FLLLNDEIGIYGGGEK-----ELEPAKVTVATVQTLARRQLLDEFLGNEFGL-----IIF 152
Query: 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
DE + + + I+ L S + +AT
Sbjct: 153 DEVHHLPAPSY----RRILELLSAAYPRLGLTAT 182
|
Length = 442 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 25/146 (17%)
Query: 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173
P P Q AL GR A TG+GKT A LP L L + + L + P R
Sbjct: 14 PRPFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRA 73
Query: 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKV-----------QESVLRKCPDIVIATPGR 222
L V + + +++ + GL ++V + +K PDI++ TP
Sbjct: 74 LAVDIAR---------NLQAPIEELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPES 124
Query: 223 L---LDHLHNTPSFSLSDIEVLVLDE 245
L L + F D+ +V+DE
Sbjct: 125 LALLLSYPDAARLF--KDLRCVVVDE 148
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 43/213 (20%)
Query: 115 TPIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173
P+Q + LL G ++ +AT +GKT L + RLL ++L LVP
Sbjct: 218 LPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL-----SGGKKMLFLVPLVA 272
Query: 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIAT-PGRLLDHLH 228
L Q Y+ ++ ++VA+ VG +K +E + DI++ T G +D+L
Sbjct: 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEG--IDYLL 330
Query: 229 NTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR------QTMLFSATMTDAV 282
T L DI +V+DE + DE ++ +I R R Q + SAT
Sbjct: 331 RTGKD-LGDIGTVVIDEIHTLEDEERGPRLDGLI---GRLRYLFPGAQFIYLSAT----- 381
Query: 283 NDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315
V N E+A L + V +
Sbjct: 382 ---------------VGNPEELAKKLGAKLVLY 399
|
Length = 830 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0339|consensus | 731 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0340|consensus | 442 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| KOG0329|consensus | 387 | 100.0 | ||
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 100.0 | |
| KOG4284|consensus | 980 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0344|consensus | 593 | 99.97 | ||
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.96 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.96 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.96 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.96 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.95 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.95 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.95 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.95 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.94 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.94 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.94 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.94 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.94 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.93 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.92 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.92 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.91 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.91 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.91 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.91 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.9 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.9 | |
| KOG0349|consensus | 725 | 99.9 | ||
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.9 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.9 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.89 | |
| KOG0952|consensus | 1230 | 99.86 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.86 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.86 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.86 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.86 | |
| KOG0354|consensus | 746 | 99.85 | ||
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.85 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.83 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.82 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.81 | |
| KOG0947|consensus | 1248 | 99.8 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.8 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.79 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.77 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.77 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.76 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.76 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.76 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.75 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| KOG0951|consensus | 1674 | 99.73 | ||
| KOG0352|consensus | 641 | 99.72 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.71 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.71 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.69 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.68 | |
| KOG0926|consensus | 1172 | 99.68 | ||
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.67 | |
| KOG0351|consensus | 941 | 99.65 | ||
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.64 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.62 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.62 | |
| KOG0353|consensus | 695 | 99.61 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.6 | |
| KOG0948|consensus | 1041 | 99.6 | ||
| KOG0920|consensus | 924 | 99.59 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.59 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.58 | |
| KOG0922|consensus | 674 | 99.57 | ||
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.56 | |
| KOG0925|consensus | 699 | 99.55 | ||
| KOG2340|consensus | 698 | 99.52 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.51 | |
| KOG0923|consensus | 902 | 99.48 | ||
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.47 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.43 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.42 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.41 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.4 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.4 | |
| KOG0924|consensus | 1042 | 99.38 | ||
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.36 | |
| KOG0950|consensus | 1008 | 99.36 | ||
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.35 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.31 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 99.3 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 99.3 | |
| KOG0949|consensus | 1330 | 99.3 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.26 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.22 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.19 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 99.19 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.13 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.08 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.08 | |
| KOG0951|consensus | 1674 | 99.07 | ||
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.06 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.04 | |
| KOG0385|consensus | 971 | 99.02 | ||
| KOG0387|consensus | 923 | 99.01 | ||
| KOG0391|consensus | 1958 | 98.9 | ||
| KOG1123|consensus | 776 | 98.87 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.87 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.87 | |
| KOG1002|consensus | 791 | 98.82 | ||
| KOG0389|consensus | 941 | 98.73 | ||
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.72 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.7 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.69 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.64 | |
| KOG0390|consensus | 776 | 98.59 | ||
| KOG0392|consensus | 1549 | 98.56 | ||
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.55 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.55 | |
| KOG4439|consensus | 901 | 98.5 | ||
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.48 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 98.48 | |
| KOG0384|consensus | 1373 | 98.47 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.44 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.43 | |
| KOG1000|consensus | 689 | 98.4 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 98.37 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.34 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.28 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 98.26 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 98.23 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.21 | |
| KOG1802|consensus | 935 | 98.19 | ||
| KOG0388|consensus | 1185 | 98.18 | ||
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 98.18 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.16 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 98.16 | |
| KOG1803|consensus | 649 | 98.09 | ||
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.05 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 98.03 | |
| KOG0952|consensus | 1230 | 97.95 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.94 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.93 | |
| PRK08181 | 269 | transposase; Validated | 97.92 | |
| KOG0921|consensus | 1282 | 97.89 | ||
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 97.88 | |
| KOG0386|consensus | 1157 | 97.87 | ||
| KOG4150|consensus | 1034 | 97.86 | ||
| PRK06526 | 254 | transposase; Provisional | 97.85 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.83 | |
| KOG1015|consensus | 1567 | 97.79 | ||
| KOG0989|consensus | 346 | 97.78 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.77 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.71 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 97.7 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.69 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.69 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.69 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.68 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.68 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.67 | |
| KOG1132|consensus | 945 | 97.66 | ||
| KOG1805|consensus | 1100 | 97.63 | ||
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.6 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.59 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.52 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.48 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.46 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.45 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 97.38 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.38 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.37 | |
| PRK08116 | 268 | hypothetical protein; Validated | 97.37 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 97.35 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 97.33 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 97.32 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 97.31 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.29 | |
| PRK12377 | 248 | putative replication protein; Provisional | 97.25 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 97.25 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 97.25 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 97.2 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 97.2 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 97.17 | |
| PRK08727 | 233 | hypothetical protein; Validated | 97.16 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 97.16 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 97.15 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 97.14 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.14 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 97.14 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 97.13 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 97.1 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 97.09 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 97.08 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 97.08 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 97.08 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.06 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 97.03 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 97.03 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 97.02 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.02 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 97.0 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.0 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.99 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.97 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 96.97 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.96 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 96.95 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 96.94 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 96.91 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 96.9 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 96.89 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 96.89 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 96.88 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 96.87 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 96.87 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 96.86 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 96.86 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.85 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.83 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.82 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.82 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 96.8 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 96.79 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.79 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 96.78 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 96.78 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 96.77 | |
| PF05729 | 166 | NACHT: NACHT domain | 96.75 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 96.75 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 96.75 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.74 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 96.73 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 96.72 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 96.71 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 96.7 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 96.69 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 96.69 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 96.66 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.64 | |
| KOG1001|consensus | 674 | 96.64 | ||
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 96.63 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.63 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 96.63 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.63 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.62 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 96.61 | |
| KOG0953|consensus | 700 | 96.61 | ||
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 96.61 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.6 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 96.6 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 96.59 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 96.57 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 96.56 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 96.56 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 96.56 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 96.53 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.53 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 96.52 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 96.52 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 96.5 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 96.49 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 96.48 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 96.48 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 96.47 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 96.46 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 96.46 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 96.45 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 96.45 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.45 | |
| KOG0733|consensus | 802 | 96.44 | ||
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 96.42 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 96.37 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.37 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 96.37 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 96.37 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.36 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 96.33 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 96.31 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 96.31 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 96.31 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 96.3 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.28 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 96.27 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.26 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 96.25 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 96.23 | |
| KOG0298|consensus | 1394 | 96.2 | ||
| KOG1016|consensus | 1387 | 96.18 | ||
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 96.16 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 96.15 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 96.15 | |
| KOG0991|consensus | 333 | 96.13 | ||
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 96.13 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 96.12 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 96.1 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 96.1 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 96.07 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 96.07 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 96.07 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 96.06 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.05 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 95.98 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 95.97 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 95.96 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 95.95 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 95.92 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 95.91 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 95.88 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 95.87 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 95.87 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.8 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 95.79 | |
| KOG0737|consensus | 386 | 95.75 | ||
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.71 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 95.65 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 95.63 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 95.63 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.63 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 95.55 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 95.54 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 95.5 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 95.47 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 95.45 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 95.43 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 95.41 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 95.38 | |
| KOG0732|consensus | 1080 | 95.37 | ||
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 95.35 | |
| KOG0344|consensus | 593 | 95.35 | ||
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 95.35 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 95.32 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 95.31 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 95.3 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 95.3 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 95.28 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 95.28 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 95.28 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 95.26 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 95.23 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 95.21 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 95.2 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 95.19 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 95.18 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 95.16 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 95.12 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 95.09 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 95.08 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 95.07 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 95.05 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 95.05 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 95.04 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 95.01 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 95.0 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 95.0 | |
| KOG0742|consensus | 630 | 94.99 | ||
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 94.97 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 94.97 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 94.96 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 94.94 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 94.81 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 94.78 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 94.76 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 94.76 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 94.75 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 94.74 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 94.73 | |
| KOG0738|consensus | 491 | 94.73 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 94.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.72 | |
| KOG0744|consensus | 423 | 94.68 | ||
| PRK10436 | 462 | hypothetical protein; Provisional | 94.68 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 94.64 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 94.61 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 94.6 | |
| KOG0741|consensus | 744 | 94.57 | ||
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 94.5 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 94.47 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 94.44 | |
| PRK09087 | 226 | hypothetical protein; Validated | 94.39 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 94.38 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 94.33 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 94.33 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 94.29 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 94.27 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 94.27 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 94.24 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 94.23 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 94.15 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 94.12 | |
| KOG2004|consensus | 906 | 94.11 | ||
| KOG0060|consensus | 659 | 94.07 | ||
| KOG2028|consensus | 554 | 94.05 | ||
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 94.04 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 93.99 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 93.99 | |
| PHA00350 | 399 | putative assembly protein | 93.97 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 93.97 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 93.97 | |
| PRK07413 | 382 | hypothetical protein; Validated | 93.93 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 93.93 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 93.81 | |
| KOG1133|consensus | 821 | 93.75 | ||
| KOG2035|consensus | 351 | 93.71 | ||
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 93.69 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 93.65 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 93.65 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 93.59 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 93.57 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 93.53 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 93.45 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 93.43 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 93.4 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 93.38 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 93.37 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 93.33 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 93.33 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 93.28 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 93.22 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 93.22 | |
| KOG0331|consensus | 519 | 93.2 | ||
| PRK07413 | 382 | hypothetical protein; Validated | 93.18 | |
| PRK13764 | 602 | ATPase; Provisional | 93.16 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 93.14 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 93.14 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 93.13 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 93.13 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 93.08 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 93.03 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 93.01 | |
| PRK13695 | 174 | putative NTPase; Provisional | 93.0 | |
| KOG1807|consensus | 1025 | 92.93 | ||
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 92.73 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 92.69 | |
| KOG0333|consensus | 673 | 92.67 | ||
| KOG0734|consensus | 752 | 92.62 | ||
| KOG0740|consensus | 428 | 92.59 | ||
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 92.57 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 92.55 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 92.46 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 92.45 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 92.44 | |
| KOG0739|consensus | 439 | 92.36 | ||
| KOG0730|consensus | 693 | 92.33 | ||
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 92.32 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 92.32 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 92.31 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 92.24 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 92.16 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 92.16 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 92.14 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 92.14 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 92.07 | |
| PRK13876 | 663 | conjugal transfer coupling protein TraG; Provision | 92.05 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 92.02 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 92.01 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 91.98 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 91.96 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 91.94 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 91.89 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 91.75 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 91.69 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 91.68 | |
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 91.67 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 91.62 | |
| KOG2543|consensus | 438 | 91.6 | ||
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 91.52 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 91.49 |
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=399.04 Aligned_cols=243 Identities=66% Similarity=1.001 Sum_probs=233.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.+|+|+..+++++..+||..|||+|..+||.++.|+|++.||.||||||.+|++|+++.++.++......|||||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||+||.|++.+.++++.|+++.+++++||.+.+.|...++.+|||+|+|||+|.+|+.+.+.|++.++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
++.+|..+|..|++.|++++|+++||||++..+..++...|++|+.|++++...++..++|.|+++....+.++-..|-.
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777666666665
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
|+.
T Consensus 420 l~~ 422 (691)
T KOG0338|consen 420 LIT 422 (691)
T ss_pred HHH
Confidence 554
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=350.56 Aligned_cols=242 Identities=44% Similarity=0.635 Sum_probs=226.7
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
....+|.++++.+.+++++...|+..||++|+++||.++.|+|+|+.|.||||||.+|++|+++.|+..+ ..++++|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---~~~~~lV 134 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---KLFFALV 134 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---CCceEEE
Confidence 4457899999999999999999999999999999999999999999999999999999999999998755 3589999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
++||||||.|+...+..++..++++++.+.||.....+...+...|+|+|||||+|++++.+.+.+++.+++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcch-hhHHHH
Q psy3143 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-VRLYNV 326 (337)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~-~~~~~~ 326 (337)
+++++.|...+..|++.++..+|+++||||+|..+..+....+++|+.|.+.....+++++.|+|+++...++ .....+
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998644 444555
Q ss_pred HHHhhh
Q psy3143 327 LGLMLL 332 (337)
Q Consensus 327 L~~ll~ 332 (337)
|+++..
T Consensus 295 l~e~~g 300 (476)
T KOG0330|consen 295 LNELAG 300 (476)
T ss_pred HHhhcC
Confidence 555443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=349.38 Aligned_cols=239 Identities=40% Similarity=0.618 Sum_probs=219.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|++++|++.+++++.++||..|||+|.++||.++.|+|+++.|+||||||++|++|+++.+.........+ +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECC
Confidence 6799999999999999999999999999999999999999999999999999999999999975321111112 999999
Q ss_pred CHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||||.|+++.+..++.+. ++++.+++||.+...+...+..+++|+|||||+|++++.+. .+.++.++++|+||||+|
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhh
Confidence 9999999999999999998 79999999999999999888888999999999999999885 889999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc--ccCCeeEEEEEecCcchhhHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE--VALNLRQEFVSFSNIDEVRLYNVL 327 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~--~~~~i~q~~~~~~~~~~~~~~~~L 327 (337)
+++||...+..|+..++..+|+++||||+|+.+..+...++++|+.|.+..... +...|.|+|+.+...+ .|+..|
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L 264 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELL 264 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999986655 7899999999999742 588888
Q ss_pred HHhhhc
Q psy3143 328 GLMLLR 333 (337)
Q Consensus 328 ~~ll~~ 333 (337)
..+|..
T Consensus 265 ~~ll~~ 270 (513)
T COG0513 265 LKLLKD 270 (513)
T ss_pred HHHHhc
Confidence 888864
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=340.24 Aligned_cols=237 Identities=39% Similarity=0.557 Sum_probs=216.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcC---CCCCCCeeEEEE
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK---PRDDQNTRVLVL 168 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~~~~lil 168 (337)
.|..++|++.+..+++..||..|||||.+.||.++.|+|++..|.||||||++|++|++.++... .....+|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999752 123458899999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||||||.|+...+..++....++..+++||.....|...++++++|+|+|||+|.+++.. +.+.|+.+.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987 488999999999999999
Q ss_pred cccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc--cccCCeeEEEEEecCcchhhHHH
Q psy3143 249 MLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH--EVALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~--~~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
|++++|.++++.|+..+ +..+|++++|||+|..+..++..|+.+|..|.+.... ...-+|.|....|+. ..|..
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~---~~K~~ 327 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE---TAKLR 327 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH---HHHHH
Confidence 99999999999999999 5566899999999999999999999999999998764 445789999999986 45555
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..+|+
T Consensus 328 ~l~~lL~ 334 (519)
T KOG0331|consen 328 KLGKLLE 334 (519)
T ss_pred HHHHHHH
Confidence 5555553
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=331.19 Aligned_cols=238 Identities=38% Similarity=0.599 Sum_probs=218.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-CCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDD-QNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~lil 168 (337)
...|++++|+.+.+++|+..+|..||.+|.++||.++.|+|++..|.||||||+||++|++++|+...+.. .|.-||||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999998776654 36779999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
.|||+||.|++.++.++++++.+..++++||.........+.. .+|+|||||+|++|+..++.++.+++.++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 9999999999999999999999999999999998876665554 699999999999999998899999999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC--ccccCCeeEEEEEecCcchhhHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~--~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|+++||...+..|+..+|..+|+++||||-+..+..+++..+++|++|-+... ..++.++.|+|+.|.-. +|+.+
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~---~Ki~~ 303 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLE---DKIDM 303 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehh---hHHHH
Confidence 99999999999999999999999999999999999999999999999998744 46778999999999985 66666
Q ss_pred HHHhh
Q psy3143 327 LGLML 331 (337)
Q Consensus 327 L~~ll 331 (337)
|-..+
T Consensus 304 L~sFI 308 (758)
T KOG0343|consen 304 LWSFI 308 (758)
T ss_pred HHHHH
Confidence 65554
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=318.25 Aligned_cols=244 Identities=36% Similarity=0.553 Sum_probs=218.5
Q ss_pred CccccCC--CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCe--eEE
Q psy3143 91 SSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT--RVL 166 (337)
Q Consensus 91 ~~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~--~~l 166 (337)
.+|++++ |++++++++..+||..+||+|..+||.++.++||++.|+||||||+||++|+++.++.+....++. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566655 569999999999999999999999999999999999999999999999999999997766655544 799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhc-cCcEEEEEeCCccHHHHHH-HHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEE
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQES-VLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVL 243 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~-~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iVi 243 (337)
||+||||||.||.+++..+... .++.+.+++||........ ..+.+++|+|||||+|.+++++. ..+++.+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988876 6888999999988776554 44577899999999999999873 3456779999999
Q ss_pred ecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc--ccCCeeEEEEEecCcchh
Q psy3143 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE--VALNLRQEFVSFSNIDEV 321 (337)
Q Consensus 244 DEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~--~~~~i~q~~~~~~~~~~~ 321 (337)
||||+++++||...+..|+..+|+.+++=+||||.+.++..++..+++||+.|.|...+. ++..+.-+|+.|.. .
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---~ 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---D 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH---H
Confidence 999999999999999999999999999999999999999999999999999999988876 78889999999998 5
Q ss_pred hHHHHHHHhhhc---CCCC
Q psy3143 322 RLYNVLGLMLLR---ENCL 337 (337)
Q Consensus 322 ~~~~~L~~ll~~---~~~~ 337 (337)
+|+..|-++|++ ++||
T Consensus 241 eK~~~lv~~L~~~~~kK~i 259 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCI 259 (567)
T ss_pred HHHHHHHHHHhccccccEE
Confidence 899999999987 5554
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=316.49 Aligned_cols=238 Identities=35% Similarity=0.512 Sum_probs=210.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC---CCCCeeEEE
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR---DDQNTRVLV 167 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~---~~~~~~~li 167 (337)
.+|++++|++++++++.+.||.+||-+|+.|||.++.|+|+++.|.||||||++|++|+++.++.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999986543 345889999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccC--cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
++||+|||.|+++++.++..++. +++.-+....+.......+...|+|+|+||++++.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999887764 4555555566666666778888999999999999999886446789999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccc-cCCeeEEEEEecCcchhhHH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEV-ALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~-~~~i~q~~~~~~~~~~~~~~ 324 (337)
||.|+..||...+..+.+.+|+.+|.++||||+++++..+-..++++|+++...+.+.. +..+.||++.|... +|+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~---DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE---DKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc---hhH
Confidence 99999999999999999999999999999999999999999999999999998776654 47799999999964 565
Q ss_pred HHHHHhh
Q psy3143 325 NVLGLML 331 (337)
Q Consensus 325 ~~L~~ll 331 (337)
.+|..||
T Consensus 256 lllyall 262 (569)
T KOG0346|consen 256 LLLYALL 262 (569)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=298.48 Aligned_cols=246 Identities=33% Similarity=0.494 Sum_probs=225.5
Q ss_pred ccCCCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC
Q psy3143 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDD 160 (337)
Q Consensus 81 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~ 160 (337)
+.........++|+++||+.++++++...||.+|+.+|+.|+++++.|+|+++.|..|+|||.+|.+.+++.+.-..
T Consensus 17 feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--- 93 (400)
T KOG0328|consen 17 FETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--- 93 (400)
T ss_pred EeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---
Confidence 34455566778999999999999999999999999999999999999999999999999999999999888763222
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
+..++||+.|||+||.|+.+++..++.+.++.+..+.||.+.....+.+..+.+++.+|||++++++.+. .+..+.+++
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkm 172 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKM 172 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeE
Confidence 3567999999999999999999999999999999999999998888888899999999999999999774 778899999
Q ss_pred EEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcch
Q psy3143 241 LVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320 (337)
Q Consensus 241 iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~ 320 (337)
+|+||||.|++.+|..++..+++++|+..|++++|||+|.++.+....|+.+|+.|.+...+.+..+|+|+|+.++.+
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~E-- 250 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKE-- 250 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred hhHHHHHHHhhh
Q psy3143 321 VRLYNVLGLMLL 332 (337)
Q Consensus 321 ~~~~~~L~~ll~ 332 (337)
+=|+..|..|+.
T Consensus 251 ewKfdtLcdLYd 262 (400)
T KOG0328|consen 251 EWKFDTLCDLYD 262 (400)
T ss_pred hhhHhHHHHHhh
Confidence 348888877763
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=313.62 Aligned_cols=240 Identities=41% Similarity=0.604 Sum_probs=216.9
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVLV 167 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~li 167 (337)
....|.++.|++..+++++.+||..+|++|..+++.++.|+|+++.|.||+|||+||++|+++.+++.... .++..+||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999765433 34678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
++|||+||.|++.+++.+.+++ ++.+.+++||.+.......+..+++|+|+|||+|++|+++.+.+.+.+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999998 999999999999998888888899999999999999999998888899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCC-CeEEEeCCCc--cccCCeeEEEEEecCcchhhH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNH--EVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-p~~i~~~~~~--~~~~~i~q~~~~~~~~~~~~~ 323 (337)
|++++.||...+..|++.++..+|+++||||.++.+.+++...++. |+.|.+.... .+...+.|-|+.+.... +
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~---~ 316 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS---R 316 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc---h
Confidence 9999999999999999999999999999999999999999976664 9999887754 45688999999998854 3
Q ss_pred HHHHHHhh
Q psy3143 324 YNVLGLML 331 (337)
Q Consensus 324 ~~~L~~ll 331 (337)
+..|-.+|
T Consensus 317 f~ll~~~L 324 (543)
T KOG0342|consen 317 FSLLYTFL 324 (543)
T ss_pred HHHHHHHH
Confidence 44444444
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=314.15 Aligned_cols=240 Identities=35% Similarity=0.502 Sum_probs=214.3
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC----CCCeeE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD----DQNTRV 165 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~ 165 (337)
..+|++++|++.++++|..+||..||++|.++||.++.|+|++++||||||||++|++|+++.++..... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999998754321 236799
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|||+||++||.|+++.+..+....++.+..++||.....+...+..+++|+||||++|++++.+ +.+.++.+++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEec
Confidence 9999999999999999999999999999999999988888888888899999999999999876 477899999999999
Q ss_pred ccccccccHHHHHHHHHHHcCC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||+|++.+|...+..+++.++. ..|.++||||++..+..+...++.+|..+.+.........+.|.++++.. ..|
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~---~~k 242 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN---EEK 242 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH---HHH
Confidence 9999999999999999998874 56789999999999999999999999999988777777788888876654 567
Q ss_pred HHHHHHhhhc
Q psy3143 324 YNVLGLMLLR 333 (337)
Q Consensus 324 ~~~L~~ll~~ 333 (337)
...|..++..
T Consensus 243 ~~~l~~ll~~ 252 (423)
T PRK04837 243 MRLLQTLIEE 252 (423)
T ss_pred HHHHHHHHHh
Confidence 7778777754
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=322.12 Aligned_cols=240 Identities=35% Similarity=0.521 Sum_probs=211.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRV 165 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~ 165 (337)
....+|.++++++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|++..+.... ....++++
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 3457899999999999999999999999999999999999999999999999999999999998886432 12347889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|||+|||+||.|+...+..++...++++.+++||.....+...+..+++|+|+||++|.+++... ...++++++|||||
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViDE 285 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVLDE 285 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEeeh
Confidence 99999999999999999999988899999999999888888888888999999999999999764 66799999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCC-CCeEEEeCCCc-cccCCeeEEEEEecCcchhhH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLT-RPVRVFVDNNH-EVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~p~~i~~~~~~-~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||+|++++|..++..|+..+++.+|+++||||+|..+..+...++. +|+.+.++... ....++.|.+..+... +|
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~---~k 362 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH---EK 362 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---hH
Confidence 9999999999999999999999999999999999999999988875 68888887654 3346789988887763 45
Q ss_pred HHHHHHhh
Q psy3143 324 YNVLGLML 331 (337)
Q Consensus 324 ~~~L~~ll 331 (337)
...|..+|
T Consensus 363 ~~~L~~ll 370 (545)
T PTZ00110 363 RGKLKMLL 370 (545)
T ss_pred HHHHHHHH
Confidence 55555555
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=304.70 Aligned_cols=241 Identities=35% Similarity=0.538 Sum_probs=223.6
Q ss_pred CCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCC
Q psy3143 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQN 162 (337)
Q Consensus 85 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~ 162 (337)
.|+...++|+.++++..|+.++++..|.+||++|.+++|.+++|++++..|.||||||.+|+.|++.++...+ ..+.+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 4566778999999999999999999999999999999999999999999999999999999999999987544 23468
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEE
Q psy3143 163 TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242 (337)
Q Consensus 163 ~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iV 242 (337)
|..||++|||+||.|++..++++++..++++++++||.+...|...++.++.|+|||||||++++.. +..++.++.|||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 478899999999
Q ss_pred EecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 243 iDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
|||||+|+++||.++++.|.....+.+|+|+||||++..+..+++.+|.+|+.+.+.........|.|.+..|.+. ..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~--~~ 453 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE--EK 453 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--HH
Confidence 9999999999999999999999999999999999999999999999999999999998888889999999988886 45
Q ss_pred HHHHHH
Q psy3143 323 LYNVLG 328 (337)
Q Consensus 323 ~~~~L~ 328 (337)
|+.-|-
T Consensus 454 Kl~wl~ 459 (731)
T KOG0339|consen 454 KLNWLL 459 (731)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=308.80 Aligned_cols=242 Identities=36% Similarity=0.540 Sum_probs=208.7
Q ss_pred CcCCccccCCCCHHHHHHHH-hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC---CCCCCe
Q psy3143 88 EENSSFHQMNLSRPLLKAIG-ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP---RDDQNT 163 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~-~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~~ 163 (337)
.....|..+||++.++..|. .+++..||.+|+++||.++.|+|++|.++||||||++|++|+++.|..-. +...|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 44568999999999999996 57999999999999999999999999999999999999999999996433 234588
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iV 242 (337)
-+|||+||||||.|+++++.++.+.. .+.-+.++||...+.....++.+++|+|+|||+|++++.++..+.++.++|||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999988765 45568889999999889999999999999999999999999999999999999
Q ss_pred EecccccccccHHHHHHHHHHHc-------------CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC--------
Q psy3143 243 LDEADRMLDEHFASQMKEIIRLC-------------SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN-------- 301 (337)
Q Consensus 243 iDEad~l~~~~~~~~~~~i~~~~-------------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~-------- 301 (337)
+||||++++.||...+..|++.+ ++..|.+++|||+++.+.++....+++|+.|-.+..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999998766 223688999999999999999999999999983321
Q ss_pred -----------------ccccCCeeEEEEEecCcchhhHHHHHHHhhh
Q psy3143 302 -----------------HEVALNLRQEFVSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 302 -----------------~~~~~~i~q~~~~~~~~~~~~~~~~L~~ll~ 332 (337)
-..+..+.|.|+.|.+. =++-.|-.+|+
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~ 417 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK---LRLVALAALLL 417 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCc---hhHHHHHHHHH
Confidence 12334678999998873 34445555554
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=313.41 Aligned_cols=239 Identities=36% Similarity=0.585 Sum_probs=214.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC---CCCeeEEEE
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD---DQNTRVLVL 168 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~lil 168 (337)
+|++++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.+...... ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998643321 234689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++||.|+.+.+..+....++.+..++|+.....+...+...++|+||||++|++++... .+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHH
Confidence 99999999999999999999999999999999988877778888999999999999988763 66799999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|++.+|...+..++..++...|+++||||+++.+..++..++.+|..+.+.........+.|+++.+.. ..+..+|.
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~ 237 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK---KRKRELLS 237 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777777889998887765 46677777
Q ss_pred HhhhcC
Q psy3143 329 LMLLRE 334 (337)
Q Consensus 329 ~ll~~~ 334 (337)
.++..+
T Consensus 238 ~l~~~~ 243 (456)
T PRK10590 238 QMIGKG 243 (456)
T ss_pred HHHHcC
Confidence 777543
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=316.77 Aligned_cols=240 Identities=33% Similarity=0.455 Sum_probs=212.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC----CCCCCe
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP----RDDQNT 163 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~~ 163 (337)
....+|.+++|++.++++|...||..||++|.++||.++.|+|++++||||||||++|++|++..++... ....++
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 4567899999999999999999999999999999999999999999999999999999999998875321 123578
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
++|||+|||+||.|+...++.+.+..++++..++||.....+...+..+++|+|+||++|.+++.+. .+.++++++|||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lVi 276 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVL 276 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEe
Confidence 9999999999999999999999988889999999998888777778888999999999999999775 677999999999
Q ss_pred ecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhH
Q psy3143 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 244 DEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||||+|++.+|...+..++..++ ..|+++||||+++.+..+...++.+|..+.++........+.|.++++... +|
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~---~k 352 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK---QK 352 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch---hH
Confidence 99999999999999999998885 679999999999999999999999999999987777677899999988764 44
Q ss_pred HHHHHHhhh
Q psy3143 324 YNVLGLMLL 332 (337)
Q Consensus 324 ~~~L~~ll~ 332 (337)
...|..+|.
T Consensus 353 ~~~l~~~l~ 361 (518)
T PLN00206 353 KQKLFDILK 361 (518)
T ss_pred HHHHHHHHH
Confidence 455555553
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=319.66 Aligned_cols=240 Identities=36% Similarity=0.556 Sum_probs=214.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC----CCCCeeEE
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR----DDQNTRVL 166 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~l 166 (337)
.+|.+++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.++.... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999864321 12257999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
||+||++||.|+++.+..++...++.+..++|+.....+...+...++|+|+||++|++++.+...+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999888888888889999999999999997765677899999999999
Q ss_pred cccccccHHHHHHHHHHHcCC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~ 324 (337)
|+|++.+|...+..+++.++. .+|+++||||++..+..+...++.+|..+.+.........+.|.++.+.. ..|.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD---EEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH---HHHH
Confidence 999999999999999998876 78999999999999999999999999988887766677788998887654 5677
Q ss_pred HHHHHhhhc
Q psy3143 325 NVLGLMLLR 333 (337)
Q Consensus 325 ~~L~~ll~~ 333 (337)
..|..+|..
T Consensus 246 ~~L~~ll~~ 254 (572)
T PRK04537 246 TLLLGLLSR 254 (572)
T ss_pred HHHHHHHhc
Confidence 777777743
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=313.09 Aligned_cols=235 Identities=39% Similarity=0.563 Sum_probs=211.9
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|..++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+... ...+++||++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~---~~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK---RFRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc---cCCceEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999998422 2356899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+||||++|.+++.+ +.+.++++++||+||||+
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHH
Confidence 99999999999999988765 7899999999999888888888999999999999999876 467799999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|++.+|...+..++..++...|+++||||+++.+..+...++.+|..+.+.... ....+.|+|+.+... +|+..|.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~---~k~~~l~ 234 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD---ERLPALQ 234 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999999986654 345699999988874 5777787
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.+|.
T Consensus 235 ~ll~ 238 (460)
T PRK11776 235 RLLL 238 (460)
T ss_pred HHHH
Confidence 7774
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=319.35 Aligned_cols=236 Identities=39% Similarity=0.578 Sum_probs=213.5
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.+++|++.++++|.++||..|+++|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---cCCCeEEEEe
Confidence 4579999999999999999999999999999999999999999999999999999999999987432 2357899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
||++||.|++..+..+.... ++.+..++||.....+...+..+++|+|+||++|.+++.+ +.+.++++++|||||||.
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHH
Confidence 99999999999999987765 7899999999998888888888899999999999999976 467799999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|+.++|...+..++..++...|+++||||+|+.+..+...|+.+|..|.+.........+.|.|+.+.. .+|...|.
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~~~L~ 237 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALV 237 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999999988777777889999988776 46666777
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.+|.
T Consensus 238 ~~L~ 241 (629)
T PRK11634 238 RFLE 241 (629)
T ss_pred HHHH
Confidence 6664
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=289.64 Aligned_cols=238 Identities=39% Similarity=0.557 Sum_probs=213.7
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+.+||++++.+.|+++|+..|||+|..|||.++.|+|++.||.||||||++|.+|+++.|...+ .+..++|+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP---~giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP---YGIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC---CcceEEEe
Confidence 356899999999999999999999999999999999999999999999999999999999999985433 47789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC---CCCCCccEEEEec
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS---FSLSDIEVLVLDE 245 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~l~~~~~iViDE 245 (337)
+|||+||.|+.+.|..+++..++++++++||+..-.+...+...|||+|+|||+|..++.+++. ..+.+++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999987633 3488999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCC--CeEEEeCCCccccCCeeEEEEEecCcchhhH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||+|+...|...+..+.+.+|..+|.++||||+++.+.++..-..++ +....+.+...++..+.|.|+.|+.. -|
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~---vk 238 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID---VK 238 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh---hh
Confidence 99999999999999999999999999999999999999988766665 45555656677889999999999873 55
Q ss_pred HHHHHHhhh
Q psy3143 324 YNVLGLMLL 332 (337)
Q Consensus 324 ~~~L~~ll~ 332 (337)
-.+|-.+|+
T Consensus 239 daYLv~~Lr 247 (442)
T KOG0340|consen 239 DAYLVHLLR 247 (442)
T ss_pred HHHHHHHHh
Confidence 566666664
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=305.74 Aligned_cols=239 Identities=40% Similarity=0.603 Sum_probs=215.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~lil~P 170 (337)
+|++++|++.++++|..+||..|+++|.++++.++.|+|++++||||+|||++|++|+++.+...+.. ..++++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999998643322 23578999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
|++||.|+++.+..++...++.+..++|+.....+...+..+++|+||||++|++++.+ ..+.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999998888888888899999999999999876 46778999999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCch-hHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTD-AVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
+++|...+..+...++...|+++||||++. .+..+...++.+|..+.+.........+.|.++.++.. ..|...|..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL--EHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH--HHHHHHHHH
Confidence 999999999999999989999999999985 57888888999999999888777778899988877653 578888988
Q ss_pred hhhc
Q psy3143 330 MLLR 333 (337)
Q Consensus 330 ll~~ 333 (337)
++..
T Consensus 239 l~~~ 242 (434)
T PRK11192 239 LLKQ 242 (434)
T ss_pred HHhc
Confidence 8864
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=291.10 Aligned_cols=242 Identities=32% Similarity=0.481 Sum_probs=212.7
Q ss_pred CCCcCCcccc-CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC---CCC
Q psy3143 86 PVEENSSFHQ-MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR---DDQ 161 (337)
Q Consensus 86 ~~~~~~~f~~-~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~---~~~ 161 (337)
.+....+|++ ++..+++++++++.||.+|||+|.+|||.+++|+|++..|.||+|||++|++|-+.++...+. ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 3444566776 678999999999999999999999999999999999999999999999999998887754432 235
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++|+++|||+||.|+.-...++. +.+.+..+++||.+...+...++.+.+|+++||++|.++... +.++++++.|+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 7899999999999999987777654 567888899999999999999999999999999999998766 48899999999
Q ss_pred EEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcccc-CCeeEEEEEecCcch
Q psy3143 242 VLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA-LNLRQEFVSFSNIDE 320 (337)
Q Consensus 242 ViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~-~~i~q~~~~~~~~~~ 320 (337)
|+||||+|++++|.+++..|+-...+.+|+++.|||+|+.+.+++..|+++|..+.++....+. .+++|.++....
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d--- 448 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTD--- 448 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEeccc---
Confidence 9999999999999999999999999999999999999999999999999999999999888765 668888854443
Q ss_pred hhHHHHHHHhhh
Q psy3143 321 VRLYNVLGLMLL 332 (337)
Q Consensus 321 ~~~~~~L~~ll~ 332 (337)
.+|+++...++.
T Consensus 449 ~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 449 SEKLEIVQFFVA 460 (629)
T ss_pred HHHHHHHHHHHH
Confidence 578877776653
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=293.65 Aligned_cols=244 Identities=34% Similarity=0.468 Sum_probs=222.4
Q ss_pred CCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC------CC
Q psy3143 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP------RD 159 (337)
Q Consensus 86 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~ 159 (337)
-+....+|++.+++..+++.+...||..|+|+|.+++|..+.++|+|..|.||||||++|++|++.++...+ ..
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 345567899999999999999999999999999999999999999999999999999999999999986555 22
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 160 DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 160 ~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
..+|.++|+.|||+||.|+.....++++..++++..++||.+...+.-.+..+|+|+|+|||+|.+.+.+. .+.++++.
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qct 398 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCT 398 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCc
Confidence 34899999999999999999999999999999999999999999988889999999999999999999884 67799999
Q ss_pred EEEEecccccccccHHHHHHHHHHHcCC-------------------------CCeEEEEeecCchhHHHHHHhhCCCCe
Q psy3143 240 VLVLDEADRMLDEHFASQMKEIIRLCSR-------------------------TRQTMLFSATMTDAVNDLVSVSLTRPV 294 (337)
Q Consensus 240 ~iViDEad~l~~~~~~~~~~~i~~~~~~-------------------------~~q~i~~SAT~~~~~~~~~~~~~~~p~ 294 (337)
+||+||||+|++++|.+.+..++.+++. -+|+++||||+|+.+..+++.||++|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999988752 169999999999999999999999999
Q ss_pred EEEeCCCccccCCeeEEEEEecCcchhhHHHHHHHhhhc
Q psy3143 295 RVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLR 333 (337)
Q Consensus 295 ~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ll~~ 333 (337)
.+.++..+...+.+.|.++.+... .|+..|.++|.+
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed---~k~kkL~eil~~ 514 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSED---EKRKKLIEILES 514 (673)
T ss_pred EEEeccCCCCccchheEEEEecch---HHHHHHHHHHHh
Confidence 999999999999999999998885 456667776644
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=285.48 Aligned_cols=236 Identities=32% Similarity=0.518 Sum_probs=217.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
...|+++.|..+++..+...||.+|+|+|..+||.++.|+|+++.|..|+|||.+|.+|+++.+... ....+++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~---~~~IQ~~ilV 160 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK---KNVIQAIILV 160 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc---ccceeEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999998422 2456799999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||+||.|+.+.++.+++.+++.+....||++.....-.+...++++|+|||++++++.. +.-.++.+.++|+||||.|
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKL 239 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhh
Confidence 999999999999999999999999999999999888878888899999999999999876 3667999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
++..|...+..++..+|+.+|++++|||+|-.+..++.++|++|..|.. ..+.++.++.|||-++.+ .+|..-|+.
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e---~qKvhCLnt 315 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEE---RQKVHCLNT 315 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeech---hhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999997 567888999999999988 577777777
Q ss_pred hhhc
Q psy3143 330 MLLR 333 (337)
Q Consensus 330 ll~~ 333 (337)
|+.+
T Consensus 316 Lfsk 319 (459)
T KOG0326|consen 316 LFSK 319 (459)
T ss_pred HHHH
Confidence 6644
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=299.20 Aligned_cols=238 Identities=34% Similarity=0.529 Sum_probs=216.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-----C--CCe
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-----D--QNT 163 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-----~--~~~ 163 (337)
..|.+-.+.+.+..++...++..|||+|+.+||.+..|+++++||+||||||.+|++|++..++..... . ..|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 388888999999999999999999999999999999999999999999999999999999999755321 1 248
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
++||++|||+||.|++...+++.....++++..+|+.....+...+.++++|+|||||+|.+++.. +.+.|.+++|+||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998876 5888999999999
Q ss_pred eccccccc-ccHHHHHHHHHHHcC----CCCeEEEEeecCchhHHHHHHhhCCC-CeEEEeCCCccccCCeeEEEEEecC
Q psy3143 244 DEADRMLD-EHFASQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 244 DEad~l~~-~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~-p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
||||+|++ ++|.+.|+.|+.... ..+|+++||||+|..+..++..|+.+ .+.+.+........+|.|.+++|..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999999 999999999998774 37899999999999999999999886 8899998889999999999999998
Q ss_pred cchhhHHHHHHHhhh
Q psy3143 318 IDEVRLYNVLGLMLL 332 (337)
Q Consensus 318 ~~~~~~~~~L~~ll~ 332 (337)
. +|...|..+|.
T Consensus 313 ~---~kr~~Lldll~ 324 (482)
T KOG0335|consen 313 M---EKRSKLLDLLN 324 (482)
T ss_pred h---hhHHHHHHHhh
Confidence 5 55556666664
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=290.07 Aligned_cols=238 Identities=38% Similarity=0.579 Sum_probs=222.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
...|..+||+..+++++.+.||+.|||+|++.+|.++.+++++..|.||||||.||++|+++.+.... ..+.|++++.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999996544 5688999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||+||.|..+..+.++++++++.++++||-+...+...+..++|||++|||+++.+.... .+.|+++.|||+||||.+
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999998766554 578999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
+.+||..++..++..++..+|+++||||+|..+..+.+..+.+|+.|+++-+......+...|.++.+ .+|...|..
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~---a~K~aaLl~ 253 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK---AEKEAALLS 253 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888999999999988 478888887
Q ss_pred hhhc
Q psy3143 330 MLLR 333 (337)
Q Consensus 330 ll~~ 333 (337)
++.+
T Consensus 254 il~~ 257 (529)
T KOG0337|consen 254 ILGG 257 (529)
T ss_pred HHhc
Confidence 7754
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=298.74 Aligned_cols=244 Identities=40% Similarity=0.588 Sum_probs=212.5
Q ss_pred CCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC----CC
Q psy3143 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD----DQ 161 (337)
Q Consensus 86 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~----~~ 161 (337)
+......|.+++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.++..... ..
T Consensus 82 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~ 161 (475)
T PRK01297 82 PQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMG 161 (475)
T ss_pred CccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccC
Confidence 34445689999999999999999999999999999999999999999999999999999999999998754322 12
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
.+++|||+||++||.|+.+.++.+.+..++.+..++||.....+...+ ...++|+|+||++|+.++..+ ...++++++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~ 240 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEV 240 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCce
Confidence 578999999999999999999999998899999999998776665554 456899999999999988664 567899999
Q ss_pred EEEecccccccccHHHHHHHHHHHcCC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 241 LVLDEADRMLDEHFASQMKEIIRLCSR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 241 iViDEad~l~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
|||||||.+++.+|...+..+++.++. ..|++++|||++.++..++..++.+|..+.+........++.|++..+..
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 319 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG- 319 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-
Confidence 999999999999999999999998854 57999999999999999999999999999988777777788888887776
Q ss_pred chhhHHHHHHHhhhc
Q psy3143 319 DEVRLYNVLGLMLLR 333 (337)
Q Consensus 319 ~~~~~~~~L~~ll~~ 333 (337)
.++...|..++..
T Consensus 320 --~~k~~~l~~ll~~ 332 (475)
T PRK01297 320 --SDKYKLLYNLVTQ 332 (475)
T ss_pred --hhHHHHHHHHHHh
Confidence 3567777777754
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=296.22 Aligned_cols=219 Identities=37% Similarity=0.551 Sum_probs=183.7
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCC--------
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPR-------- 158 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~-------- 158 (337)
.....|..|+|+..++++|..+||..||+||...+|.+..| .|++..|.||||||+||.||+++.++....
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999999 599999999999999999999996643221
Q ss_pred CCCCe--eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC--CC
Q psy3143 159 DDQNT--RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS--FS 234 (337)
Q Consensus 159 ~~~~~--~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~ 234 (337)
....+ -+||++|||+||+|+.+.+..++.++++++..++||.+...|.+.++..|+|+|+||||||.++..... -.
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 11233 499999999999999999999999999999999999999999999999999999999999999976533 25
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHc-----CCCCeEEEEeecCchhH---------------------HHHHH-
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLC-----SRTRQTMLFSATMTDAV---------------------NDLVS- 287 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-----~~~~q~i~~SAT~~~~~---------------------~~~~~- 287 (337)
+++++|+|+||||+|+..|....+..|++.+ ++.+|+++||||++-.. ..++.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 8899999999999999998777777777665 45789999999997542 22222
Q ss_pred -hhCCCCeEEEeCCCccccC
Q psy3143 288 -VSLTRPVRVFVDNNHEVAL 306 (337)
Q Consensus 288 -~~~~~p~~i~~~~~~~~~~ 306 (337)
-+..+|.+|-+.+...+..
T Consensus 418 ig~~~kpkiiD~t~q~~ta~ 437 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATAS 437 (731)
T ss_pred hCccCCCeeEecCcchhHHH
Confidence 1445678887766655443
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=311.03 Aligned_cols=244 Identities=34% Similarity=0.509 Sum_probs=220.1
Q ss_pred CCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC--CCCCee
Q psy3143 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--DDQNTR 164 (337)
Q Consensus 87 ~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 164 (337)
+....+|.+.|++..++..++++||..|++||.+|||+++.|+|||.+|.||||||++|++|++.++...+. .+.||.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 456789999999999999999999999999999999999999999999999999999999999987754432 345899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC--CCCCCCCccEEE
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT--PSFSLSDIEVLV 242 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~~~~iV 242 (337)
+||++|||+||.|++++++.+++.+++++++++||.....+...++++..|+|||||++.+++..+ +..++..+.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999988543 233567777999
Q ss_pred EecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 243 iDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
+||||+|++.+|.+++..|++.+++.+|+++||||+|..++.++...++.|+-|.+.........+.|.+..|... ..
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e--~e 598 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE--NE 598 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc--hH
Confidence 9999999999999999999999999999999999999999999999999999999998888888999999988833 46
Q ss_pred HHHHHHHhhh
Q psy3143 323 LYNVLGLMLL 332 (337)
Q Consensus 323 ~~~~L~~ll~ 332 (337)
|+..|.+||.
T Consensus 599 Kf~kL~eLl~ 608 (997)
T KOG0334|consen 599 KFLKLLELLG 608 (997)
T ss_pred HHHHHHHHHH
Confidence 6666666663
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=273.63 Aligned_cols=243 Identities=30% Similarity=0.458 Sum_probs=217.7
Q ss_pred cCCCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCC
Q psy3143 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRD 159 (337)
Q Consensus 82 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~ 159 (337)
++..|..+..+|++|+|+|++++++..|+|.+|+.+|..|+|.++.. +++|..+..|+|||.||.+.++.++. ..
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~ 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PD 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---cc
Confidence 46788999999999999999999999999999999999999999976 59999999999999999999999873 22
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 160 DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 160 ~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
...|.+++|+|||+||.|+.+++.++++++++...+.+.+..... ...+. .+|+|+|||.+.+++..-+.+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i~--eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKLT--EQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcch--hheeeCCCccHHHHHHHHHhhChhhce
Confidence 347889999999999999999999999999999988887763221 11122 289999999999999886688899999
Q ss_pred EEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 240 VLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 240 ~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
++|+||||.|++ +||.++-.+|.+.+++++|+++||||+...+..++...+++|..+.+..+.....+|+|+|+.|.+.
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch
Confidence 999999999886 5799999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhHHHHHHHhhh
Q psy3143 319 DEVRLYNVLGLMLL 332 (337)
Q Consensus 319 ~~~~~~~~L~~ll~ 332 (337)
.+|+++|..|+.
T Consensus 315 --~~K~~~l~~lyg 326 (477)
T KOG0332|consen 315 --DDKYQALVNLYG 326 (477)
T ss_pred --hhHHHHHHHHHh
Confidence 589999888764
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=282.48 Aligned_cols=237 Identities=30% Similarity=0.471 Sum_probs=209.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.++++++.++++|.+.||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+... ..++++||++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999887422 2367899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+.+.+..++...+..+..+.|+.........+..+++|+|+||++|.+++.+. .+.++++++||+||||++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHH
Confidence 9999999999999999888888888889998877777777778899999999999988763 567899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
++.+|...+..+++.++...|++++|||+++.+..+...++.+|..+.+........++.++++.+... ..+...|..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE--EWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877777778899988877653 345555555
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
++.
T Consensus 261 ~~~ 263 (401)
T PTZ00424 261 LYE 263 (401)
T ss_pred HHH
Confidence 553
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=282.29 Aligned_cols=240 Identities=35% Similarity=0.530 Sum_probs=211.1
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC-----CCCCC
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP-----RDDQN 162 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~ 162 (337)
....+|.++..+..+++.|++.|+..|||+|.+.+|.+++|||.|..|-||||||++|.+|++...+... ..+.+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 3457899999999999999999999999999999999999999999999999999999999987765322 22348
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHHhhc------cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 163 TRVLVLVPTRELGVQVYQVTRQLAQF------TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 163 ~~~lil~Pt~~La~q~~~~~~~l~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
|-.|||||+|+||.|.+..+..+... ..++..+++||.....+....+.+++|+|+|||+|.+++.. +.++|.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 89999999999999999988887653 34778999999999999999999999999999999999977 477889
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
-++|+++||||+|+++||...++.|+..+...+|+++||||+|..+..+++..+-.|++|+++.-.....++.|.+-++.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988777777777666555
Q ss_pred CcchhhHHHHHHHhh
Q psy3143 317 NIDEVRLYNVLGLML 331 (337)
Q Consensus 317 ~~~~~~~~~~L~~ll 331 (337)
. +-|+-.|.+-|
T Consensus 406 q---EaKiVylLeCL 417 (610)
T KOG0341|consen 406 Q---EAKIVYLLECL 417 (610)
T ss_pred h---hhhhhhHHHHh
Confidence 5 34444444433
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=270.69 Aligned_cols=236 Identities=34% Similarity=0.532 Sum_probs=215.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.+++|++.+++.+++.||.+|+.+|+.||..+..|+|+++.+.+|+|||.+|.+++++.+-. ......+|+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---~~ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---SVKETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc---chHHHHHHHhc
Confidence 358999999999999999999999999999999999999999999999999999999999998722 12356799999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH-HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV-LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
|||+||.|+.++...++...+..+..+.||.+....... ....++|+|+|||++..++... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 999999999999999999999999999999988855544 4456899999999999998764 67778899999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|+..+|..++..|++.++...|++++|||+|.++..+.+.|+++|+.|.+...+.+...|+|+|+.+... .|+..|-
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~---~k~~~l~ 257 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE---EKLDTLC 257 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc---ccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885 4887777
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.+++
T Consensus 258 dl~~ 261 (397)
T KOG0327|consen 258 DLYR 261 (397)
T ss_pred HHHH
Confidence 7765
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=256.97 Aligned_cols=239 Identities=34% Similarity=0.586 Sum_probs=214.9
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..+.|.++-|.|++++++..+||.+|+.+|..+||.+..|.|++..|.+|.|||.+|++..++.+- + ......+|++
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie--p-v~g~vsvlvm 116 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--P-VDGQVSVLVM 116 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC--C-CCCeEEEEEE
Confidence 345699999999999999999999999999999999999999999999999999999999999883 2 2235679999
Q ss_pred cCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
|.||+||.|+.+....++++. ++++..++||.+.+.....+.+.|+|+|+|||+++.+.++ +.+++++++++|+||||
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECD 195 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHH
Confidence 999999999999999999886 7899999999999998999999999999999999998877 58899999999999999
Q ss_pred ccccc-cHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc-ccCCeeEEEEEecCcchhhHHH
Q psy3143 248 RMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE-VALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 248 ~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~-~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
.|+.+ ..+..+..|.+..|+..|+++||||++.+++..+++||.+|..|+++.+.. +.-++.|+|+.+..+.+..|+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 98875 588899999999999999999999999999999999999999999988754 4567999999999887766665
Q ss_pred HHHHhh
Q psy3143 326 VLGLML 331 (337)
Q Consensus 326 ~L~~ll 331 (337)
-|...|
T Consensus 276 dLLd~L 281 (387)
T KOG0329|consen 276 DLLDVL 281 (387)
T ss_pred hhhhhh
Confidence 555544
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=245.86 Aligned_cols=203 Identities=49% Similarity=0.766 Sum_probs=184.3
Q ss_pred cccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 93 f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++++|||+|||++|++|+++.+.... ...+++++|++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCH
Confidence 78899999999999999999999999999999999999999999999999999999999986542 12478999999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
+|+.|+...++.+....++.+..+.|+.........+..+++|+||||+.|.+++.+. ...+.+++++|+||||.+.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhcc
Confidence 9999999999999887889999999998877766667667899999999999988765 467899999999999999988
Q ss_pred cHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEE
Q psy3143 253 HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVF 297 (337)
Q Consensus 253 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~ 297 (337)
++...+..+...++..+|++++|||+++.+..++..++.+|..|.
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 203 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEeC
Confidence 899999999999999999999999999999999999999998763
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=276.55 Aligned_cols=240 Identities=29% Similarity=0.432 Sum_probs=213.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
....|+++-|...++..|++.+|..||++|..|||+++.+-|+||.|..|+|||++|.+.+++.+..+ ...+.++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---~~~~q~~Iv 99 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---SSHIQKVIV 99 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---cCcceeEEE
Confidence 34679999999999999999999999999999999999999999999999999999999888887432 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhh-ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+|||++|.|+..++..++. +.++++..++||+........++. ++|+|||||++..++.. +.++.++++++|+||||
T Consensus 100 ~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 100 TPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEAD 177 (980)
T ss_pred ecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHh-cCCCccceeEEEeccHH
Confidence 9999999999999999986 569999999999998877666655 58999999999999877 48899999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcch-----h
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-----V 321 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~-----~ 321 (337)
.|++ ..|...+..|+..+|..+|++.||||.|..+.++...||++|..|..........+|+||++.+.+-.. .
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHH
Confidence 9988 569999999999999999999999999999999999999999999999888889999999987765311 3
Q ss_pred hHHHHHHHhhhc
Q psy3143 322 RLYNVLGLMLLR 333 (337)
Q Consensus 322 ~~~~~L~~ll~~ 333 (337)
.|+..|-+++.+
T Consensus 258 lklq~L~~vf~~ 269 (980)
T KOG4284|consen 258 LKLQKLTHVFKS 269 (980)
T ss_pred HHHHHHHHHHhh
Confidence 367777777643
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=264.91 Aligned_cols=226 Identities=34% Similarity=0.528 Sum_probs=187.4
Q ss_pred CccccCCCCHH----------HHHHHHhCCCCCChHHHHHHHHHHh---------CCCCEEEEcCCCCchhHHhHHHHHH
Q psy3143 91 SSFHQMNLSRP----------LLKAIGALNYIYPTPIQAATIPVAL---------LGRDICGCAATGTGKTAAFMLPILE 151 (337)
Q Consensus 91 ~~f~~~~l~~~----------l~~~l~~~~~~~p~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~l~ 151 (337)
..|+.++++.. +..++.++++.+.+|+|..++|+++ .++|++|.||||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 34666665544 4455999999999999999999985 3579999999999999999999999
Q ss_pred HhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcC-C----CEEEECcHHHHHH
Q psy3143 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC-P----DIVIATPGRLLDH 226 (337)
Q Consensus 152 ~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~----~Ilv~Tp~~l~~~ 226 (337)
.+..++ ....|||||+||++|+.|++++|..+...+++.|+...|..+.......+.+. + ||+|+|||||.+|
T Consensus 207 ~L~~R~--v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 207 LLSSRP--VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred HHccCC--ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHh
Confidence 985443 45689999999999999999999999999999999999988887766655533 3 8999999999999
Q ss_pred HhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC----------------------------------CCCeEE
Q psy3143 227 LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS----------------------------------RTRQTM 272 (337)
Q Consensus 227 l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~----------------------------------~~~q~i 272 (337)
+.+.+.++|++++|+||||||+|+++.|..++..++..+. +..+.+
T Consensus 285 l~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL 364 (620)
T KOG0350|consen 285 LNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKL 364 (620)
T ss_pred ccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhh
Confidence 9998999999999999999999999887777665443221 223578
Q ss_pred EEeecCchhHHHHHHhhCCCCeEEEeCC----CccccCCeeEEEEEecCc
Q psy3143 273 LFSATMTDAVNDLVSVSLTRPVRVFVDN----NHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 273 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~----~~~~~~~i~q~~~~~~~~ 318 (337)
++|||++.+...+...-+..|..+.+.. +-..+..+.++++.++..
T Consensus 365 ~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~ 414 (620)
T KOG0350|consen 365 VFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK 414 (620)
T ss_pred hcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc
Confidence 9999999999999999999998777763 445567788888877763
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=261.23 Aligned_cols=193 Identities=23% Similarity=0.268 Sum_probs=156.1
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.+++.+.++|.++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... .+.++|||+|||+||.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 388999999999999999999999999999999999999999999999999999998642 3678999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCC---CCCCCCccEEEEeccccccccc
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP---SFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~~~~iViDEad~l~~~~ 253 (337)
|+...++.+. ..++++..+.|+..... ...+...++|+|+||++|...+.... ...++++++|||||||.|.+ .
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~ 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-V 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-c
Confidence 9999999987 45788888888877543 45566678999999999975443211 11278999999999999865 3
Q ss_pred HHHHHHHH-------HHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEE
Q psy3143 254 FASQMKEI-------IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVF 297 (337)
Q Consensus 254 ~~~~~~~i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~ 297 (337)
|...+..+ ....+...|++++|||+++... ++..++..|..+.
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i 222 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV 222 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE
Confidence 44443333 3334567899999999998765 5667777886653
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=240.11 Aligned_cols=243 Identities=32% Similarity=0.417 Sum_probs=202.9
Q ss_pred CCcccc----CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC--CCCCe
Q psy3143 90 NSSFHQ----MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--DDQNT 163 (337)
Q Consensus 90 ~~~f~~----~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~ 163 (337)
..+|.+ +.....+++++...+|..|+++|++|+|.++.+++++.|||||||||++|.+|++..+..... ...+.
T Consensus 131 l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl 210 (593)
T KOG0344|consen 131 LLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGL 210 (593)
T ss_pred cccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccce
Confidence 345665 678999999999999999999999999999999999999999999999999999999864432 23478
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHh--hccCcEEEEEeCCccHHH-HHHHHhcCCCEEEECcHHHHHHHhcC-CCCCCCCcc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLA--QFTSVEVALSVGGLEVKV-QESVLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIE 239 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~--~~~~~~v~~~~~~~~~~~-~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~ 239 (337)
+++|+.|||+||.|++..+.++. ..+++++..+........ ........++|+|+||-++..++... ..++++.+.
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~ 290 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVE 290 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheee
Confidence 99999999999999999999998 666666655544321111 11112233589999999999998764 236799999
Q ss_pred EEEEecccccccc-cHHHHHHHHHHHcCC-CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecC
Q psy3143 240 VLVLDEADRMLDE-HFASQMKEIIRLCSR-TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 240 ~iViDEad~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
++|+||||+++.. .|..++..|+..+.. ...+-+||||++..+++++...+.+++.|.++..+.....|.|.++.|.+
T Consensus 291 ~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gs 370 (593)
T KOG0344|consen 291 WLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGS 370 (593)
T ss_pred eEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeec
Confidence 9999999999999 899999999998854 45666899999999999999999999999999999999999999999988
Q ss_pred cchhhHHHHHHHhhhcC
Q psy3143 318 IDEVRLYNVLGLMLLRE 334 (337)
Q Consensus 318 ~~~~~~~~~L~~ll~~~ 334 (337)
. .-|+-.++.++..|
T Consensus 371 e--~~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 371 E--KGKLLALRQLVASG 385 (593)
T ss_pred c--hhHHHHHHHHHhcc
Confidence 6 57777788887665
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=205.32 Aligned_cols=165 Identities=37% Similarity=0.593 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
|++|.++++.+..|+++++.||||+|||++|.+|++..+... ...+++|++|+++|+.|+...+..+....++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----CCceEEEEeecccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999988633 2348999999999999999999999888888999
Q ss_pred EEeCCccHH-HHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC--CCCeE
Q psy3143 195 LSVGGLEVK-VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS--RTRQT 271 (337)
Q Consensus 195 ~~~~~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~--~~~q~ 271 (337)
.++++.... .....+..+++|+|+||++|.+++... ...+.++++||+||+|.+....+...+..+...+. .+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG-KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT-SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhcccccc-ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999988755 444555567899999999999999874 33677799999999999988888888888888773 35899
Q ss_pred EEEeecCchhHHH
Q psy3143 272 MLFSATMTDAVND 284 (337)
Q Consensus 272 i~~SAT~~~~~~~ 284 (337)
+++|||++..++.
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999977665
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=243.37 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=159.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.++++++.+.+.+.+.|+..|+++|.++++. +..|+|+++++|||||||++|.+|+++.++. .++++|||+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----~~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----EGGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----cCCeEEEEeC
Confidence 578899999999999999999999999999986 7899999999999999999999999998753 2568999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++|+.|+++.+..+. ..++++..++|+...... +...++|+|+||+++..++.+. ...++++++||+||+|.+.
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccC
Confidence 9999999999988764 357899999988764321 2345799999999998887653 4458899999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCC
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLT 291 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 291 (337)
+.++...+..++..+....|++++|||+++. ..+.. ++.
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~ 190 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLN 190 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhC
Confidence 8888889999998888889999999999863 34333 444
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=246.32 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=151.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|++++|++.+++.+.+.|+..|+|+|.++++. +..|+|++++||||||||++|.+|++..+. .++++||++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeC
Confidence 478899999999999999999999999999998 778999999999999999999999999884 3668999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++||.|+++.++.+.. .++++..+.|+...... ....++|+||||+++..++.+. ...+.++++||+||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999999997654 47889888887654321 2244699999999999888753 3457899999999999998
Q ss_pred cccHHHHHHHHHHH---cCCCCeEEEEeecCch
Q psy3143 251 DEHFASQMKEIIRL---CSRTRQTMLFSATMTD 280 (337)
Q Consensus 251 ~~~~~~~~~~i~~~---~~~~~q~i~~SAT~~~ 280 (337)
+.++...+..++.. .....|++++|||+++
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC
Confidence 87777776665443 4567899999999986
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=235.51 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=154.0
Q ss_pred CCCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCe-eEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 109 LNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNT-RVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~-~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.||. |||||.++++.++.|+ ++++++|||||||.++.++++... .....+ ++++++|||+|+.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~----~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE----IGAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc----ccccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 4787 9999999999999998 577789999999997766555321 112234 45557799999999999999998
Q ss_pred hcc-----------------------CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC----------
Q psy3143 187 QFT-----------------------SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF---------- 233 (337)
Q Consensus 187 ~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~---------- 233 (337)
+.+ ++++..++||.....+...+..+++|||||++.+ .+. .+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr-~L~~gYg~~~~~ 161 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSR-LLFSGYGCGFKS 161 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCC-cccccccccccc
Confidence 755 4889999999999999888999999999996544 332 22
Q ss_pred ------CCCCccEEEEecccccccccHHHHHHHHHHHc--CC---CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 234 ------SLSDIEVLVLDEADRMLDEHFASQMKEIIRLC--SR---TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 234 ------~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~--~~---~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
.++++++||||||| ++++|...+..|++.+ ++ ++|+++||||++.++..+...++.+|..+.+....
T Consensus 162 ~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~ 239 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR 239 (844)
T ss_pred ccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccc
Confidence 26889999999999 6789999999999964 33 36999999999999998888888888887776555
Q ss_pred cccCCeeEE
Q psy3143 303 EVALNLRQE 311 (337)
Q Consensus 303 ~~~~~i~q~ 311 (337)
....++.|+
T Consensus 240 l~a~ki~q~ 248 (844)
T TIGR02621 240 LAAKKIVKL 248 (844)
T ss_pred ccccceEEE
Confidence 566677774
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=245.29 Aligned_cols=200 Identities=19% Similarity=0.162 Sum_probs=155.0
Q ss_pred HHHHhC-CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 104 KAIGAL-NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 104 ~~l~~~-~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
+.+.+. |+ .|+++|..++|.++.|+|++++||||+|||+ |.++++..+.. .++++|||+|||+|+.|++..+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHH
Confidence 344443 55 8999999999999999999999999999996 55555554421 3678999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCccH-----HHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-----
Q psy3143 183 RQLAQFTSVEVALSVGGLEV-----KVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD----- 251 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~-----~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~----- 251 (337)
+.++...++.+..+.|+... ......+. ..++|+|+||++|.+++. .+....+++||+||||+|++
T Consensus 144 ~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 144 EKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccch
Confidence 99998888888877776542 22222333 468999999999999875 34566799999999999986
Q ss_pred ------ccHH-HHHHHHHHHcCC------------------------CCeEEEEeecCchh-HHHHHHhhCCCCeEEEeC
Q psy3143 252 ------EHFA-SQMKEIIRLCSR------------------------TRQTMLFSATMTDA-VNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 252 ------~~~~-~~~~~i~~~~~~------------------------~~q~i~~SAT~~~~-~~~~~~~~~~~p~~i~~~ 299 (337)
.||. ..+..++..++. ..|+++||||+++. +.. .+++++..+.++
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 5674 566666666543 68999999999875 433 234567777777
Q ss_pred CCccccCCeeEEEEEec
Q psy3143 300 NNHEVALNLRQEFVSFS 316 (337)
Q Consensus 300 ~~~~~~~~i~q~~~~~~ 316 (337)
.......+|.|.|+.+.
T Consensus 298 ~~~~~~rnI~~~yi~~~ 314 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE 314 (1176)
T ss_pred CcccccCCceEEEEEcc
Confidence 77777789999999765
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=235.86 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=144.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC---CCCeeEEEEcCCHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD---DQNTRVLVLVPTREL 174 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~lil~Pt~~L 174 (337)
+++.+.+.+. .+|..|+++|.++++.++.|+|++++||||||||++|.+|+++.++..... ..+.++|||+||++|
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 4555555544 478999999999999999999999999999999999999999988743221 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC--CCCCccE
Q psy3143 175 GVQVYQVTRQ-------LA----QFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF--SLSDIEV 240 (337)
Q Consensus 175 a~q~~~~~~~-------l~----~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~l~~~~~ 240 (337)
+.|+++.+.. ++ ... ++++...+|+.........+...++|+||||++|..++.+. .+ .++++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999876553 22 122 67889999999888777778888999999999998777543 33 3789999
Q ss_pred EEEecccccccccHHH----HHHHHHHHcCCCCeEEEEeecCch
Q psy3143 241 LVLDEADRMLDEHFAS----QMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 241 iViDEad~l~~~~~~~----~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
|||||||.+.+..+.. .+.++....+...|.|++|||+++
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 9999999998765443 344455555568899999999986
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=241.39 Aligned_cols=205 Identities=17% Similarity=0.144 Sum_probs=156.4
Q ss_pred HHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 101 PLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 101 ~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.+.+.+++ .|| .|+++|..++|.++.|+|++++||||+|||++++++++.... .+.++|||+||++|+.|+.
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHH
Confidence 44555655 788 699999999999999999999999999999976666554421 3568999999999999999
Q ss_pred HHHHHHhhcc--CcEEEEEeCCccHHHHHHH---Hh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc--
Q psy3143 180 QVTRQLAQFT--SVEVALSVGGLEVKVQESV---LR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-- 251 (337)
Q Consensus 180 ~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-- 251 (337)
..++.++... ++.+..++|+.+...+... +. ..++|+|+||++|.+++.. .. ...+++|||||||+|+.
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MK-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--Hh-hCCCCEEEEECceeccccc
Confidence 9999988765 4667788888876655332 33 3589999999999887654 22 26799999999999986
Q ss_pred ---------ccHHHHHHH----HHH----------------------HcCCCCe-EEEEeecCchhHHHHHHhhCCCCeE
Q psy3143 252 ---------EHFASQMKE----IIR----------------------LCSRTRQ-TMLFSATMTDAVNDLVSVSLTRPVR 295 (337)
Q Consensus 252 ---------~~~~~~~~~----i~~----------------------~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~p~~ 295 (337)
.+|.+.+.. +++ .+++..| ++++|||+++.-. ...++++|..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeE
Confidence 477776653 322 2244455 6779999996411 2234578888
Q ss_pred EEeCCCccccCCeeEEEEEecC
Q psy3143 296 VFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 296 i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
+.++.......+|.|.|+.++.
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~ 316 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK 316 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH
Confidence 9888877778899999997754
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-26 Score=227.09 Aligned_cols=216 Identities=20% Similarity=0.206 Sum_probs=161.8
Q ss_pred CCHHHHHHHHh-CCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 98 LSRPLLKAIGA-LNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 98 l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+..+.+.+.+ .+| .||++|.+||+.++.+ +|++++|+||||||.+|++|++..+. .+.+++|++|
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------~g~qvlvLvP 508 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------DGKQVAVLVP 508 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------hCCeEEEEeC
Confidence 45566676655 477 5999999999999875 69999999999999999999998874 3578999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH---h-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL---R-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++||.|+++.++.+....++++..++|+.........+ . ..++|+||||.. +. +.+.++++++|||||+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~--~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ--KDVKFKDLGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh--CCCCcccCCEEEeecc
Confidence 999999999999998888889999998887654443322 2 358999999942 22 2567899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|++. ......++.++...|+++||||+.+....+....+.++..|.+.+.. ...+.+++.... +..-+..+
T Consensus 583 hrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~--~~~i~~~i 653 (926)
T TIGR00580 583 QRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD--PELVREAI 653 (926)
T ss_pred cccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC--HHHHHHHH
Confidence 9852 23344556677789999999998888777777778888888876543 234666655332 11223344
Q ss_pred HHHhhhcCC
Q psy3143 327 LGLMLLREN 335 (337)
Q Consensus 327 L~~ll~~~~ 335 (337)
+..+.+.++
T Consensus 654 ~~el~~g~q 662 (926)
T TIGR00580 654 RRELLRGGQ 662 (926)
T ss_pred HHHHHcCCe
Confidence 455545444
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=230.79 Aligned_cols=215 Identities=22% Similarity=0.218 Sum_probs=166.5
Q ss_pred HHHHHH-HHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 100 RPLLKA-IGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 100 ~~l~~~-l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
....+. ...++| .||+.|.+||+.++.+ +|+++||+||+|||.+|+.+++..+. .+.+++||+||+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~ 659 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcH
Confidence 344444 456677 7999999999999987 79999999999999999988877653 367899999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||.|++..+.......++++..++|+.+...+...+. ..++|+||||+.+ . ..+.++++++|||||+|+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhh
Confidence 99999999999877767888888888887766655443 4689999999643 2 245678999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
+ ++. ....++.++.++|+++||||+.+....++..++++|..|.+.+... ..+.+++..+.. ...+..+++
T Consensus 734 f---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~--~~~k~~il~ 804 (1147)
T PRK10689 734 F---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDS--LVVREAILR 804 (1147)
T ss_pred c---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCc--HHHHHHHHH
Confidence 7 322 2344567788999999999999888888888899999998765432 346665554432 234566777
Q ss_pred HhhhcCCC
Q psy3143 329 LMLLRENC 336 (337)
Q Consensus 329 ~ll~~~~~ 336 (337)
++.+.|++
T Consensus 805 el~r~gqv 812 (1147)
T PRK10689 805 EILRGGQV 812 (1147)
T ss_pred HHhcCCeE
Confidence 77776665
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=223.57 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=157.4
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeEEEEcCCHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~lil~Pt~~La 175 (337)
|++.+.+.+... |..||+.|..|||.+..|+|+++.||||||||+++.+|++..++... ....+..||||+|-|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678888888777 99999999999999999999999999999999999999999998763 223468899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC--CCCCccEEEEeccccccccc
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF--SLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~l~~~~~iViDEad~l~~~~ 253 (337)
..+...+..++...|+.+..-+|.+......+...+.|||+|+||+.|.-++... .+ .|++++++|+||+|.+....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999999989999999999999999998877653 22 38999999999999987654
Q ss_pred H----HHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 254 F----ASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 254 ~----~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
- .-.+.++....+ ..|.|++|||..+.
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~ 196 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP 196 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH
Confidence 3 334455555556 88999999999854
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=229.08 Aligned_cols=178 Identities=21% Similarity=0.321 Sum_probs=148.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|++++|++.+++.+...++. ++++|.++++.+..+++++++||||||||+++.++++..+. .++++||++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------~~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------AGLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------hCCcEEEEech
Confidence 477899999999999999987 99999999999999999999999999999999999998874 24689999999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
++||.|+++.+..+. ..+.++...+|+...... ....++|+|+||+++..++.+. ...+.++++||+||||.+.+
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccC
Confidence 999999999998764 457888888887653221 2245699999999998888664 34588999999999999988
Q ss_pred ccHHHHHHHHH---HHcCCCCeEEEEeecCchh
Q psy3143 252 EHFASQMKEII---RLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 252 ~~~~~~~~~i~---~~~~~~~q~i~~SAT~~~~ 281 (337)
.++...+..++ +.+++..|+|++|||+++.
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~ 182 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSNA 182 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH
Confidence 77666666554 3456788999999999763
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=231.77 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=152.6
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH
Q psy3143 101 PLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ 180 (337)
Q Consensus 101 ~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~ 180 (337)
++.+.+.......|+++|..++|.++.|++++++||||||||+ |.+|+...+.. .++++|||+||++||.|++.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHH
Confidence 4455555555568999999999999999999999999999997 66777666532 26789999999999999999
Q ss_pred HHHHHhhccCcEE---EEEeCCccHHHHHH---HH-hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc--
Q psy3143 181 VTRQLAQFTSVEV---ALSVGGLEVKVQES---VL-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-- 251 (337)
Q Consensus 181 ~~~~l~~~~~~~v---~~~~~~~~~~~~~~---~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-- 251 (337)
.++.++...++.+ +.++|+.+...+.. .+ ..+++|+|+||++|.+++... .. .++++|+||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhcc
Confidence 9999998776554 35678877655432 22 345899999999999887652 12 899999999999997
Q ss_pred ---------ccHHHH-HHHH----------------------HHHcCCCCe--EEEEeec-CchhHHHHHHhhCCCCeEE
Q psy3143 252 ---------EHFASQ-MKEI----------------------IRLCSRTRQ--TMLFSAT-MTDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 252 ---------~~~~~~-~~~i----------------------~~~~~~~~q--~i~~SAT-~~~~~~~~~~~~~~~p~~i 296 (337)
.||... +..+ ++.+++.+| +++|||| .|..+.. .+++++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 566553 3333 223444545 6779999 5655432 345677778
Q ss_pred EeCCCccccCCeeEEEEEecC
Q psy3143 297 FVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 297 ~~~~~~~~~~~i~q~~~~~~~ 317 (337)
.++.......+|.|.|+.+..
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~ 313 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED 313 (1171)
T ss_pred EecCccccccceEEEEEeccc
Confidence 888777778899999986543
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=211.43 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=134.6
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|+...+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHHc--
Confidence 469999999999999999999999999999999999999998752 457999999999999988887754
Q ss_pred ccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccccc--HHHHHHH
Q psy3143 188 FTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLDEH--FASQMKE 260 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~~~--~~~~~~~ 260 (337)
++.+..+.++........ .....++|+++||+++.........+ ....+++|||||||++++++ |+..+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 467777777665543322 22345799999999975422100112 46789999999999998876 6666655
Q ss_pred H--HHHcCCCCeEEEEeecCchhHHHHHHhh--CCCCeEEEe
Q psy3143 261 I--IRLCSRTRQTMLFSATMTDAVNDLVSVS--LTRPVRVFV 298 (337)
Q Consensus 261 i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~i~~ 298 (337)
+ +....+..|++++|||+++.+...+... +.+|..+..
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~ 194 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT 194 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC
Confidence 4 2223357889999999999877655443 456766554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=218.54 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=143.9
Q ss_pred cCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 95 QMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 95 ~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
.++++..+...++. +|+..++++|.++|+.++.|+|+++++|||+|||+||++|++.. ++.+|||+|+++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiS 511 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVS 511 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHH
Confidence 46677777777654 69999999999999999999999999999999999999999853 457999999999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh------cCCCEEEECcHHHHH--HHhcC-CCC-CCCCccEEEE
Q psy3143 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR------KCPDIVIATPGRLLD--HLHNT-PSF-SLSDIEVLVL 243 (337)
Q Consensus 174 La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~Ilv~Tp~~l~~--~l~~~-~~~-~l~~~~~iVi 243 (337)
|+.++...+.. .++....+.++.....+...+. ..++|||+||++|.. .+.+. ..+ ....+.+|||
T Consensus 512 LmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVI 587 (1195)
T PLN03137 512 LIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 587 (1195)
T ss_pred HHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceecc
Confidence 99865555443 3588888888887766654443 457999999999863 12111 011 2345899999
Q ss_pred eccccccccc--HHHHHHHH--HHHcCCCCeEEEEeecCchhHHHHHHhhC--CCCeEEE
Q psy3143 244 DEADRMLDEH--FASQMKEI--IRLCSRTRQTMLFSATMTDAVNDLVSVSL--TRPVRVF 297 (337)
Q Consensus 244 DEad~l~~~~--~~~~~~~i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~p~~i~ 297 (337)
||||+++++| |++.+..+ ++...+..|+++||||+++.+...+...+ .++.++.
T Consensus 588 DEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr 647 (1195)
T PLN03137 588 DEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR 647 (1195)
T ss_pred CcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee
Confidence 9999999987 77777654 33444578899999999999887665443 3444433
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=211.13 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=134.4
Q ss_pred HHHHHHHHh-CCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 100 RPLLKAIGA-LNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 100 ~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
..+.+.+.+ ++| .||++|.++++.+..+ .+++++|+||||||++|++|++..+. .+.+++|++||+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~ 320 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTE 320 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccH
Confidence 455666654 455 6999999999999876 38999999999999999999998873 367899999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---Hh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---LR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||.|++..++.+....++++.+++|+......... +. ..++|+||||+.+.. .+.+++++++|+||+|+
T Consensus 321 ~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 321 ILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhh
Confidence 999999999999998889999999999876544332 22 358999999987643 44588999999999998
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
+.. .....+.......++++||||+.+....+..
T Consensus 395 fg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~ 428 (681)
T PRK10917 395 FGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTA 428 (681)
T ss_pred hhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH
Confidence 632 2222333445568999999998776655544
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=209.83 Aligned_cols=188 Identities=24% Similarity=0.326 Sum_probs=155.0
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
....+..++.+.|+..++.+|.+|+..+.+|+|+||+.+||||||.+|++|+++.++..+ ..++|+|.||++||+.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----~a~AL~lYPtnALa~D 130 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----SARALLLYPTNALAND 130 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----CccEEEEechhhhHhh
Confidence 344568889999999999999999999999999999999999999999999999998654 3389999999999999
Q ss_pred HHHHHHHHhhccC--cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC---CCCCCccEEEEecccccc--
Q psy3143 178 VYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS---FSLSDIEVLVLDEADRML-- 250 (337)
Q Consensus 178 ~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~l~~~~~iViDEad~l~-- 250 (337)
+.+.++++....+ +.+..+.|.+........+.+.|+||+++|.+|..++..... ..+++++|||+||+|.+-
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999988776 788888888888777788899999999999999986654322 237889999999999753
Q ss_pred -cccHHHHHHHHHHHc---CCCCeEEEEeecCchhHHHHHHhh
Q psy3143 251 -DEHFASQMKEIIRLC---SRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 251 -~~~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
..+....++++++.+ +...|+|++|||+.+.-......+
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~ 253 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF 253 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhc
Confidence 334555555555544 567899999999987755544433
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=202.96 Aligned_cols=183 Identities=20% Similarity=0.176 Sum_probs=135.4
Q ss_pred HHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 100 RPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 100 ~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
......|+. +||..|+++|.++++.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.|+
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHH
Confidence 333444443 69999999999999999999999999999999999999998853 45799999999999999
Q ss_pred HHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-
Q psy3143 179 YQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH- 253 (337)
Q Consensus 179 ~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~- 253 (337)
...+..+ ++.+..+.++......... .....+++++||++|....... .+....+++|||||||++.+++
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccC
Confidence 8888764 4666666666554433222 2345789999999987422111 2335578999999999998865
Q ss_pred -HHHHHHHH---HHHcCCCCeEEEEeecCchhHHHHHHh--hCCCCeEEE
Q psy3143 254 -FASQMKEI---IRLCSRTRQTMLFSATMTDAVNDLVSV--SLTRPVRVF 297 (337)
Q Consensus 254 -~~~~~~~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~--~~~~p~~i~ 297 (337)
|++.+..+ ...+ +..+++++|||+++.+...+.. .+.+|....
T Consensus 157 ~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~ 205 (607)
T PRK11057 157 DFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (607)
T ss_pred cccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE
Confidence 66655544 3333 4788999999999887654433 345665544
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=202.80 Aligned_cols=166 Identities=23% Similarity=0.258 Sum_probs=129.6
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.+.+...+| .||++|.++++.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++||++||.
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHH
Confidence 344566777 7999999999999876 26899999999999999999998873 3668999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
|+++.+++++...++++.+++|+......... ....++|+||||+.+.. .+.+.+++++||||+|++...
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~ 372 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVE 372 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHH
Confidence 99999999998889999999999876553322 23457999999987653 355789999999999986422
Q ss_pred cHHHHHHHHHHHcC--CCCeEEEEeecCchhHHHH
Q psy3143 253 HFASQMKEIIRLCS--RTRQTMLFSATMTDAVNDL 285 (337)
Q Consensus 253 ~~~~~~~~i~~~~~--~~~q~i~~SAT~~~~~~~~ 285 (337)
. ...+..... ...++++||||+.+....+
T Consensus 373 q----r~~l~~~~~~~~~~~~l~~SATp~prtl~l 403 (630)
T TIGR00643 373 Q----RKKLREKGQGGFTPHVLVMSATPIPRTLAL 403 (630)
T ss_pred H----HHHHHHhcccCCCCCEEEEeCCCCcHHHHH
Confidence 1 122222222 2678999999987654443
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=202.81 Aligned_cols=187 Identities=15% Similarity=0.161 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHh---------HHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAF---------MLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---------~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
..+|.++++.++.|++++++|+||||||++. ++|.+..+..-......++++|++|||+||.|+...+...
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999983 3334443321111224568999999999999999888775
Q ss_pred hhc---cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHH
Q psy3143 186 AQF---TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262 (337)
Q Consensus 186 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~ 262 (337)
..+ .+..+...+|+..... ........+|+|+|++. ....++.+++|||||||.+...+ ..+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L--------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKL--------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcc--------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 544 4677888899887322 12222356999999752 12347889999999999987766 3444444
Q ss_pred HHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEe
Q psy3143 263 RLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315 (337)
Q Consensus 263 ~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~ 315 (337)
+.. +..+|+++||||++.++..+ ..++.+|..|.++. .+...|.|+|+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~ 365 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKN 365 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeec
Confidence 433 34469999999999988776 57899999999853 3456788988754
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=202.81 Aligned_cols=174 Identities=20% Similarity=0.206 Sum_probs=134.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
+||..++++|.++|+.++.|+|+++++|||+|||++|++|++.. ++.++||+|+++|+.|+...++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~--- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA--- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc---
Confidence 79999999999999999999999999999999999999998742 456899999999999998888774
Q ss_pred cCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--HHHHHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH--FASQMKEII 262 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~--~~~~~~~i~ 262 (337)
++.+..+.++......... ....++|+++||++|....... .+...++++|||||||++.+++ |++.+..+.
T Consensus 77 -gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 77 -GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 4677777777765544332 3356799999999986433221 3446789999999999998765 776665553
Q ss_pred ---HHcCCCCeEEEEeecCchhHHHHHHhhCC--CCeEEE
Q psy3143 263 ---RLCSRTRQTMLFSATMTDAVNDLVSVSLT--RPVRVF 297 (337)
Q Consensus 263 ---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~p~~i~ 297 (337)
..++ ..+++++|||.++.+...+...+. +|..+.
T Consensus 155 ~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~ 193 (591)
T TIGR01389 155 SLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI 193 (591)
T ss_pred HHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe
Confidence 3333 456999999999998876665543 454443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=213.92 Aligned_cols=164 Identities=27% Similarity=0.389 Sum_probs=130.7
Q ss_pred EEcCCCCchhHHhHHHHHHHhhcCCC-------CCCCeeEEEEcCCHHHHHHHHHHHHHHhh------------ccCcEE
Q psy3143 133 GCAATGTGKTAAFMLPILERLLYKPR-------DDQNTRVLVLVPTRELGVQVYQVTRQLAQ------------FTSVEV 193 (337)
Q Consensus 133 v~a~TGsGKT~~~~~~~l~~l~~~~~-------~~~~~~~lil~Pt~~La~q~~~~~~~l~~------------~~~~~v 193 (337)
|+||||||||++|.+|+++.++.... ...+.++|||+|+++|+.|+.+.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999975431 12368999999999999999998875221 246889
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc----HHHHHHHHHHHcCCCC
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH----FASQMKEIIRLCSRTR 269 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~----~~~~~~~i~~~~~~~~ 269 (337)
...+|++....+...+++.++|||+||++|..++.+.....++++++|||||+|.|.+.. +...+.+|...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999999998888778888899999999999988765433458999999999999998653 4556777777778889
Q ss_pred eEEEEeecCchhHHHHHHhhCC--CCeEEEe
Q psy3143 270 QTMLFSATMTDAVNDLVSVSLT--RPVRVFV 298 (337)
Q Consensus 270 q~i~~SAT~~~~~~~~~~~~~~--~p~~i~~ 298 (337)
|+|++|||+++ ...+. .|+. +|+.|..
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~ 189 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVVN 189 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEEC
Confidence 99999999997 34444 3443 4666643
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=165.96 Aligned_cols=188 Identities=37% Similarity=0.530 Sum_probs=151.4
Q ss_pred hCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 108 ALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..++..|+++|.+++..+... +.++++++||+|||.++..+++..+.... ..+++|++|++.++.|+...+..+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 346778999999999999998 99999999999999999999988874321 4579999999999999999888877
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCC-CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCP-DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
...........++.........+.... +|+++|++.+...+... ......++++|+||||.+....+...+..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 654434444444444333333344444 99999999999988764 3567789999999999988757778888888888
Q ss_pred CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
++..+++++|||++.........++.++..+..+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999999988888887777654
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=199.56 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEEE
Q psy3143 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEVA 194 (337)
Q Consensus 116 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v~ 194 (337)
.+-.+.+..+.++++++++|+||||||++|.+++++... ..++++|++|||++|.|+++.+. .+....+..|+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 344566677778899999999999999999999997642 23589999999999999998875 45555677888
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-cccccH-HHHHHHHHHHcCCCCeEE
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEHF-ASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~~-~~~~~~i~~~~~~~~q~i 272 (337)
+.+++... .....+|+|+|||+|++++.. ...++.+++|||||+|. .++..+ ...+..+++.++.+.|++
T Consensus 82 y~vr~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 82 YRMRAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEecCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 87776442 223458999999999999876 45799999999999996 454432 234455667778889999
Q ss_pred EEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 273 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
+||||++... +..++.++..|.+... ...|.++|+.+...
T Consensus 154 lmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~ 193 (812)
T PRK11664 154 IMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAH 193 (812)
T ss_pred EEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchh
Confidence 9999998752 3467777777766543 34588888876543
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=186.64 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=137.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc---CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT---SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
.+.++|+-|+|+|++|.++.+.++-..+ .++-.+++||...+.+...+..+.+|+|+||++|.+.+.. +.+.+..+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeee
Confidence 4679999999999999999777765544 4566688899999999999999999999999999999866 57789999
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcC------CCCeEEEEeecCch-hHHHHHHhhCCCCeEEEeCCCccccCCeeEE
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCS------RTRQTMLFSATMTD-AVNDLVSVSLTRPVRVFVDNNHEVALNLRQE 311 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~------~~~q~i~~SAT~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~ 311 (337)
+++|+||||.++.+++...|.++..+++ ...|.+++|||++. ++..+..+.|.-|.-|........+..+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 9999999999999999999998877764 34689999999984 5667777888999999998888888887776
Q ss_pred EEEecCcchhhHHHHHHHhhh
Q psy3143 312 FVSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~ll~ 332 (337)
...+...- .--+.-|+..++
T Consensus 445 v~lv~p~~-d~sw~~lr~~i~ 464 (725)
T KOG0349|consen 445 VKLVCPSV-DGSWCDLRQFIE 464 (725)
T ss_pred eeecCCcc-CccHHHHhhhhc
Confidence 66555422 233444554443
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=197.97 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEEE
Q psy3143 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEVA 194 (337)
Q Consensus 116 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v~ 194 (337)
.+-.+.+..+..+++++++|+||||||++|.+++++... .+++++|++|||++|.|+++.+. .+....+..|+
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 344556667778899999999999999999999998752 24689999999999999998875 45555567777
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc-ccccccHHH-HHHHHHHHcCCCCeEE
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD-RMLDEHFAS-QMKEIIRLCSRTRQTM 272 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad-~l~~~~~~~-~~~~i~~~~~~~~q~i 272 (337)
+.+++.. .....++|+|+|||+|++++.+ ...++++++|||||+| ++++..+.- .+..+...++...|+|
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 7666533 2334569999999999999876 4579999999999999 477665433 3455666678889999
Q ss_pred EEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecC
Q psy3143 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 273 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
+||||++... +..|+.++..|.+... ...+.++|+.+..
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~ 189 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG 189 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch
Confidence 9999999764 3567777767766543 2347788877654
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=199.89 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=130.0
Q ss_pred ccCCCCHHHHHHHH-----hCCCCCC---hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE
Q psy3143 94 HQMNLSRPLLKAIG-----ALNYIYP---TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165 (337)
Q Consensus 94 ~~~~l~~~l~~~l~-----~~~~~~p---~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 165 (337)
+.+.+...+.+.+. .+||..| +|+|.++++.++.++++++.++||+|||++|++|++..++. +..+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~------g~~v 138 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT------GKPV 138 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh------cCCe
Confidence 56778888888877 6799999 99999999999999999999999999999999999988763 2248
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCCCCCC-------C
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPSFSLS-------D 237 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~l~-------~ 237 (337)
+||+||++||.|+.+++..+.+++++.+++++||.....+...+ .+||+||||++| .+++... .+.++ .
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~ 215 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRG 215 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhccc
Confidence 99999999999999999999999999999999999988776555 479999999999 9998763 34444 5
Q ss_pred ccEEEEecccccc
Q psy3143 238 IEVLVLDEADRML 250 (337)
Q Consensus 238 ~~~iViDEad~l~ 250 (337)
+.++||||||.|+
T Consensus 216 ~~~~IIDEADsmL 228 (970)
T PRK12899 216 FYFAIIDEVDSIL 228 (970)
T ss_pred ccEEEEechhhhh
Confidence 6899999999986
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=197.93 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHH-hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVA-LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
.+...+.+-+...++....+-|+.++... ..++|++||+|||||||+.+++.+++.+... +.++|||+|+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa 89 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALA 89 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHH
Confidence 36778888888888878888787777665 4569999999999999999999999998632 57899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
.+.++.++ .....+++|....|+...... .-..++|+|+||+++-..+++.+. .+..+++|||||+|.+.+....
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 99999999 446679999999998875542 124469999999999998877644 5789999999999998877544
Q ss_pred HHHHHHHHH---cCCCCeEEEEeecCchh
Q psy3143 256 SQMKEIIRL---CSRTRQTMLFSATMTDA 281 (337)
Q Consensus 256 ~~~~~i~~~---~~~~~q~i~~SAT~~~~ 281 (337)
..+..|... .....|++++|||+|+.
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~ 193 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA 193 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH
Confidence 554444433 33448999999999975
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=185.04 Aligned_cols=205 Identities=18% Similarity=0.253 Sum_probs=149.0
Q ss_pred hCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCC----CCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 108 ALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPR----DDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
-++|..++.+|..++|.+... .|+|||||||||||-.|++.+++.+..... .....+++||+|+++||..+...+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 357778899999999998754 599999999999999999999999864221 124679999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CCC-CCCCccEEEEecccccccccHHHHHHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PSF-SLSDIEVLVLDEADRMLDEHFASQMKE 260 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~-~l~~~~~iViDEad~l~~~~~~~~~~~ 260 (337)
.+-....++.|.-+.|++...... . ..++|+|+||++.--.-+.+ +.. .++.+++|||||+|.+.+.- ++.+..
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-GpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc-cchHHH
Confidence 876667799999999998876554 2 33599999999864322222 112 26789999999999776532 233333
Q ss_pred H-------HHHcCCCCeEEEEeecCchhHHHHHHhhCCC--CeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 261 I-------IRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 261 i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
| ........+++++|||+|+-. .++ .|++- +.-++.-.....+..+.|.|+-+...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~e-DvA-~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~ 325 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNYE-DVA-RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK 325 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCHH-HHH-HHhcCCCccceeeecccccccceeeeEEeeecc
Confidence 2 233345678999999999743 222 24443 34444444566777788888887765
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=168.83 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=120.0
Q ss_pred HHHHHHHHHhCCCC--EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc----C
Q psy3143 117 IQAATIPVALLGRD--ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT----S 190 (337)
Q Consensus 117 ~Q~~~i~~~~~~~~--~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~----~ 190 (337)
+|.++++.+..+.+ ++++||||||||++|++|++.. ..++++++|+++|+.|+++.+..+.... +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 48999999998874 7889999999999999998842 3468999999999999999988876432 4
Q ss_pred cEEEEEeCCccHH--H------------------HHHHHhcCCCEEEECcHHHHHHHhcC---CC----CCCCCccEEEE
Q psy3143 191 VEVALSVGGLEVK--V------------------QESVLRKCPDIVIATPGRLLDHLHNT---PS----FSLSDIEVLVL 243 (337)
Q Consensus 191 ~~v~~~~~~~~~~--~------------------~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~----~~l~~~~~iVi 243 (337)
..+..+.|..... . ........++|+++||+.|..++... +. ..+.++++||+
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5555555542211 0 01111246789999999998765431 11 12578999999
Q ss_pred ecccccccccH-----HHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh--CCCCeEE
Q psy3143 244 DEADRMLDEHF-----ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS--LTRPVRV 296 (337)
Q Consensus 244 DEad~l~~~~~-----~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~i 296 (337)
||+|.+..... ......+++......+++++|||+++.+...+... +..|..+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~ 211 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP 211 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee
Confidence 99999764331 11233344444445799999999999888777654 5555443
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=172.94 Aligned_cols=228 Identities=22% Similarity=0.269 Sum_probs=176.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
-+..++.+++++.+-|+..|+..+.|+|..++.. ++.|.|.+|.++|+||||++.-++-+..++. .+.+.|+++
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----~g~KmlfLv 268 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----GGKKMLFLV 268 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----CCCeEEEEe
Confidence 4577899999999999999999999999999987 6789999999999999999998888888762 477899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|..+||+|-+..|+.-...+++.+.+-+|-...+.... ......||+|+|.+.+-.++... ..+.++..+||||
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeee
Confidence 99999999999999877788899988888766554432 22234699999999998877663 5689999999999
Q ss_pred ccccccccHHHHHHHHH---HHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 246 ADRMLDEHFASQMKEII---RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
+|.+-+....+.+..++ +.+-+..|+|.+|||+.+. ..+++.+- ...|.- +..+..+..+.+.+.+. .+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~--a~lV~y---~~RPVplErHlvf~~~e--~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLG--AKLVLY---DERPVPLERHLVFARNE--SE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhC--CeeEee---cCCCCChhHeeeeecCc--hH
Confidence 99887754444444332 3344588999999999865 44454332 222222 23455577778877754 68
Q ss_pred HHHHHHHhhhc
Q psy3143 323 LYNVLGLMLLR 333 (337)
Q Consensus 323 ~~~~L~~ll~~ 333 (337)
|+.++..|..+
T Consensus 419 K~~ii~~L~k~ 429 (830)
T COG1202 419 KWDIIARLVKR 429 (830)
T ss_pred HHHHHHHHHHH
Confidence 88888887753
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=165.88 Aligned_cols=212 Identities=23% Similarity=0.310 Sum_probs=155.2
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.-.|+.+|......++.+ +++++.|||-|||+++++-+...+.. ..+ ++|+++||+.|+.|....+++......
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~----~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW----FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh----cCC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 346788998888777654 99999999999999998888877732 223 899999999999999999999887777
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~ 269 (337)
-.++.+.|..........|... .|+|+||+.+.+-+.. +.+++.++.++|+||||+-.+.. |.......++ ..+++
T Consensus 87 ~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~-~~k~~ 163 (542)
T COG1111 87 DEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR-SAKNP 163 (542)
T ss_pred hheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHH-hccCc
Confidence 7888999988888777777765 9999999999988866 58899999999999999977665 4444444443 34577
Q ss_pred eEEEEeecCchhHHHH---HHhhCCCCeEEEeCCCccc---cCCeeEEEEEecCcch-hhHHHHHHHhh
Q psy3143 270 QTMLFSATMTDAVNDL---VSVSLTRPVRVFVDNNHEV---ALNLRQEFVSFSNIDE-VRLYNVLGLML 331 (337)
Q Consensus 270 q~i~~SAT~~~~~~~~---~~~~~~~p~~i~~~~~~~~---~~~i~q~~~~~~~~~~-~~~~~~L~~ll 331 (337)
.++++|||+..+...+ +...--.-+.|++....-. .-.++-.++.++--.+ .+-.+.|+.+|
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l 232 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDAL 232 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHH
Confidence 8999999998775544 3322223444554433222 2346666777665433 33344444444
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-21 Score=181.83 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=115.4
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+... ..+++|||+||++|+.|+.+.+..++....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 357999999999999999999999999999999765432 222211 234899999999999999999998775544
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
..+..+.+|.... ...+|+|+||+.+.+... ..+.++++||+||||++....+ ..++..+++..+
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~~----~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKSL----TSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchhH----HHHHHhhhccce
Confidence 4555566664321 345899999999876432 2367899999999999876544 455566666788
Q ss_pred EEEEeecCchh
Q psy3143 271 TMLFSATMTDA 281 (337)
Q Consensus 271 ~i~~SAT~~~~ 281 (337)
+++||||+.+.
T Consensus 252 ~lGLTATp~~~ 262 (501)
T PHA02558 252 KFGLTGSLRDG 262 (501)
T ss_pred EEEEeccCCCc
Confidence 99999999754
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=180.59 Aligned_cols=181 Identities=20% Similarity=0.244 Sum_probs=138.4
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
+.+.....+.-.....++.+|...+..++ |+++||++|||+|||++++..+++++-..+ .+++|+++||+.|+.|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----~~KiVF~aP~~pLv~Q 121 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----KGKVVFLAPTRPLVNQ 121 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----cceEEEeeCCchHHHH
Confidence 44444444444555678999999999999 999999999999999999999999884433 5899999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FAS 256 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~ 256 (337)
+...+..++.. ..+....|+.........+-...+|+|+||..|.+.|.......|+.+.++||||||+-.... |..
T Consensus 122 Q~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 122 QIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 88666666544 556666666433333333444569999999999998877544447999999999999977665 666
Q ss_pred HHHHHHHHcCCCCeEEEEeecCchhHHHH
Q psy3143 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDL 285 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SAT~~~~~~~~ 285 (337)
.++..+.......|+|++|||+.....+.
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG~~~~~v 228 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPGSKLEQV 228 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCCccHHHH
Confidence 66666666555669999999999775543
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=172.04 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=107.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH-----
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV----- 204 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~----- 204 (337)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. ..++..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccC
Confidence 58999999999999999999988642 2356899999999999999999998642 13444444332110
Q ss_pred -------HH-HHHh-----cCCCEEEECcHHHHHHHhcC-CC--CCC--CCccEEEEecccccccccHHHHHHHHHHHc-
Q psy3143 205 -------QE-SVLR-----KCPDIVIATPGRLLDHLHNT-PS--FSL--SDIEVLVLDEADRMLDEHFASQMKEIIRLC- 265 (337)
Q Consensus 205 -------~~-~~~~-----~~~~Ilv~Tp~~l~~~l~~~-~~--~~l--~~~~~iViDEad~l~~~~~~~~~~~i~~~~- 265 (337)
.. .... ...+|+|+||++++..+... +. +.+ -..++|||||||.+.+.++.. +..+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 00 0001 12579999999999877652 11 111 123799999999998876544 55554444
Q ss_pred CCCCeEEEEeecCchhHHHHHHhhCC
Q psy3143 266 SRTRQTMLFSATMTDAVNDLVSVSLT 291 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~~~~~~~~~~~~ 291 (337)
..+.|+++||||+|..+..++..+..
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~ 178 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGY 178 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCC
Confidence 35789999999999888777765543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=178.41 Aligned_cols=164 Identities=24% Similarity=0.286 Sum_probs=127.9
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
+...|+++|..++..++.+ ++++++|||+|||+++++++...+. ..++++|||+||++|+.|+...++.+....
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 3446899999999888776 9999999999999999998887762 235789999999999999999999876544
Q ss_pred CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
+..+..+.|+.........+ ...+|+|+||+.+...+.. +.+.+.++++|||||||++........+...+....+..
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 55788888877765544444 3469999999999887755 366788999999999999876543334444444445567
Q ss_pred eEEEEeecCchh
Q psy3143 270 QTMLFSATMTDA 281 (337)
Q Consensus 270 q~i~~SAT~~~~ 281 (337)
++++||||+...
T Consensus 164 ~il~lTaTP~~~ 175 (773)
T PRK13766 164 LVLGLTASPGSD 175 (773)
T ss_pred EEEEEEcCCCCC
Confidence 899999997544
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=166.94 Aligned_cols=131 Identities=24% Similarity=0.201 Sum_probs=108.4
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
-...|+++|..+++.++.|+ |+.+.||+|||++|++|++...+ .++.++||+||++||.|.+.++..+..+.
T Consensus 100 lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 33568999999999999999 99999999999999999998764 36789999999999999999999999999
Q ss_pred CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC------------------------CCCCCCCccEEEEe
Q psy3143 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT------------------------PSFSLSDIEVLVLD 244 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------------------------~~~~l~~~~~iViD 244 (337)
++.+++++|+.... .+....++||+|||..-| .++|..+ .......+.+.|||
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 99999999997643 344456789999999877 4444322 01124668899999
Q ss_pred cccccc
Q psy3143 245 EADRML 250 (337)
Q Consensus 245 Ead~l~ 250 (337)
|+|.++
T Consensus 250 EvDSiL 255 (656)
T PRK12898 250 EADSVL 255 (656)
T ss_pred ccccee
Confidence 999865
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=169.17 Aligned_cols=157 Identities=23% Similarity=0.219 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHhCC---CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 113 YPTPIQAATIPVALLG---RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
.+++.|.+++..+..+ ++++++|+||||||.+|+.++...+. .+.++||++||++|+.|+.+.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------~g~~vLvLvPt~~L~~Q~~~~l~~~f--- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------QGKQALVLVPEIALTPQMLARFRARF--- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHh---
Confidence 5899999999999874 78999999999999999988877763 25689999999999999999888643
Q ss_pred CcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc---HHHHHH--H
Q psy3143 190 SVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH---FASQMK--E 260 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~---~~~~~~--~ 260 (337)
+..+..++|+.+....... ....++|+|||++.+. ..++++.+||+||+|.....+ .....+ .
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 5678888988776544333 3356799999998764 247889999999999754321 111111 2
Q ss_pred HHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 261 IIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 261 i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
+.+....+.|++++|||++.+....+
T Consensus 287 ~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred HHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 33445668899999999886655544
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-19 Score=171.82 Aligned_cols=186 Identities=19% Similarity=0.218 Sum_probs=147.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|..+|++||.++..|-+|+|.|+|.+|||+++-.++.-.- .++.|++|..|-++|.+|-++.|+....
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~tF~---- 365 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKETFG---- 365 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHhcc----
Confidence 357899999999999999999999999999998644332221 1478999999999999999998887542
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.++++.|+.+.. ....++|+|.+.|.+++.+...+ ++++.+||+||+|.+.+...+-.+..++=++|++.++
T Consensus 366 DvgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 366 DVGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ccceeecceeeC-------CCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 344777765543 33589999999999999885443 7899999999999988877666677777889999999
Q ss_pred EEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 272 i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
|++|||+|+..+-.-+..-.+-..|+|......+..+.++ +++.
T Consensus 438 IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~-l~t~ 481 (1248)
T KOG0947|consen 438 ILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHY-LYTK 481 (1248)
T ss_pred EEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEE-EEec
Confidence 9999999998776655555566667766666666677774 4455
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=172.15 Aligned_cols=188 Identities=23% Similarity=0.251 Sum_probs=143.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+| .+.++|++++-.+..|.+|++|||||+|||++.-.++...+. .+.|++|+.|.++|..|.++.+......
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 344 578999999999999999999999999999998777766663 3556999999999999999888764422
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
..-.++++.|+.. ++....++|+|.+.|.+++... ...+..+.+||+||+|.|.+..-+-....++-.++..
T Consensus 189 v~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 189 VADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhccceeccee-------eCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 2233566777544 3445689999999999998774 5668999999999999998887666777788899999
Q ss_pred CeEEEEeecCchhHHHH--HHhhCCCCeEEEeCCCccccCCeeEEEE
Q psy3143 269 RQTMLFSATMTDAVNDL--VSVSLTRPVRVFVDNNHEVALNLRQEFV 313 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~--~~~~~~~p~~i~~~~~~~~~~~i~q~~~ 313 (337)
.|++++|||+|+..+-- +...-..|..+.+.+ ..+..+.|++.
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~ 305 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVY 305 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec--CCCCCeEEEEe
Confidence 99999999999875533 332234566655533 33444555443
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=132.75 Aligned_cols=144 Identities=43% Similarity=0.593 Sum_probs=111.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+++++.++||+|||..++.++...... ....+++|++|++.++.|....+...... +..+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 468999999999999998888877643 23568999999999999999888877655 6777777777665555555
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
.....+|+++|++.+...+... ......++++|+||+|.+....+...............+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5667899999999998877654 33466789999999999877665444333344456778999999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=166.01 Aligned_cols=131 Identities=22% Similarity=0.232 Sum_probs=109.2
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+|+++|..+.+.+..|+ ++.++||+|||++|.+|++-..+ .+..|.|++||+.||.|.++++..+..+++
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL------~G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL------TGKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH------hCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3468999999988887776 99999999999999999954333 244699999999999999999999999999
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCCCccEEEEeccccccc
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~~~~iViDEad~l~~ 251 (337)
+.++++.|+.........+ .++|+||||++| .+++...- .+.++.+.++||||+|.|+-
T Consensus 126 Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999998865444433 479999999999 88886541 23578999999999999764
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=165.92 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=108.7
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
|. .|+++|..+.+.+..|+ |+.+.||+|||+++++|++...+ .+..++|++||+.||.|.+.++..+..++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 54 89999999999888776 99999999999999999986654 36789999999999999999999999999
Q ss_pred CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
++.++++.|+.....+.+. ...++|+||||++| .+++..+ ....+..+.++||||||.|+
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999999884333332 34579999999999 5555432 11346889999999999876
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-17 Score=166.00 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH----HHHHHHHHHHHHHhhccC
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR----ELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~----~La~q~~~~~~~l~~~~~ 190 (337)
...-...+..+..++.++|+|+||||||+. +|.+.... . .+..+++++..|.| +||.++...+.. ..+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~--g-~g~~g~I~~TQPRRlAArsLA~RVA~El~~---~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL--G-RGVKGLIGHTQPRRLAARTVANRIAEELET---ELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc--C-CCCCCceeeCCCcHHHHHHHHHHHHHHHhh---hhc
Confidence 344556666676777888999999999995 55322211 1 11234677778865 666666665553 122
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc-ccccccHHHH-HHHHHHHcCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD-RMLDEHFASQ-MKEIIRLCSRT 268 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad-~l~~~~~~~~-~~~i~~~~~~~ 268 (337)
..+++.+... ......++|+|+|||+|++.+... ..++++++||||||| ++++.+|... +..++.. .++
T Consensus 148 ~~VGY~vrf~------~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 148 GCVGYKVRFN------DQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred ceeceeecCc------cccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 3333322211 112356799999999999999763 459999999999999 5788776542 3333322 246
Q ss_pred CeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecC
Q psy3143 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
.|+|+||||++. ..+...|...| +|.+.... ..+.++|..+..
T Consensus 219 lKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~ 261 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVE 261 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeeccc
Confidence 899999999975 35555555555 46665432 347778877654
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-17 Score=160.71 Aligned_cols=219 Identities=21% Similarity=0.197 Sum_probs=175.8
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHHhC----CC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALL----GR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~----~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
+.+......+.....-.-|+-|..||..+.. ++ |-++||..|-|||.+++=+++-.+. .|.+|.|+||
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVP 651 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVP 651 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcc
Confidence 3455566666655444569999999998764 33 8899999999999999988888874 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|.-||+|.++.|+....+.+++|..+..-.+.+.+...+. +..|||||| +++++. .+.++++.++||||-
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~k--dv~FkdLGLlIIDEE 725 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSK--DVKFKDLGLLIIDEE 725 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCC--CcEEecCCeEEEech
Confidence 9999999999999998999999999988887777665544 568999999 334433 778999999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|+. +-.-+.-++.+..+.-++-||||+-|.-..+.-..+++.-+|.+++....+ |+.++. ..++..-+-.+
T Consensus 726 qRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~--~~d~~~ireAI 796 (1139)
T COG1197 726 QRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVS--EYDDLLIREAI 796 (1139)
T ss_pred hhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEe--cCChHHHHHHH
Confidence 984 444455566667788899999999999999999999999999998766555 555444 44455788899
Q ss_pred HHHhhhcCCC
Q psy3143 327 LGLMLLRENC 336 (337)
Q Consensus 327 L~~ll~~~~~ 336 (337)
+++++|.|++
T Consensus 797 ~REl~RgGQv 806 (1139)
T COG1197 797 LRELLRGGQV 806 (1139)
T ss_pred HHHHhcCCEE
Confidence 9999998874
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=158.38 Aligned_cols=179 Identities=21% Similarity=0.231 Sum_probs=138.4
Q ss_pred HHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 104 KAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 104 ~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
..|+. +|+..+.+-|..+|..+++|+|+++..|||.||++||.+|++-. .+-+|||+|-.+|...+...+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHH
Confidence 33443 58999999999999999999999999999999999999998753 447999999999999888888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--HHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH--FAS 256 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~--~~~ 256 (337)
+..+ +.+..+.+..+.......+ ....++++-+|++|..--... .+.-..+.++||||||++.++| |++
T Consensus 78 ~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 78 EAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCH
Confidence 7754 7777777665544443333 344799999999986532221 2235568899999999999997 998
Q ss_pred HHHHHHHH---cCCCCeEEEEeecCchhHHHHHHh--hCCCCeEEE
Q psy3143 257 QMKEIIRL---CSRTRQTMLFSATMTDAVNDLVSV--SLTRPVRVF 297 (337)
Q Consensus 257 ~~~~i~~~---~~~~~q~i~~SAT~~~~~~~~~~~--~~~~p~~i~ 297 (337)
.+..+-.. ++ +.+++.+|||.++.+...+.. .+..|..+.
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~ 197 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR 197 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE
Confidence 88876543 34 778999999999998877664 445654444
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.3e-18 Score=163.61 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|...... .++..++.++||+|||++|++|++...+ .+..++|++|+++||.|...++..+..++++.
T Consensus 70 rpydVQlig~l~--l~~G~Iaem~TGeGKTLta~Lpa~l~aL------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIV--LHQGNIAEMKTGEGKTLTATMPLYLNAL------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHH--hcCCceeEecCCcchHHHHHHHHHHHhh------cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 455555555444 4445799999999999999999877664 24569999999999999999999999999999
Q ss_pred EEEEeCCcc---HHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 193 VALSVGGLE---VKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 193 v~~~~~~~~---~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
+++++++.. ..........+++|++|||++| .+++... ....++.+.++|+||||.|+
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 988877622 2222333445789999999999 4555321 23447889999999999985
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=161.13 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-+|+++|.- -.+.....-|+.++||+|||++|.+|++..++. +..++||+||++||.|.+.++..+..++++
T Consensus 81 ~~~ydvQli--Gg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 81 LRHFDVQLI--GGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CCcchHHHh--hhhhhccCccccccCCCCchHHHHHHHHHHHhc------CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 346666644 444444556899999999999999999977652 346999999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCCCCC-----CCccEEEEecccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPSFSL-----SDIEVLVLDEADRML 250 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~l-----~~~~~iViDEad~l~ 250 (337)
.+++++|+.........+ .+||+||||++| .+++...-.+++ ..+.++||||||.|+
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 999999998776654444 579999999999 999876533444 589999999999876
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-17 Score=160.29 Aligned_cols=225 Identities=18% Similarity=0.241 Sum_probs=159.9
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-----CCeeEEEEcCC
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDD-----QNTRVLVLVPT 171 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-----~~~~~lil~Pt 171 (337)
++..-..++. |...+..+|......++.+. ++++|||||+|||..+++.+++.+-.+.+.. ...+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 3333444443 44458999999999998876 8999999999999999999999986544321 24589999999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCC-CCCccEEEEecccccc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFS-LSDIEVLVLDEADRML 250 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~-l~~~~~iViDEad~l~ 250 (337)
.+|+..+...+.+.....++.|.-..|........ -...+|+||||+..--.-++.+... .+-++++|+||.|.+.
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999988888888999999999886644322 1235899999998744334433332 3468999999999765
Q ss_pred cc-c--HHHHHHHHHHHc---CCCCeEEEEeecCchh--HHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 251 DE-H--FASQMKEIIRLC---SRTRQTMLFSATMTDA--VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 251 ~~-~--~~~~~~~i~~~~---~~~~q~i~~SAT~~~~--~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
+. | ....+.+.++.. ...++++++|||+|+- +..++. .+|.-++.-..+..+..+.|.||-+...+...
T Consensus 451 DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~---v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLR---VDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhc---cCcccccccCcccCcCCccceEeccccCCchH
Confidence 43 2 223333333332 4578999999999975 333322 23444554556777888999999998876666
Q ss_pred HHHHHHHh
Q psy3143 323 LYNVLGLM 330 (337)
Q Consensus 323 ~~~~L~~l 330 (337)
++..+++.
T Consensus 528 ~~qamNe~ 535 (1674)
T KOG0951|consen 528 RFQAMNEA 535 (1674)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-17 Score=144.97 Aligned_cols=185 Identities=18% Similarity=0.214 Sum_probs=132.8
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 101 PLLKAIGAL-NYIY-PTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 101 ~l~~~l~~~-~~~~-p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
.+.++|++. |+.. -++.|.+|+..+..++ ||+|++|||+||++||.+|.+-. ++.+||+.|..+|...
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHHH
Confidence 345566553 5544 3799999999988765 99999999999999999998864 4579999999999988
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHH------hcCCCEEEECcHHHHH-----HHhcCCCCCCCCccEEEEecc
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVL------RKCPDIVIATPGRLLD-----HLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~Ilv~Tp~~l~~-----~l~~~~~~~l~~~~~iViDEa 246 (337)
+...+..+- +.+..+....+.....+.+ +....+++-||++-.. +++. ...-..+.|+|+|||
T Consensus 77 QiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 77 QIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechh
Confidence 888777654 4444444444433333222 2446799999987532 2221 222445899999999
Q ss_pred ccccccc--HHHHHHHHHH--HcCCCCeEEEEeecCchhHHHHHH--hhCCCCeEEEeCC
Q psy3143 247 DRMLDEH--FASQMKEIIR--LCSRTRQTMLFSATMTDAVNDLVS--VSLTRPVRVFVDN 300 (337)
Q Consensus 247 d~l~~~~--~~~~~~~i~~--~~~~~~q~i~~SAT~~~~~~~~~~--~~~~~p~~i~~~~ 300 (337)
|++.++| |++.+..+-. ..-.....+.++||.++.+.+.+- ..+++|+-|+-.+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP 210 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP 210 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc
Confidence 9999887 7777666532 223467889999999999987654 5778998887544
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=157.53 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=117.5
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT- 189 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~- 189 (337)
...|+|+|..+......+..+++.||||+|||.+++.++...+ .. +...+++|.+||++++.+++.++..+.+..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ---GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 4579999998865544566789999999999999877665433 21 124579999999999999999988754322
Q ss_pred -CcEEEEEeCCccHHHHH---------------------HHHh---c---CCCEEEECcHHHHHHHhcCCCCCCCCc---
Q psy3143 190 -SVEVALSVGGLEVKVQE---------------------SVLR---K---CPDIVIATPGRLLDHLHNTPSFSLSDI--- 238 (337)
Q Consensus 190 -~~~v~~~~~~~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~~l~~~l~~~~~~~l~~~--- 238 (337)
...+.+.+|........ ..+. + ..+|+|||+.+++..+...+...+..+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 45677777765422110 1111 0 158999999999876654433333322
Q ss_pred -cEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHH
Q psy3143 239 -EVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 239 -~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~ 286 (337)
++|||||+|.+ +..+...+..+++.+ .....+|+||||+|..+.+..
T Consensus 440 ~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 440 RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKL 488 (878)
T ss_pred cCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHH
Confidence 58999999986 334445555555544 346789999999998876543
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=133.22 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=102.0
Q ss_pred CChHHHHHHHHHHhC-------CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALL-------GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.++++|.+++..+.. ++.+++.+|||||||.+++..+.... . +++|++|+..|+.|....+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~--------~-~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA--------R-KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------C-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------c-ceeEecCHHHHHHHHHHHHHHh
Confidence 368999999998873 68999999999999999886555554 1 8999999999999999888655
Q ss_pred hhccCcEEE-----------EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC----------CCCCCccEEEEe
Q psy3143 186 AQFTSVEVA-----------LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS----------FSLSDIEVLVLD 244 (337)
Q Consensus 186 ~~~~~~~v~-----------~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----------~~l~~~~~iViD 244 (337)
......... ...................+++++|...|......... ......++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 532111100 01111111122233345568999999999887654211 124567899999
Q ss_pred ccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 245 EADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 245 Ead~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
|||++.... |.. ++. .+...+|+||||+.
T Consensus 154 EaH~~~~~~~~~~----i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYRE----IIE--FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHH----HHH--SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHH----HHc--CCCCeEEEEEeCcc
Confidence 999976555 333 333 55677899999976
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=144.92 Aligned_cols=138 Identities=22% Similarity=0.207 Sum_probs=97.7
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV--- 208 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--- 208 (337)
+++|+||||||.+|+..+...+. .+.++||++|+++|+.|+.+.++... +..+..++++.+.......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHH
Confidence 47899999999999776655552 35689999999999999999888643 4567788887765443332
Q ss_pred -HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-----HHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 209 -LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-----FASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 209 -~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....++|+|||+..+. ..+.++++|||||+|.....+ |...-..+++....+.++|++|||++.+.
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles 143 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLES 143 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHH
Confidence 3345799999998663 237789999999999865322 11111123333445789999999977554
Q ss_pred HHHH
Q psy3143 283 NDLV 286 (337)
Q Consensus 283 ~~~~ 286 (337)
...+
T Consensus 144 ~~~~ 147 (505)
T TIGR00595 144 YHNA 147 (505)
T ss_pred HHHH
Confidence 4433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=155.58 Aligned_cols=179 Identities=18% Similarity=0.153 Sum_probs=118.9
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH-HhhccCcEEEEE
Q psy3143 118 QAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LAQFTSVEVALS 196 (337)
Q Consensus 118 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-l~~~~~~~v~~~ 196 (337)
....+..+..++.++++|+||||||+.....++..- .+..++++++.|.|-.|..+...+.. ++...+..|++.
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 345566666777889999999999996544333321 12245788899999988887655544 443344455543
Q ss_pred eCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc-ccccccHHHH-HHHHHHHcCCCCeEEEE
Q psy3143 197 VGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD-RMLDEHFASQ-MKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad-~l~~~~~~~~-~~~i~~~~~~~~q~i~~ 274 (337)
+.... .....+.|.|+|||+|++.+... ..++.+++||||||| ++++.+|.-. +..++... +..|+|+|
T Consensus 147 vR~~~------~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlm 217 (1283)
T TIGR01967 147 VRFHD------QVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIIT 217 (1283)
T ss_pred EcCCc------ccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEE
Confidence 33222 12345689999999999998763 458999999999999 5888776543 55565443 57899999
Q ss_pred eecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 275 SATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 275 SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
|||+.. ..+...|...| +|.+.... ..+..+|..+.
T Consensus 218 SATld~--~~fa~~F~~ap-vI~V~Gr~---~PVev~Y~~~~ 253 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPLV 253 (1283)
T ss_pred eCCcCH--HHHHHHhcCCC-EEEECCCc---ccceeEEeccc
Confidence 999974 45555444445 46665432 34556666543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=147.41 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH-HHHhhccCcEEE
Q psy3143 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT-RQLAQFTSVEVA 194 (337)
Q Consensus 116 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~-~~l~~~~~~~v~ 194 (337)
.-.++++.+|..+--+||||.||||||+.....++++-+.......++.+-|..|.|..|..+.++. ..++. .+-.|+
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVs 337 (1172)
T KOG0926|consen 259 AEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVS 337 (1172)
T ss_pred HHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Ccccee
Confidence 3445666777777788999999999999999999998877766666779999999999988886544 45554 555555
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc--ccc---ccHHHHHHHHHHHcCC--
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR--MLD---EHFASQMKEIIRLCSR-- 267 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~--l~~---~~~~~~~~~i~~~~~~-- 267 (337)
+.+. ..........|.++|.|.|++-+.+ +|.|..++.|||||||. +.. -|+..++..+......
T Consensus 338 YqIR------fd~ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 338 YQIR------FDGTIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEE------eccccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 5443 2223344568999999999999987 78899999999999996 222 2344555555554443
Q ss_pred ----CCeEEEEeecCc
Q psy3143 268 ----TRQTMLFSATMT 279 (337)
Q Consensus 268 ----~~q~i~~SAT~~ 279 (337)
..++|+||||+.
T Consensus 410 ~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR 425 (1172)
T ss_pred cccCceeEEEEeeeEE
Confidence 678999999987
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-15 Score=138.70 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
++....+++.+.+.=...+|..|++++..|... .+-++.|..|||||.+++++++..+- .|.++..++
T Consensus 245 ~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMA 318 (677)
T COG1200 245 LPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMA 318 (677)
T ss_pred CCccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEec
Confidence 445666777775554557999999999998754 26789999999999999999999883 578899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
||--||.|.+..+.++....+++|..+.|....+.... ......+|+|||-. +++. .+.++++.++|+||
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQd--~V~F~~LgLVIiDE 392 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQD--KVEFHNLGLVIIDE 392 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhhc--ceeecceeEEEEec
Confidence 99999999999999999999999999998775544433 33355899999943 2222 67799999999999
Q ss_pred ccccccccHHHHHHHHHHHcCC-CCeEEEEeecCchhHHHHH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSR-TRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~~~~~~ 286 (337)
=|+. +-.-+..++.... ...+++||||+-|.-..+.
T Consensus 393 QHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt 429 (677)
T COG1200 393 QHRF-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALT 429 (677)
T ss_pred cccc-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHH
Confidence 9994 4444444555554 5678999999877755543
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=151.69 Aligned_cols=184 Identities=20% Similarity=0.169 Sum_probs=137.6
Q ss_pred HHHHH-HhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH
Q psy3143 102 LLKAI-GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ 180 (337)
Q Consensus 102 l~~~l-~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~ 180 (337)
+...+ ..+|...+.+-|.++|..++.|+|++|..|||.||++||.+|++-. ++-+|||.|-..|+..+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHHHH
Confidence 44444 4569999999999999999999999999999999999999998742 5579999999999988766
Q ss_pred HHHHHhhccCcEEEEEeCCccHHHHHHHH----hc--CCCEEEECcHHHHHHHhcC-CCCCCCC---ccEEEEecccccc
Q psy3143 181 VTRQLAQFTSVEVALSVGGLEVKVQESVL----RK--CPDIVIATPGRLLDHLHNT-PSFSLSD---IEVLVLDEADRML 250 (337)
Q Consensus 181 ~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~--~~~Ilv~Tp~~l~~~l~~~-~~~~l~~---~~~iViDEad~l~ 250 (337)
.+.. .++....+.++.....+...+ .. .++|++.||+++...-.-. ....+.. +.++||||||+..
T Consensus 323 ~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 323 HLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred hhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 6633 347777787777765443322 23 4789999999886532211 1122444 8999999999999
Q ss_pred ccc--HHHHHHHHHHH--cCCCCeEEEEeecCchhHHHHHH--hhCCCCeEEEe
Q psy3143 251 DEH--FASQMKEIIRL--CSRTRQTMLFSATMTDAVNDLVS--VSLTRPVRVFV 298 (337)
Q Consensus 251 ~~~--~~~~~~~i~~~--~~~~~q~i~~SAT~~~~~~~~~~--~~~~~p~~i~~ 298 (337)
.++ |++.+..+... ......+|.+|||.+..++..+- ..+++|.++..
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~ 452 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS 452 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc
Confidence 886 88877765432 23347899999999999887554 56677876554
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=142.82 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHhC----CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 112 IYPTPIQAATIPVALL----GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
..++++|.+|+..+.. ++..++++|||+|||..++..+... +.++|||+||++|+.|+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------~~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------KRSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------cCCEEEEECcHHHHHHHHHHHHHhcC
Confidence 3579999999999998 8899999999999999886655443 23499999999999999766555432
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~ 267 (337)
.. ..++.+.|+.. ... . ..|.|+|-..+...- ....+....+.+||+||||++....|......+...
T Consensus 106 ~~-~~~g~~~~~~~-~~~-----~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~--- 173 (442)
T COG1061 106 LN-DEIGIYGGGEK-ELE-----P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA--- 173 (442)
T ss_pred Cc-cccceecCcee-ccC-----C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcc---
Confidence 21 13344433322 111 1 269999998887742 001233447999999999999877765444443322
Q ss_pred CCeEEEEeecCch
Q psy3143 268 TRQTMLFSATMTD 280 (337)
Q Consensus 268 ~~q~i~~SAT~~~ 280 (337)
..++++|||++.
T Consensus 174 -~~~LGLTATp~R 185 (442)
T COG1061 174 -YPRLGLTATPER 185 (442)
T ss_pred -cceeeeccCcee
Confidence 228999999773
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=146.37 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHH-HHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL-ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l-~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
-+|+++|.-..-.+..| -|..+.||+|||+++.+|++ +.+ .+..+-|++||+.||.|.+.++..+..+++
T Consensus 80 ~~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-------~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-------TGKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 46788887666555554 48999999999999999996 555 234577999999999999999999999999
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCC-----CCCCCccEEEEecccccc
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPS-----FSLSDIEVLVLDEADRML 250 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~-----~~l~~~~~iViDEad~l~ 250 (337)
+.++++.|+.....+...+ .++|++|||+.| .+++...-. ..++.+.++||||||.|+
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999998887766654 379999999999 888875422 236789999999999876
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=144.60 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=105.2
Q ss_pred CCChHHHHHHHHHHhC-C--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 112 IYPTPIQAATIPVALL-G--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
..++++|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+..|+.|+...+..+...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV--------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh--------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 3579999999998873 3 4789999999999999875544 33 346999999999999999999987654
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-------CCCCCCCccEEEEecccccccccHHHHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-------PSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~~~~iViDEad~l~~~~~~~~~~~i 261 (337)
....+..+.|+.... ......|+|+|+..+.....+. ..+.-..+.+||+||||++....|. .+
T Consensus 325 ~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr----~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFR----RV 395 (732)
T ss_pred CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHH----HH
Confidence 455666666653321 1223589999998775432111 0122346889999999998654443 34
Q ss_pred HHHcCCCCeEEEEeecCch
Q psy3143 262 IRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 262 ~~~~~~~~q~i~~SAT~~~ 280 (337)
+..+.. ...+++|||+..
T Consensus 396 l~~l~a-~~RLGLTATP~R 413 (732)
T TIGR00603 396 LTIVQA-HCKLGLTATLVR 413 (732)
T ss_pred HHhcCc-CcEEEEeecCcc
Confidence 444433 346999999864
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=122.07 Aligned_cols=184 Identities=17% Similarity=0.213 Sum_probs=136.8
Q ss_pred ccccCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.-.+++++.+...-|+. +....++|.|..+|...+.|.++++..|||.||++||.+|++-. .+.+|+++|
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~p 142 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICP 142 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeech
Confidence 34568888888888765 46778899999999999999999999999999999999998853 567999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHh--cCCCEEEECcHHHHHH---Hhc-CCCCCCCCccE
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLR--KCPDIVIATPGRLLDH---LHN-TPSFSLSDIEV 240 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~--~~~~Ilv~Tp~~l~~~---l~~-~~~~~l~~~~~ 240 (337)
...|++.+.-.++.++ +....+....+..... ...+ ....+++.||+.+... +.+ ...+....+.+
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999988877777765 5544444444332221 1122 2357899999988642 111 12445677899
Q ss_pred EEEeccccccccc--HHHHHHH--HHHHcCCCCeEEEEeecCchhHHHHHHh
Q psy3143 241 LVLDEADRMLDEH--FASQMKE--IIRLCSRTRQTMLFSATMTDAVNDLVSV 288 (337)
Q Consensus 241 iViDEad~l~~~~--~~~~~~~--i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 288 (337)
|.+||+|+-.++| |++.+.. +++.--++..+|+++||.++.+...+..
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHH
Confidence 9999999988776 6666554 3444445778999999999887766554
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=141.81 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEV 193 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v 193 (337)
+....+.+..+.+.+-++|+|+||||||+.....+++..+ ..++++.++.|.|-.|..+++.+. .+....|-.|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 5566677777788889999999999999998888887764 346789999999988888866554 4555556667
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-ccccc-HHHHHHHHHHHcCCCCeE
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEH-FASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~-~~~~~~~i~~~~~~~~q~ 271 (337)
++.+... ........|-++|.|.|++.+++ +..|+.+++|||||||. -++.. ....+..++...+...++
T Consensus 127 GY~iRfe------~~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFE------SKVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEee------ccCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 6665532 23344568999999999999987 55699999999999995 33322 334555666677777999
Q ss_pred EEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 272 i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
|+||||+..+ .+..++.+.-++.++.+. ..+.-+|
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~---fPVei~Y 233 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRT---YPVEIRY 233 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCc---cceEEEe
Confidence 9999999854 344566766666654432 3344445
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-15 Score=140.98 Aligned_cols=168 Identities=22% Similarity=0.239 Sum_probs=130.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.+.|+|..||..+-++.+|+|+|.|.+|||.++-.++...+- .+-||||..|-++|.+|-++.+..=. -.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------~kQRVIYTSPIKALSNQKYREl~~EF----~D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------EKQRVIYTSPIKALSNQKYRELLEEF----KD 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------hcCeEEeeChhhhhcchhHHHHHHHh----cc
Confidence 467999999999999999999999999999998877777763 24589999999999999988877633 25
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
|++..|+... +.....+|+|.+.|..++.+. .--++.+.|||+||+|.|-+...+-.+..-+-.+|.+.+.+
T Consensus 199 VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeecceee-------CCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 6666675443 334579999999999999874 33478899999999999877653333333344578899999
Q ss_pred EEeecCchhHHH--HHHhhCCCCeEEEe
Q psy3143 273 LFSATMTDAVND--LVSVSLTRPVRVFV 298 (337)
Q Consensus 273 ~~SAT~~~~~~~--~~~~~~~~p~~i~~ 298 (337)
++|||+|++.+- .+...-+.|..|.-
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY 298 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY 298 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe
Confidence 999999998653 34444456766554
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=138.36 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=137.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
..+.+....-...++.+.+.+..+.+.+.++|+|.||+|||+.....+++...... ...++++..|+|--|..++++
T Consensus 162 ~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 162 YKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISVAER 238 (924)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHHHHH
Confidence 33333333334457888888999999999999999999999999998988876444 467799999999988888765
Q ss_pred HH-HHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-cccccHHHHHH
Q psy3143 182 TR-QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEHFASQMK 259 (337)
Q Consensus 182 ~~-~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~~~~~~~ 259 (337)
.. +.+...+-.|+...+..+.. .....+++||.|.|++.+.. ...+..+.+||+||+|. -.+..|.-.+.
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHH
Confidence 55 34444565666655543322 22257999999999999987 55689999999999995 23334444444
Q ss_pred HHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC
Q psy3143 260 EIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN 301 (337)
Q Consensus 260 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 301 (337)
+.+-..+++.++|+||||+. .+.++.|+...-++.+...
T Consensus 311 k~lL~~~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~gr 349 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLD---AELFSDYFGGCPVITIPGR 349 (924)
T ss_pred HHHhhhCCCceEEEeeeecc---hHHHHHHhCCCceEeecCC
Confidence 44444568999999999998 5567788888888887654
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=137.50 Aligned_cols=219 Identities=21% Similarity=0.182 Sum_probs=142.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
+-+.+.+.....|+..|.--...++.|+++-+.||||.|||+--++..+-.. ..+.|++||+||+.|+.|+++.
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a------~kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA------KKGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH------hcCCeEEEEecCHHHHHHHHHH
Confidence 3344455544589999999999999999999999999999976544333322 1367899999999999999999
Q ss_pred HHHHhhccC-cEEEE-EeCCccHHH----HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--
Q psy3143 182 TRQLAQFTS-VEVAL-SVGGLEVKV----QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-- 253 (337)
Q Consensus 182 ~~~l~~~~~-~~v~~-~~~~~~~~~----~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-- 253 (337)
+.+++...+ ..+.+ +++....+. ..+..+.++||+|+|..-|...+..- .--++++|++|.+|.++..+
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhcccc
Confidence 999987665 44333 555544333 23444567999999999888766541 11368999999999876422
Q ss_pred ---------HHH-------HHHHHHH------------------------HcCCCCeEEEEeecCchhHH--HHHHhhCC
Q psy3143 254 ---------FAS-------QMKEIIR------------------------LCSRTRQTMLFSATMTDAVN--DLVSVSLT 291 (337)
Q Consensus 254 ---------~~~-------~~~~i~~------------------------~~~~~~q~i~~SAT~~~~~~--~~~~~~~~ 291 (337)
|.. .+..+.. .-.+..++++.|||..+.-. .+++..+
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl- 300 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL- 300 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh-
Confidence 111 1111111 11245689999999876532 2233222
Q ss_pred CCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHHhhhcCCC
Q psy3143 292 RPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLRENC 336 (337)
Q Consensus 292 ~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ll~~~~~ 336 (337)
-+.++.......+|...|+.... ..+...|-..|+.|.+
T Consensus 301 ---gFevG~~~~~LRNIvD~y~~~~~---~e~~~elvk~lG~GgL 339 (1187)
T COG1110 301 ---GFEVGSGGEGLRNIVDIYVESES---LEKVVELVKKLGDGGL 339 (1187)
T ss_pred ---CCccCccchhhhheeeeeccCcc---HHHHHHHHHHhCCCeE
Confidence 23444455566777777765422 4454445555555554
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=120.85 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
++++.|+.+-..+ .+.++.+++|-||+|||......+-..+ ..|+++.|..|....|..++.+++. .+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al------~~G~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL------NQGGRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH------hcCCeEEEecCcccchHHHHHHHHH--hh
Confidence 4688998876554 4567999999999999998655554444 2588999999999999999999987 44
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
.+..+.+++|+...... ..++|+|..+|+++-.. ++++||||+|...-..-......+.+.....
T Consensus 169 ~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA--------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHhh--------ccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 56788899987664432 38999999999986533 6899999999864332122233344555667
Q ss_pred CeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
.-+|.+|||.+..+.+-+... +-..+.++.+.-..+-..-.|+++.+.
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~ 281 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNW 281 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccH
Confidence 789999999998887766542 333344444333333334446666554
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=131.96 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH-HHHHHhhccCcEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLAQFTSVEV 193 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~l~~~~~~~v 193 (337)
..+-.+.+..+-.++-+||.|+||||||+.....+.+..+. ..+++.+..|.|-.|..+++ +..++....|-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 55666778888888999999999999999977777766532 34459999999999998865 4445666667777
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc--cccccHHHHHHHHHHHcCCCCeE
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR--MLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~--l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
++.+.- .........|.+.|.|.|++.+.. +..|+.+++|||||||. +...-....++.+++. ++..++
T Consensus 128 GY~IRF------ed~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lkl 198 (674)
T KOG0922|consen 128 GYTIRF------EDSTSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKL 198 (674)
T ss_pred eeEEEe------cccCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceE
Confidence 666542 222223458999999999998877 55689999999999995 2222233444444443 345789
Q ss_pred EEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 272 i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
|+||||+.. +.+..|+.+-.++.++.
T Consensus 199 IimSATlda---~kfS~yF~~a~i~~i~G 224 (674)
T KOG0922|consen 199 IIMSATLDA---EKFSEYFNNAPILTIPG 224 (674)
T ss_pred EEEeeeecH---HHHHHHhcCCceEeecC
Confidence 999999984 34556777655555544
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=144.22 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=106.6
Q ss_pred CCChHHHHHHHHHHh----C-CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 112 IYPTPIQAATIPVAL----L-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..++++|..|+..+. . .+.++++++||||||.+++. ++..++... ...++|||+|+++|+.|....+..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~---~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK---RFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC---ccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 358999999998765 2 36899999999999988544 444444322 24689999999999999999888764
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC----CCCCCCCccEEEEeccccccc------c----
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT----PSFSLSDIEVLVLDEADRMLD------E---- 252 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~~~~iViDEad~l~~------~---- 252 (337)
......+..+++..... .........|+|+|...|...+... ..+.+..+++||+||||+-.. .
T Consensus 488 ~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred cccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 22221111111111111 1112234589999999987765321 124577899999999998431 0
Q ss_pred -----cHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 253 -----HFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 253 -----~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
.+...+..++.+.. ...|+||||+...
T Consensus 566 ~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~ 597 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD--AVKIGLTATPALH 597 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC--ccEEEEecCCccc
Confidence 12355666666553 4679999998643
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=122.95 Aligned_cols=195 Identities=21% Similarity=0.192 Sum_probs=145.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..++|...+.+++..+-|++..-...+..+...+..+.+++-+++.|.||||||.....+++...+... ..+.+.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-----~~v~CT 97 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-----TGVACT 97 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----cceeec
Confidence 368899999999999999888776677777788888888899999999999999998888887765332 458999
Q ss_pred cCCHHHHHHHHH-HHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQ-VTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
.|.|..|.++.. +..++.-..|..|+..+.-..+......++ +||.|+|++-..+ ...+..+.+||+||||
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk------y~tDgmLlrEams--~p~l~~y~viiLDeah 169 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK------YCTDGMLLREAMS--DPLLGRYGVIILDEAH 169 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHH------HhcchHHHHHHhh--CcccccccEEEechhh
Confidence 999999999864 444555455666665554443333333333 5899999987776 4458999999999999
Q ss_pred c--cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 248 R--MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 248 ~--l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
. +........++.++... +..++|+||||+-.. .+..|+.++-.+.++.
T Consensus 170 ERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG 220 (699)
T ss_pred hhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC
Confidence 5 22333445566666655 488999999998743 3557888888888865
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-14 Score=131.25 Aligned_cols=206 Identities=25% Similarity=0.284 Sum_probs=139.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEc-CCCCch--hHHhHHHHHHHhhc-------------------------CCCCC
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCA-ATGTGK--TAAFMLPILERLLY-------------------------KPRDD 160 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a-~TGsGK--T~~~~~~~l~~l~~-------------------------~~~~~ 160 (337)
..-..+|+.|.+.+..+.+++|++..- ..+.|+ +-.|.+.+++++++ +.++.
T Consensus 212 K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 212 KKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 345678999999999999999998632 224455 55677888887752 12334
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE-------------------------------EEEeCCcc--------
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV-------------------------------ALSVGGLE-------- 201 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v-------------------------------~~~~~~~~-------- 201 (337)
.+|+||||||+|+.|..+.+.+..+..+.+-.- .++.|.+.
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 578999999999999999999998854432210 01111111
Q ss_pred -----HHHHHHHHhcCCCEEEECcHHHHHHHhcCCC----CC-CCCccEEEEecccccccccHHHHHHHHHHHcC-----
Q psy3143 202 -----VKVQESVLRKCPDIVIATPGRLLDHLHNTPS----FS-LSDIEVLVLDEADRMLDEHFASQMKEIIRLCS----- 266 (337)
Q Consensus 202 -----~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----~~-l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~----- 266 (337)
.+..... ...||+||+|-.|...+.+.+. ++ |+++.++|||.||.|+.++|.+... |+..++
T Consensus 372 ftkKtikLys~f--y~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~-ifdHLn~~P~k 448 (698)
T KOG2340|consen 372 FTKKTIKLYSKF--YKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLH-IFDHLNLQPSK 448 (698)
T ss_pred HHHHHHHHHhhh--cccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHH-HHHHhhcCccc
Confidence 1111111 3469999999999999985533 22 7999999999999999999865443 443331
Q ss_pred -------------------CCCeEEEEeecCchhHHHHHHhhCCCC-eEEEeCC------CccccCCeeEEEEEecC
Q psy3143 267 -------------------RTRQTMLFSATMTDAVNDLVSVSLTRP-VRVFVDN------NHEVALNLRQEFVSFSN 317 (337)
Q Consensus 267 -------------------~~~q~i~~SAT~~~~~~~~~~~~~~~p-~~i~~~~------~~~~~~~i~q~~~~~~~ 317 (337)
.-+|+++||+.-.+.++.++..++.|. ..|...+ .......|.|.|.++..
T Consensus 449 ~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~ 525 (698)
T KOG2340|consen 449 QHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEV 525 (698)
T ss_pred ccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheec
Confidence 124999999999999999998877763 2222222 22333557787777654
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-14 Score=138.27 Aligned_cols=129 Identities=24% Similarity=0.281 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|. +-.+...+.-|+.++||.|||+++.+|++...+ .+..|.||+|++.||.|..+++..+..++++.
T Consensus 82 ~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al------~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGls 153 (908)
T PRK13107 82 RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL------TGKGVHVITVNDYLARRDAENNRPLFEFLGLT 153 (908)
T ss_pred CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 4666664 444444556689999999999999999987765 24459999999999999999999999999999
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCCCC-----CCCccEEEEeccccccc
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPSFS-----LSDIEVLVLDEADRMLD 251 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~-----l~~~~~iViDEad~l~~ 251 (337)
++++.++.+.... .-...+||++|||+.| .+++..+-.+. ...+.++||||||.|+-
T Consensus 154 v~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 154 VGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred EEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9999998875332 2334679999999999 88886642222 37889999999998763
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-13 Score=124.76 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=123.8
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH-HHHHHHhhc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY-QVTRQLAQF 188 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~-~~~~~l~~~ 188 (337)
......++-.+.+.++...+-++|.|.||||||+.....+.+.-+.. .+.++-+..|.|..|..+. ++...++-.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 33444566667777888888899999999999999877777665422 2455999999999999985 566677766
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc--cccccHHHHHHHHHHHcC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR--MLDEHFASQMKEIIRLCS 266 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~--l~~~~~~~~~~~i~~~~~ 266 (337)
+|..|++.+.-..+ .....-|-++|.|+|++-+.. ..+|+++++|||||||. +...-....+..|.+..
T Consensus 338 LG~eVGYsIRFEdc------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R- 408 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDC------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR- 408 (902)
T ss_pred cccccceEEEeccc------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-
Confidence 66666655542222 223346889999999998877 56799999999999995 22233445556665554
Q ss_pred CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 267 ~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
+...+++.|||+..+ -++.|+.+.-++.++.
T Consensus 409 pdLKllIsSAT~DAe---kFS~fFDdapIF~iPG 439 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE---KFSAFFDDAPIFRIPG 439 (902)
T ss_pred CcceEEeeccccCHH---HHHHhccCCcEEeccC
Confidence 588999999999854 3445666544444443
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=133.01 Aligned_cols=146 Identities=24% Similarity=0.249 Sum_probs=104.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHH----HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIP----VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
+++.+.+.+...||. +++.|.+.+. .+..++++++.||||+|||++|++|++.... .+.+++|.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHH
Confidence 445677777778886 7899998665 5567889999999999999999999988763 2458999999999
Q ss_pred HHHHHHH-HHHHHhhccC--cEEEEEeCCccHH---HHH-----------------------------------------
Q psy3143 174 LGVQVYQ-VTRQLAQFTS--VEVALSVGGLEVK---VQE----------------------------------------- 206 (337)
Q Consensus 174 La~q~~~-~~~~l~~~~~--~~v~~~~~~~~~~---~~~----------------------------------------- 206 (337)
|..|+.. .+..+.+..+ ++++.+.|+.++- ...
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999854 5666665544 6666666554320 000
Q ss_pred ---------------------------HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 207 ---------------------------SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 207 ---------------------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
+.....++|+|+.-..|+..+.... ..+....++||||||++.+
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHH
Confidence 0000125899999888887764432 2356678999999999764
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=127.17 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHh----C------CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVAL----L------GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
|...|..|+..+. . .+..+++.+||||||+..+..+...+ . ....+++|||+|+.+|..|+.+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~---~~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E---LLKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h---hcCCCeEEEEECcHHHHHHHHHHHH
Confidence 6788999987653 2 25799999999999998765543333 2 1246789999999999999999998
Q ss_pred HHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcC-CCCCCCCc-cEEEEecccccccccHHHHHHH
Q psy3143 184 QLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNT-PSFSLSDI-EVLVLDEADRMLDEHFASQMKE 260 (337)
Q Consensus 184 ~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~-~~iViDEad~l~~~~~~~~~~~ 260 (337)
.+..... .+..+.......+. ....|+|+|.+.+...+... ..+....- -+||+||||+.....|...+.
T Consensus 315 ~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~- 387 (667)
T TIGR00348 315 SLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK- 387 (667)
T ss_pred hhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH-
Confidence 8763211 11112222223232 33589999999998644321 11111111 289999999865444433333
Q ss_pred HHHHcCCCCeEEEEeecCch
Q psy3143 261 IIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 261 i~~~~~~~~q~i~~SAT~~~ 280 (337)
+.++ +...++||||+-.
T Consensus 388 --~~~p-~a~~lGfTaTP~~ 404 (667)
T TIGR00348 388 --KALK-NASFFGFTGTPIF 404 (667)
T ss_pred --hhCC-CCcEEEEeCCCcc
Confidence 3344 5679999999853
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-12 Score=123.66 Aligned_cols=73 Identities=25% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh-hc--cCcEEEEEeC
Q psy3143 122 IPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA-QF--TSVEVALSVG 198 (337)
Q Consensus 122 i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~-~~--~~~~v~~~~~ 198 (337)
...+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +. .++++.++.|
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~----~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER----PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc----cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 34456778999999999999999999999887421 25789999999999999999888877 33 2455555444
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=128.29 Aligned_cols=184 Identities=19% Similarity=0.174 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHhCC---C-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVALLG---R-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~---~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+.+.|..++..+... . .+++.||||+|||.+.+++++..+... .....|++++.|++.++.++++.++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 3488999999887754 3 678999999999999999998887542 225789999999999999999999987755
Q ss_pred cCcEEEEEeCCccHHHHHHH--------------HhcCCCEEEECcHHHHHHHhcCCCCC-C--CCccEEEEeccccccc
Q psy3143 189 TSVEVALSVGGLEVKVQESV--------------LRKCPDIVIATPGRLLDHLHNTPSFS-L--SDIEVLVLDEADRMLD 251 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~--------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~-l--~~~~~iViDEad~l~~ 251 (337)
........++.......... ......+.++||-...........+. + -..+.+|+||+|.+.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 44333323333322221111 00113456667666655332222222 1 1247899999998877
Q ss_pred ccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 252 EHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 252 ~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
......+..++..+ .-+..+|+||||+|+...+.+...+.....+..
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~ 400 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE 400 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceec
Confidence 73333333333333 447889999999999999988877766555554
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=127.74 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=95.7
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-HHHHHHHhh
Q psy3143 113 YPTPIQAATIPV----ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-YQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~l~~ 187 (337)
.+++.|.+.... +..++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+ .+.+..+.+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKAIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 578889884443 34567899999999999999999988754 256899999999999999 577888888
Q ss_pred ccCcEEEEEeCCccHHHH---HHH-----------------------------------------H--------------
Q psy3143 188 FTSVEVALSVGGLEVKVQ---ESV-----------------------------------------L-------------- 209 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~---~~~-----------------------------------------~-------------- 209 (337)
..++.+..+.|+.++-.. ... +
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 778877777765542100 000 0
Q ss_pred -------------hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 210 -------------RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 210 -------------~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
....||+|+.-..|+..+...+ .+..++++||||||++.
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLM 449 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhH
Confidence 0124899999888877664432 36789999999999975
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=100.33 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=82.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
|+-.++...+|+|||.-.+.-++...+. .+.|+|||.|||.++..+.+.++.. ++++.....+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-----~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~------- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-----RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR------- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-----TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-----ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec-------
Confidence 4456789999999999766655554432 4778999999999999988877643 23332211110
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--HHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH--FASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+.-|-|+|-+.+.+.+.+ ...+.++++||+||||..-..+ +...+..... ...+.+|+||||.|...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCC
Confidence 1123346888999999888876 3447899999999999754333 2233333322 23468999999998654
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=117.15 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=113.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~ 190 (337)
...+..+.+.+..+-.++-++|.|.||||||......+++.-+ ...+.+.+..|.|..|..+++... ++...+|
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY-----~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY-----ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc-----ccCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 3445566666666667788999999999999997777766543 235578899999999999876554 5655556
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-ccccc-HHHHHHHHHHHcCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEH-FASQMKEIIRLCSRT 268 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~-~~~~~~~i~~~~~~~ 268 (337)
-.|++.+.-. .......-|-+.|.|.|++-... .-.|..+++||+||||. -++.. ....++.++ .-.++
T Consensus 430 ~~VGYsIRFE------dvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrd 500 (1042)
T KOG0924|consen 430 DTVGYSIRFE------DVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRD 500 (1042)
T ss_pred cccceEEEee------ecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHH-Hhhcc
Confidence 6665554422 22223457999999999986654 44588999999999995 22222 112222222 23457
Q ss_pred CeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
.++|++|||+... -+..|+.+--.+.+
T Consensus 501 lKliVtSATm~a~---kf~nfFgn~p~f~I 527 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQ---KFSNFFGNCPQFTI 527 (1042)
T ss_pred ceEEEeeccccHH---HHHHHhCCCceeee
Confidence 8999999999843 23345554333333
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=118.50 Aligned_cols=171 Identities=21% Similarity=0.226 Sum_probs=120.3
Q ss_pred CChHHHHHHHHHHhCC----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVALLG----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
..++-|..++..+... +..++.|.||||||.+|+-.+-..+. .|..+|+|+|-..|..|+...++...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------~GkqvLvLVPEI~Ltpq~~~rf~~rF-- 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------QGKQVLVLVPEIALTPQLLARFKARF-- 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------cCCEEEEEeccccchHHHHHHHHHHh--
Confidence 4578899999988655 58899999999999999887777773 46789999999999999999888755
Q ss_pred cCcEEEEEeCCccHHHH----HHHHhcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccc---cc--HHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQ----ESVLRKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLD---EH--FASQM 258 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~----~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~---~~--~~~~~ 258 (337)
+..+..++++.+.... .+.......|+|||= ...| .|+++.+|||||-|.-.. .+ |...=
T Consensus 270 -g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR---------SAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 -GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR---------SALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred -CCChhhhcccCChHHHHHHHHHHhcCCceEEEEec---------hhhcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 4677777777655444 344446689999992 2222 388999999999996432 11 22233
Q ss_pred HHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc
Q psy3143 259 KEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303 (337)
Q Consensus 259 ~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 303 (337)
..+++....++++|+-|||.+= +.+...--.....+....+..
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~ 382 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAG 382 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEcccccc
Confidence 3455555678999999999664 443332222234444444433
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=125.38 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=130.7
Q ss_pred CCHHHHHH-HHhCCCCCChHHHHHHH--HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 98 LSRPLLKA-IGALNYIYPTPIQAATI--PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 98 l~~~l~~~-l~~~~~~~p~~~Q~~~i--~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
+.+.+... .+..|....+.||..++ |.++.+++.|+.+||+.|||+++-+-++..++.. +..++.++|....
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-----rr~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-----RRNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----hhceeEecceeeh
Confidence 44444444 45568899999999997 5677888999999999999999988888877643 3459999999988
Q ss_pred HHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEEeccccccccc
Q psy3143 175 GVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 175 a~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iViDEad~l~~~~ 253 (337)
+..-...+..+....|+.+..+.|+...... ...-.+.|||.++-..++..- ..-.+..+.+||+||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 8887788888888888888877765432211 222389999998766554321 01236779999999999999888
Q ss_pred HHHHHHHHHHHc-----CCCCeEEEEeecCchh
Q psy3143 254 FASQMKEIIRLC-----SRTRQTMLFSATMTDA 281 (337)
Q Consensus 254 ~~~~~~~i~~~~-----~~~~q~i~~SAT~~~~ 281 (337)
....+..++... ....|+|+||||+++.
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 776666665432 3346799999999974
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=113.80 Aligned_cols=161 Identities=23% Similarity=0.346 Sum_probs=110.4
Q ss_pred CCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-C--------------------------------------------
Q psy3143 156 KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-S-------------------------------------------- 190 (337)
Q Consensus 156 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~-------------------------------------------- 190 (337)
+.++..+|+||||+|+|..|..+.+.+..+.... .
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 4566679999999999999999999888876431 1
Q ss_pred -cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC----CCCC-CCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 191 -VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT----PSFS-LSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 191 -~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~-l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
+++++.+.+...+..... ..+|||||+|-.|...+... ...+ |+++.++|+|.||.|++++|.. +..+++.
T Consensus 111 ~FrlGik~trk~ikLys~F--y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~ 187 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDF--YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEH 187 (442)
T ss_pred eEEEeEEEecCeeeeeccc--ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHH
Confidence 011222211111111111 23599999999999988742 2333 8999999999999999999854 4444444
Q ss_pred cC------------------------CCCeEEEEeecCchhHHHHHHhhCCCC-eEEEeCC--C-----ccccCCeeEEE
Q psy3143 265 CS------------------------RTRQTMLFSATMTDAVNDLVSVSLTRP-VRVFVDN--N-----HEVALNLRQEF 312 (337)
Q Consensus 265 ~~------------------------~~~q~i~~SAT~~~~~~~~~~~~~~~p-~~i~~~~--~-----~~~~~~i~q~~ 312 (337)
++ .-+|+|++|+..++++..++...+.|. ..+.+.. . ......|+|.|
T Consensus 188 lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F 267 (442)
T PF06862_consen 188 LNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVF 267 (442)
T ss_pred hccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEE
Confidence 32 235999999999999999999866653 2223222 2 24457899999
Q ss_pred EEecCcc
Q psy3143 313 VSFSNID 319 (337)
Q Consensus 313 ~~~~~~~ 319 (337)
.+++...
T Consensus 268 ~r~~~~s 274 (442)
T PF06862_consen 268 QRFDCSS 274 (442)
T ss_pred EEecCCC
Confidence 9987543
|
; GO: 0005634 nucleus |
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=111.63 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=104.3
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+.++|..++..++ +|.+.|++-.+|.|||+..+..+ ..+... .+..+.+|||||. .+..++...+..++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~--~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p- 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEY--RGITGPHMVVAPK-STLGNWMNEIRRFCP- 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHh--cCCCCCEEEEeCh-HHHHHHHHHHHHHCC-
Confidence 57899999998875 57789999999999999864433 333211 1224569999997 445666667776653
Q ss_pred cCcEEEEEeCCccHHHHH---HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 189 TSVEVALSVGGLEVKVQE---SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~---~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
.+.+..++|........ ......++|+|+|.+.+..... .+.--.+.+|||||||++-... ..+...++.+
T Consensus 244 -~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L 317 (1033)
T PLN03142 244 -VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLF 317 (1033)
T ss_pred -CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH---HhccCCCCEEEEcCccccCCHH--HHHHHHHHHh
Confidence 45666666654432221 1123457999999998876432 2223457899999999975433 3344444555
Q ss_pred CCCCeEEEEeecCc-hhHHHHH
Q psy3143 266 SRTRQTMLFSATMT-DAVNDLV 286 (337)
Q Consensus 266 ~~~~q~i~~SAT~~-~~~~~~~ 286 (337)
.... .+++|+|+- +.+.++.
T Consensus 318 ~a~~-RLLLTGTPlqNnl~ELw 338 (1033)
T PLN03142 318 STNY-RLLITGTPLQNNLHELW 338 (1033)
T ss_pred hcCc-EEEEecCCCCCCHHHHH
Confidence 4443 477899965 3444443
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=106.60 Aligned_cols=72 Identities=28% Similarity=0.210 Sum_probs=57.4
Q ss_pred ChHHHHHHH----HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATI----PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 114 p~~~Q~~~i----~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|++.|.+.+ ..+..|.++++.||||+|||++|++|++.++........+.+++|+++|..+..|....++++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 455678899999999999999999999987754332223458999999999988887777655
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=106.60 Aligned_cols=72 Identities=28% Similarity=0.210 Sum_probs=57.4
Q ss_pred ChHHHHHHH----HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATI----PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 114 p~~~Q~~~i----~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|++.|.+.+ ..+..|.++++.||||+|||++|++|++.++........+.+++|+++|..+..|....++++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 455678899999999999999999999987754332223458999999999988887777655
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=120.81 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=112.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-Cc
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SV 191 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~ 191 (337)
.|..||.+.+..+-.+..++|.|||.+|||.+-.. +++..+... ...-+|+++||.+|+.|+...+....... -.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRes---D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRES---DSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhhc---CCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 57899999999999999999999999999987544 445554332 35679999999999999977666554322 22
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC--CCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT--PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
+...+.|......+.. .-+|+|+|+-|+.+-.++... .......++++|+||+|.+....-......++-.. .|
T Consensus 587 rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PC 662 (1330)
T ss_pred cchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CC
Confidence 3333333332222211 235799999999999888663 23346789999999999886554323333333333 68
Q ss_pred eEEEEeecCchh
Q psy3143 270 QTMLFSATMTDA 281 (337)
Q Consensus 270 q~i~~SAT~~~~ 281 (337)
.++++|||+.+.
T Consensus 663 P~L~LSATigN~ 674 (1330)
T KOG0949|consen 663 PFLVLSATIGNP 674 (1330)
T ss_pred CeeEEecccCCH
Confidence 899999999875
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=107.30 Aligned_cols=149 Identities=21% Similarity=0.162 Sum_probs=85.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
..+.++++..+|+|||...+..+. .+...........+|||+|. .+..|+...+..+......++..+.|........
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 345789999999999988766544 33322222223359999999 7778888888887755466777776665222222
Q ss_pred HHHhcCCCEEEECcHHHHHHHhc--CCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHN--TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.......+|+|+|.+.+...... ...+.--.+++||+||+|.+-+.. ......+..+. ....+++|||+-.
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccccccccc-cceEEeecccccc
Confidence 22334569999999998810000 001112348999999999883222 23333333344 5667889999643
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-11 Score=114.75 Aligned_cols=167 Identities=21% Similarity=0.252 Sum_probs=113.6
Q ss_pred CCChHHHHHHHHHH----hCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 112 IYPTPIQAATIPVA----LLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~----~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..|+.+|..||..+ ..|+ .+++++.||+|||..+ +.++..|++.. .-.|+|+|+-++.|+.|.+..+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~---~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG---WVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc---hhheeeEEechHHHHHHHHHHHHHhC
Confidence 45789999998764 3454 6999999999999886 44556665332 35689999999999999998888766
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC----CCCCCCCccEEEEecccccccccHHHHHHHHH
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT----PSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~ 262 (337)
.+-. .+..+.+.... ..+.|.|+|-..+...+... ..+....+++|||||||+-....| ..|+
T Consensus 240 P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~----~~I~ 306 (875)
T COG4096 240 PFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEW----SSIL 306 (875)
T ss_pred CCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhh----HHHH
Confidence 4422 22222221111 13589999999998877543 233456699999999998543333 3555
Q ss_pred HHcCCCCeEEEEeecCchhHHHHHHhhC-CCCeEEE
Q psy3143 263 RLCSRTRQTMLFSATMTDAVNDLVSVSL-TRPVRVF 297 (337)
Q Consensus 263 ~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~p~~i~ 297 (337)
.++.... ++++||+...+..-...|+ ..|+..+
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~Y 340 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAY 340 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceee
Confidence 5554333 3449999887776665666 6666655
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-11 Score=115.88 Aligned_cols=129 Identities=21% Similarity=0.198 Sum_probs=100.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-+|+++|. +-.+.....-|+...||+|||+++.+|++-..+ .|..|-|++||.-||.|-+.++..+..++++
T Consensus 81 m~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 81 MRHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 45677775 444444566788999999999999999876654 4677999999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
.++++.+..........+. +||++||..-+ .++|+.+ .......+.++||||+|.++
T Consensus 153 ~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999988877665555554 69999999875 3333321 11124789999999999865
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=113.70 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=104.1
Q ss_pred HHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 105 AIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 105 ~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+..+.--.+|+++|.-+--.+..|+ |....||+|||+++.+|++...+ .|..|-+++||.-||.|-+.++..
T Consensus 72 a~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al------~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 72 GAKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL------TGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred HHHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH------cCCCeEEEeccHHHHHhhHHHHHH
Confidence 3333333568888877766555555 89999999999999998887775 466799999999999999999999
Q ss_pred HhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHH-HHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLL-DHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
+..++|+.++++.++.........+ .+||++||..-+- ++|..+ .......+.+.||||+|.++
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999998877666554444 4599999997652 333321 11124678899999999865
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=110.59 Aligned_cols=134 Identities=22% Similarity=0.172 Sum_probs=104.3
Q ss_pred HhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 107 GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 107 ~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.+.-.-+|+.+|.-..-.++.|+ |+...||+|||++..+|++...+ .|..|-|++|+.-||.|-+.++..+.
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33333568999988888777664 77999999999999998887765 46679999999999999999999999
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-----HHHHhcC-CCCCCCCccEEEEecccccc
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-----LDHLHNT-PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~~-~~~~l~~~~~iViDEad~l~ 250 (337)
.++++.++++.++.........+ .+||+++|..-+ .+.+... .......+.+.||||+|.++
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999999998887766555444 459999998754 3333211 12235678999999999865
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.8e-10 Score=95.88 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=99.5
Q ss_pred HHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 106 IGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 106 l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
..+.-...|++.|.-+.-.+..|+ |+...||-|||++..+|++-..+ .|..|=|++.+..||.+=+.++..+
T Consensus 70 ~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 70 ARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 333344578999998887776665 99999999999998887766654 3667999999999999999999999
Q ss_pred hhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHH-HHHhcC----CCC-CCCCccEEEEecccccc
Q psy3143 186 AQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLL-DHLHNT----PSF-SLSDIEVLVLDEADRML 250 (337)
Q Consensus 186 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~----~~~-~l~~~~~iViDEad~l~ 250 (337)
....++.++....+.........+.. +|++||...+. +++..+ ... ....+.++||||||.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y~~--dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAYAA--DIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHHHS--SEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHHhC--cccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999998886554444444 89999998774 344321 111 25788999999999765
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-10 Score=113.45 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.|.|+|..++..++.. ..+++.-++|.|||..+.+.+-..+.. . ...++|||||+ .|..|+...+.... +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g---~~~rvLIVvP~-sL~~QW~~El~~kF---~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-G---RAERVLILVPE-TLQHQWLVEMLRRF---N 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-C---CCCcEEEEcCH-HHHHHHHHHHHHHh---C
Confidence 4899999998776543 378999999999999887655554432 1 24579999998 78888776665432 3
Q ss_pred cEEEEEeCCccHHHHHH--HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc--cHHHHHHHHHHHcC
Q psy3143 191 VEVALSVGGLEVKVQES--VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE--HFASQMKEIIRLCS 266 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~--~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~--~~~~~~~~i~~~~~ 266 (337)
+...++.++........ ......+++|+|.+.+...-.....+.-..+++||+||||++-.. .-......+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 44443332221111000 111235899999887764211101122346899999999998521 10111222222222
Q ss_pred CCCeEEEEeecCch
Q psy3143 267 RTRQTMLFSATMTD 280 (337)
Q Consensus 267 ~~~q~i~~SAT~~~ 280 (337)
....++++|||+..
T Consensus 304 ~~~~~LLLTATP~q 317 (956)
T PRK04914 304 VIPGVLLLTATPEQ 317 (956)
T ss_pred ccCCEEEEEcCccc
Confidence 34468999999874
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=108.31 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=113.7
Q ss_pred HHHhCCCCCChHHHHHHHHHHhCCC--------CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 105 AIGALNYIYPTPIQAATIPVALLGR--------DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 105 ~l~~~~~~~p~~~Q~~~i~~~~~~~--------~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|++..-..-+.+|-+|+..+..-+ =+|--|.||||||++=.-.| ..| .....+.|..|-.--|.|..
T Consensus 400 ~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaL---sd~~~g~RfsiALGLRTLTL 475 (1110)
T TIGR02562 400 YFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YAL---RDDKQGARFAIALGLRSLTL 475 (1110)
T ss_pred hhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHh---CCCCCCceEEEEccccceec
Confidence 3433333445789999998876421 24556899999998743322 222 23345789999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHH-------------------------------------------Hhc--
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESV-------------------------------------------LRK-- 211 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-------------------------------------------~~~-- 211 (337)
|....+++-....+-..++++|+......... +..
T Consensus 476 QTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~ 555 (1110)
T TIGR02562 476 QTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDD 555 (1110)
T ss_pred cchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccCh
Confidence 99999988765556667777776544322110 000
Q ss_pred ------CCCEEEECcHHHHHHHhcC--CCCCCC----CccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecC
Q psy3143 212 ------CPDIVIATPGRLLDHLHNT--PSFSLS----DIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATM 278 (337)
Q Consensus 212 ------~~~Ilv~Tp~~l~~~l~~~--~~~~l~----~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~ 278 (337)
...|+|||+..++...... +...+. .-+.|||||+|.+-... ...+.+++..+ .....+++||||+
T Consensus 556 k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 556 KEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred hhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1379999999999877321 122111 13689999999764333 23344444432 2367899999999
Q ss_pred chhHHHHH
Q psy3143 279 TDAVNDLV 286 (337)
Q Consensus 279 ~~~~~~~~ 286 (337)
|+.+...+
T Consensus 635 P~~l~~~L 642 (1110)
T TIGR02562 635 PPALVKTL 642 (1110)
T ss_pred CHHHHHHH
Confidence 99976543
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=110.18 Aligned_cols=83 Identities=24% Similarity=0.164 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHH----HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH-HHHHHh
Q psy3143 112 IYPTPIQAATIPV----ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~l~ 186 (337)
-.+++-|.+.+.. +..++.+++.|+||+|||++|++|++.... ..+.+++|-++|+.|-.|+.. .+-.+.
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~-----~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK-----KKEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh-----ccCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 4689999986554 346778999999999999999999986653 135689999999999999865 233333
Q ss_pred hcc--CcEEEEEeCC
Q psy3143 187 QFT--SVEVALSVGG 199 (337)
Q Consensus 187 ~~~--~~~v~~~~~~ 199 (337)
+.. +++++++.|.
T Consensus 331 ~~~~~~~~~~~lKGr 345 (928)
T PRK08074 331 KIFPFPVEAALLKGR 345 (928)
T ss_pred HHcCCCceEEEEEcc
Confidence 222 3455555443
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=113.77 Aligned_cols=151 Identities=19% Similarity=0.317 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH-HHHHHhhccCcE
Q psy3143 115 TPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLAQFTSVE 192 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~l~~~~~~~ 192 (337)
.++|.++++.+.+. .++++++|+|||||.|+-++++. ...-.+++++.|..+.+..++. +-+++....|..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 88999999987654 58899999999999998777664 2357899999999999987754 555677778888
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-----HHHHHHHHHHHcCC
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-----FASQMKEIIRLCSR 267 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-----~~~~~~~i~~~~~~ 267 (337)
+..+.|..+.... +....+|+|+||.+.-.+ + ...++++.|.||+|.+.+.+ ....++.|..++-+
T Consensus 1218 ~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1218 IVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEK 1288 (1674)
T ss_pred EEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHh
Confidence 8888887765432 333348999999987654 2 36778999999999876432 11127777788888
Q ss_pred CCeEEEEeecCchh
Q psy3143 268 TRQTMLFSATMTDA 281 (337)
Q Consensus 268 ~~q~i~~SAT~~~~ 281 (337)
+.+++.+|..+.+.
T Consensus 1289 ~ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANA 1302 (1674)
T ss_pred heeEEEeehhhccc
Confidence 88888888887754
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=108.26 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=98.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
+|+++|.-. .+...+.-|+.+.||.|||+++.+|++-..+ .|..|-|++++..||.+-+.++..+..++|+.
T Consensus 76 r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs 147 (870)
T CHL00122 76 RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT 147 (870)
T ss_pred CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc
Confidence 477777554 4455677899999999999999999864443 36679999999999999999999999999999
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHH-----HHHHHhcC-CCCCCCCccEEEEecccccc
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGR-----LLDHLHNT-PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~-----l~~~l~~~-~~~~l~~~~~iViDEad~l~ 250 (337)
+++..++.........+. +||+++|..- |.+.+... .......+.+.||||+|.++
T Consensus 148 vg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999988877665544444 5999999964 34433211 11235678999999999865
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=104.97 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=100.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-+|+++|. +-.+.....-|+.+.||-|||+++.+|++-..+ .|..|-||+++.-||.+-+.++..+..++|+
T Consensus 84 ~r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 84 MRHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CCcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 34666664 444545567789999999999999998876554 3666999999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-----HHHHhcC-CCCCCCCccEEEEecccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-----LDHLHNT-PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~~-~~~~l~~~~~iViDEad~l~ 250 (337)
.|++..++....... ....+||++||+..| .+.+... .......+.+.||||+|.++
T Consensus 156 tvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999988776554433 344569999999877 5555432 22346788999999999865
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-09 Score=99.27 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=109.8
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 112 IYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
..+.++|.+.+.++. +|-+.|+.-.+|-|||+.. |.++..+.... +-.+..||++|-..|... +..+.+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~--~~~GPfLVi~P~StL~NW----~~Ef~r 238 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK--GIPGPFLVIAPKSTLDNW----MNEFKR 238 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc--CCCCCeEEEeeHhhHHHH----HHHHHH
Confidence 357899999888764 5668999999999999875 33444443211 224458999999888553 344444
Q ss_pred cc-CcEEEEEeCCccHHHH--HH-HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHH
Q psy3143 188 FT-SVEVALSVGGLEVKVQ--ES-VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263 (337)
Q Consensus 188 ~~-~~~v~~~~~~~~~~~~--~~-~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~ 263 (337)
++ ++.+.+++|....... .. .....++|+|+|.+..+.-- ..+.--.++|+||||||++=... ..+..+++
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr 313 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILR 313 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHHHHH
Confidence 43 5888888888644322 22 22346899999998877531 12333468999999999986554 45667777
Q ss_pred HcCCCCeEEEEeecCchhHHHHHH
Q psy3143 264 LCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 264 ~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
.+....++++....+.+++-++..
T Consensus 314 ~f~~~nrLLlTGTPLQNNL~ELWa 337 (971)
T KOG0385|consen 314 EFKTDNRLLLTGTPLQNNLHELWA 337 (971)
T ss_pred HhcccceeEeeCCcccccHHHHHH
Confidence 777677766555556666655543
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-08 Score=94.18 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
+.++..+...| +++|+..+.++. ++..-|+.-.+|-|||...+.. +..+..... --..+|||||.
T Consensus 196 ~~vPg~I~~~L--------f~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~k--~~~paLIVCP~ 264 (923)
T KOG0387|consen 196 FKVPGFIWSKL--------FPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHSGK--LTKPALIVCPA 264 (923)
T ss_pred ccccHHHHHHh--------hHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhccc--ccCceEEEccH
Confidence 55666665554 789999998765 4567899999999999874332 223322211 12569999997
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccH---------HHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEV---------KVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~---------~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
.+..|+.+.+..++. .++|..+++..+. ..... .......|+|+|...+.- ....+.-..+
T Consensus 265 -Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~---~~d~l~~~~W 338 (923)
T KOG0387|consen 265 -TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI---QGDDLLGILW 338 (923)
T ss_pred -HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc---cCcccccccc
Confidence 555676677776654 4677777765441 11111 111234799999765543 1123334568
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec-CchhHHHHHHh
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT-MTDAVNDLVSV 288 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT-~~~~~~~~~~~ 288 (337)
.|+|+||.|++=+.+- .+....+.++...++| +|.| +.+.+.++...
T Consensus 339 ~y~ILDEGH~IrNpns--~islackki~T~~RiI-LSGTPiQNnL~ELwsL 386 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPNS--KISLACKKIRTVHRII-LSGTPIQNNLTELWSL 386 (923)
T ss_pred cEEEecCcccccCCcc--HHHHHHHhccccceEE-eeCccccchHHHHHHH
Confidence 9999999999876652 3444444555455555 5555 55667666643
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=100.95 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=108.1
Q ss_pred ChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 114 PTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
++.||+..+.++. ++-|-|+.-..|-|||..-+..+.+........+ -.||||||-.+..+ .-.|++++ .
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWG---PHLIVVpTsviLnW-EMElKRwc--P 689 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWG---PHLIVVPTSVILNW-EMELKRWC--P 689 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCC---CceEEeechhhhhh-hHHHhhhC--C
Confidence 3679999988764 2348899999999999886444444433333333 37899999776543 33455555 3
Q ss_pred CcEEEEEeCCccHHH---HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC
Q psy3143 190 SVEVALSVGGLEVKV---QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~---~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~ 266 (337)
+++|..++|...... +.+.-.+.++|.|++...+.+-+. .|.-..+.|+||||||.+ .+|..+-|.-+-.++
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~---AFkrkrWqyLvLDEaqnI--KnfksqrWQAllnfn 764 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT---AFKRKRWQYLVLDEAQNI--KNFKSQRWQALLNFN 764 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH---HHHhhccceeehhhhhhh--cchhHHHHHHHhccc
Confidence 688888888754322 222333567999999887776443 455678999999999987 455566565555566
Q ss_pred CCCeEEEEeecCchhHHHHHH
Q psy3143 267 RTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 267 ~~~q~i~~SAT~~~~~~~~~~ 287 (337)
..+++++....+.+.+.++..
T Consensus 765 sqrRLLLtgTPLqNslmELWS 785 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMELWS 785 (1958)
T ss_pred hhheeeecCCchhhHHHHHHH
Confidence 566666655557777666543
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=99.27 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHHHhC-C--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 112 IYPTPIQAATIPVALL-G--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
..++|+|.+++..+.. | |.-+|..|.|+|||++-+-++.. + +.+||+++.+-.-+.|+...+..++..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i--------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I--------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e--------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 3578999999998874 3 47899999999999986554432 2 567999999999999999888887755
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-------CCCCCCCccEEEEecccccccccHHHHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-------PSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~~~~iViDEad~l~~~~~~~~~~~i 261 (337)
.+-.++.+..... .....++.|+|+|..++..--.+. ..+.-..+.++|+||+|.+...-|+..+.-+
T Consensus 372 ~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 5555555554322 223566789999987775321110 0112356889999999998877777766666
Q ss_pred HHHcCCCCeEEEEeecCchh
Q psy3143 262 IRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 262 ~~~~~~~~q~i~~SAT~~~~ 281 (337)
...+ .++++||+-.+
T Consensus 447 ~aHc-----KLGLTATLvRE 461 (776)
T KOG1123|consen 447 QAHC-----KLGLTATLVRE 461 (776)
T ss_pred HHHh-----hccceeEEeec
Confidence 5555 38899998755
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-08 Score=97.66 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHH---hCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 113 YPTPIQAATIPVA---LLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 113 ~p~~~Q~~~i~~~---~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.+++-|.+.+..+ +.+ +.++|.|+||+|||++|++|++..... .+.++||-+.|..|-.|+.
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-----~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-----EKKKLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-----cCCeEEEEcCCHHHHHHHH
Confidence 5688898865543 333 678899999999999999999876532 3567999999999999985
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-08 Score=95.36 Aligned_cols=137 Identities=19% Similarity=0.186 Sum_probs=94.3
Q ss_pred EcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHH
Q psy3143 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVL 209 (337)
Q Consensus 134 ~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~ 209 (337)
.+.+|||||..|+-.+-..+. .|..+||++|...|+.|+...++.... +..+..++++.+..... ...
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 344699999999887766663 366799999999999999999987542 25677788877655433 333
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccc-c--c--HHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLD-E--H--FASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~-~--~--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
.+...|+|||- ...| .+.++.+||+||-|.-.. + + |.-.=..+++....+..+|+.|||.+-+..
T Consensus 238 ~G~~~IViGtR---------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 238 RGQARVVVGTR---------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred CCCCcEEEEcc---------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 45579999992 2222 488999999999996322 1 1 211212234444568899999999886655
Q ss_pred HHHH
Q psy3143 284 DLVS 287 (337)
Q Consensus 284 ~~~~ 287 (337)
..+.
T Consensus 309 ~~~~ 312 (665)
T PRK14873 309 ALVE 312 (665)
T ss_pred HHHh
Confidence 4443
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-08 Score=88.27 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHhCCC-----CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVALLGR-----DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~-----~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
+-|+|.+.+-++.... .-|+.-..|.|||...+..++.-+ .+...||++|+.+|. |+.+.+.....
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-------~ra~tLVvaP~VAlm-QW~nEI~~~T~- 255 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-------DRAPTLVVAPTVALM-QWKNEIERHTS- 255 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------ccCCeeEEccHHHHH-HHHHHHHHhcc-
Confidence 4688999887766443 457788999999988765555433 345599999998874 55555555544
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CC------C-----CCCCc--cEEEEeccccccccc-
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PS------F-----SLSDI--EVLVLDEADRMLDEH- 253 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~------~-----~l~~~--~~iViDEad~l~~~~- 253 (337)
-..++..++|......-.... ++|++.+|...+-...+.. .. . .|.++ --||+||||.+-+..
T Consensus 256 gslkv~~YhG~~R~~nikel~--~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 256 GSLKVYIYHGAKRDKNIKELM--NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred CceEEEEEecccccCCHHHhh--cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 357777788766544333322 3599999998887665532 11 1 14444 469999999876532
Q ss_pred -HHHHHHHHHHHcCCCCeEEEEeecC-chhHHHHHH
Q psy3143 254 -FASQMKEIIRLCSRTRQTMLFSATM-TDAVNDLVS 287 (337)
Q Consensus 254 -~~~~~~~i~~~~~~~~q~i~~SAT~-~~~~~~~~~ 287 (337)
-...+..+.. ..-+++|.|+ .+.+.++..
T Consensus 334 nTArAV~~L~t-----t~rw~LSGTPLQNrigElyS 364 (791)
T KOG1002|consen 334 NTARAVFALET-----TYRWCLSGTPLQNRIGELYS 364 (791)
T ss_pred cHHHHHHhhHh-----hhhhhccCCcchhhHHHHHH
Confidence 2233332221 1235567774 345555443
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-08 Score=92.73 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 114 PTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
+.++|.-.+.++. .+-+.|+.-..|-|||... ++.+..|.... ..+..|||||...|-. |++++.+++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g---~~gpHLVVvPsSTleN----WlrEf~kwC 471 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG---NPGPHLVVVPSSTLEN----WLREFAKWC 471 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC---CCCCcEEEecchhHHH----HHHHHHHhC
Confidence 5688988887753 3447799999999999774 33444443322 2456899999987744 555555554
Q ss_pred -CcEEEEEeCCccHHHHHHH-Hh---cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 190 -SVEVALSVGGLEVKVQESV-LR---KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 190 -~~~v~~~~~~~~~~~~~~~-~~---~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
.++|..++|....+...+. +. ..++|+|+|.......-..+..+.-.++.++|+||+|.|=+.. ..++..++..
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I 550 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI 550 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc
Confidence 5788888887654433222 21 2579999997654321111111224568999999999764443 3444544432
Q ss_pred cCCCCeEEEEeec-CchhHHHHHHh
Q psy3143 265 CSRTRQTMLFSAT-MTDAVNDLVSV 288 (337)
Q Consensus 265 ~~~~~q~i~~SAT-~~~~~~~~~~~ 288 (337)
+.+.+ |++|.| +.+++.+++..
T Consensus 551 -~An~R-lLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 551 -NANFR-LLLTGTPLQNNLKELISL 573 (941)
T ss_pred -cccce-EEeeCCcccccHHHHHHH
Confidence 33444 555665 56777777663
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=92.85 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=84.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH-Hh----h----ccCcEEEEEeCCc
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LA----Q----FTSVEVALSVGGL 200 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-l~----~----~~~~~v~~~~~~~ 200 (337)
++.+.++||+|||.+|+-.++..... .+-.+.||+||+.+.-..+.+.+.. .. . ...+.+..+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~----~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK----YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH----cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 78899999999999998877665421 1246799999999988877766551 11 1 1123333333221
Q ss_pred -------cHHHH-HHHHhc------CCCEEEECcHHHHHHHhcCCC----------CC---CCCc-cEEEEecccccccc
Q psy3143 201 -------EVKVQ-ESVLRK------CPDIVIATPGRLLDHLHNTPS----------FS---LSDI-EVLVLDEADRMLDE 252 (337)
Q Consensus 201 -------~~~~~-~~~~~~------~~~Ilv~Tp~~l~~~l~~~~~----------~~---l~~~-~~iViDEad~l~~~ 252 (337)
+.... ..+... ..+|+|+|-+.|..-...... .. +... -+||+||.|++-..
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 11111 122221 478999999988653211001 11 2222 38999999998542
Q ss_pred cHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 253 HFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 253 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
+ .....| ..+++.+ ++.+|||++.
T Consensus 217 ~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 N--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred h--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 2 122334 4455444 5669999987
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=92.13 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=97.6
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+|+++|.-.--.+..| -|....||-|||+++.+|++-..+ .|..|-|++.+.-||..=..++..+..++|
T Consensus 76 G~r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL------~GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 76 GKRPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL------TGKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CCCcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh------cCCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 346788887666554444 479999999999999998865443 356688889999999999999999999999
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
+.|++...+.........+ .+||.+||..-| .++|+.+ .......+.|.||||+|.++
T Consensus 148 LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 148 LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999988776655544444 469999999765 3344321 11225678899999999865
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-07 Score=78.53 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcC---CCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYK---PRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+++.|.+|+..++.... .+|+||+|+|||....- ++..++.+ .....+.++|+++||...+..+...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47889999999999888 99999999999965433 33333111 1123577899999999999998888777
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-07 Score=91.74 Aligned_cols=74 Identities=27% Similarity=0.301 Sum_probs=58.3
Q ss_pred HhCCCCCChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 107 GALNYIYPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 107 ~~~~~~~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
..+....|++.|.+.+..+ ..++.+++.||||+|||++|++|++..... .+.+++|.++|+.|-.|+.+..
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-----~~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-----EGKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-----cCCcEEEECCCHHHHHHHHHhh
Confidence 3445667899999988543 345569999999999999999999988642 2367999999999998887765
Q ss_pred HHH
Q psy3143 183 RQL 185 (337)
Q Consensus 183 ~~l 185 (337)
..+
T Consensus 84 ~~~ 86 (654)
T COG1199 84 LPI 86 (654)
T ss_pred cch
Confidence 543
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=86.28 Aligned_cols=177 Identities=17% Similarity=0.124 Sum_probs=109.6
Q ss_pred ChHHHHHHHHHHhC---C-------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-CCeeEEEEcCCHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALL---G-------RDICGCAATGTGKTAAFMLPILERLLYKPRDD-QNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 114 p~~~Q~~~i~~~~~---~-------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~lil~Pt~~La~q~~~~~ 182 (337)
+.|+|.+.+.-+.. | ..+|+.-.+|+|||+..+..+...+-..+... .-.++|||+|. .|+..+.+.|
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF 317 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEF 317 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHH
Confidence 47999999876542 1 25778889999999987554444442222111 12679999997 6667777777
Q ss_pred HHHhhccCcEEEEEeCCccH--HHHHHHHh-----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEV--KVQESVLR-----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~--~~~~~~~~-----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
.++.....+....++|..+. ......+. -..-|++.+.+.+.++... +....++++|+||.|++=.. .
T Consensus 318 ~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 318 GKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch--h
Confidence 77665445666666666653 11111111 1125778888888766643 44678999999999986322 2
Q ss_pred HHHHHHHHHcCCCCeEEEEeecC-chhHHHHHH-hhCCCCeEEE
Q psy3143 256 SQMKEIIRLCSRTRQTMLFSATM-TDAVNDLVS-VSLTRPVRVF 297 (337)
Q Consensus 256 ~~~~~i~~~~~~~~q~i~~SAT~-~~~~~~~~~-~~~~~p~~i~ 297 (337)
..+...+..+.-.++ |++|.|+ .+++.+++. ..+-+|..+.
T Consensus 393 s~~~kaL~~l~t~rR-VLLSGTp~QNdl~EyFnlL~fvrP~~Lg 435 (776)
T KOG0390|consen 393 SLTLKALSSLKTPRR-VLLTGTPIQNDLKEYFNLLDFVRPGFLG 435 (776)
T ss_pred hHHHHHHHhcCCCce-EEeeCCcccccHHHHHHHHhhcChhhcc
Confidence 344445555554555 5567775 567777766 3344555544
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=88.61 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHh---CCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCC---CCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 115 TPIQAATIPVAL---LGR-DICGCAATGTGKTAAFMLPILERLLYKPRD---DQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 115 ~~~Q~~~i~~~~---~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+.||+..+.++. .++ +-|+|-..|-|||+..+-.+..-.+.+... ....-.|||||.. |+--+...+.+++.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf~p 1055 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKFFP 1055 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHhcc
Confidence 678999988753 233 889999999999998754444444333111 1233389999984 44444455555555
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~ 267 (337)
+ +++..+.|+...+...+.-.++.+|+|++.+.+.+-+.. +.-..+.|+|+||-|.+=+. ...+....+.+..
T Consensus 1056 f--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1056 F--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA 1128 (1549)
T ss_pred h--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHhh
Confidence 4 677777777666555444445579999999887643321 11235789999999976432 3455566666666
Q ss_pred CCeEEEEeec-CchhHHHHHHh
Q psy3143 268 TRQTMLFSAT-MTDAVNDLVSV 288 (337)
Q Consensus 268 ~~q~i~~SAT-~~~~~~~~~~~ 288 (337)
+.++|+ |.| +.+++.++...
T Consensus 1129 ~hRLIL-SGTPIQNnvleLWSL 1149 (1549)
T KOG0392|consen 1129 NHRLIL-SGTPIQNNVLELWSL 1149 (1549)
T ss_pred cceEEe-eCCCcccCHHHHHHH
Confidence 666664 666 55666666543
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=90.47 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=93.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+..+|+--+|||||+.....+ +.+... ...+.+++|+-++.|-.|+...+..+........ ...+.......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 468999999999999864433 334333 3578899999999999999999999876543322 23333334444
Q ss_pred HhcC-CCEEEECcHHHHHHHhcCCC-CCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 209 LRKC-PDIVIATPGRLLDHLHNTPS-FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 209 ~~~~-~~Ilv~Tp~~l~~~l~~~~~-~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
+... -.|+|||-+.+-..+..... ..-.+=-+||+||||+-- ++..-..+...++ +...++||.|+-..
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~ 416 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFK 416 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCcccc
Confidence 5533 38999999999887755311 112233478899999843 2222233333333 47889999997543
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=85.48 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=96.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-.+|.+|+|||||.+..-++-+.+. .+..++|+|.-++.|+.++...+..-.- .++....-.++.. .-
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~------i~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYI------ID 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccc------cc
Confidence 4578999999999987666555441 2467899999999999999888875321 1222111111111 01
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHH-------HHHHcCCCCeEEEEeecCchhH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE-------IIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~-------i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+-+++..+.|.+.. .-.+.++++|||||+-..+.+-|.+.++. +...+.....+|++-|++.+..
T Consensus 119 ~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 112366777766666643 22367899999999998776644433332 3344566778999999999999
Q ss_pred HHHHHhhCCC
Q psy3143 283 NDLVSVSLTR 292 (337)
Q Consensus 283 ~~~~~~~~~~ 292 (337)
.+++..+..+
T Consensus 195 vdFl~~~Rp~ 204 (824)
T PF02399_consen 195 VDFLASCRPD 204 (824)
T ss_pred HHHHHHhCCC
Confidence 8888875443
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=86.80 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcC----CCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+.+.|..++.++.-. ...|+....|-|||+..+..+++.-..+ ........+|||||- .|..|+...+..
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHHH
Confidence 468999999887632 3678899999999998766555543211 111112259999997 566777666666
Q ss_pred HhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHH----HHhcCCCC-CCC--CccEEEEecccccccc
Q psy3143 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLD----HLHNTPSF-SLS--DIEVLVLDEADRMLDE 252 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~----~l~~~~~~-~l~--~~~~iViDEad~l~~~ 252 (337)
.....-++|.+++|..........+ ..+||+|+|...+.. -+...+.. .|. .+..||+||||.+=+.
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 405 RLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 5556678899999876422222233 346999999876654 11111111 122 4678999999987544
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=74.00 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 114 PTPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
+++-|..++..++... -++++|+.|+|||.+. ..+...+.. .+.++++++||...+..+.+.. +.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-----~g~~v~~~apT~~Aa~~L~~~~-------~~ 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-----AGKRVIGLAPTNKAAKELREKT-------GI 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-----TT--EEEEESSHHHHHHHHHHH-------TS
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-----CCCeEEEECCcHHHHHHHHHhh-------Cc
Confidence 5788999999997544 4678899999999764 334444432 2578999999998877654431 11
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC---CCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC-
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT---PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR- 267 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~- 267 (337)
.. .|-..++...... ....+...++||||||-++. ...+..++...+.
T Consensus 69 ~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 EA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKS 120 (196)
T ss_dssp -E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-
T ss_pred ch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhc
Confidence 11 2222111111110 01115567899999999765 3455666666655
Q ss_pred CCeEEEEeec
Q psy3143 268 TRQTMLFSAT 277 (337)
Q Consensus 268 ~~q~i~~SAT 277 (337)
..++|++.=+
T Consensus 121 ~~klilvGD~ 130 (196)
T PF13604_consen 121 GAKLILVGDP 130 (196)
T ss_dssp T-EEEEEE-T
T ss_pred CCEEEEECCc
Confidence 6777777654
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=83.03 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
..+|+.|+..++.++-+++.|++|+|||....- ++..+........+.++++++||.-.|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 378999999999999999999999999986432 22222211111113679999999988887766655432211110
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCC-----CCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP-----SFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
. .......+-..|-.+|+....... .-+...+++||||||-++. ...+..+++.++...
T Consensus 224 --------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 000001122334333333211100 1123357999999998654 346667788888888
Q ss_pred eEEEEe
Q psy3143 270 QTMLFS 275 (337)
Q Consensus 270 q~i~~S 275 (337)
++|++.
T Consensus 288 rlIlvG 293 (586)
T TIGR01447 288 KLILLG 293 (586)
T ss_pred EEEEEC
Confidence 988876
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.4e-07 Score=89.07 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHh---HHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 112 IYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAF---MLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~---~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
..+..+|...+.+++ .+.++|+.-..|-|||..- +-.+++.. + ..+-.|||+|...+... -+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~----~--~~gpflvvvplst~~~W----~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL----Q--IHGPFLVVVPLSTITAW----ERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh----h--ccCCeEEEeehhhhHHH----HHH
Confidence 677899999887765 5679999999999999763 33333332 1 13347888898766543 333
Q ss_pred HhhccCcEEEEEeCCccHHHHHHHHh----c-----CCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 185 LAQFTSVEVALSVGGLEVKVQESVLR----K-----CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~~~~~~~~~----~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
+...+..++.+++|....+...+.+. . .++++++|.+.++.--. .+.--.+.++++||||+|-+..
T Consensus 439 f~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN~~-- 513 (1373)
T KOG0384|consen 439 FETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKNDE-- 513 (1373)
T ss_pred HHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCchH--
Confidence 33334688888888876554433221 2 37899999888765221 1222346899999999986443
Q ss_pred HHHHHHHHHcCCCCeEEEEeecCchhHHHHHHh-hCCCCeEEE
Q psy3143 256 SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV-SLTRPVRVF 297 (337)
Q Consensus 256 ~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~-~~~~p~~i~ 297 (337)
..+...+..+.-+.+++++...+.+.+.+|..+ .+-.|..+.
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~ 556 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFD 556 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCC
Confidence 334444555666667676666677888888753 233344433
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-07 Score=76.43 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH---HHH-HHhh
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ---VTR-QLAQ 187 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~---~~~-~l~~ 187 (337)
...+..|..++.+++...-+++.||.|||||+.++..+++.+.. +.-.+++|+-|..+....+-- .+. ++..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----TS-SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----CCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 34588999999999988889999999999999999999988854 224578888887654222100 000 0000
Q ss_pred ccC---cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 188 FTS---VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 188 ~~~---~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
+.. -....+++..... ..+ ....|-+..+. +++ ...+.+ .+||+|||+.+. ..++..++..
T Consensus 79 ~~~p~~d~l~~~~~~~~~~---~~~-~~~~Ie~~~~~----~iR---Grt~~~-~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 79 YLRPIYDALEELFGKEKLE---ELI-QNGKIEIEPLA----FIR---GRTFDN-AFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTHHHHHHHTTTS-TTCHH---HHH-HTTSEEEEEGG----GGT---T--B-S-EEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhChHhHH---HHh-hcCeEEEEehh----hhc---Cccccc-eEEEEecccCCC----HHHHHHHHcc
Confidence 000 0000000111111 111 22256666543 221 122332 899999999764 5677778888
Q ss_pred cCCCCeEEEEeec
Q psy3143 265 CSRTRQTMLFSAT 277 (337)
Q Consensus 265 ~~~~~q~i~~SAT 277 (337)
+..+++++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888999887654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.3e-06 Score=70.56 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH-----------HHH
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL-----------GVQ 177 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L-----------a~q 177 (337)
.++..-+..|...+..+..+..+++.|++|+|||+......++.++.. .-.+++|.=|+.+. .+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~----~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK----DVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 455667899999999998888889999999999999888777766431 13456666676532 222
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
+..++..+...+.. +.+... ....+. ..-.|-|.... +++. ..|. -.+||+|||+.+. ..
T Consensus 131 ~~p~~~pi~D~L~~----~~~~~~---~~~~~~~~~~~Iei~~l~----ymRG---rtl~-~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 131 FAPYFRPVYDVLVR----RLGASF---MQYCLRPEIGKVEIAPFA----YMRG---RTFE-NAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHH----HhChHH---HHHHHHhccCcEEEecHH----HhcC---Cccc-CCEEEEechhcCC----HH
Confidence 22222222211111 011111 111111 11245555432 3322 1233 3799999999765 46
Q ss_pred HHHHHHHHcCCCCeEEEEee
Q psy3143 257 QMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SA 276 (337)
++..++..+..++++|+..-
T Consensus 192 ~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHhhcCCCCEEEEeCC
Confidence 78888888888888887654
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-06 Score=76.63 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred ChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 114 PTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 114 p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
+.|+|...+...+ .|..+++.-.+|-|||..++.-+.-.. . ..-.||+||..-. ..+.+.+..+.... ..
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyr--a-----EwplliVcPAsvr-ftWa~al~r~lps~-~p 269 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYR--A-----EWPLLIVCPASVR-FTWAKALNRFLPSI-HP 269 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHh--h-----cCcEEEEecHHHh-HHHHHHHHHhcccc-cc
Confidence 4799999887665 567899999999999998754332222 1 2238999997543 33344444443222 22
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
+.++.++...... +-....|.|.+.+.|..+- . .+.-..+.++|+||.|.+-+.. ...++.+...+....++|
T Consensus 270 i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~-~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLH-D--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVI 342 (689)
T ss_pred eEEEecccCCccc---cccCCeEEEEEHHHHHHHH-H--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheE
Confidence 4444444321110 1122368888888776533 2 2334458999999999764433 445666666666667899
Q ss_pred EEeecCc
Q psy3143 273 LFSATMT 279 (337)
Q Consensus 273 ~~SAT~~ 279 (337)
++|.|..
T Consensus 343 LLSGTPa 349 (689)
T KOG1000|consen 343 LLSGTPA 349 (689)
T ss_pred EecCCcc
Confidence 9999964
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=81.54 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
.++|+.|+-..+.++-++|.|++|+|||....- ++..+... ......++++++||...|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~-~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQL-ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 589999999999999999999999999987432 22222211 11124579999999999888877665433222110
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCC-----CCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP-----SFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
. ........-..|-.+|+....... .-+.-.+++||||||-++- ...+..+++.++..+
T Consensus 230 ---~---------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 ---D---------EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred ---h---------hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 0 000000111233333332211110 1123356899999998653 456677888888889
Q ss_pred eEEEEee
Q psy3143 270 QTMLFSA 276 (337)
Q Consensus 270 q~i~~SA 276 (337)
++|++.=
T Consensus 294 rlIlvGD 300 (615)
T PRK10875 294 RVIFLGD 300 (615)
T ss_pred EEEEecc
Confidence 9888763
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=87.58 Aligned_cols=127 Identities=23% Similarity=0.267 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v 193 (337)
|+++| .+-.+...+.-|..+.||-|||+++.+|++-..+ .|..|=||+.+--||..=..++..+..++|+.|
T Consensus 139 ~ydVQ--LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL------~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtV 210 (1025)
T PRK12900 139 PYDVQ--LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNAL------TGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSV 210 (1025)
T ss_pred ccchH--HhhhHHhhcCCccccCCCCCcchHhHHHHHHHHH------cCCCcEEEeechHhhhhhHHHHHHHHHHhCCee
Confidence 45555 5555555666788999999999999999866654 345577888888999999999999999999999
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHH-----HHHHhcCC-CCCCCCccEEEEecccccc
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRL-----LDHLHNTP-SFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~~~-~~~l~~~~~iViDEad~l~ 250 (337)
+++..+....... -...+||.+||..-+ .+.+...+ ......+.|.||||+|.++
T Consensus 211 g~i~~~~~~~~Rr--~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 211 GVILNTMRPEERR--EQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eeeCCCCCHHHHH--HhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 9987665554433 345569999998644 33332211 1235678899999999865
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-06 Score=82.16 Aligned_cols=140 Identities=23% Similarity=0.166 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhCCC----CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 101 PLLKAIGALNYIYPTPIQAATIPVALLGR----DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 101 ~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~----~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
++..++.-..-..|+|+|+.|+..++.|= .-=+.+.+|+|||+..+- +.+.+- ..++|+++|+..|..
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala-------~~~iL~LvPSIsLLs 220 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA-------AARILFLVPSISLLS 220 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh-------hhheEeecchHHHHH
Confidence 44455555567789999999999988652 122345679999998754 444442 468999999999998
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHH--------------------H-----HHHHhcCCCEEEECcHHHHHHHhcCC
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKV--------------------Q-----ESVLRKCPDIVIATPGRLLDHLHNTP 231 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~--------------------~-----~~~~~~~~~Ilv~Tp~~l~~~l~~~~ 231 (337)
|..+....- +...++...++....... . ......+--|+++|.+.+...-...
T Consensus 221 QTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ- 298 (1518)
T COG4889 221 QTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ- 298 (1518)
T ss_pred HHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-
Confidence 865544321 112333333322211100 0 0011123468899988776544322
Q ss_pred CCCCCCccEEEEecccccc
Q psy3143 232 SFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 232 ~~~l~~~~~iViDEad~l~ 250 (337)
..-+..+++||.||||+-.
T Consensus 299 e~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HcCCCCccEEEecchhccc
Confidence 2237789999999999854
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.8e-06 Score=76.30 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=67.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-++|.|.+|||||+..+-.+... .....+.++++++++..|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l----~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL----QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh----hccccCCceEEEEecchHHHHHHHHHhhhccc---------------------
Confidence 46899999999998865443333 11124667999999999988877766653300
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-------HHHHHHHHHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-------FASQMKEIIRL 264 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-------~~~~~~~i~~~ 264 (337)
......+..|..+...+.. .......+++|||||||+|...+ ...++..+++.
T Consensus 58 -~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0002233344444333321 12346789999999999998731 24566666665
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=57.86 Aligned_cols=60 Identities=33% Similarity=0.373 Sum_probs=40.8
Q ss_pred HHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 121 TIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 121 ~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
++...+.+. -++|.||+|||||...+-.+...+. ..... +.++++++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~-~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLA-ARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHH-HhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344334444 4556999999999776554444442 11222 668999999999999888777
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-06 Score=84.74 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
.++-.+.+-.+...+.-|..+.||-|||+++.+|++-..+ .|..|-||+.+--||..=..++..+..++|+.|+
T Consensus 169 ~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL------~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNAL------TGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred cccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHH------cCCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 3444446666666677889999999999999999876665 3455778888889999999999999999999999
Q ss_pred EEeC-CccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 195 LSVG-GLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
++.. +.... .+.-...+||.+||..-+ .++|+.+ .......+.|.||||+|.+|
T Consensus 243 ~i~~~~~~~~--~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 243 CIDKHQPNSE--ARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ecCCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 8765 32333 333345579999998654 2333221 12235678999999999865
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=76.57 Aligned_cols=77 Identities=17% Similarity=0.036 Sum_probs=62.2
Q ss_pred HHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 105 AIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 105 ~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.+...++..+..-|..|+.+++...-.||.||+|+|||....--+++.+-. ..+.+|+++|+...+.|+...+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----cCCceEEEcccchhHHHHHHHHHh
Confidence 445567778899999999999999999999999999998876655555421 366799999999999998877765
Q ss_pred Hh
Q psy3143 185 LA 186 (337)
Q Consensus 185 l~ 186 (337)
.+
T Consensus 477 tg 478 (935)
T KOG1802|consen 477 TG 478 (935)
T ss_pred cC
Confidence 43
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-06 Score=79.90 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 114 PTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
+..+|.+.+.++. .|-+-|+.-..|-|||...+..+.+..-...- -+-.|||+|...|- +|...+++++
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nI---wGPFLVVtpaStL~----NWaqEisrFl 640 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNI---WGPFLVVTPASTLH----NWAQEISRFL 640 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccC---CCceEEeehHHHHh----HHHHHHHHhC
Confidence 3578888888765 46689999999999998875544443322221 23378888976663 4455555554
Q ss_pred -CcEEEEEeCCccHHHHHHH---------HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHH
Q psy3143 190 -SVEVALSVGGLEVKVQESV---------LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259 (337)
Q Consensus 190 -~~~v~~~~~~~~~~~~~~~---------~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~ 259 (337)
.+++..++|+.+.....+. ...+++|+|+|.+.++.--. .+.--.+.|+|+|||+.+-... .....
T Consensus 641 P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek---y~qkvKWQYMILDEAQAIKSSs-S~RWK 716 (1185)
T KOG0388|consen 641 PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK---YLQKVKWQYMILDEAQAIKSSS-SSRWK 716 (1185)
T ss_pred ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH---HHHhhhhhheehhHHHHhhhhh-hhHHH
Confidence 6889999998875544332 12457999999876543111 1112346899999999864333 34455
Q ss_pred HHHHHcCCCCeEEEEeecCc-hhHHHH
Q psy3143 260 EIIRLCSRTRQTMLFSATMT-DAVNDL 285 (337)
Q Consensus 260 ~i~~~~~~~~q~i~~SAT~~-~~~~~~ 285 (337)
.++...- +.-++++.|.- +.+.++
T Consensus 717 tLLsF~c--RNRLLLTGTPIQNsMqEL 741 (1185)
T KOG0388|consen 717 TLLSFKC--RNRLLLTGTPIQNSMQEL 741 (1185)
T ss_pred HHhhhhc--cceeeecCCccchHHHHH
Confidence 5554432 22366677754 444444
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-05 Score=77.54 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..+++.|..|+..+..++-+++.|++|+|||.... .++..+... +...++++++||...|..+.+. ++.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~---~~~~~v~l~ApTg~AA~~L~e~-------~g~ 390 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEEL---GGLLPVGLAAPTGRAAKRLGEV-------TGL 390 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHc---CCCceEEEEeCchHHHHHHHHh-------cCC
Confidence 46899999999999988999999999999998642 233333211 1125688899998887654322 111
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.... ..+.+...++ ..... . .-.....++||||||+++. ...+..+++.++...++
T Consensus 391 ~a~T---------ih~lL~~~~~-------~~~~~--~--~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rl 446 (720)
T TIGR01448 391 TAST---------IHRLLGYGPD-------TFRHN--H--LEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARL 446 (720)
T ss_pred cccc---------HHHHhhccCC-------ccchh--h--hhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEE
Confidence 1100 1111111100 00000 0 0012457899999999764 23456667778888888
Q ss_pred EEEee
Q psy3143 272 MLFSA 276 (337)
Q Consensus 272 i~~SA 276 (337)
|++.=
T Consensus 447 ilvGD 451 (720)
T TIGR01448 447 LLVGD 451 (720)
T ss_pred EEECc
Confidence 88753
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.4e-05 Score=66.74 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=110.2
Q ss_pred cCCCCHHHHHHHHhCCCCCChHHHHHHHHHHh----------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 95 QMNLSRPLLKAIGALNYIYPTPIQAATIPVAL----------LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 95 ~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
.+.|+..++.. | .++..|.+++-.+. .+.-+++--.||.||.....--+++.++. .+.|
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-----Gr~r 93 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-----GRKR 93 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-----CCCc
Confidence 34566554432 2 34788888876554 23467888899999998877667777652 2447
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC--CC-------
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF--SL------- 235 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~l------- 235 (337)
+|++..+..|-....+.++.++.. .+.+..+..-.. .....-.-.|+++|...|.......+.. .+
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 999999999999999999988744 333332221100 0001112369999998888765321111 11
Q ss_pred --CCccEEEEeccccccccc--------HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 236 --SDIEVLVLDEADRMLDEH--------FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 236 --~~~~~iViDEad~l~~~~--------~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
..=.+||+||||.+-+.. ....+..+...++.. +++-+|||-..+..++.
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep~Nma 228 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEPRNMA 228 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCCceee
Confidence 112489999999875432 234555566777644 58999999887766653
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=76.42 Aligned_cols=66 Identities=21% Similarity=0.153 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.+++.|..|+..++.. ..++|.||+|+|||....-.+.+.+. .+.++|+++||...+.++...+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999998876 57789999999999776544444442 245899999999999988887765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=73.93 Aligned_cols=65 Identities=25% Similarity=0.261 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
.+.+-|.+|+..+.+.++ .+++||+|+|||.....-+.+.+. .+.++|+..||...+..+...+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------cCCeEEEEcCchHHHHHHHHHhc
Confidence 357889999999888864 578999999999987766666653 35789999999999888877544
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00029 Score=65.36 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+.+++.||||+|||+...-.+......... .+.++.++. +.|.-+..+ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~--~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~----------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD--KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA----------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc--CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-----------
Confidence 467899999999998865433332221111 233444433 444444432 44444444444322
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCC-CeEEEEeecCch-hHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRT-RQTMLFSATMTD-AVN 283 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~-~q~i~~SAT~~~-~~~ 283 (337)
+.++..+...+.. +..+++||||++.++.... ....+..++...... ..++++|||... ++.
T Consensus 239 ----------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 ----------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1234445544433 4568999999999876432 234555555555433 456888999874 466
Q ss_pred HHHHhh
Q psy3143 284 DLVSVS 289 (337)
Q Consensus 284 ~~~~~~ 289 (337)
+.+..|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 666666
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=76.77 Aligned_cols=145 Identities=18% Similarity=0.305 Sum_probs=81.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc------CcEEEEEeCCccHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT------SVEVALSVGGLEVK 203 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~------~~~v~~~~~~~~~~ 203 (337)
++=|.+.||+|||.+|+-.|++.- +..+-.+-||+|||.+.-.-++...+.+.... +.+.-.+.-.....
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLh----k~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~ 151 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELH----KKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE 151 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHH----HHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH
Confidence 677899999999999976554431 11235679999999987666544444332221 23333332222222
Q ss_pred HHHHHHhcCCCEEEECcHHHHHH------Hh-----cCCCC--------CCCCc-cEEEEecccccccc-cHHHHHHHHH
Q psy3143 204 VQESVLRKCPDIVIATPGRLLDH------LH-----NTPSF--------SLSDI-EVLVLDEADRMLDE-HFASQMKEII 262 (337)
Q Consensus 204 ~~~~~~~~~~~Ilv~Tp~~l~~~------l~-----~~~~~--------~l~~~-~~iViDEad~l~~~-~~~~~~~~i~ 262 (337)
.........+.|++.|....-.- +. ..+.+ .+..+ -++|+||=|+|... .+...+..+
T Consensus 152 ~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~l- 230 (985)
T COG3587 152 KFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQL- 230 (985)
T ss_pred HHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHhh-
Confidence 22333345678888876554322 11 11100 02222 28999999999874 222333322
Q ss_pred HHcCCCCeEEEEeecCchhHH
Q psy3143 263 RLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 263 ~~~~~~~q~i~~SAT~~~~~~ 283 (337)
. +.-++=||||+++...
T Consensus 231 ---~-pl~ilRfgATfkd~y~ 247 (985)
T COG3587 231 ---N-PLLILRFGATFKDEYN 247 (985)
T ss_pred ---C-ceEEEEecccchhhhc
Confidence 1 2235678999998866
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.5e-06 Score=81.65 Aligned_cols=132 Identities=23% Similarity=0.299 Sum_probs=93.9
Q ss_pred CChHHHHHHHHHHhC-CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 113 YPTPIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
...|+|.+.+....+ ..++++-+|||+|||.+|-+.+...+.. .++.++++++|-.+|+..-...........++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~----~p~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY----YPGSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc----CCCccEEEEcCCchhhcccccchhhhcccCCc
Confidence 344566555543322 3478889999999999999988877643 34678999999999988766655554444478
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~ 251 (337)
++.-+.|....... .. ..++|+|+||.+.-...+++... .+.+++.+|+||.|++..
T Consensus 1003 k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1003 KVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred eeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 88777776654421 12 33599999999887776644332 378999999999998654
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.5e-06 Score=63.75 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=14.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++.++++|++|+|||......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 35678999999999998764433
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=76.74 Aligned_cols=74 Identities=23% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCCChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|..++|.|.+.+..+ ..++++++.+|||+|||++.+.|++.+....+ ...+++|.+.|..-..|+.+.++.+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---ccccEEEEcccchHHHHHHHHHHhh
Confidence 4555688998887654 46789999999999999999999998864322 2468999999999999999999986
Q ss_pred h
Q psy3143 186 A 186 (337)
Q Consensus 186 ~ 186 (337)
.
T Consensus 84 ~ 84 (705)
T TIGR00604 84 M 84 (705)
T ss_pred h
Confidence 4
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00037 Score=61.53 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=60.7
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
+-.+++++++||+|+|||........+.+ . .+.+++++ +..+|..++.....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~-----~g~~v~f~-~~~~L~~~l~~a~~--------------------- 154 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALI-E-----NGWRVLFT-RTTDLVQKLQVARR--------------------- 154 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHH-H-----cCCceeee-eHHHHHHHHHHHHh---------------------
Confidence 44678999999999999976544333333 1 23445555 34455444321100
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
+ .+...++.. +.++++|||||.+...... ....+..++........+|+.|-..+..+.
T Consensus 155 ---------~---~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 155 ---------E---LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWN 214 (269)
T ss_pred ---------C---CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH
Confidence 0 122222221 3457899999999764433 334555555544334566666655555444
Q ss_pred H
Q psy3143 284 D 284 (337)
Q Consensus 284 ~ 284 (337)
.
T Consensus 215 ~ 215 (269)
T PRK08181 215 R 215 (269)
T ss_pred H
Confidence 3
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.3e-05 Score=73.32 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=95.9
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEEEEEeCCcc
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEVALSVGGLE 201 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v~~~~~~~~ 201 (337)
..+...+-+++-+.||+|||..+...+++.++.+.... -..+.+..|+|-.+..+.+.+. .-+...+-.++. +
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~-~~na~v~qprrisaisiaerva~er~e~~g~tvgy-----~ 461 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA-SFNAVVSQPRRISAISLAERVANERGEEVGETCGY-----N 461 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc-cccceeccccccchHHHHHHHHHhhHHhhcccccc-----c
Confidence 34445566789999999999999999999987655432 3457888899988887765443 333222222222 1
Q ss_pred HHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 202 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+.........--|++||-+-+++.+.+. +.-+.++|+||.|..--. .|...+.+=+....+...+++||||+..
T Consensus 462 vRf~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 462 VRFDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred ccccccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 11111111222269999999999988763 667889999999964333 2444444333344556667777777765
Q ss_pred h
Q psy3143 281 A 281 (337)
Q Consensus 281 ~ 281 (337)
+
T Consensus 538 d 538 (1282)
T KOG0921|consen 538 D 538 (1282)
T ss_pred h
Confidence 4
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.3e-05 Score=68.47 Aligned_cols=70 Identities=24% Similarity=0.184 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+|+-|.+++.. ..++++|.|..|||||.+.+.-++..+.... ....++|++++|+..|..+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 36789999887 6789999999999999987666665554332 3467899999999999999988888653
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.7e-05 Score=76.49 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=80.3
Q ss_pred CCCCChHHHHHHHHHHhC---C-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVALL---G-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~---~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
....+.+||...+.++.+ + -+-|+.-.+|-|||.+-+. ++..++...+. .+--||+||+-.|.....+ +..+
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~--~GP~LvivPlstL~NW~~E-f~kW 466 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQM--QGPFLIIVPLSTLVNWSSE-FPKW 466 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHccc--CCCeEEeccccccCCchhh-cccc
Confidence 445678999999988652 3 3788999999999987533 33333322221 2337889999988765433 2222
Q ss_pred hhccCcEEEEEeCCccH---HHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 186 AQFTSVEVALSVGGLEV---KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 186 ~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
+. .+... .+.|... ..+.+.....++|+++|.+.+.. ....+.--++.|+||||.|+|-.
T Consensus 467 aP--Sv~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 467 AP--SVQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cc--ceeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc
Confidence 21 23333 3333322 22234445678999999776554 11112233567999999999854
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=69.44 Aligned_cols=204 Identities=10% Similarity=-0.084 Sum_probs=131.6
Q ss_pred HHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 106 IGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 106 l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
+..+.......+|..++..+..|+++++...|.+||.++|.+.....++.-+ ....+++.|+.+++....+.+.-.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH----ATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc----ccceecchhHHHHhhccCCceEEE
Confidence 4455666678999999999999999999999999999999888777665333 334788999999877654332211
Q ss_pred hh---ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CC--CCCCCccEEEEecccccccc---cHHH
Q psy3143 186 AQ---FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PS--FSLSDIEVLVLDEADRMLDE---HFAS 256 (337)
Q Consensus 186 ~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~--~~l~~~~~iViDEad~l~~~---~~~~ 256 (337)
.. ...-.++-.+.+..........+.+.+++++.|......+.-. .. ..+-...++++||+|.++.. ....
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 11 1111233334454555555666777899999998876644321 11 11334678999999976532 2445
Q ss_pred HHHHHHHHc-----CCCCeEEEEeecCchhHHHHHHhhC-CCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 257 QMKEIIRLC-----SRTRQTMLFSATMTDAVNDLVSVSL-TRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 257 ~~~~i~~~~-----~~~~q~i~~SAT~~~~~~~~~~~~~-~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
+++++.+.+ +.+.|++-.|||+.+.++-....+- ..-..|..+ ..+.+-+++.++=.
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP 497 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNP 497 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCC
Confidence 566665544 5678999999999988766554433 333444433 33444455555543
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=62.29 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHHHH----------HHhhCCCCeEEEeCCC
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDL----------VSVSLTRPVRVFVDNN 301 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~----------~~~~~~~p~~i~~~~~ 301 (337)
+..+++|||||++.+.... ....+..++........+|+.|...+...... +...+.+...|.+...
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCC
Confidence 3457899999999764322 23344455443322345777777665554332 3444555666665543
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=61.07 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh-hcc
Q psy3143 114 PTPIQAATIPVALL---GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA-QFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~-~~~ 189 (337)
.++.|.+....+.+ |++.+....+|.|||.+ ++|++..++... ..-+.+++| ++|..|....+.... .-.
T Consensus 24 iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg----~~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 24 IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG----SRLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC----CcEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 57889998888775 57999999999999987 577777776432 235666666 479999988888644 333
Q ss_pred CcEEEEE--eCCccHH-----HHHH---HHhcCCCEEEECcHHHHHHH
Q psy3143 190 SVEVALS--VGGLEVK-----VQES---VLRKCPDIVIATPGRLLDHL 227 (337)
Q Consensus 190 ~~~v~~~--~~~~~~~-----~~~~---~~~~~~~Ilv~Tp~~l~~~l 227 (337)
+-++..+ ....... .... .....-.|+++||+.++.+.
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 4444333 2222211 1111 11223479999999887643
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00064 Score=67.71 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHhC---CCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 97 NLSRPLLKAIGAL---NYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 97 ~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.++..++..|+-. |+..++..-.+.+.... .|-.+|+.--.|-|||+..+.. ++.++.... -.-.++|||+|-
T Consensus 660 qV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtf-lhTvL~c~k-lg~ktaLvV~Pl 737 (1567)
T KOG1015|consen 660 QVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTF-LHTVLLCDK-LGFKTALVVCPL 737 (1567)
T ss_pred hccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHH-HHHHHHhhc-cCCceEEEEcch
Confidence 3555566555432 44444444444444432 1346777778999999986544 444432222 235689999998
Q ss_pred HHHHHHHHHHHHHHhhc----cCcEEEEEeCCccHH---HHHHHHhcCCCEEEECcHHHHHHHhcCCCCC----------
Q psy3143 172 RELGVQVYQVTRQLAQF----TSVEVALSVGGLEVK---VQESVLRKCPDIVIATPGRLLDHLHNTPSFS---------- 234 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~~---~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~---------- 234 (337)
..+.+ +++.|.++... -.+.|..+..-.... .....|...-.|.|.-...+..+....+.-.
T Consensus 738 Nt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~ 816 (1567)
T KOG1015|consen 738 NTALN-WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKA 816 (1567)
T ss_pred HHHHH-HHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHh
Confidence 66544 44555555442 134444332222211 1122333333566655555554433221111
Q ss_pred --CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHH
Q psy3143 235 --LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDL 285 (337)
Q Consensus 235 --l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~ 285 (337)
-..-++||+||+|.+-... ..+...+..+...+++++....|.+++.+.
T Consensus 817 lvdpGPD~vVCDE~HiLKNek--sa~Skam~~irtkRRI~LTGTPLQNNLmEY 867 (1567)
T KOG1015|consen 817 LVDPGPDFVVCDEGHILKNEK--SAVSKAMNSIRTKRRIILTGTPLQNNLMEY 867 (1567)
T ss_pred ccCCCCCeEEecchhhhccch--HHHHHHHHHHHhheeEEeecCchhhhhHHH
Confidence 1235799999999764432 222222222333455555444456665554
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=62.74 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc---hhHHHHHHhhCC
Q psy3143 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT---DAVNDLVSVSLT 291 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~---~~~~~~~~~~~~ 291 (337)
.....++.||+||||.|...-| ..+.+.+...+...++++....+. ..+..-+.+|.-
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred CCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 3466789999999999876654 566667777777778887776654 334444444443
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=74.93 Aligned_cols=169 Identities=20% Similarity=0.149 Sum_probs=100.7
Q ss_pred CCChHHHHHHHHHHh-----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 112 IYPTPIQAATIPVAL-----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..+.++|...+.++. .+.+.+++...|.|||+..+..+.+.+. ... ...+.++|++|+..+ .++...+.++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~-~~~-~~~~~~liv~p~s~~-~nw~~e~~k~~ 413 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLE-SIK-VYLGPALIVVPASLL-SNWKREFEKFA 413 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhh-ccc-CCCCCeEEEecHHHH-HHHHHHHhhhC
Confidence 445778888887754 2567888899999999987666555221 111 114679999998554 44555555555
Q ss_pred hccCcEEEEEeCCcc-----HHHHHHHHhcC----CCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH
Q psy3143 187 QFTSVEVALSVGGLE-----VKVQESVLRKC----PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~----~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~ 257 (337)
..... +...+|... ........... .+++++|.+.+.........+.-..+.++|+||||.+-... ...
T Consensus 414 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~ 491 (866)
T COG0553 414 PDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSE 491 (866)
T ss_pred ccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHH
Confidence 43332 556666554 22222233322 68999999988884322223445568899999999954332 122
Q ss_pred HHHHHHHcCCCCeEEEEeecC-chhHHHHHH
Q psy3143 258 MKEIIRLCSRTRQTMLFSATM-TDAVNDLVS 287 (337)
Q Consensus 258 ~~~i~~~~~~~~q~i~~SAT~-~~~~~~~~~ 287 (337)
-..+. .++...+ +++|.|+ .+.+.++..
T Consensus 492 ~~~l~-~~~~~~~-~~LtgTPlen~l~eL~s 520 (866)
T COG0553 492 GKALQ-FLKALNR-LDLTGTPLENRLGELWS 520 (866)
T ss_pred HHHHH-HHhhcce-eeCCCChHhhhHHHHHH
Confidence 22222 3333333 6677776 455555544
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=71.59 Aligned_cols=127 Identities=21% Similarity=0.236 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v 193 (337)
|+.+| .+-.+.....-++-..||-|||++..+|+.-..+ .+..+.+++..--||..-..++..+..+.++.+
T Consensus 81 ~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 44455 5555666677888999999999999999866554 355688888999999999999999999999999
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
++...+.........+. +||.++|-..| .+++.-+ .......+.|.|+||+|.++
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99998887665555544 59999998655 2222211 11125568899999999765
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00046 Score=62.07 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=84.0
Q ss_pred CCCCCChHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 109 LNYIYPTPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|+..-...|..|+.+++... =|.+.|..|||||+.++.+.++..+.+.. -.++|+.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---y~KiiVtRp~vpvG~dI-------- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---YRKIIVTRPTVPVGEDI-------- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---hceEEEecCCcCccccc--------
Confidence 477777889999999988664 35688999999999998888887764442 33577777876553221
Q ss_pred hccCcEEEEEeCCccHH--HHHHHHhcC----CCEEEECcHHHHHHHhcCCCCC---CC-----C--ccEEEEecccccc
Q psy3143 187 QFTSVEVALSVGGLEVK--VQESVLRKC----PDIVIATPGRLLDHLHNTPSFS---LS-----D--IEVLVLDEADRML 250 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~--~~~~~~~~~----~~Ilv~Tp~~l~~~l~~~~~~~---l~-----~--~~~iViDEad~l~ 250 (337)
+.+-|....+ .+.+.+..+ ...==|+.+.|...+.+ +.+. +. + =.|||||||+.+-
T Consensus 293 -------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 293 -------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred -------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC
Confidence 1111111100 000000000 00001122222222221 1111 11 1 1599999999875
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
.+.+.-|+..+....+++++.
T Consensus 365 ----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----HHHHHHHHHhccCCCEEEEcC
Confidence 678888999998888888765
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00077 Score=61.37 Aligned_cols=131 Identities=20% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC--H-HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT--R-ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt--~-~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
+-++++|++|+|||+...-.+ ..+.. .+.+++++... | ....|+..... ..++.+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~-----~g~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~~~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK-----NGFSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIKHKYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH-----cCCeEEEecCCcCcHHHHHHHHHHHH----HcCCceecccCCC-----
Confidence 357789999999998754433 23321 23456665532 2 33344433333 3334432211111
Q ss_pred HHHHhcCCCEEEECcHH-HHHHHhcCCCCCCCCccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 206 ESVLRKCPDIVIATPGR-LLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~-l~~~l~~~~~~~l~~~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
.|.. +.+.+.. .....+++|+||.|.++. +..+...+..+.+...+...+++++||...+..
T Consensus 206 -------------dp~~v~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 -------------DPAAVAYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred -------------CHHHHHHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 1122211 012346799999999876 345677888888878778888899999887766
Q ss_pred HHHHhhC
Q psy3143 284 DLVSVSL 290 (337)
Q Consensus 284 ~~~~~~~ 290 (337)
+.+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=61.34 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC---HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT---RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt---~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
.-.++.||+|+|||...+-.+..... .+.+++++-|. +....+ +....++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~----------- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE----------- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEeccccccccCCc-------EecCCCCccc-----------
Confidence 34688999999999876554444431 25578888663 221111 1111111110
Q ss_pred HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
.+.+..+..++..+.. .-.++++|||||||.+.. .++..+++.+......+++++-
T Consensus 59 --------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 --------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred --------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEec
Confidence 1223455555555533 234688999999986422 3345555553333334444443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00056 Score=62.97 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=82.7
Q ss_pred ccccCCCCHHHHHHHHhC-C----CCCC---hHHHHHHHHH----H-------hCCCCEEEEcCCCCchhHHhHHHHHHH
Q psy3143 92 SFHQMNLSRPLLKAIGAL-N----YIYP---TPIQAATIPV----A-------LLGRDICGCAATGTGKTAAFMLPILER 152 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~-~----~~~p---~~~Q~~~i~~----~-------~~~~~~lv~a~TGsGKT~~~~~~~l~~ 152 (337)
.+...|+++.+.+.|-.. . ...+ ..+....+.. + ..|+.+++.||||+|||+.....+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356678888888877442 1 1112 2222222211 1 125578899999999999865544433
Q ss_pred hhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC
Q psy3143 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232 (337)
Q Consensus 153 l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 232 (337)
+... ...++.++. +...-.--.+.++.++...++.+. .+.+++.+...+..
T Consensus 162 ~~~~----G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~---------------------~~~~~~~l~~~l~~--- 212 (374)
T PRK14722 162 VMRF----GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH---------------------AVKDGGDLQLALAE--- 212 (374)
T ss_pred HHhc----CCCeEEEEe-cccccccHHHHHHHHHHHcCCceE---------------------ecCCcccHHHHHHH---
Confidence 3211 012344333 222211112334444443344332 23344444444433
Q ss_pred CCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCchh-HHHHHHhh
Q psy3143 233 FSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDA-VNDLVSVS 289 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~~-~~~~~~~~ 289 (337)
+.+.++|+||.+-..... .....+..+.........++++|||...+ +.+.+..|
T Consensus 213 --l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 --LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred --hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 445688999988754322 23334443333223334577889988654 44455544
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=62.84 Aligned_cols=89 Identities=25% Similarity=0.343 Sum_probs=63.8
Q ss_pred CCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCC-ccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCC
Q psy3143 158 RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG-LEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSL 235 (337)
Q Consensus 158 ~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~-~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l 235 (337)
...+.|.+|||+.+--=|..+.+.++.+. ..+..|+.++.. .....+...+. ..++|.||||+||..++.+ +.+.+
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l 199 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSL 199 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCc
Confidence 34457889999988655666666665542 112445555544 36677777776 4689999999999999966 58889
Q ss_pred CCccEEEEecccc
Q psy3143 236 SDIEVLVLDEADR 248 (337)
Q Consensus 236 ~~~~~iViDEad~ 248 (337)
+.+.+||||--|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 9999999997553
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0003 Score=65.17 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHH------hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 114 PTPIQAATIPVA------LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 114 p~~~Q~~~i~~~------~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
+++-|+.++..+ ..+..+++.|+-|+|||..+-. +.+.+ .. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~-~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYL-RS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHh-cc----ccceEEEecchHHHHHhc
Confidence 467788888877 6778999999999999976422 22332 11 356799999998777665
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=51.77 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++.+++.|++|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999997543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00043 Score=68.46 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhc------------CC-------CC---------
Q psy3143 112 IYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLY------------KP-------RD--------- 159 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------------~~-------~~--------- 159 (337)
.+|++.|...+..++ ...+.++.+|||+|||++.+-..+.+... +. ..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 357888887776655 45689999999999999875444443310 00 00
Q ss_pred --------CCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 160 --------DQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 160 --------~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
-..+++.|-.-|..-..|+.+.+++..
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 014577888888888888888888755
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=69.73 Aligned_cols=125 Identities=21% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..++.-|++|+-.++.-+| .+|.|-+|+|||......+ ..|+ ..+.++|+.+-|...+..+.-.++.+.
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~-----~~gkkVLLtsyThsAVDNILiKL~~~~---- 737 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILV-----ALGKKVLLTSYTHSAVDNILIKLKGFG---- 737 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHH-----HcCCeEEEEehhhHHHHHHHHHHhccC----
Confidence 3567899999999888775 6789999999998754322 2222 137789999999888777665555433
Q ss_pred cEEEEE---------------eCCccHHHH--HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 191 VEVALS---------------VGGLEVKVQ--ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 191 ~~v~~~---------------~~~~~~~~~--~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
+.+.-+ ..+.+.+.. .....+.+.|+.||=-.+ +++.|..+.++|.|||||-.++.
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccCEEEEcccccccc
Confidence 221111 111111111 112234568998883222 23445567799999999998753
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=68.26 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+++-|..|+..++.+++ +++.|+.|+|||.+ +-.+...+. ..+.+++.++||--.|..+.. ..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----~~G~~V~~~ApTGkAA~~L~e-------~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----AAGYEVRGAALSGIAAENLEG-------GSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----HcCCeEEEecCcHHHHHHHhh-------ccC
Confidence 3579999999999998764 67999999999986 333444432 136689999999776654321 112
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~ 269 (337)
+.. .|-..|+.-... +...+...++||||||-++... .+..+++.. ....
T Consensus 412 i~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~ga 462 (988)
T PRK13889 412 IAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGA 462 (988)
T ss_pred cch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCC
Confidence 211 121222111111 1223567789999999966533 334444433 4566
Q ss_pred eEEEEeec
Q psy3143 270 QTMLFSAT 277 (337)
Q Consensus 270 q~i~~SAT 277 (337)
++|++.=+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 77776533
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=66.40 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+++-|..|+..++.+ +-+++.|++|+|||...- .+...+. . .+.++++++||--.|..+.. .++
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~-~----~g~~V~~~ApTg~Aa~~L~~-------~~g 417 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWE-A----AGYRVIGAALSGKAAEGLQA-------ESG 417 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHH-h----CCCeEEEEeCcHHHHHHHHh-------ccC
Confidence 34789999999998874 567899999999997643 3333332 1 25679999999776654431 122
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH-cCCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL-CSRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~-~~~~~ 269 (337)
+... |-.+++..+.. +...+...++||||||-++....+ ..++.. .....
T Consensus 418 ~~a~------------------------Ti~~~~~~~~~-~~~~~~~~~llIvDEasMv~~~~~----~~Ll~~~~~~~~ 468 (744)
T TIGR02768 418 IESR------------------------TLASLEYAWAN-GRDLLSDKDVLVIDEAGMVGSRQM----ARVLKEAEEAGA 468 (744)
T ss_pred Ccee------------------------eHHHHHhhhcc-CcccCCCCcEEEEECcccCCHHHH----HHHHHHHHhcCC
Confidence 2111 11112111111 122356789999999997653333 334442 23466
Q ss_pred eEEEEe
Q psy3143 270 QTMLFS 275 (337)
Q Consensus 270 q~i~~S 275 (337)
++|++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 777766
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0027 Score=58.51 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+.+.+.||||+|||......+.... ..+.++.++. |.|.-+.. .++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~------~~GkkVglI~aDt~RiaAvE---QLk~yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH------GKKKTVGFITTDHSRIGTVQ---QLQDYVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH------HcCCcEEEEecCCcchHHHH---HHHHHhhhcCCcE-------------
Confidence 4678999999999987655444332 1234455444 33422222 1222222222221
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCc-hhHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT-DAVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~-~~~~~ 284 (337)
+.+.+|..+.+.+... -....+++|+||-+=+..... ....+..+++...+..-++.+|||.. .++.+
T Consensus 300 --------~v~~d~~~L~~aL~~l--k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHH--HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 2234666666655431 011247899999887654332 33444555554444445667888765 45566
Q ss_pred HHHhhC
Q psy3143 285 LVSVSL 290 (337)
Q Consensus 285 ~~~~~~ 290 (337)
.+..|-
T Consensus 370 i~~~F~ 375 (436)
T PRK11889 370 IITNFK 375 (436)
T ss_pred HHHHhc
Confidence 665543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0027 Score=51.09 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=25.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
++++|++|+|||......+..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcch
Confidence 679999999999876554444331 35567777655443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0048 Score=58.27 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
++.+++.||||+|||+...-.+....... .+.++.++. |.|.-+. ..+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~------------ 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPV------------ 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEECCccHHHHH---HHHHHHHHHhCCce------------
Confidence 45688999999999987654333322011 133454443 3333222 23333333223322
Q ss_pred HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHc-CCCCeEEEEeecCch-hH
Q psy3143 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLC-SRTRQTMLFSATMTD-AV 282 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~-~~ 282 (337)
..+.++..+...+.. +..+++||||-+-+... ......+..++... .+....+++|||... ++
T Consensus 282 ---------~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred ---------EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH
Confidence 222345555555543 34578999998865332 22334555555522 233457788998875 45
Q ss_pred HHHHHhhC
Q psy3143 283 NDLVSVSL 290 (337)
Q Consensus 283 ~~~~~~~~ 290 (337)
.+.+..|-
T Consensus 348 ~~~~~~f~ 355 (424)
T PRK05703 348 KDIYKHFS 355 (424)
T ss_pred HHHHHHhC
Confidence 55555443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00054 Score=53.47 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
++.+++.||+|+|||......+ ..+. . ....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~-~----~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELG-P----PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccC-C----CCCCEEEECCEEcc
Confidence 5678999999999998754433 2221 0 11247777766543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0048 Score=53.67 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=30.8
Q ss_pred CCCccEEEEecccccccccHHH-HHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFAS-QMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~-~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
+.++++|||||++......|.. .+..|+... .....+|+.|---+.++..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 4568899999999876554544 344455433 3356677766655555443
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00049 Score=64.60 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
|+--|-+||..+..| +.-.+-|.||||||+... .++..+ +.-+||++|++.||-|.+..++.+...
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~--------~rPtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKV--------QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHh--------CCCeEEEecchhHHHHHHHHHHHhCcC
Confidence 455566666555433 477889999999998753 344443 334999999999999999999998755
Q ss_pred cCcE
Q psy3143 189 TSVE 192 (337)
Q Consensus 189 ~~~~ 192 (337)
..+.
T Consensus 84 NaVE 87 (663)
T COG0556 84 NAVE 87 (663)
T ss_pred cceE
Confidence 4433
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0062 Score=56.06 Aligned_cols=131 Identities=21% Similarity=0.329 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
++-+.+.||||.|||+...-.+....+.. +...-+||.+-|-=.+ .++.++.++.-+++.+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv----------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVV----------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---cCcceEEEEeccchhh--HHHHHHHHHHHhCCceEEe-----------
Confidence 67788999999999987543333332111 1233456666553322 1234455555555555444
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCch-hHHHH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTD-AVNDL 285 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~~ 285 (337)
-+|.-|...+.. +.++++|.+|=+=+-. +......+..+........-.+.+|||... ++...
T Consensus 267 ----------~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 267 ----------YSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred ----------cCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 344444444432 4445566666554321 122344555555544444445666777653 34555
Q ss_pred HHhh
Q psy3143 286 VSVS 289 (337)
Q Consensus 286 ~~~~ 289 (337)
+..|
T Consensus 332 ~~~f 335 (407)
T COG1419 332 IKQF 335 (407)
T ss_pred HHHh
Confidence 5443
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0093 Score=52.81 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCchhHH
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~ 283 (337)
+.+.++||||+++..-... ....+..|+... ....++|+.|...+.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4457899999996432222 233444454433 344567766665555544
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0029 Score=61.35 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc-
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV- 191 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~- 191 (337)
.+.++|...+..+..++-.++..+-..|||.+....++...+.. .+..+++++|++..|..+++.++.+....+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----KDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 46899999998876677778889999999998876555444332 2458999999999999998888766543221
Q ss_pred -EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC--C
Q psy3143 192 -EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR--T 268 (337)
Q Consensus 192 -~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~--~ 268 (337)
........ . ..-.+.++..|.+.|.. .....=.+..++|+||+|.+-+. ...+..+...+.. .
T Consensus 135 ~~~~i~~~~-~---~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEWN-K---GSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeecC-c---cEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCC
Confidence 11100000 0 01112344455454421 11112234678999999976542 2233333333322 2
Q ss_pred CeEEEEeecC
Q psy3143 269 RQTMLFSATM 278 (337)
Q Consensus 269 ~q~i~~SAT~ 278 (337)
.+++++|.+-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4566666553
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.014 Score=53.20 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCCccEEEEecccccccccH-HHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHF-ASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~-~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+.++++||||+........| ...+..++... ....++|+.|..-+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44578999999987644433 34455555443 33455655454444444
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0092 Score=52.74 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=24.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+.+++++|++|+|||.... .+...+..+ .+..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~----~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK----KGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh----cCceEEEEE
Confidence 35689999999999997653 334444321 134566654
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0089 Score=59.50 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
..++++||||+|.|....| +.+.++++.-+.+..+|+ ++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FIL-aTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFIL-ATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEE-EECCh
Confidence 4679999999998865554 344445555454555444 44433
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.008 Score=50.57 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=68.6
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+++.||||+|||....-.+...... +.++.+++ ..|.=|.. .++.+++..++.+.......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~-------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK------GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTES-------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTS--------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc------cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcch--------
Confidence 6789999999999865544444322 22333333 44544433 34444444455544322111
Q ss_pred HhcCCCEEEECcHHHH-HHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 209 LRKCPDIVIATPGRLL-DHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~-~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.|..+. +.+.. ...+++++|+||=+-+... ......+..++....+..-.+++|||...+-...+
T Consensus 67 ----------~~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 67 ----------DPAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp ----------CHHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred ----------hhHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 122222 22221 1123467888888876443 23556777777777666677888999887644333
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 134 ~ 134 (196)
T PF00448_consen 134 L 134 (196)
T ss_dssp H
T ss_pred H
Confidence 3
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.03 Score=48.89 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=35.7
Q ss_pred CCCccEEEEecccccccccH-HHHHHHHHHHc-CCCCeEEEEeecCchhHHH-----HHHhhCC-CCeEEEeCCCc
Q psy3143 235 LSDIEVLVLDEADRMLDEHF-ASQMKEIIRLC-SRTRQTMLFSATMTDAVND-----LVSVSLT-RPVRVFVDNNH 302 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~-~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~-----~~~~~~~-~p~~i~~~~~~ 302 (337)
+.++++|||||+.......+ ...+..|+... .....+|+.|---..++.. +...... ....|.....+
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 56689999999975433333 23444455443 3345677666543343332 2333332 34555554433
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0072 Score=61.54 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
...++++||||+|+|....+ +.+.++++..+..+.+|+.+ |-.+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~~kL 163 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEPDKV 163 (824)
T ss_pred cCCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CChhhh
Confidence 35789999999999876553 44555555555555555544 444433
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=55.08 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.2
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.++.+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999977544
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0016 Score=56.34 Aligned_cols=47 Identities=15% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCccEEEEeccccccc-ccHHHHHHHHHHHcC-CCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLD-EHFASQMKEIIRLCS-RTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~ 281 (337)
+.+.++|||||+|.+.. ..+...+..++.... ...+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 34578999999998763 334445555554443 345677888877654
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.019 Score=58.29 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=26.8
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
..++++||||||+|....+ +.+.+++..-+..+.+|+. .|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE-CCCchhc
Confidence 4678999999998864333 3444444444445555553 5544443
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0021 Score=64.25 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.....+++-|..|+-. ...+++|.|..|||||.+.+--+...+.. ....+.++|+++.|+..|..+...+......
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~--~~~~~~~IL~ltft~~AA~em~eRL~~~lg~ 267 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLAR--GQAQPEQILLLAFGRQAAEEMDERIRERLGT 267 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHh--CCCCHHHeEEEeccHHHHHHHHHHHHHhcCC
Confidence 3446789999999853 34578999999999998865544443321 1223568999999999999998888765433
Q ss_pred cCcEEEEE
Q psy3143 189 TSVEVALS 196 (337)
Q Consensus 189 ~~~~v~~~ 196 (337)
.++.+..+
T Consensus 268 ~~v~v~TF 275 (684)
T PRK11054 268 EDITARTF 275 (684)
T ss_pred CCcEEEeH
Confidence 34444433
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0035 Score=54.32 Aligned_cols=47 Identities=9% Similarity=0.120 Sum_probs=25.6
Q ss_pred CCccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 236 SDIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
.++++|||||+|.+... .+...+..++... ....++|+.|...|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 44578999999987643 2333344444333 22345555454444443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0077 Score=59.81 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
.+..+..-..+.....+.+..-|.+.+..++..+ -+++.|.-|-|||.+.-+.+..... .. ...+++|++|+.+
T Consensus 197 ~~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~--~~--~~~~iiVTAP~~~ 272 (758)
T COG1444 197 PPLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAAR--LA--GSVRIIVTAPTPA 272 (758)
T ss_pred CCCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHH--hc--CCceEEEeCCCHH
Confidence 3344444455666666666666667777776654 5789999999999998876633321 11 1468999999999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc
Q psy3143 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 174 La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~ 253 (337)
-+..++..+.+-....+..-........ ...........|=+-+|.... .. -+++|||||=.+.
T Consensus 273 nv~~Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~-~DllvVDEAAaIp--- 336 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EE-ADLLVVDEAAAIP--- 336 (758)
T ss_pred HHHHHHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc----------cc-CCEEEEehhhcCC---
Confidence 9888877776655555433211111100 000000112235555554222 11 5799999998764
Q ss_pred HHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 254 FASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 254 ~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+.+..+.... +.++||.|+..
T Consensus 337 -lplL~~l~~~~----~rv~~sTTIhG 358 (758)
T COG1444 337 -LPLLHKLLRRF----PRVLFSTTIHG 358 (758)
T ss_pred -hHHHHHHHhhc----CceEEEeeecc
Confidence 34555554432 45778888764
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0066 Score=57.83 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
..++++|++|+|||... ..+.+.+.... ++.+++++.+ .++...+...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~~---------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKTH---------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHhh----------------------
Confidence 46889999999999543 34444443211 2456776655 455444433332100
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+.+..+... +.++++|||||+|.+... .....+..++..+ ....|+|+.|-..|..+
T Consensus 195 ------------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ------------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ------------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111111111 346789999999987543 2344455554443 33446665554444443
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0032 Score=54.60 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=29.5
Q ss_pred CCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
+.+++++|||++|.+.. ..+...+..++..+......++++++.++.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 33467999999997754 345566666666554433445666665543
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=61.24 Aligned_cols=137 Identities=18% Similarity=0.094 Sum_probs=79.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhC-CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
+++..+......+ ..+++-|..++..+.. ++-+++.|+.|+|||.+.- ++...+. ..+.+++.++||--.|.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e-----~~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWE-----AAGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHH-----HcCCeEEEEcCcHHHHH
Confidence 4444454443333 4589999999998864 4567899999999998743 3333331 13678999999977665
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
.+.+ ..++... |-..++..... +...+..-++||||||-++...
T Consensus 440 ~L~e-------~~Gi~a~------------------------TIas~ll~~~~-~~~~l~~~~vlVIDEAsMv~~~---- 483 (1102)
T PRK13826 440 GLEK-------EAGIQSR------------------------TLSSWELRWNQ-GRDQLDNKTVFVLDEAGMVASR---- 483 (1102)
T ss_pred HHHH-------hhCCCee------------------------eHHHHHhhhcc-CccCCCCCcEEEEECcccCCHH----
Confidence 4422 2222221 11111100001 1223566789999999966433
Q ss_pred HHHHHHHHcC-CCCeEEEEeec
Q psy3143 257 QMKEIIRLCS-RTRQTMLFSAT 277 (337)
Q Consensus 257 ~~~~i~~~~~-~~~q~i~~SAT 277 (337)
.+..+++... ...++|++.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 3334444443 45677776543
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=66.33 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
+++-|.+|+.+ ...+++|.|.+|||||.+...-+.+.+.. ....+.++|+|+.|+..|..+...+..+.
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~--~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG--CGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 68899999865 35688999999999999866555554422 12235689999999999999988888764
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0002 Score=58.81 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=54.7
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhc
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 211 (337)
++.|+-|-|||.+.-+.+...+. ....+++|.+|+.+-+..+++.+..-....+.+....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-----~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-----KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccc
Confidence 57899999999887665544331 1125799999999988887776655443333322000000 000011112
Q ss_pred CCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 212 ~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...|-+..|..+...- ...+++|||||=.+. .+.+..+ +.... .++||.|+..
T Consensus 73 ~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaIp----~p~L~~l---l~~~~-~vv~stTi~G 125 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--------PQADLLIVDEAAAIP----LPLLKQL---LRRFP-RVVFSTTIHG 125 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHH---HCCSS-EEEEEEEBSS
T ss_pred cceEEEECCHHHHhCc--------CCCCEEEEechhcCC----HHHHHHH---HhhCC-EEEEEeeccc
Confidence 3467777777655421 134899999998654 3444444 33333 4667888753
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=54.61 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=23.9
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..++++|++|+|||... ..+.+.+..+ ..+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~---~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN---NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh---CCCCcEEEEE
Confidence 35789999999999765 3344444322 1245677764
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.015 Score=51.36 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.++++.||+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999987643
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=60.57 Aligned_cols=149 Identities=12% Similarity=0.155 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhC-----C----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 116 PIQAATIPVALL-----G----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 116 ~~Q~~~i~~~~~-----~----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
|+|..++-.++- | +.+++.-+-|.|||......++..++.. ...+..++++++++..|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--CccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 567777766651 2 3588889999999987655444444322 2246789999999999999999999887
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
......... .+ ... ..... -.|.....+.+...+... ...+=.+..++|+||+|.+-+......+..-....
T Consensus 79 ~~~~~l~~~-~~-~~~---~~~~~--~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 79 EASPELRKR-KK-PKI---IKSNK--KEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR 151 (477)
T ss_pred HhChhhccc-hh-hhh---hhhhc--eEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC
Confidence 653211100 00 000 00001 123332223333222222 12222357899999999887654444444333332
Q ss_pred CCCCeEEEE
Q psy3143 266 SRTRQTMLF 274 (337)
Q Consensus 266 ~~~~q~i~~ 274 (337)
++.+++.+
T Consensus 152 -~~pl~~~I 159 (477)
T PF03354_consen 152 -PNPLIIII 159 (477)
T ss_pred -CCceEEEE
Confidence 34455444
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.017 Score=56.84 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=26.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
..++++||||+|+|....+ ..+..+++..+....+|+ .+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EECCh
Confidence 4678999999998765544 444555555455555554 44433
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0035 Score=54.42 Aligned_cols=42 Identities=5% Similarity=0.200 Sum_probs=25.0
Q ss_pred ccEEEEeccccccc-ccHHHHHHHHHHHc-CCC-CeEEEEeecCch
Q psy3143 238 IEVLVLDEADRMLD-EHFASQMKEIIRLC-SRT-RQTMLFSATMTD 280 (337)
Q Consensus 238 ~~~iViDEad~l~~-~~~~~~~~~i~~~~-~~~-~q~i~~SAT~~~ 280 (337)
+++|||||+|.+.. ..+...+..++..+ ... .++|+ |++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCCh
Confidence 47899999998764 34555555555443 223 35554 555444
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0052 Score=51.03 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=33.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
+++.|++|+|||...+-.+...+. .+.+++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999877666665552 2556888764 35556666666554
|
A related protein is found in archaea. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0089 Score=51.51 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=25.0
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCC-eEEEEeecCch
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR-QTMLFSATMTD 280 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~-q~i~~SAT~~~ 280 (337)
..++|||||+|.+.... ...+..++....... .+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 35689999999875433 334444444333233 35677777654
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.034 Score=50.62 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
...+++||||+|.|.... ...+..++...+..+.++ ++++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeCCc
Confidence 357899999999986443 344555555545455544 444433
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.014 Score=57.71 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
..++++||||||+|....+ +.+.+++..-+..+.+|+ ..|-+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL-~Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL-ATTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE-ecCCcc
Confidence 5689999999998865444 333334444444444444 344333
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.032 Score=56.02 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc-CC-HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV-PT-RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~-Pt-~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+-+.+.||||+|||+.....+....... .+.++.++. -| |.-+ ...++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~----G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE----GADQLALLTTDSFRIGA---LEQLRIYGRILGVPV------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc----CCCeEEEecCcccchHH---HHHHHHHHHhCCCCc-------------
Confidence 4567999999999988655443332111 112444433 22 2112 223333333333322
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCch-hHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTD-AVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~ 284 (337)
.++.+|..+...+.. +.+.++|+||=+=+.... .....+..+.....+...++++|||... .+.+
T Consensus 246 --------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 --------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred --------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 223466666665543 445678888877655422 2334444444444445567777888653 3455
Q ss_pred HHHhh
Q psy3143 285 LVSVS 289 (337)
Q Consensus 285 ~~~~~ 289 (337)
.+..|
T Consensus 313 i~~~f 317 (767)
T PRK14723 313 VVHAY 317 (767)
T ss_pred HHHHH
Confidence 55554
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.016 Score=52.58 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=26.9
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
..++|||||+|.+........+..++...+..+++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998844444556666677666667666544
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.034 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILE 151 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~ 151 (337)
++-++++||+|+|||....-.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999876544433
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.058 Score=51.87 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=32.8
Q ss_pred ccccCCCCHHHHHHHHhC-CC-CCChHHHHHHHHH------------HhCCCCEEEEcCCCCchhHHhHHHH
Q psy3143 92 SFHQMNLSRPLLKAIGAL-NY-IYPTPIQAATIPV------------ALLGRDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~-~~-~~p~~~Q~~~i~~------------~~~~~~~lv~a~TGsGKT~~~~~~~ 149 (337)
....+|+++.+.+.|... .- ............. +..|+.+.++|+||+|||......+
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 345667888888777442 11 1111111122211 2245678899999999998764433
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.028 Score=49.62 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC--CH-HHHHHHHHHHHHHhhccCcEEEEEeCCccHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP--TR-ELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P--t~-~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~ 203 (337)
.+..+.++|++|+|||..+..-+.... . .+.++.++.- .| ..+.|+. .++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~--~----~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~--------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH--G----KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVI--------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH--H----cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEE---------
Confidence 346788999999999997765443322 1 1334444432 22 2333332 22222222221
Q ss_pred HHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCc-hh
Q psy3143 204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMT-DA 281 (337)
Q Consensus 204 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~-~~ 281 (337)
...+|..+...+..- -....++++|||-+=++.. ......+..+++...+..-++++|||.. .+
T Consensus 135 ------------~~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 135 ------------AVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ------------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 113555555544321 1124578999999876543 2334445555555555545677899875 46
Q ss_pred HHHHHHhhC
Q psy3143 282 VNDLVSVSL 290 (337)
Q Consensus 282 ~~~~~~~~~ 290 (337)
+.+.++.|-
T Consensus 201 ~~~~~~~f~ 209 (270)
T PRK06731 201 MIEIITNFK 209 (270)
T ss_pred HHHHHHHhC
Confidence 666666543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.021 Score=54.54 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=26.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
..++++||+|+|||..... +.+.+..+. .+.+++++. ...+...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~---~~~~v~yi~-~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKN---PNAKVVYVT-SEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhC---CCCeEEEEE-HHHHHHH
Confidence 4689999999999976543 334443211 244566664 3344433
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0081 Score=52.70 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
.+.++++.|++|+|||..+..-. +.+.. .+.-++.+++.+|+.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~~------~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELLK------AGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHHH------cCCeEEEEEHHHHHHHHHHH
Confidence 67799999999999998764433 33331 23345555666776665443
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0049 Score=61.95 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.. ......++|+|+.|+..|.++...+.....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN--CGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 57889998864 45789999999999999876655555521 112356899999999999999888877553
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.045 Score=50.65 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=27.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCC-CCeEEEEeecCchh
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSR-TRQTMLFSATMTDA 281 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~ 281 (337)
...-+||+||+|.|....- ..+..|.+.... ..+++++.-+-...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHH
Confidence 3456899999999987653 455555554433 34555554443333
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0095 Score=56.00 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
|-......+..+..+++++++|++|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566677778889999999999999997764
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.021 Score=61.63 Aligned_cols=62 Identities=26% Similarity=0.236 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHh--HHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAF--MLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~--~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
.+++-|..|+..++.. +-++|.|..|+|||.+. ++.++..+. ...+.+++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~----e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP----ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh----hccCceEEEEechHHHHHHH
Confidence 5799999999999865 67889999999999874 223333221 12356799999998776654
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0076 Score=60.00 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|+-.|..++..+..+ +..++.|.||||||+...- ++..+ +..+|||+|+..+|.|++..++.+..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~--------~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV--------NRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh--------CCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 5788888888876543 2667999999999987543 33332 33499999999999999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0042 Score=55.09 Aligned_cols=54 Identities=24% Similarity=0.103 Sum_probs=33.5
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+..|.-+++.|++|+|||......+.+.+.. .+.+++++.-- +-..++...+..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEcc-cCHHHHHHHHHH
Confidence 4466788999999999998766655554421 14567777632 223444444433
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0044 Score=58.23 Aligned_cols=138 Identities=14% Similarity=0.235 Sum_probs=76.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH-HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE-LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~-La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
-.++.|..|||||.+..+-++..++.. ..+.+++++-|+.. +...++..+.......++....-...... ....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~---~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~ 77 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN---KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKI 77 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc---CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEe
Confidence 367899999999999888887777644 13577999999987 55566777776554444321111111100 0000
Q ss_pred HhcCCCEEEECc-HHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 209 LRKCPDIVIATP-GRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 209 ~~~~~~Ilv~Tp-~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...+..|++..- +.-.+ ......+.++.+|||..+....|...+.++ +. +...+.+++|.++..
T Consensus 78 ~~~g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~~~~~l~~rl-r~-~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFEDIKELIPRL-RE-TGGKKFIIFSSNPES 142 (396)
T ss_pred cCCCeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHHHHHHHHHHh-hc-cCCccEEEEEcCcCC
Confidence 011334555543 11111 112334689999999988544444444332 22 122224677887654
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.029 Score=55.16 Aligned_cols=140 Identities=9% Similarity=0.120 Sum_probs=79.2
Q ss_pred HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC--------cEEEE
Q psy3143 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS--------VEVAL 195 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~--------~~v~~ 195 (337)
.....+-.++.+|-|.|||++..+.+...+.. .+.+++|++|...-+.++++.+.......+ ..+..
T Consensus 183 ~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~ 257 (752)
T PHA03333 183 DEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVT 257 (752)
T ss_pred HHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEE
Confidence 33456678889999999999877665544422 256899999999999999888777665222 11121
Q ss_pred EeCCcc-HHHHH-HHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 196 SVGGLE-VKVQE-SVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 196 ~~~~~~-~~~~~-~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
..|+.. ..... .... ....|.+++- ......-..++++|+|||..+-..-+.. +.-++.. ...+++
T Consensus 258 vkgg~E~I~f~~p~gak~G~sti~F~Ar--------s~~s~RG~~~DLLIVDEAAfI~~~~l~a-IlP~l~~--~~~k~I 326 (752)
T PHA03333 258 LKGTDENLEYISDPAAKEGKTTAHFLAS--------SPNAARGQNPDLVIVDEAAFVNPGALLS-VLPLMAV--KGTKQI 326 (752)
T ss_pred eeCCeeEEEEecCcccccCcceeEEecc--------cCCCcCCCCCCEEEEECcccCCHHHHHH-HHHHHcc--CCCceE
Confidence 222211 00000 0000 0123333331 1112232457899999999876533333 3323222 456777
Q ss_pred EEeecCc
Q psy3143 273 LFSATMT 279 (337)
Q Consensus 273 ~~SAT~~ 279 (337)
++|.+-.
T Consensus 327 iISS~~~ 333 (752)
T PHA03333 327 HISSPVD 333 (752)
T ss_pred EEeCCCC
Confidence 7888764
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0047 Score=59.11 Aligned_cols=90 Identities=19% Similarity=0.086 Sum_probs=57.7
Q ss_pred CCCHHH-HHHHHhCCCCCChH-------HHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 97 NLSRPL-LKAIGALNYIYPTP-------IQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 97 ~l~~~l-~~~l~~~~~~~p~~-------~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
++..++ ...|.+.--.++.. -|-++|.. -.++-++|.|..|||||.+++-=+...++.....-....|||+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEE
Confidence 344444 44565554444432 23333321 2345688999999999998765554444433333334449999
Q ss_pred cCCHHHHHHHHHHHHHHhh
Q psy3143 169 VPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~ 187 (337)
.|++-+..-+.+++-.++.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999999999999988874
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.039 Score=52.54 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..++++||+|+|||.... .+.+.+.... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~---~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE---PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC---CCCeEEEEEH
Confidence 468999999999997653 3344443211 2456777754
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0028 Score=64.19 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++.+ ...+++|.|..|||||.+...=+.+.+. . ......++|+|+.|+..|..+.+.+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~-~-~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLS-V-ENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHH-c-CCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999999865 3568999999999999986554444442 1 122456899999999999999998888754
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0095 Score=52.89 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCccEEEEecccccccccHHH--HHHHHHHHcCCCCeE
Q psy3143 236 SDIEVLVLDEADRMLDEHFAS--QMKEIIRLCSRTRQT 271 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~--~~~~i~~~~~~~~q~ 271 (337)
-.++++||||.|.++..+... .+...++.+.+..++
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 457899999999988765333 333445555555444
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=50.92 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+..+++++||.+|.+.... +...+..++..+ ..+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4457899999999987643 455555555544 44667777776776654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.025 Score=45.70 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=76.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH-HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG-VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La-~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
+.|..++|.|||.+++--++..+ +.+.+++++.=.+.-. .--...+..+ .++.+... +.......
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~------~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~--g~~~~~~~--- 70 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL------GHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRM--GRGFFWTT--- 70 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEEC--CCCCccCC---
Confidence 55677889999999877777666 2466788854222210 0001223333 23333221 21110000
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
....--.......+..... .+....+++||+||+-..+..++ ...+..+++..+...-+|+.+-..|+.+.+.+.
T Consensus 71 -~~~~~~~~~a~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 71 -ENDEEDIAAAAEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred -CChHHHHHHHHHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 0000000000122222222 23356789999999998766663 346667788888888888888888888877664
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0061 Score=53.67 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 87 ~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
+....+|+++++++-+.+.+. ....=++|.||||||||.. +.+++.++..
T Consensus 102 p~~i~~~e~LglP~i~~~~~~------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAE------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHh------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 355678888888776655321 1223588999999999987 4567787753
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.029 Score=55.58 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=24.9
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+...+++||||+|.|....+ ..+.+.+...+..+.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 45679999999997754333 34444455445556555544
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.03 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=19.8
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+-.+.++++.||+|+|||.......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4467899999999999997665443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.025 Score=53.46 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=29.3
Q ss_pred cEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh
Q psy3143 239 EVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 239 ~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
++||||.+-++. +......+..+.....+..-++.++|+...+..+.+..|
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 677788775432 223444555555555555566677777766554444443
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.024 Score=54.75 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.++++||+|+|||.....
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999976543
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.021 Score=47.39 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=81.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
....+++.+++|.|||.+++--++..+ +.+.+|+++.=.+--.. ......+....++.+... +.......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~------g~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~--g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV------GHGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVM--GTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH------HCCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEEC--CCCCcccC
Confidence 456899999999999999877777666 34677888864332100 011111211112332221 21110000
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCchhHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 284 (337)
...+--.......+..... .+.-..+++||+||+-..+..++ ...+..+++..|...-+|+..-..|+++.+
T Consensus 91 ----~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 ----QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ----CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000111122332222 22345689999999998887774 345666777777777888877778888877
Q ss_pred HHH
Q psy3143 285 LVS 287 (337)
Q Consensus 285 ~~~ 287 (337)
.+.
T Consensus 165 ~AD 167 (191)
T PRK05986 165 AAD 167 (191)
T ss_pred hCc
Confidence 664
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.017 Score=63.05 Aligned_cols=65 Identities=23% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 112 IYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
..+++.|..|+..++.+ +-++|.|..|+|||...- .++..+.. .....+.+++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~-l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNT-LPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHH-hhcccCceEEEECCcHHHHHHH
Confidence 35799999999999875 467899999999998742 22222211 1112356789999998776554
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.11 Score=41.83 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=25.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
-++|.|++|+|||....- ++..+...........+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK-LAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHH-HHHHHHhcCcccccceEEEEEeehhhhh
Confidence 478999999999986543 3444432222111123455555554443
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.061 Score=48.11 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45789999999999987644
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0038 Score=63.22 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++.+ ...+++|.|..|||||.+..-=+...+. . ....+.++|+|+-|+..|..+.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~-~-~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQ-V-ENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHH-c-CCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999999864 3568999999999999886554444442 1 122456899999999999999998888654
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.023 Score=63.31 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=78.7
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.+++-|..++..++.. +-.++.|+.|+|||.+. -.++..+. ..+.++++++||...+..+.+..-
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~-----~~G~~V~~lAPTgrAA~~L~e~~g------- 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLAS-----EQGYEIQIITAGSLSAQELRQKIP------- 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHhc-------
Confidence 4688999999998875 46789999999999764 33333331 136789999999876665443211
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~ 269 (337)
.... ........+.. ..-..|...++ + ....+..-++||||||-++. ...+..+++.. ..+.
T Consensus 496 ~~A~------Ti~~~l~~l~~--~~~~~tv~~fl----~-~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 496 RLAS------TFITWVKNLFN--DDQDHTVQGLL----D-KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNS 558 (1960)
T ss_pred chhh------hHHHHHHhhcc--cccchhHHHhh----c-ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCC
Confidence 1100 00001111111 11122222222 1 12335677899999999764 34455555544 4678
Q ss_pred eEEEEeec
Q psy3143 270 QTMLFSAT 277 (337)
Q Consensus 270 q~i~~SAT 277 (337)
++|++.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877643
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.017 Score=52.62 Aligned_cols=41 Identities=20% Similarity=-0.012 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHhCCC----CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVALLGR----DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~----~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
..|||...+..+.... -.+++||.|.|||..+... ...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~-A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL-AAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH-HHHHcC
Confidence 3688888888776442 4789999999999876543 344443
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.062 Score=52.30 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=25.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+++||||||+|....+ +.+...+..-+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 45678999999999865443 34444444444455555544
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=62.93 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc-cCcE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVE 192 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~-~~~~ 192 (337)
.|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ....++|+|+=|+..|..+...+...... ..-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 4889999997 3688999999999999998777666666422 22356999999999999988777764321 110
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCC-CccEEEEecccc
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLS-DIEVLVLDEADR 248 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~-~~~~iViDEad~ 248 (337)
........+.+..-...-|+|-..+...+.+.....+. +-.+=|.||...
T Consensus 76 ------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00111112223333467899998887655443121111 113456888875
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.026 Score=53.70 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999998875543
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.022 Score=55.73 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc--CcEEEEEeCCccHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT--SVEVALSVGGLEVKVQ 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~--~~~v~~~~~~~~~~~~ 205 (337)
.+-.++..|--.|||+... +++..++..- .+.++++++|.+..+..+++.+....... +..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~---~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF---RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC---CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 4668899999999999765 5555544222 36789999999999999999888765421 111212222 111
Q ss_pred HHHHhcC--CCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 206 ESVLRKC--PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 206 ~~~~~~~--~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.-.+.++ ..|.++|. .+.+...=..++++|+|||+.+-+.-+...+-.+. ..+.++|.+|.|-+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~---~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLN---QTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHHHHHh---ccCccEEEEecCCCC
Confidence 0011112 25666641 22223334478999999999877655544443332 237889999988554
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=58.52 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|+..|..++..+..+ +..++.|.+|||||+.+.. ++... +..+|||+|+...|.|++..+..+..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~--------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL--------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 5899999999887533 2577999999999987542 33332 34599999999999999999988763
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.046 Score=53.73 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=16.7
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876644
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.044 Score=51.55 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=31.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEE
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVAL 195 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~ 195 (337)
-++++|++|+|||+...-.+.. +. . .+.+++++. |.|.-|.. +++.++...++.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~-~----~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQ-R----KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYG 160 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HH-H----CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEe
Confidence 4678999999999775433322 21 1 244566665 44554443 334444444555443
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=58.49 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=70.8
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCC---CCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKP---RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
..|+.-..|-|||...+..++..=.... ......-.||++|+.. ..|....+.+......+.+.+++|.. ..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~-~~qW~~elek~~~~~~l~v~v~~gr~----kd 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSL-LTQWKTELEKVTEEDKLSIYVYHGRT----KD 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHH-HHHHHHHHhccCCccceEEEEecccc----cc
Confidence 5788889999999886544433221111 0113455888999744 45555555655555567777777711 12
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~ 253 (337)
......++|+++|++.+.. . .+.--.+-.+|+||||.+-...
T Consensus 229 ~~el~~~dVVltTy~il~~----~-~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 229 KSELNSYDVVLTTYDILKN----S-PLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred cchhcCCceEEeeHHHhhc----c-cccceeEEEEEeccccccCCcc
Confidence 2223456899999998874 1 1112345579999999876544
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.098 Score=47.79 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=25.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...++|||||+|.+.. .....+..++...+..+++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 4568999999998753 33445555666555566655543
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.046 Score=42.47 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=26.6
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
.-.+|+|||+|.+- +|...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999874 5777777777754 45666654443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.091 Score=53.36 Aligned_cols=41 Identities=12% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeec
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSAT 277 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT 277 (337)
..+.+|||||+|.|.... ...+..|++.. ....+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346789999999987543 33444444432 234555554444
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.038 Score=42.72 Aligned_cols=16 Identities=38% Similarity=0.304 Sum_probs=13.6
Q ss_pred EEEEcCCCCchhHHhH
Q psy3143 131 ICGCAATGTGKTAAFM 146 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~ 146 (337)
++++||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999997653
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.044 Score=51.75 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=42.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCcc-HHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLE-VKVQE 206 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~-~~~~~ 206 (337)
-++++|++|+|||+...-.+..... . .+.+++++. +.|..+.. .+..++...++.+.....+.. .....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~-~----~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK-K----KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-h----cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 4678999999999876544433221 1 134455554 45554432 223333444555443221111 11111
Q ss_pred ----HHHhcCCC-EEEECcHHH
Q psy3143 207 ----SVLRKCPD-IVIATPGRL 223 (337)
Q Consensus 207 ----~~~~~~~~-Ilv~Tp~~l 223 (337)
.....++| |+|=|||++
T Consensus 174 ~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCCCc
Confidence 11123343 677788765
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.084 Score=51.86 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=27.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
....+++||||+|.|....+ +.+...+...+..+-+|+.+ |-+..+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~kll 162 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPEKVL 162 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChHhhH
Confidence 46789999999998865543 33444444444444444433 5444333
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0021 Score=60.75 Aligned_cols=98 Identities=27% Similarity=0.224 Sum_probs=63.5
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-++-+|||.||||.-+ ++++. ...+.++--|.|-||+.+++.+...+ +.+.++.|.........
T Consensus 193 Ii~H~GPTNSGKTy~A----Lqrl~------~aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA----LQRLK------SAKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred EEEEeCCCCCchhHHH----HHHHh------hhccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--
Confidence 3556899999999664 44442 23458999999999999999988765 55555555432211110
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
...++.+-||-++.- .-..+++.||||+++|-+.
T Consensus 257 ~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCc
Confidence 122466667743221 1245789999999988764
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.071 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+..+++||.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 368999999999998765543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.058 Score=47.84 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
+-++++|++|+|||....-.+.... . .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~--~----~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK--K----QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--h----cCCEEEEEe
Confidence 4567889999999987654433322 1 245666665
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0057 Score=50.03 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=76.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH-HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG-VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La-~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
-+.+..++|.|||.+++--++..+ +.+.+|+|+.=.+.-. .-=...+..+ ++.+...-.+.....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~------~~g~~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~~---- 72 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRAL------GHGKKVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWET---- 72 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH------HCCCeEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeecC----
Confidence 356788899999999877677666 3466787774222110 0001122221 233322211111000
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.+..--.......+..... .+.-..+++||+||+-..+..++. ..+..+++..|...-+|+..-..|+.+.+++
T Consensus 73 --~~~~~~~~~~~~~~~~a~~--~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 73 --QNREADTAIAKAAWQHAKE--MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred --CCcHHHHHHHHHHHHHHHH--HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 0000000001122222222 222357899999999987776633 4566777888888888888888888888766
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 149 D 149 (173)
T TIGR00708 149 D 149 (173)
T ss_pred c
Confidence 4
|
Alternate name: corrinoid adenosyltransferase. |
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=48.22 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=78.8
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-HHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-YQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
++|....|-|||++++=-++..+ +.+.|++|+.=.+--...= ...+..+. ..+....+-.+.....+. .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~------GhG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~--~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL------GHGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQD--R 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh------cCCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcC--c
Confidence 66788899999999877777776 4677888886332211110 11222221 111111111111111110 0
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
.. ++ ..+...+..... .+.-..+++||+||....+..++. ..+..+++..|...-+|+..-..|+.+.+.+.
T Consensus 101 ~~--d~--~aa~~~w~~a~~--~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 101 EA--DI--AAAKAGWEHAKE--ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred HH--HH--HHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 00 22 233333433322 222346899999999988877643 45666777777777778777778888877765
Q ss_pred h
Q psy3143 288 V 288 (337)
Q Consensus 288 ~ 288 (337)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 3
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.037 Score=52.70 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..++++||+|+|||.... .+.+.+.. .+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~-----~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE-----SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH-----cCCCEEEeeH
Confidence 468999999999997654 34444432 2456777753
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=56.84 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=25.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...++++||||+|+|....+ +.+.+.++.-+.++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 45689999999998865544 33333444444556555554
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.023 Score=46.43 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=69.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 210 (337)
+.|....|-|||.+++=-++..+ +.+.||+|+.=.+.- ........+....++.+..+ +...........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~--g~~f~~~~~~~~ 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERF--GKGFVWRMNEEE 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----GGGHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEc--CCcccccCCCcH
Confidence 55677889999999877777766 467889999765541 11122333332223333221 211111100000
Q ss_pred cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 211 ~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
. + .......++.... .+.-..+++||+||+-..+..++. ..+..+++..+...-+|+..-..|+.+...+.
T Consensus 76 ~--~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 E--D--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp H--H--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred H--H--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 1 0111222332222 233467899999999987777643 45667777777788888888888888888765
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.046 Score=53.91 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+...+++||||+|.|....+ +.+...++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 56789999999998864443 33334444445555555543
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.027 Score=54.51 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
..++++||||||+|....+ +.+.+.++..+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4689999999998875554 34444555555566555544
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0031 Score=60.15 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=70.9
Q ss_pred EEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH-Hh-hccCcEEEEEeCCccHHH----HH
Q psy3143 133 GCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LA-QFTSVEVALSVGGLEVKV----QE 206 (337)
Q Consensus 133 v~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-l~-~~~~~~v~~~~~~~~~~~----~~ 206 (337)
..+.||||||++..-.+++...+. -...|+.|...........-+.. +. +++ +.-.+.+++....- ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-----yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-----YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-----hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeeeccc
Confidence 467899999998877666654211 11355665554443332211111 10 000 00000111111000 00
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCC--CCC---CCCcc-EEEEecccccccc-------------cHHHHHHHHHHHcCC
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTP--SFS---LSDIE-VLVLDEADRMLDE-------------HFASQMKEIIRLCSR 267 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~---l~~~~-~iViDEad~l~~~-------------~~~~~~~~i~~~~~~ 267 (337)
.--..+..|.++|.+.|...+.+.+ .+. +.+.+ +++-||||++... +|...+. +...-++
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~-la~~~nk 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK-LALEQNK 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH-HHHhcCC
Confidence 0123557899999999987775432 232 44444 4567999998642 1222221 1112244
Q ss_pred CCeEEEEeecCchh
Q psy3143 268 TRQTMLFSATMTDA 281 (337)
Q Consensus 268 ~~q~i~~SAT~~~~ 281 (337)
..-++.+|||.+.+
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 55677899999944
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.061 Score=43.75 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
...+++|||+||.|.... .+.+.++++.-+..+.+|++| +-+..+.
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t-~~~~~il 146 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILIT-NNPSKIL 146 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEE-S-GGGS-
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEE-CChHHCh
Confidence 578999999999886444 355555555555555555544 4444433
|
... |
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.047 Score=45.18 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc-EEEEEeCCccHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV-EVALSVGGLEVKVQE 206 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~ 206 (337)
++=.+++||+.||||...+.-+..... .+.++++..|-..- ..+. .|..-.| ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G-~~----- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAIDT-------------RYGVGKVSSRIG-LS----- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEeccccc-------------ccccceeeeccC-Cc-----
Confidence 344689999999999875554444432 35678888875221 1111 1222112 11
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
..-++|-.+..+...+.... ....+++|.||||+-+. ......+..+...
T Consensus 59 -----~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQF~~-~~~v~~l~~lad~ 108 (201)
T COG1435 59 -----SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQFFD-EELVYVLNELADR 108 (201)
T ss_pred -----ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhHhCC-HHHHHHHHHHHhh
Confidence 12467777778888776531 12228899999999643 3333444455444
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.047 Score=53.53 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+.++++||||++|.+.... +...+..++..+ ....++|+.|-..+..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 3457899999999876533 344444555444 33567776555555444
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.062 Score=46.46 Aligned_cols=51 Identities=14% Similarity=-0.052 Sum_probs=32.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|.-+++.|++|+|||...+..+...+. ++.++++++.. +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~------~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ------NGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEeCC-CCHHHHHHHHHH
Confidence 4678899999999999876555554431 24567888743 333444444443
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.089 Score=50.47 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchhHHhHHH
Q psy3143 130 DICGCAATGTGKTAAFMLP 148 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~ 148 (337)
.++++||+|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876553
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.11 Score=50.29 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.8
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++||.|+|||..+.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998875543
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.018 Score=49.59 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-------CcEEEEEeCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-------SVEVALSVGG 199 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-------~~~v~~~~~~ 199 (337)
.|..+++.|++|+|||...+..+.+.+.. .+.++++++-. +-..++.+.+..+.-.. .+.+.-....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-----~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-----FGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-----cCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 34578999999999998877777776632 04468888743 33455555555443100 0111111100
Q ss_pred ccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc----ccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD----EHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~----~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
... . . -..+..+...+.. .+.-...+.+|||-...+.. ..++..+..+...+.....+.+++
T Consensus 92 ~~~--~--------~--~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt 157 (226)
T PF06745_consen 92 RIG--W--------S--PNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLT 157 (226)
T ss_dssp GST-----------T--SCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccc--c--------c--ccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 000 0 0 1233334333322 11111238999999987722 235666777777766566666777
Q ss_pred ecC
Q psy3143 276 ATM 278 (337)
Q Consensus 276 AT~ 278 (337)
+..
T Consensus 158 ~~~ 160 (226)
T PF06745_consen 158 SEM 160 (226)
T ss_dssp EEE
T ss_pred Ecc
Confidence 663
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.059 Score=49.78 Aligned_cols=129 Identities=21% Similarity=0.174 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
.+.+.++|+.|+|||...-+. ++.+ ....+.| +...+.+..+++.+..+. |+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~l----p~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~------- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSL----PIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQD------- 114 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhC----Ccccccc----ccccHHHHHHHHHHHHHh-----------CCC-------
Confidence 467999999999999754332 2222 1111112 134466677777666654 100
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH--
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVND-- 284 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~-- 284 (337)
+- ...+.+.+ .....+|++||.|. .+-+-.-.+.++++.+ ....-+|+.|-+.|.++..
T Consensus 115 ------~~----l~~va~~l-------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~g 176 (362)
T PF03969_consen 115 ------DP----LPQVADEL-------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNG 176 (362)
T ss_pred ------cc----HHHHHHHH-------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCc
Confidence 00 01112222 23456899999994 3333344555555544 5677788888888877422
Q ss_pred --------HHHhhCCCCeEEEeCCC
Q psy3143 285 --------LVSVSLTRPVRVFVDNN 301 (337)
Q Consensus 285 --------~~~~~~~~p~~i~~~~~ 301 (337)
.+...-..-.++.++..
T Consensus 177 l~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 177 LQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred ccHHHHHHHHHHHHhceEEEEecCC
Confidence 23333345556666553
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.023 Score=49.33 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|..++|.|++|+|||...+..+...+. .+.++++++ +.+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4568899999999999977766666652 255688887 4455666666666543
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.061 Score=53.08 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
...++++||||+|+|....|. .+.+.+..-+..+.+| |.+|-+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fI-L~Ttd~~k 166 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFV-LATTDPQK 166 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEE-EEECCchh
Confidence 356899999999988755543 2333333333444444 44454433
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.037 Score=51.23 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=61.0
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCC-----eeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQN-----TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~-----~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
-.+++||.|+||+..+.. +...++.......+ +..+-+++.-..|. .+.....-.+..+......+.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~-------~i~~~~HPDl~~i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR-------RIAAGAHGGLLTLERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHH-------HHHccCCCCeEEEeccccccc
Confidence 488999999999987544 44555543322111 22333344322222 222222222222211000000
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
... ...|.|-..-.+...+.. .......+++||||+|.|.... .+.+.++++.-+..+.+|++|.
T Consensus 115 --~~~--~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 115 --KRL--RTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred --ccc--cccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEEC
Confidence 000 113444333334444433 2234678899999999886433 3444444444444444454443
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.066 Score=50.33 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
|+-+.+.||||+|||+.....+...+.... ...-.++...+.-.+ ....+..++...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~---~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~------------ 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG---ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRS------------ 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEecCCcchh--HHHHHHHHHHHcCCceec------------
Confidence 445779999999999886544333322111 112245555553221 122233344333443322
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchh-HHHH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDA-VNDL 285 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~-~~~~ 285 (337)
+.++..+...+.. +.+.++++||.+=+... ......+..+.........++++|||.... +.+.
T Consensus 254 ---------v~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ---------IKDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---------CCCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 2233333333322 45567788887632211 112333333332223344567789987544 5555
Q ss_pred HHhh
Q psy3143 286 VSVS 289 (337)
Q Consensus 286 ~~~~ 289 (337)
+..|
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 5544
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=54.97 Aligned_cols=176 Identities=15% Similarity=0.163 Sum_probs=91.1
Q ss_pred cCCccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 165 (337)
...+|.+.|--..+...|... -+.+|-.++.-.+. .-..+++|||+|+|||+.+=..+-+. + .-
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAKAVANEa---------g-~N 572 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAKAVANEA---------G-AN 572 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHHHHhhhc---------c-Cc
Confidence 346799998777777666432 33334333322221 24579999999999998652221111 0 01
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
.|-+---+|..- .||-.++-.+-+..+ -.-+.-.+|.|||
T Consensus 573 FisVKGPELlNk--------------------------------------YVGESErAVR~vFqR--AR~saPCVIFFDE 612 (802)
T KOG0733|consen 573 FISVKGPELLNK--------------------------------------YVGESERAVRQVFQR--ARASAPCVIFFDE 612 (802)
T ss_pred eEeecCHHHHHH--------------------------------------HhhhHHHHHHHHHHH--hhcCCCeEEEecc
Confidence 222222233211 122222222222211 0123446788999
Q ss_pred ccccccc-------cHHHHHHHHHHHc---CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEe
Q psy3143 246 ADRMLDE-------HFASQMKEIIRLC---SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315 (337)
Q Consensus 246 ad~l~~~-------~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~ 315 (337)
+|.|... .-...+..++--+ ....++.++.||-.+++-. |.+++-+..... .|+-+
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID--------pAiLRPGRlDk~------LyV~l 678 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID--------PAILRPGRLDKL------LYVGL 678 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc--------hhhcCCCccCce------eeecC
Confidence 9987531 1223334444333 3456788999997776432 333332222222 26666
Q ss_pred cCcchhhHHHHHHHhhhc
Q psy3143 316 SNIDEVRLYNVLGLMLLR 333 (337)
Q Consensus 316 ~~~~~~~~~~~L~~ll~~ 333 (337)
.+. .++.++|+.+.++
T Consensus 679 Pn~--~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 679 PNA--EERVAILKTITKN 694 (802)
T ss_pred CCH--HHHHHHHHHHhcc
Confidence 654 7899999988864
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.016 Score=52.64 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=26.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
....+++||||||.|... -.+.+...+..-+....++ +++.-+..
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~i-l~~n~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFI-LITNDPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEE-EEcCChhh
Confidence 467899999999988642 2344444444444444444 44443333
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.031 Score=55.07 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
...++++||||+|.|....+ +.+...+..-+....+| |.+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fI-l~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFI-FATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEE-EEeCChhh
Confidence 46789999999998764443 34444444444444444 44454433
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.11 Score=48.71 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=63.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
-++++||+|+|||+...-.+...... .+.++.++. +.|..+.. .+..++...++.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------ 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------ 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee------------
Confidence 37789999999999876555443221 133454443 33444433 333333333332211
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcC---CCCeEEEEeecCch-hH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCS---RTRQTMLFSATMTD-AV 282 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~---~~~q~i~~SAT~~~-~~ 282 (337)
+..+..+...+. -..+++||||=+-++.. ......+..+++... +...++++|||... ++
T Consensus 285 ---------~~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 ---------VKDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred ---------hHHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 011223333332 13467888886655422 233444555555432 22456788998887 45
Q ss_pred HHHHHhh
Q psy3143 283 NDLVSVS 289 (337)
Q Consensus 283 ~~~~~~~ 289 (337)
.+.+..|
T Consensus 350 ~~~~~~f 356 (432)
T PRK12724 350 LTVLKAY 356 (432)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.04 Score=49.92 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 112 IYPTPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
..++|+|..++..+. .|+ -.+++||.|+||+..+.. +...++.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 346788888887655 444 488999999999986644 4444544
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.01 Score=60.33 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++.+ ...+++|.|..|||||.+..-=+.+.+... ...+.++|+++-|+..|..+...+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 478999999875 357899999999999998765555554211 12346899999999999999888887653
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=53.00 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHH-hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVA-LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
-+..|...|. +++.|...+..+ ..+++++++|+||||||... -.++..+...+ ...+++++-.+.|+
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~---~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQD---PTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcC---CCceEEEEcCCCcc
Confidence 3445555565 356677777654 45679999999999999653 44444432111 24578888888887
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.11 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=17.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 130 DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
-++++||+|+|||.++.+. ...+
T Consensus 38 a~Lf~GppGtGKTTlA~~l-A~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLI-AMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHH
Confidence 3599999999999986543 3444
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.06 Score=48.59 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCCccEEEEecccccccccHHH--HHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFAS--QMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~--~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
+.++++|||||........|.. .+..|+... .....+++.|---..++..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 4568999999998643333433 344454433 3455666655544444444
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.011 Score=50.37 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.3
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
+++++||+|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 689999999999976544
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.029 Score=47.40 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|+=.+++||++||||.-.+-.+..... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEecc
Confidence 455688999999999765544433332 355688888863
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.053 Score=51.26 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.4
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
+++++||+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 789999999999987543
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.04 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.4
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+.++++||||+|||+...-.+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467799999999998765433
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.032 Score=56.76 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=64.1
Q ss_pred CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch------hHHHHHH
Q psy3143 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD------AVNDLVS 287 (337)
Q Consensus 214 ~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~------~~~~~~~ 287 (337)
.|+++||..|..-+.. +.+.+..+..|||||||++....-...+.++++..++..-+.+|||.+.. .+.+.++
T Consensus 9 gi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 9 GIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 7999999999766655 37889999999999999998877677777888888888889999999875 3555555
Q ss_pred hhCCCCeEEE
Q psy3143 288 VSLTRPVRVF 297 (337)
Q Consensus 288 ~~~~~p~~i~ 297 (337)
...-.-+.+.
T Consensus 88 ~L~i~~v~l~ 97 (814)
T TIGR00596 88 NLFLRHVYLW 97 (814)
T ss_pred HhCcCeEEEe
Confidence 3332334444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.02 Score=51.91 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=42.9
Q ss_pred HHHHhCCCCCChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 104 KAIGALNYIYPTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 104 ~~l~~~~~~~p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
..+...|. .++.|...+..+. .+++++|+|+||||||... -.++..+...+ ...|++.+-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~---~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA---PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC---CCceEEEecCCcccc
Confidence 34445554 4566776666554 4569999999999999764 34455443222 245788888888873
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.027 Score=55.18 Aligned_cols=20 Identities=30% Similarity=0.208 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
-.|++||.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998876544
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.22 Score=46.21 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEE
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~ 274 (337)
....+++||||+|.|....+. .+...+...+....+|+.
T Consensus 117 ~~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA 155 (363)
T ss_pred cCCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE
Confidence 356789999999988654432 233333333444445543
|
|
| >KOG0298|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=59.92 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=85.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcC------------CCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEE
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYK------------PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------------~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~ 195 (337)
|++++..-..|.|||.+-+...+..+-.. ......+.+|||+|. ++..|++..+..-... .+++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 45678888999999998766555442100 000123568999998 4446666655554332 256666
Q ss_pred EeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-------------CCCCCC------CccEEEEecccccccccHHH
Q psy3143 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-------------PSFSLS------DIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------------~~~~l~------~~~~iViDEad~l~~~~~~~ 256 (337)
+.|-..........--.+|||++|...|..-+... +.++.+ .+=-|++|||+++-. + ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-s-sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-S-SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-h-HH
Confidence 65532211111122234699999999998766432 111111 122489999996543 2 23
Q ss_pred HHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
....+...++.. ...+.|.|+-..+..+.
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhhhH
Confidence 333444444322 34677888655555544
|
|
| >KOG1016|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.15 Score=50.45 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 95 QMNLSRPLLKAIGAL---NYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 95 ~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+-|-+.+.+.++-. |+..++.-=.+.+.... +|-.+|+.-..|-|||+..+- ....+++.. ....||+|+
T Consensus 244 ~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVis-F~diflRhT---~AKtVL~iv 319 (1387)
T KOG1016|consen 244 DIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVIS-FSDIFLRHT---KAKTVLVIV 319 (1387)
T ss_pred ceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEee-hhHHHhhcC---ccceEEEEE
Confidence 344677777777543 33333332222222221 344688888999999997543 334444333 245699999
Q ss_pred CCHHHHHHHHHHHHHHhh---ccC-----cEEEEEeCCccHHHH-----HHHHhcCCCEEEECcHHHHHHHhcC------
Q psy3143 170 PTRELGVQVYQVTRQLAQ---FTS-----VEVALSVGGLEVKVQ-----ESVLRKCPDIVIATPGRLLDHLHNT------ 230 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~---~~~-----~~v~~~~~~~~~~~~-----~~~~~~~~~Ilv~Tp~~l~~~l~~~------ 230 (337)
|-..|-.+..+.=.++-+ ..+ +.|.++..+...-.+ ......+ .|++.-.+.+.-++...
T Consensus 320 PiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~G-GVlLvGYemfRLL~lk~~~~~gr 398 (1387)
T KOG1016|consen 320 PINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTG-GVLLVGYEMFRLLILKTLPKKGR 398 (1387)
T ss_pred ehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccC-CEEEehHHHHHHHHHhcccccCC
Confidence 988875544332222222 112 445555544332222 1222233 45555555443322210
Q ss_pred CCCC-----------------------------CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 231 PSFS-----------------------------LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 231 ~~~~-----------------------------l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
+... -..-++||.||-|++-... ..+...++.++..+++++....+.++
T Consensus 399 pkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~--A~iS~aLk~IrtrRRiVLTGYPLQNN 476 (1387)
T KOG1016|consen 399 PKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNIT--AEISMALKAIRTRRRIVLTGYPLQNN 476 (1387)
T ss_pred ccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccch--HHHHHHHHHhhhceeEEEeccccccc
Confidence 0000 1123799999999875332 34444555666677888888888887
Q ss_pred HHHHH
Q psy3143 282 VNDLV 286 (337)
Q Consensus 282 ~~~~~ 286 (337)
+.+..
T Consensus 477 LlEYw 481 (1387)
T KOG1016|consen 477 LLEYW 481 (1387)
T ss_pred hHHHh
Confidence 76654
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.057 Score=49.72 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=27.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+++||||||.|..... +.+..+++.-+....+|++| +-+..+
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit-~~~~~l 184 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILIS-HSSGRL 184 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEE-CChhhc
Confidence 45688999999999864443 44445555544445555554 434333
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.11 Score=48.75 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.+++++||+|+|||...-.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~ 74 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK 74 (394)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999987533
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.2 Score=46.37 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
.+++++||+|+|||...
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999765
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.031 Score=47.57 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|+|||.+...
T Consensus 50 ~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILC 67 (333)
T ss_pred ceEeeCCCCCchhhHHHH
Confidence 899999999999998643
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.072 Score=50.96 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHhC------C----CCEEEEcCCCCchhHHhH-HHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALL------G----RDICGCAATGTGKTAAFM-LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~------~----~~~lv~a~TGsGKT~~~~-~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
...|+|.-++-.+.- | +..+|..|-+-|||.... +.+...+... ..+..+.|++|+.+-+.+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhHH
Confidence 357899999988771 1 257899999999997665 4333344333 3466799999999999999998
Q ss_pred HHHHhhccC-cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHh-cCCCCCCCCccEEEEecccccccccHHHHHH
Q psy3143 182 TRQLAQFTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLH-NTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259 (337)
Q Consensus 182 ~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~~~l~~~~~iViDEad~l~~~~~~~~~~ 259 (337)
++.+..... ++..+ ..-.....|.+.-....+..+. .....+=.+..+.|+||.|.....+ ..+.
T Consensus 138 ar~mv~~~~~l~~~~-----------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~ 204 (546)
T COG4626 138 ARDMVKRDDDLRDLC-----------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYS 204 (546)
T ss_pred HHHHHHhCcchhhhh-----------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHH
Confidence 888775433 11000 0000000122221111222222 2223344567899999999876653 4444
Q ss_pred HHHHHc--CCCCeEEEEee
Q psy3143 260 EIIRLC--SRTRQTMLFSA 276 (337)
Q Consensus 260 ~i~~~~--~~~~q~i~~SA 276 (337)
.+..-+ .++.+++..|.
T Consensus 205 ~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 205 EAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHhhhccCcCceEEEEec
Confidence 444333 34555555443
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.012 Score=53.86 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++|++||+|+|||..+-+
T Consensus 50 SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 50 SMILWGPPGTGKTTLARL 67 (436)
T ss_pred eeEEECCCCCCHHHHHHH
Confidence 899999999999987644
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.013 Score=52.75 Aligned_cols=60 Identities=25% Similarity=0.246 Sum_probs=44.0
Q ss_pred CCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 110 NYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|...++-|...+..+..++ +++++|.||||||+.. -++.... + ..-|+|++--|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL--Nal~~~i--~---~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL--NALSGFI--D---SDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH--HHHHhcC--C---CcccEEEEeehhhhcc
Confidence 56677899999998888877 9999999999999752 2222211 1 2338999998888843
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.044 Score=51.28 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
....+++||||+|.|..... +.+..+++.-+.. -++++++|-+..+..-+.
T Consensus 115 ~~~~kViiIDead~m~~~aa-naLLk~LEep~~~-~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERAA-NALLKAVEEPPPR-TVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcCHHHH-HHHHHHhhcCCCC-CeEEEEECChHHChHHHH
Confidence 45778999999999864432 3344444433334 445555555555544333
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.018 Score=56.37 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH-HHHHHHhhcc
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY-QVTRQLAQFT 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~-~~~~~l~~~~ 189 (337)
..+|+|...+..+... +.|+++.++-+|||.+.+..+...+- . ....+|++.||.++|.... ..+..+.+.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~-~----~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID-Q----DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE-e----CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 3589999998887654 48899999999999965444433332 1 2456999999999999875 5666555443
Q ss_pred CcEEEEEeC----CccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 190 SVEVALSVG----GLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 190 ~~~v~~~~~----~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
..--..+.. ..........+.. ..+.++.. ..-..+.-..++++++||+|.+..
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~g-g~l~~~ga-------~S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPG-GFLYLVGA-------NSPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCC-CEEEEEeC-------CCCcccccCCcCEEEEechhhccc
Confidence 211111111 1111111122222 23443331 121234456789999999999853
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.058 Score=47.53 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=27.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.|.-++|+|++|+|||...+..+.+.+. .+.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEE
Confidence 4567899999999999887776666552 245688887
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.087 Score=51.34 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=24.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+++||||+|.|....+ +.+...+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 45688999999998865443 33333444444555555544
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.053 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHh----CCC-CEEEEcCCCCchhHHhHH
Q psy3143 113 YPTPIQAATIPVAL----LGR-DICGCAATGTGKTAAFML 147 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.+.+++..+. .+. .++++|++|+|||+....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 34566666665543 223 578999999999987543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.3 Score=39.95 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=28.9
Q ss_pred CccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh
Q psy3143 237 DIEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 237 ~~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
..+++|+|....+. +..+...+..+........-+++++|+...+..+....+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 46678888877542 223344444444433445556667776555544444444
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.065 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.5
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999876543
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.43 Score=43.15 Aligned_cols=39 Identities=18% Similarity=0.425 Sum_probs=24.8
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...++|||||+|.+.... ...+..++...+..+.+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 346799999999875433 344555555555566655544
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.12 Score=52.09 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=24.2
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
...++||||+|.+..... ..++..+. ..++++++||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~qQ----daLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQ----DALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHHH----HHHHHHhc-CceEEEEEecCCCh
Confidence 456899999998753221 22333333 35677778775543
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.027 Score=48.88 Aligned_cols=39 Identities=26% Similarity=0.059 Sum_probs=28.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..|.-++++|++|+|||...+..+++.+.. .+.+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEe
Confidence 356678999999999998766656665532 145688887
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.17 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
+.|+|...+..+. .++ -.+++||.|.||+..+.. +...++.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC 51 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLC 51 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 3566666665543 444 588999999999976544 3344443
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.11 Score=58.04 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhH---HHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 112 IYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFM---LPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~---~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
..+++.|..|+..++.+ +-++|.|..|+|||.... -++.+.+. ..+.+++.++||...+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-----hcCCeEEEEeChHHHHHHH
Confidence 35799999999998866 456789999999998752 23333321 1356799999997776554
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.23 Score=45.27 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHh--CCC---CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 115 TPIQAATIPVAL--LGR---DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 115 ~~~Q~~~i~~~~--~~~---~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
+|||...+..+. .+| -.+++||.|+|||..+...+ ..++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a-~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA-QALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH-HHHc
Confidence 466777776665 233 57899999999998765543 3443
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.054 Score=51.62 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|.-+++.|++|+|||...+..+..... .+.+++|+.- .+-..|+...+..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3456889999999999876665554431 2557888874 344566655555443
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.027 Score=53.23 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
++.|...+..+++.. =+++.||||||||.. +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 677777777776654 467899999999987 345566653
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.049 Score=49.00 Aligned_cols=67 Identities=28% Similarity=0.331 Sum_probs=42.3
Q ss_pred HHHHHhCCCCCChHHHHHHHHHH-hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVA-LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+..|...|. +++.|...+..+ ..+++++++|+||||||... -.++..+... ....|++++-.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~---~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN---DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc---CCCceEEEECCchhhc
Confidence 444555554 344555555544 45669999999999999764 3344444221 1245788888888873
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.039 Score=45.26 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=78.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-+.|....|-|||.+++=-++..+ +.+.||+|+.=-+.-..+ .....+....++.+... +.......
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAa------G~G~rV~iiQFlKg~~~~--GE~~~l~~~~~v~~~~~--g~~~~~~~--- 89 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIA------GQGTPVLIVQFLKGGIQQ--GPDRPIQLGQNLDWVRC--DLPRCLDT--- 89 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHh------cCCCEEEEEEEecCCCcc--hHHHHHHhCCCcEEEEC--CCCCeeeC---
Confidence 456777899999999887777766 467889998744332100 11111111113333221 11100000
Q ss_pred hcCCC-EEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 210 RKCPD-IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 210 ~~~~~-Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
...+ .-.......+..... .+.-..+++||+||+-..++.++. ..+..+++..+...-+|+..-..|+.+.+.+
T Consensus 90 -~~~~~~~~~~~~~~~~~a~~--~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 90 -PHLDESEKKALQELWQYTQA--VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred -CCcCHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 0000 000011122332222 223456899999999988777743 4666778888888888888888888887765
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 167 D 167 (178)
T PRK07414 167 D 167 (178)
T ss_pred C
Confidence 4
|
|
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.13 Score=46.76 Aligned_cols=62 Identities=24% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCCCCcCCccccCCCCHHHHHHHHhCCCCCC-hHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYP-TPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p-~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|....-+|.+++=...+...|++.=.-.. +|-.-.--..+.-.+.+++.||+|+|||.++
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 4455566789999888888888765422111 1111111111223468999999999999765
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.057 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPIL 150 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l 150 (337)
|+-+.+.||||+|||+.....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34577999999999998755443
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=50.24 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.6
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
..|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999876543
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.11 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.3
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.+|++||.|+|||.+..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998875543
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.28 Score=43.86 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999876
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.047 Score=54.59 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=37.9
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
-++|+|.-|.+.+.-....+.++++..|.+.++++.|-+-|+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 599999999999988889999999999999999998877664
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.053 Score=49.52 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=30.4
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+..+++++|+|+||||||... -.++..+ ....|++.+--+.|+.
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~i------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREI------PAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhC------CCCCeEEEecCCCccc
Confidence 345779999999999999764 3445544 1245677776776763
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.12 Score=43.04 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++||||+|.|..... ..+...++..+... .++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~~-~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAA-NALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHHH-HHHHHHhcCCCCCe-EEEEEEC
Confidence 46788999999999865432 33333444433333 4444444
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.026 Score=51.69 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=31.0
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+..+++++|+|+||||||... -.++..+ ....+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAI------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHccc------CCCCCEEEECCCcccc
Confidence 446779999999999999764 3344433 1245688888888774
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.028 Score=55.20 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=31.1
Q ss_pred EEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 216 VIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 216 lv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
+=+-||++.+-+...+..+ -++++||+|.|.....++=-..++..+
T Consensus 400 IGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 3357999999987654433 479999999997654444444455444
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.19 Score=43.24 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=31.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|..+++.|++|+|||......+.+.+. .+..++++.. .+...++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 4668899999999999876555554442 1345777764 3334454444443
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.096 Score=51.33 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.8
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+.++++||.|+|||..+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999998875543
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.26 Score=41.72 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|.-+.++|++|+|||...+..+.+... .+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC
Confidence 3456789999999999887766665542 24567777764
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.42 Score=45.23 Aligned_cols=86 Identities=24% Similarity=0.222 Sum_probs=42.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccH-HHH-
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV-KVQ- 205 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~-~~~- 205 (337)
-++++|++|+|||+...-.+..... + .+.+++++. +.|..+.+ .+..++...++.+.....+... ...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~-~----~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P~~i~~ 172 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKK-K----QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSPVEIAR 172 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-h----CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCHHHHHH
Confidence 4778999999999886544433211 1 133455554 34444433 2333333344544333222221 111
Q ss_pred ---HHHHhcCCC-EEEECcHHH
Q psy3143 206 ---ESVLRKCPD-IVIATPGRL 223 (337)
Q Consensus 206 ---~~~~~~~~~-Ilv~Tp~~l 223 (337)
......++| |+|=|||++
T Consensus 173 ~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 173 RALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHhcCCCEEEEeCCCcc
Confidence 112234454 778888865
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >KOG0732|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.024 Score=58.17 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=78.1
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCC---CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYI---YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~---~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
...-.|.+.|....+...|+.+-.. .|.-+|.-. +.--+.++++||+|+|||+.+-..+-+ +
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~araLa~~-~----------- 323 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLMARALAAA-C----------- 323 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHHHHhhhhh-h-----------
Confidence 3445688888888888888776432 222222211 223467999999999999864221111 1
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCC---CEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP---DIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
...-++.+ .+ .+++. .--|+.+++=+.++... ..-.....+
T Consensus 324 --------------s~~~~kis--------ff------------mrkgaD~lskwvgEaERqlrllFee--A~k~qPSII 367 (1080)
T KOG0732|consen 324 --------------SRGNRKIS--------FF------------MRKGADCLSKWVGEAERQLRLLFEE--AQKTQPSII 367 (1080)
T ss_pred --------------cccccccc--------hh------------hhcCchhhccccCcHHHHHHHHHHH--HhccCceEE
Confidence 00001100 00 00111 23466776656555442 123456788
Q ss_pred EEecccccc--c-----c---cHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 242 VLDEADRML--D-----E---HFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 242 ViDEad~l~--~-----~---~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
.+||+|-+. . + +....+..++.-++...|+++++||..++
T Consensus 368 ffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 368 FFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred eccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 999999432 1 1 12223334445567788999999996654
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=48.17 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=33.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|.-+++.|++|+|||...+..+..... .+.+++|+.-. +-..|+...+..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 3456889999999999876655544331 24578888754 3345655544443
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.79 Score=44.12 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhc
Q psy3143 136 ATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRK 211 (337)
Q Consensus 136 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~ 211 (337)
-.++|++..-++++.+.+- .+-.|.+||-+-+.+-|.|++..+. .+.++++..++|........ ++...
T Consensus 365 lvF~gse~~K~lA~rq~v~----~g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA----SGFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred heeeecchhHHHHHHHHHh----ccCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhcc
Confidence 3577888888787777662 2246779999999999999887776 45578999999986554433 33345
Q ss_pred CCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 212 ~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
...++||| +.+.+ .++|..+.+||.+..-.- ...|.+++-+.-+..+...-+.+++-+
T Consensus 438 ~IwvLicT-----dll~R--GiDf~gvn~VInyD~p~s-~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 438 KIWVLICT-----DLLAR--GIDFKGVNLVINYDFPQS-DLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred CeeEEEeh-----hhhhc--cccccCcceEEecCCCch-hHHHHHHhhccCCCCCCcceEEEeccc
Confidence 67999999 34544 689999999999766531 123444443333333444445555554
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.29 Score=44.82 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhC--CC---CEEEEcCCCCchhHHhHHHHHHHhhcC
Q psy3143 115 TPIQAATIPVALL--GR---DICGCAATGTGKTAAFMLPILERLLYK 156 (337)
Q Consensus 115 ~~~Q~~~i~~~~~--~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~ 156 (337)
+|||...+..+.. ++ -.+++||.|.||+..+.. +...++..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC~ 48 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLCE 48 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcCC
Confidence 4667777666543 33 578999999999987644 34455443
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.23 Score=42.97 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=33.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|.-+++.|++|+|||......+...+. .+.+++++.--.. ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK------QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh------CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 457889999999999877666655542 2556777765433 34555555544
|
|
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.059 Score=50.68 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc------
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF------ 188 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~------ 188 (337)
...|.++.-..-.|+- .|.|-.|||||...+.-+.+.-.++ +.-+++|.+-|+.|+.++.+...+++..
T Consensus 164 D~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn----Pd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~p 238 (660)
T COG3972 164 DTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN----PDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQP 238 (660)
T ss_pred cchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC----CCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4456666544445555 6788999999987665554443222 3557999999999999999888877621
Q ss_pred --cCcEEEEEeCCccHHHHHHHHhcCC---CEEEEC----cHHHH-HHHhcCCCCCCCCccEEEEecccccccccHHHHH
Q psy3143 189 --TSVEVALSVGGLEVKVQESVLRKCP---DIVIAT----PGRLL-DHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQM 258 (337)
Q Consensus 189 --~~~~v~~~~~~~~~~~~~~~~~~~~---~Ilv~T----p~~l~-~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~ 258 (337)
...-++.-+||.............+ .+-++- -..+. .++.. .-+..-+++|.|||++... ++|...+
T Consensus 239 dW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~--~~~~~~yD~ilIDE~QDFP-~~F~~Lc 315 (660)
T COG3972 239 DWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD--INNKKAYDYILIDESQDFP-QSFIDLC 315 (660)
T ss_pred CccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh--hhccccccEEEecccccCC-HHHHHHH
Confidence 1133444556654433332222111 111111 01111 22221 1226678999999999753 4555555
Q ss_pred HHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 259 KEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 259 ~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
..+.+ ...+++. | -++++++...-|+.|.-++-
T Consensus 316 f~~tk---d~Krlvy--A--yDelQnls~~~m~ppe~iFg 348 (660)
T COG3972 316 FMVTK---DKKRLVY--A--YDELQNLSNVKMRPPEEIFG 348 (660)
T ss_pred HHHhc---CcceEEE--e--hHhhhcccccCCCCHHHhcC
Confidence 44433 2222222 1 25555555555555555543
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=50.18 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+++||||||.|....+ ..+...+...+..+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 46789999999998865443 34444555555566666544
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.7 Score=44.60 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++||||||.|....+ +.+...+...+ ...++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp-~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPP-PRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCC-CCeEEEEEEC
Confidence 46789999999998764443 23333333323 3334444444
|
|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.33 Score=44.65 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-H---HHHHHHhhc-cCcEEEEEeCCccHHHHH
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-Y---QVTRQLAQF-TSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~---~~~~~l~~~-~~~~v~~~~~~~~~~~~~ 206 (337)
++.++.|+|||.+....++..++..+. ...++++ ||..-+... . ..+..+... ............-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI----- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE-----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE-----
Confidence 578899999999988877777764432 2345555 666554442 2 233333322 1222211111100
Q ss_pred HHHhcCCCEEEECcHH--HHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc--hhH
Q psy3143 207 SVLRKCPDIVIATPGR--LLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT--DAV 282 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~--l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~--~~~ 282 (337)
.+.++..|.+.+-+. -...+.. ..+.++++||+-.+.+..+...+............ +++|.|.. ..+
T Consensus 72 -~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 72 -ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGWF 143 (384)
T ss_dssp -EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSHH
T ss_pred -EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCce
Confidence 013444566666321 1111111 45789999999887666665555544443332222 24454433 335
Q ss_pred HHHHHhhCCCC
Q psy3143 283 NDLVSVSLTRP 293 (337)
Q Consensus 283 ~~~~~~~~~~p 293 (337)
..+......+.
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55666555544
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.27 Score=44.99 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 115 TPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 115 ~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
+|||...+..+. .|| -.+++||.|+||+..+... ...++.
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~-A~~LlC 50 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL-SRWLMC 50 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH-HHHHcC
Confidence 456666665543 444 5779999999999876543 444443
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.38 Score=48.93 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=26.0
Q ss_pred cEEEEecccccccccH----HHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 239 EVLVLDEADRMLDEHF----ASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 239 ~~iViDEad~l~~~~~----~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
.+|+|||+|.+...+- ...+..+++.+-...++.++.||-+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 4899999999865331 12233334333234456666777666643
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.13 Score=49.59 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.++++||+|+|||+..
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 468999999999999864
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.12 Score=44.28 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|.-+.+.|++|+|||...+..+...+......+.+.+++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456789999999999877665555442221112236788887643
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.19 Score=43.95 Aligned_cols=53 Identities=21% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|..+++.|++|+|||...+..+.+.+. .+.+++|+. +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567889999999999877666666552 244577776 4444555655555543
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.42 Score=43.05 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.+++++||+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999997654
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.15 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=16.9
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+.+|++||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 467999999999998865543
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.023 Score=49.98 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHhCCC----CEE-EEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 121 TIPVALLGR----DIC-GCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 121 ~i~~~~~~~----~~l-v~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+..++.|. .+. ++|++|||||-..+..++...+.....+.+.+++||--....
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 455566552 343 899999999977666555555443334457789999755443
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.018 Score=53.82 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=37.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
++++.|+||||||.++++|.+... +..+||+=|.-++........+.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988866432 356999999999987766655543
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.7 Score=43.86 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=16.1
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
-.|++||.|+|||.++.+.+
T Consensus 42 AYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 35899999999998875543
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.081 Score=45.75 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.++|.. +...-+..|.-++|.|++|+|||...+..+.+.+. .+.+++|++-- +-..|+...+..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 345522 23344556678899999999999887776666652 24467777532 2245666666554
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.18 Score=48.64 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.-+++.||+|+|||+..+..+...+. .+.+++|++ ..+-..|+...+..++
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACA------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 46899999999999987777666652 355788877 5566677777776654
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.073 Score=49.30 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+..++++||||||||... ..++..+.... ...+++.+--..|+
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~---~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETY---PDRKIVTYEDPIEY 191 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcC---CCceEEEEecCchh
Confidence 3457899999999999764 44555553221 12345555444343
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.035 Score=47.86 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q psy3143 131 ICGCAATGTGKTAAF 145 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~ 145 (337)
++|.|+.|||||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 479999999999853
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.063 Score=47.52 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=30.1
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
..+.+++++|+||||||... -.++..+-.. ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-----ccceEEeccccce
Confidence 45679999999999999875 4445555211 3578888877776
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.47 Score=40.64 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=37.4
Q ss_pred CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHH----HHHHHHHHcCCCCeEEEEeecCchhHHHHHHh
Q psy3143 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFAS----QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288 (337)
Q Consensus 214 ~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~----~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 288 (337)
..++.+...|+..+... .-....++++|||++=.-+.. .|.. ....+...+...++++.+...-+.++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a-~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDA-IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHH-HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555555565555321 111234578999994322211 1221 11223333343566777777766777666654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.049 Score=45.06 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcC-CCCeEEEEee
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQTMLFSA 276 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~-~~~q~i~~SA 276 (337)
..-+++++||...-++......+..++..+. ...++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 5568999999999888776666666655543 3356665554
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.037 Score=45.80 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=26.7
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
+-.++++++.|++|+|||..+...+.+.+ . .+..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~-~-----~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI-R-----KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH-H-----TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc-c-----CCcceeEe-ecCceecc
Confidence 44678999999999999987654443333 2 24456665 44455444
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.25 Score=50.66 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+..++++||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999997653
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.05 Score=50.04 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+|+++.||+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999653
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=1 Score=43.10 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=16.2
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
..+++||+|+|||.++...+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998865543
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.27 Score=44.64 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=33.3
Q ss_pred EEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 215 IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 215 Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
|-|-....+.+.+... ......+++|||+||.|.... .+.+.+++..-+ +..+|+.|.
T Consensus 104 I~id~ir~i~~~l~~~--p~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRP--PLEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccC--cccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 4444444555555442 224678999999999986443 344444555444 554444443
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=46.27 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+.++++||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999764
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.7 Score=42.07 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 115 TPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 115 ~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
.|||...+..+. .|+ -.+++||.|.||+..+...+ ..++.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A-~~llC 50 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA-QWLMC 50 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH-HHHcC
Confidence 455665555443 444 56799999999998765433 44443
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.18 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.1
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
+.+-.+.|++..||+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556677899999999999996664
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.087 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.-++|+||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4568999999999999864 3455554
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.22 Score=50.81 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=29.0
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|++++-....++.+..+ .+..|..++... +..++.++++||+|+|||...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 4566666555555444332 122222222211 124578999999999999764
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.52 Score=48.03 Aligned_cols=19 Identities=26% Similarity=0.114 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.++++.||+|+|||...-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 3899999999999987544
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.1 Score=40.73 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCccEEEEeccccccc-ccHHHHHHHHHHHc------CCCCeEEEEeecCchhHHHHHHhh
Q psy3143 236 SDIEVLVLDEADRMLD-EHFASQMKEIIRLC------SRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 236 ~~~~~iViDEad~l~~-~~~~~~~~~i~~~~------~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
.++++||||=+-++.. ......+..+.+.+ .+...++.++||...+....+..|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4467788877766542 23344555544432 233346777888665433334444
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.33 Score=49.54 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++.||+|+|||+.+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999765
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.042 Score=52.86 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=39.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.++++.||||||||..+++|.+-.. +.-+||+=|-.+|.......++..+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~--------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY--------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc--------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976331 2258888899999887776666544
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.21 Score=45.75 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=34.1
Q ss_pred cCCccccCCCCHHHHHHHHhCC-CCCC-------------hH-HHHHH-H----HHHhCC-----CCEEEEcCCCCchhH
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALN-YIYP-------------TP-IQAAT-I----PVALLG-----RDICGCAATGTGKTA 143 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~-~~~p-------------~~-~Q~~~-i----~~~~~~-----~~~lv~a~TGsGKT~ 143 (337)
....|..++....|++.|..-= -..| -. ++..+ + |...+| +.++..||+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 4457888888888888875421 1111 11 12221 1 233344 479999999999997
Q ss_pred Hh
Q psy3143 144 AF 145 (337)
Q Consensus 144 ~~ 145 (337)
.+
T Consensus 261 LA 262 (491)
T KOG0738|consen 261 LA 262 (491)
T ss_pred HH
Confidence 53
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.1 Score=46.85 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhh--cCCC-------------------------CCCCeeEEEEcC
Q psy3143 118 QAATIPVALLGRDICGCAATGTGKTAAFMLPILERLL--YKPR-------------------------DDQNTRVLVLVP 170 (337)
Q Consensus 118 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~--~~~~-------------------------~~~~~~~lil~P 170 (337)
|++.+..+...-||+--..|--=+|+-..+.-+.-+. ..++ -.+++++.||.|
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~N 811 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHN 811 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEec
Confidence 6666666666667777777777777654333222210 0010 035789999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
..+-..++...++.+.. ..+|++.+|........ .++.+.+||+|||. .+.+ .++..+...|||+-|
T Consensus 812 rV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEt--GIDIPnANTiIIe~A 882 (1139)
T COG1197 812 RVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIET--GIDIPNANTIIIERA 882 (1139)
T ss_pred chhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeec--CcCCCCCceEEEecc
Confidence 99999999999998764 57899999998766554 45567899999994 3444 788999999999999
Q ss_pred cccccccHHHHHHHHHHHc
Q psy3143 247 DRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~ 265 (337)
|++. ..++..+....
T Consensus 883 D~fG----LsQLyQLRGRV 897 (1139)
T COG1197 883 DKFG----LAQLYQLRGRV 897 (1139)
T ss_pred cccc----HHHHHHhcccc
Confidence 9864 34455554444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.43 Score=49.87 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=35.2
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
-+||||++|.+.+......+..+++..+....+|+.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 589999999987677777899999999988899888877544
|
|
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.34 Score=43.44 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=63.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH-----------HHHHHHHHHHHHHhhccCcEEEEE
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR-----------ELGVQVYQVTRQLAQFTSVEVALS 196 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~-----------~La~q~~~~~~~l~~~~~~~v~~~ 196 (337)
+|-++++||+|+|||.. .-++.+++--+..+....-.+|=.... -|+.++++.+.++...-+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45688999999999964 345566664333332223344444444 356666777777776655555555
Q ss_pred eCCc---------------c---------HHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 197 VGGL---------------E---------VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 197 ~~~~---------------~---------~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+... . .-.|...+++.++++|-|...|.+ +++.-.+|-||-..
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi~~ 322 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADIVF 322 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhhee
Confidence 4321 1 011234455667777776554444 34556677788543
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.16 Score=48.44 Aligned_cols=38 Identities=37% Similarity=0.388 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.|...+..++ .+.-++++||||||||... ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 344555555444 3446889999999999864 3455554
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.23 Score=46.28 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=32.1
Q ss_pred CccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhHH
Q psy3143 237 DIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 237 ~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~ 283 (337)
++++++||.++.+... .+...+..++..+ ..+.|+++.|...|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6899999999987654 3444455555444 334488888877777755
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.36 Score=41.37 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|.-+++.|++|+|||...+..+...+. .+.+++++... +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 3557889999999999876655555542 24567777654 3456666665554
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1 Score=40.62 Aligned_cols=129 Identities=19% Similarity=0.301 Sum_probs=69.2
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
++++|-+|+|||+...-.+ +++. ..+.++++.+ -.|+-|.. .+..+++..++.+.....|.
T Consensus 142 il~vGVNG~GKTTTIaKLA-~~l~-----~~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~-------- 204 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLA-KYLK-----QQGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGA-------- 204 (340)
T ss_pred EEEEecCCCchHhHHHHHH-HHHH-----HCCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCC--------
Confidence 6789999999998854322 2332 1355666665 23444433 23333344456654421111
Q ss_pred HhcCCCEEEECcHHH-HHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCC------eEEEEeecCch
Q psy3143 209 LRKCPDIVIATPGRL-LDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTR------QTMLFSATMTD 280 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l-~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~------q~i~~SAT~~~ 280 (337)
-|..+ .+.++.. .-+.+++|++|=|=+|... +....+..|.+.+.+.. -++.+=||...
T Consensus 205 ----------DpAaVafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 205 ----------DPAAVAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred ----------CcHHHHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 11111 1122211 1345677778877777654 46677777777665443 33444888887
Q ss_pred hHHHHHHhh
Q psy3143 281 AVNDLVSVS 289 (337)
Q Consensus 281 ~~~~~~~~~ 289 (337)
+-.+-++.|
T Consensus 272 nal~QAk~F 280 (340)
T COG0552 272 NALSQAKIF 280 (340)
T ss_pred hHHHHHHHH
Confidence 755545443
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.48 Score=45.28 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHhCCCCCChHHHHHHHHH-------HhC-----CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCC
Q psy3143 95 QMNLSRPLLKAIGALNYIYPTPIQAATIPV-------ALL-----GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN 162 (337)
Q Consensus 95 ~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-------~~~-----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 162 (337)
.+|.+++-++.+...|.-.-.+--.+.+.. +.. -..+++.||.|||||..+.-.++.. .-
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S--------~F 564 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS--------DF 564 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc--------CC
Confidence 367888888888777654333332333221 111 1268999999999997654333221 24
Q ss_pred eeEEEEcCC
Q psy3143 163 TRVLVLVPT 171 (337)
Q Consensus 163 ~~~lil~Pt 171 (337)
|.+=|+.|.
T Consensus 565 PFvKiiSpe 573 (744)
T KOG0741|consen 565 PFVKIISPE 573 (744)
T ss_pred CeEEEeChH
Confidence 556666664
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.37 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.9
Q ss_pred CEEEEcCCCCchhHHhHHH
Q psy3143 130 DICGCAATGTGKTAAFMLP 148 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~ 148 (337)
-.+++||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999887553
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.15 Score=50.27 Aligned_cols=44 Identities=30% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHhCCCCCChHHHHHHHHHHhC--CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 106 IGALNYIYPTPIQAATIPVALL--GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 106 l~~~~~~~p~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
|..+|+ .+.|.+.+..++. +.-++++||||||||+.. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 4556666665544 346789999999999874 4455555
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.75 Score=45.76 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
+...+++||||||.|....+ ..+...+...+... +++|.+|-.
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~-naLLK~LEepp~~t-ifIL~tt~~ 161 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAF-NAFLKTLEEPPSYA-IFILATTEK 161 (614)
T ss_pred cCCcEEEEEECcccCCHHHH-HHHHHHHhCCCCCe-EEEEEeCCc
Confidence 56789999999999864332 33444444433333 455555533
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.25 Score=42.58 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++.++++|++|||||....
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4458999999999997544
|
|
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.057 Score=53.19 Aligned_cols=50 Identities=22% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
+++++.||||||||..+++|.+-.. +.-+||+=|--|+........++++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4799999999999999999987653 3458999999999887777666543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.24 Score=51.48 Aligned_cols=79 Identities=13% Similarity=0.255 Sum_probs=62.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+++++|++|+++-+..++..++.+. .+.++..++|+........ +.....+|+|||. .+.. .+++.+
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~--GIDIp~ 730 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIET--GIDIPN 730 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--cccccc
Confidence 5689999999998888888888753 3578999999987655443 3346689999994 3433 789999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
+++||+..+++.
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999999874
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.6 Score=40.55 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 130 DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.++++||+|+|||...... ...+
T Consensus 41 ~~L~~G~~G~GKt~~a~~l-a~~l 63 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL-ARKI 63 (367)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHh
Confidence 6889999999999765443 4444
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.28 Score=52.15 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=61.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+++++|++|+++-+..+.+.+.... .+.++..++|+.+...... +..+..+|+|||. .+.+ .+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iier--GIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET--GIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhc--cccccc
Confidence 5689999999998888888887754 3467888999987665433 3446789999994 3333 789999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
+++||++.+|++
T Consensus 880 v~~VIi~~ad~f 891 (1147)
T PRK10689 880 ANTIIIERADHF 891 (1147)
T ss_pred CCEEEEecCCCC
Confidence 999999999864
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.43 Score=43.36 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|+-+.+.||+|||||...+..+.+... .+.+++++.+-..+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCCEEEECccccHHH
Confidence 3557889999999999887766665542 3567898887655543
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.6 Score=42.30 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=31.6
Q ss_pred cCCccccCCCCHHHHHHHHhC--CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 89 ENSSFHQMNLSRPLLKAIGAL--NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~--~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
...+|.++.-.+.+...+... -+..|..++... ....+.++++||+|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 345788887666665554321 122233232211 112357999999999999764
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.96 Score=44.15 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh-ccCcE-EEEEeCCccHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVE-VALSVGGLEVKVQ 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~-~~~~~-v~~~~~~~~~~~~ 205 (337)
.|-.+.--|--.|||+. +.|++..++.. ..+.++.|++.-+-.++-+++.+...+. ..+-+ +...-+
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s---~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKN---IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD------- 270 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHh---hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-------
Confidence 45677788999999974 67777777643 3477899999999888887776654332 22211 111111
Q ss_pred HHHHhcCCCEEEECcHHHHHH----HhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecC
Q psy3143 206 ESVLRKCPDIVIATPGRLLDH----LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATM 278 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~----l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~ 278 (337)
-.|.+.-||.=... -.+...+.=.++.++++||||-+-. ..+..|+..+ ..++++|..|.|-
T Consensus 271 -------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 -------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred -------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCC
Confidence 12333333221000 1122344456789999999996643 2334444433 4567788888774
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.1 Score=42.75 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++.||+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999865
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.29 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=16.8
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 130 DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.++++||+|+|||..... +...+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Confidence 578999999999976533 34444
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2 Score=39.12 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+.+.++|+.|.|||...-. .++.+ ....-.-++....+..+++.+..+. |..
T Consensus 66 ~GlYl~GgVGrGKT~LMD~-Fy~~l--------p~~~k~R~HFh~FM~~vH~~l~~l~-----------g~~-------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDL-FYESL--------PGERKRRLHFHRFMARVHQRLHTLQ-----------GQT-------- 117 (367)
T ss_pred ceEEEECCCCccHHHHHHH-HHhhC--------CccccccccHHHHHHHHHHHHHHHc-----------CCC--------
Confidence 5688999999999975322 22222 1111223456677777777777654 110
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH---
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVND--- 284 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~--- 284 (337)
|.+ | .+..-+ ..+.++++|||.+. .+-+=.-.+.++++.+ .+++.+++.|.|.|+++-.
T Consensus 118 -----dpl---~-~iA~~~-------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGl 180 (367)
T COG1485 118 -----DPL---P-PIADEL-------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGL 180 (367)
T ss_pred -----Ccc---H-HHHHHH-------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccch
Confidence 111 0 111111 34568999999984 3333334455555443 6688899999999987532
Q ss_pred -------HHHhhCCCCeEEEeCCC-ccccCCeeEEEEEecCcc
Q psy3143 285 -------LVSVSLTRPVRVFVDNN-HEVALNLRQEFVSFSNID 319 (337)
Q Consensus 285 -------~~~~~~~~p~~i~~~~~-~~~~~~i~q~~~~~~~~~ 319 (337)
.+...-..-.++.++.. ........|--+++.+.+
T Consensus 181 qR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl~ 223 (367)
T COG1485 181 QRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPLD 223 (367)
T ss_pred hHHhhHHHHHHHHHheEEEEecCCccccccccccCceeecCCc
Confidence 12222245667777665 333344444333334433
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=24.2
Q ss_pred EEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 215 IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 215 Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
-+=+-||++.+.+..-+.-+ -++.|||+|.+..
T Consensus 487 YVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~ 519 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGS 519 (906)
T ss_pred eeccCChHHHHHHHhhCCCC----ceEEeehhhhhCC
Confidence 34467999999997643222 4789999999873
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.034 Score=53.27 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=42.2
Q ss_pred EECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 217 IATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 217 v~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
|-+||-..++-.. .+...+-++.|+|||-.-++......+.++.+... +-++|-.....+..+..
T Consensus 570 vLS~GEqQRLa~A--RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 570 VLSPGEQQRLAFA--RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWKFHD 634 (659)
T ss_pred hcCHHHHHHHHHH--HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHhhhh
Confidence 4566655544332 23356778999999998888777777777777654 44556666666555443
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.35 Score=44.11 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=28.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
.+|++||+|+|||..+-+.+.. ......+.+=+..|.+-...+...+.
T Consensus 164 SmIlWGppG~GKTtlArlia~t------sk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST------SKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh------cCCCceEEEEEeccccchHHHHHHHH
Confidence 7999999999999765432221 11223456666666555544444333
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.72 Score=47.85 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=26.6
Q ss_pred ccEEEEecccccccccH---HHHHHHHHHHcCCCCeEEEEeecCchhHHH
Q psy3143 238 IEVLVLDEADRMLDEHF---ASQMKEIIRLCSRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 238 ~~~iViDEad~l~~~~~---~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 284 (337)
-.+|+|||+|.+...+. ......+++..-....+.++.||-.++...
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 45899999999874221 112223333222344566677776666544
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.5 Score=43.32 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|+-+.|.||+|||||...+..+.+... .+.+++|+-.-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchHH
Confidence 3557789999999999988776666542 3667888887665543
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.21 Score=44.09 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhC--CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVALL--GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.|.+.+..++. +..++++|+||||||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 3445555554443 336889999999999865 3344444
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.29 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhHHhHHH-HHHHh
Q psy3143 131 ICGCAATGTGKTAAFMLP-ILERL 153 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~-~l~~l 153 (337)
.++.|.+|||||+..+.. ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 478999999999987653 44444
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.19 Score=51.86 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHh----CC--CCEEEEcCCCCchhHHhHH
Q psy3143 114 PTPIQAATIPVAL----LG--RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~--~~~lv~a~TGsGKT~~~~~ 147 (337)
|---|...+..++ .+ .++++.||+|+|||...-.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 3333555554443 32 3899999999999987543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.2 Score=44.10 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.6
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 789999999999986654
|
|
| >PRK07413 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.18 Score=46.58 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=76.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCe------eEEEEcCCHHH---HHHHHHHHHHHhhc-cC-cEEEEEeC
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNT------RVLVLVPTREL---GVQVYQVTRQLAQF-TS-VEVALSVG 198 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~------~~lil~Pt~~L---a~q~~~~~~~l~~~-~~-~~v~~~~~ 198 (337)
.+.|....|-|||.+++=-++..+ +.+. +|+|+.=-+.- .++ ..+..+... .+ +.+. .+|
T Consensus 202 ~i~VYTG~GKGKTTAAlGlAlRA~------G~G~~~~~~~rV~ivQFlKg~~~~GE~--~~l~~l~~~~~~~v~~~-~~g 272 (382)
T PRK07413 202 GIEIYTGEGKGKSTSALGKALQAI------GRGISQDKSHRVLILQWLKGGSGYTED--AAIAALRESYPHLVDHL-RSG 272 (382)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHh------cCCCCcccCceEEEEEECCCCCChHHH--HHHHHhhhhCCCcEEEE-Ecc
Confidence 467778899999999887777766 2343 78888744432 111 122222110 11 2211 111
Q ss_pred Cc--cHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH--HHHHHHHHcCCCCeEEEE
Q psy3143 199 GL--EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS--QMKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 199 ~~--~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~--~~~~i~~~~~~~~q~i~~ 274 (337)
.. ....+ +...-.......+..... .+.-..+++||+||+-..+..++.+ .+..+++..|...-+|+.
T Consensus 273 ~~~~~~~~~------~~~~~~~~a~~~~~~a~~--~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLT 344 (382)
T PRK07413 273 RDAIVWRGQ------QQPIDYVEAERAWEIARA--AIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIIT 344 (382)
T ss_pred CCCceeecC------ChHHHHHHHHHHHHHHHH--HHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEe
Confidence 11 00000 000000011233433332 2333568999999999888777543 666777777777777766
Q ss_pred eec-CchhHHHHHH
Q psy3143 275 SAT-MTDAVNDLVS 287 (337)
Q Consensus 275 SAT-~~~~~~~~~~ 287 (337)
.-. .|+.+.+++.
T Consensus 345 GR~~ap~~lie~AD 358 (382)
T PRK07413 345 GRCKNQPAYFDLAS 358 (382)
T ss_pred CCCCCCHHHHHhCc
Confidence 665 7788877664
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.23 Score=47.85 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+-|.+.+..++..+ -++++||||||||... ..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 455666666655433 4689999999999874 3345544
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.26 Score=42.22 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
|.-+.+.|++|+|||...+..+.+.+. .+.+++++.--
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~------~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEECC
Confidence 456789999999999887666665542 24567777543
|
|
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.11 Score=50.82 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 113 YPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 113 ~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
+|+.||.+.+..+ -.|+--|+.+|||+|||+..+=.++.+|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 5788998887654 4688889999999999998766666665
|
|
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.6 Score=38.51 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=48.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEE
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~ 314 (337)
-..++++||-|||.+... -...+++-+......+++|+.--..++-+.-+-. +=.+++
T Consensus 125 qr~fKvvvi~ead~LT~d-AQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrS---------------------RCl~iR 182 (351)
T KOG2035|consen 125 QRPFKVVVINEADELTRD-AQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRS---------------------RCLFIR 182 (351)
T ss_pred ccceEEEEEechHhhhHH-HHHHHHHHHHHHhcCceEEEEecCcccchhHHhh---------------------heeEEe
Confidence 346899999999987533 3456666666777788888776655543333222 223455
Q ss_pred ecCcchhhHHHHHHHhhhcC
Q psy3143 315 FSNIDEVRLYNVLGLMLLRE 334 (337)
Q Consensus 315 ~~~~~~~~~~~~L~~ll~~~ 334 (337)
|..-.+.+-..+|..++.++
T Consensus 183 vpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 183 VPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 55555566666666666544
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.18 Score=46.12 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
++++++||+|+|||.....
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4799999999999987643
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.12 Score=46.24 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.4
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
+++++|.|+||||||......+.+.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 36899999999999988764443333
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.21 Score=45.81 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
+..|...|+. ++.+...+..+. .+++++++|+||||||... -.++..+ + ...+++++--+.||
T Consensus 154 l~~l~~~g~~--~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i---~---~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGTF--PPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV---A---PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC---C---CCCcEEEECCccee
Confidence 4555556653 456666666554 4569999999999999754 2233333 1 23467777777776
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.53 Score=40.07 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=26.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
|.-+++.|++|+|||...+..+.+... .+.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~------~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG------QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEE
Confidence 456789999999999887666655541 255788874
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.81 Score=45.19 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=27.6
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+++-.++|+|||-.-+|..-...+...+..+.+++.+++.+-
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaH 522 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEec
Confidence 455588999999988877766666666655444544444333
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=93.53 E-value=1 Score=42.71 Aligned_cols=40 Identities=23% Similarity=0.108 Sum_probs=26.1
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
+..|.-+++.|+||+|||...+-.+.+.... .+..++++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~-----~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR-----EGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEE
Confidence 3345567899999999998765555444321 244577775
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.074 Score=53.06 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=37.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+++++.||||||||..+++|.+-.. +..+||+=|--|+........+.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~--------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF--------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC--------CCCEEEEeCCchHHHHHHHHHHh
Confidence 4899999999999999999976543 33588888888887766555544
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.96 Score=44.22 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|+-+.+.||+|||||+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLL 378 (529)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.3 Score=44.23 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=37.2
Q ss_pred CChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 113 YPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 113 ~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+++.|..-+.. +..++++++||+||||||.. +.+++..+ ....|++.+=-|.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I------p~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC------CchhcEEEEeccccc
Confidence 445666555554 45677999999999999975 34455444 134567777777665
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.25 Score=45.40 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=26.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+..++++||||||||+.. ..++..+.. ..+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~----~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK----NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc----CCCCEEEEEcCChhh
Confidence 3567899999999999875 334444421 123456666554444
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.28 Score=44.43 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=34.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH-HHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL-GVQVYQVTRQ 184 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L-a~q~~~~~~~ 184 (337)
.-+.++|++|+|||...+..++...+.....+.+.+++|+.--..+ ..++.+.+..
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4567999999999987766665544322222335689999744332 3444444433
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.44 Score=45.54 Aligned_cols=52 Identities=19% Similarity=0.113 Sum_probs=34.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|.-+++.|++|+|||...+..+.+... .+.+++|+..- +-..|+...+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAK------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 3457889999999999887665544431 23568888754 4445665544443
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.24 Score=49.88 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++... ...++|.|..|||||.+..-=+.+.+.. ......+++.++=|+-.|..+...+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~--~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA--GGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc--CCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4688899998764 6789999999999999876655555532 122345699999999999999988888775
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.3 Score=45.50 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=21.3
Q ss_pred ECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 218 ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 218 ~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
+.||++...+...+. .-.++++||+|.+...
T Consensus 401 ~~~G~~~~~l~~~~~----~~~villDEidk~~~~ 431 (784)
T PRK10787 401 SMPGKLIQKMAKVGV----KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCCcHHHHHHHhcCC----CCCEEEEEChhhcccc
Confidence 368888877765321 1247999999998754
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.8 Score=41.60 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=69.4
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEE-eC-CccH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VG-GLEV 202 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~-~~-~~~~ 202 (337)
+..|.=+++.|.||.|||...+-.+.+.... .+..++|.+. -.-..|+..++..... ++....+ .| ....
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~-----~g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l~~ 289 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA-----SEKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNLDQ 289 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCCCH
Confidence 3344567789999999998654333333321 1334666643 2334555444433222 2221111 22 1222
Q ss_pred HHH------HHHHhcCCCEEEE-----CcHHHHHHHhcCCCCCCCCccEEEEeccccccccc----HHHHHHHHHHHc--
Q psy3143 203 KVQ------ESVLRKCPDIVIA-----TPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH----FASQMKEIIRLC-- 265 (337)
Q Consensus 203 ~~~------~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~----~~~~~~~i~~~~-- 265 (337)
..+ ...+...+.+.|. |+..+...+... ......+++||||=.+.|...+ ....+..|.+.+
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~-~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~ 368 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRV-YRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKA 368 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH-HHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 111 1222233446653 444444333221 0012357899999998775322 122333333222
Q ss_pred ---CCCCeEEEEeecCchhH
Q psy3143 266 ---SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 266 ---~~~~q~i~~SAT~~~~~ 282 (337)
..++.+|++|. ++..+
T Consensus 369 lAkel~ipVi~lsQ-LnR~~ 387 (472)
T PRK06904 369 LAKELKVPVVALSQ-LNRTL 387 (472)
T ss_pred HHHHhCCeEEEEEe-cCchh
Confidence 23677777774 44443
|
|
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.19 Score=53.60 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.+.+++|.|..|||||.+...-++..++... .-...++|||+.|+..+..+..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 5679999999999999998777777776432 223557999999999998887766653
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.6 Score=44.84 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=57.1
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCC
Q psy3143 160 DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSL 235 (337)
Q Consensus 160 ~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l 235 (337)
..++++||.|-|+--|.++...++... +.+..++|+.+.......++ ..+.|+|||. +.. +.+++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAa-RGLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAA-RGLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEcc------ccc-ccCCC
Confidence 457799999999999998877776543 78899999998777665554 4579999993 333 37889
Q ss_pred CCccEEEE
Q psy3143 236 SDIEVLVL 243 (337)
Q Consensus 236 ~~~~~iVi 243 (337)
..+++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 99999984
|
|
| >PRK07413 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.2 Score=46.24 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=78.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH----HHHHHHHHHHHHhhcc--CcEEEEEeCCccHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE----LGVQVYQVTRQLAQFT--SVEVALSVGGLEVK 203 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~----La~q~~~~~~~l~~~~--~~~v~~~~~~~~~~ 203 (337)
-+.|....|-|||.+++=-++..+=.........||+|+.=-+. -.+. ..+..+.... ++.+..+-.+....
T Consensus 21 li~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQFlKg~~~~~GE~--~~l~~l~~~~~~~i~~~~~g~~~~~~ 98 (382)
T PRK07413 21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDED--AAIEALQRGFPHLIDQVRTGRAEFFG 98 (382)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEEEcCCCCCCcHH--HHHHhccccCCCceEEEECCCCCeee
Confidence 46677889999999988777777621100111238888863332 1111 1222222100 23322211110000
Q ss_pred H---HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecC
Q psy3143 204 V---QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 204 ~---~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
. ..... ......+..... .+.-..+++||+||+-..++.++. ..+..+++..|...-+|+..-..
T Consensus 99 ~~~~~~~~~--------~~a~~~~~~a~~--~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~a 168 (382)
T PRK07413 99 ADEITKFDR--------QEAQRGWDIAKG--AIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAA 168 (382)
T ss_pred CCCCcHHHH--------HHHHHHHHHHHH--HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 0 00000 001223333322 233457899999999988777743 45667777788888888888888
Q ss_pred chhHHHHHH
Q psy3143 279 TDAVNDLVS 287 (337)
Q Consensus 279 ~~~~~~~~~ 287 (337)
|+.+.+++.
T Consensus 169 p~~Lie~AD 177 (382)
T PRK07413 169 PQSLLDIAD 177 (382)
T ss_pred CHHHHHhCC
Confidence 888888764
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.22 Score=49.04 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+++++++|+||||||+.. ..++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999754 4455555
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.23 Score=42.33 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=30.6
Q ss_pred CcHHHHHHHhcCCCCCCCCccEEEEecccccc-c----ccHHHHHHHHHHHc-CCCCeEEEEeecC
Q psy3143 219 TPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-D----EHFASQMKEIIRLC-SRTRQTMLFSATM 278 (337)
Q Consensus 219 Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~-~----~~~~~~~~~i~~~~-~~~~q~i~~SAT~ 278 (337)
+...++..+...+. . -+|||||+|.+. . ..+...+..++... ......++++++-
T Consensus 105 ~l~~~~~~l~~~~~----~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGK----K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHC----C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCC----c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 44455555554311 1 689999999988 2 34566666666653 2233445566654
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.92 Score=41.45 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++||||||.|.... .+.+...++.-+..+.+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEE-EeC
Confidence 4678999999999886443 2344444444344444444 444
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.1 Score=42.73 Aligned_cols=138 Identities=16% Similarity=0.056 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEE-eCCccHHHH-
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEVKVQ- 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~-~~~~~~~~~- 205 (337)
|.-++|.|+||+|||...+-.+.+.... .+..+++++. -.-..++...+..... ++....+ .|.......
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-----~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-----EGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-----CCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHH
Confidence 4467899999999997766555554421 1345666653 2233444444333222 2221111 122221111
Q ss_pred -----HHHHhcCCCEEE-E----CcHHHHHHHhcCCCCCCCCccEEEEecccccccc----cHHHHHHHHHHHc-----C
Q psy3143 206 -----ESVLRKCPDIVI-A----TPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE----HFASQMKEIIRLC-----S 266 (337)
Q Consensus 206 -----~~~~~~~~~Ilv-~----Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~----~~~~~~~~i~~~~-----~ 266 (337)
...+... .+.| . |+..+...+... ..-..+++||||=.+.|... +....+..+.+.+ .
T Consensus 267 ~~~~a~~~l~~~-~l~i~d~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 267 KLTSAAGKLSEA-PLYIDDTPGLTITELRAKARRL--KREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHH--HHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1222232 3444 2 334444433221 11124789999999877422 1222333333322 2
Q ss_pred CCCeEEEEee
Q psy3143 267 RTRQTMLFSA 276 (337)
Q Consensus 267 ~~~q~i~~SA 276 (337)
.++.++++|.
T Consensus 344 ~~i~vi~lsq 353 (434)
T TIGR00665 344 LNVPVIALSQ 353 (434)
T ss_pred hCCeEEEEec
Confidence 4667777765
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.36 Score=40.16 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=35.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC----CCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPR----DDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|.-+++.|++|+|||...+-.+.+.+...+. ...+.+++++..-.. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 45568899999999998876666665532211 114567888876544 5566777776653
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.81 Score=41.46 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
....+++|||+||.|.... .+.+...++..+..+ ++++.++-+.
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t-~~il~~~~~~ 134 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGV-FIILLCENLE 134 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCe-EEEEEeCChH
Confidence 4678999999999886444 233334444333344 4444444343
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.21 Score=41.57 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHh-CCCCEEEEcCCCCchhHHh
Q psy3143 115 TPIQAATIPVAL-LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 115 ~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~ 145 (337)
++-|...+.... .|..++++|+||||||...
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 555666666544 5678999999999999864
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.1 Score=46.54 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|+|||...-.
T Consensus 201 n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred ceEEECCCCCCHHHHHHH
Confidence 899999999999987643
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.2 Score=36.34 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|+|||+....
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987654
|
|
| >KOG1807|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.22 Score=49.29 Aligned_cols=70 Identities=19% Similarity=-0.007 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
...-|..|+...+.++-.++.||+|+|||++-+..+-..+.++......-.++++|-|...+.|....+-
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 3456999999999999999999999999999877555444433333334568999988887777654443
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.12 Score=45.59 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCEEEEcCCCCchhHHhHH
Q psy3143 119 AATIPVALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 119 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+++..+..|+++++.||+|+|||..+..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 34455667889999999999999987643
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=92.69 E-value=1 Score=36.80 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=29.7
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
++|.|++|||||..+...+.. .+.+++|+.-.+.+-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 579999999999765544322 245788887776665554444443
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.76 Score=43.80 Aligned_cols=70 Identities=16% Similarity=0.328 Sum_probs=54.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
.+.+||.+.+..-|..+++.|.+++ +.++.++|+.+.......+. +..+|+|||. +.. +.++..+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g----~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAg-RGIDIpn 585 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG----YKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAG-RGIDIPN 585 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc----ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccc-cCCCCCc
Confidence 5679999999998888777777655 89999999998776654443 3579999993 222 3778899
Q ss_pred ccEEE
Q psy3143 238 IEVLV 242 (337)
Q Consensus 238 ~~~iV 242 (337)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 98877
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.89 Score=43.62 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=26.2
Q ss_pred ccEEEEecccccccc------cHH-HHHHHHHHHc---CCCCeEEEEeecCchh
Q psy3143 238 IEVLVLDEADRMLDE------HFA-SQMKEIIRLC---SRTRQTMLFSATMTDA 281 (337)
Q Consensus 238 ~~~iViDEad~l~~~------~~~-~~~~~i~~~~---~~~~q~i~~SAT~~~~ 281 (337)
-.+|.|||.|.+... .|. ..+..++..+ ..+--+|++.||--++
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 457889999987642 122 2233343333 4455689999995444
|
|
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.084 Score=49.28 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=36.4
Q ss_pred CCCccEEEEecccccccc--------cHHHHHHHHHHH----cCCCCeEEEEeec-CchhHHHHHHhhCCCCeE
Q psy3143 235 LSDIEVLVLDEADRMLDE--------HFASQMKEIIRL----CSRTRQTMLFSAT-MTDAVNDLVSVSLTRPVR 295 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~--------~~~~~~~~i~~~----~~~~~q~i~~SAT-~~~~~~~~~~~~~~~p~~ 295 (337)
..+..+++|||+|.++.. +-......++.. ...+-++++++|| +|.++.+.+...+....+
T Consensus 243 ~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~y 316 (428)
T KOG0740|consen 243 SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLY 316 (428)
T ss_pred hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceee
Confidence 344678889999988742 222333334333 2345588899999 556677666654443433
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=92.57 E-value=4.8 Score=40.48 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++|+..+..+...+... ++.+..++++....... ....+..+|+|||- .+.+ .+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~r--GfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLRE--GLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhcC--CeeeC
Confidence 4678999999999999888877764 47788888876544332 22335678999992 3333 78899
Q ss_pred CccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 237 DIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 237 ~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
.++++|+=+++...-. +....++.+-+.. .....++++--..+..+..
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQK 559 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHH
Confidence 9999998888864221 2222333332211 2345666666666655443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.28 Score=44.92 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=28.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.-+.++|++|+|||...+..++...+.....+.+++++|+.--.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 35679999999999877655544433222222345788887543
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=2.5 Score=41.02 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=18.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.-++|.|.||+|||...+-.+.+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHH
Confidence 4578899999999987655444443
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.96 Score=44.03 Aligned_cols=51 Identities=27% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|.-+++.|++|+|||...+..+.+.+. .+.+++|++-. +-..++.+.+..+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~------~g~~~~yis~e-~~~~~i~~~~~~~ 323 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR------RGERCLLFAFE-ESRAQLIRNARSW 323 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEec-CCHHHHHHHHHHc
Confidence 456789999999999887666666542 25568888644 3455666655544
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.1 Score=46.57 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.|+++.||||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 489999999999998653
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=92.36 E-value=3.4 Score=36.90 Aligned_cols=63 Identities=10% Similarity=0.197 Sum_probs=35.5
Q ss_pred ccEEEEeccccccccc---HHHHHH----HHHHHc----CCCCeEEEEeecCchh-HHHHHHhhCCCCeEEEeCC
Q psy3143 238 IEVLVLDEADRMLDEH---FASQMK----EIIRLC----SRTRQTMLFSATMTDA-VNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 238 ~~~iViDEad~l~~~~---~~~~~~----~i~~~~----~~~~q~i~~SAT~~~~-~~~~~~~~~~~p~~i~~~~ 300 (337)
-++|.|||+|.+.... -....+ .++-++ +.+--++++.||-.+. +...+++-+....+|-.++
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe 300 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPE 300 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCc
Confidence 4689999999775421 111222 223232 2345688899997666 4455665555555555443
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=92.33 E-value=2 Score=42.20 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=35.3
Q ss_pred cCCccccCCCCHHHHHHHHh---CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 89 ENSSFHQMNLSRPLLKAIGA---LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
..-+|+++|=-..+.+.|+. .....|-.+..-.+ .--+.|++.||+|+|||+.+
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 34579999866666666542 23444444443332 23468999999999999875
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=92.32 E-value=2 Score=34.03 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=27.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
..+-+++++||.-.-++......+..+++.+. . .++++.
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~t 124 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVS 124 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEE
Confidence 44567999999998888777777777776662 3 454544
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.2 Score=44.07 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=55.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.|+|+..|.++++.+... ++.+..++|+.........+ ....+|||||. .+.. .+++..
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCccC
Confidence 567999999999999988877654 47889999987765544333 35679999993 3433 788999
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
++++|.-..
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 999987544
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.26 Score=44.60 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=26.7
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
+..+.+++++|+||||||+..-. ++..+ + ...+++++-.+.++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~a-l~~~~---~---~~~~iv~ied~~El 183 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKS-LVDEI---P---KDERIITIEDTREI 183 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHH-HHccC---C---ccccEEEEcCcccc
Confidence 34677999999999999986422 33222 1 23346666555444
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.16 Score=50.55 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.++++.||||||||..+++|.+-.. +..+||+=|-.|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~--------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW--------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC--------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987542 456899999999876554443
|
|
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.2 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=20.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
.+++|.|.||||||.+....++..++
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999986555555544
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.8 Score=47.42 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998753
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.7 Score=43.47 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=54.5
Q ss_pred CeeEEEEcCCHH--------HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhc
Q psy3143 162 NTRVLVLVPTRE--------LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHN 229 (337)
Q Consensus 162 ~~~~lil~Pt~~--------La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~ 229 (337)
+.+++|++|+.+ -+..++..+... +.+..+..++|+......... ..+..+|+|||. .+..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 557999999863 233444444432 246789999999876554433 235689999994 3333
Q ss_pred CCCCCCCCccEEEEeccccc
Q psy3143 230 TPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 230 ~~~~~l~~~~~iViDEad~l 249 (337)
.+++.++++||+..+++.
T Consensus 521 --GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 521 --GVDVPNATVMVIEDAERF 538 (630)
T ss_pred --CcccCCCcEEEEeCCCcC
Confidence 788999999999888864
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.98 Score=42.13 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=37.9
Q ss_pred CccEEEEecccccccccHHHHHHHHHHH----c----CCCCeEEEEeecCchhHHHHHH--hhC--CCCeEEEeCCCcc
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRL----C----SRTRQTMLFSATMTDAVNDLVS--VSL--TRPVRVFVDNNHE 303 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~----~----~~~~q~i~~SAT~~~~~~~~~~--~~~--~~p~~i~~~~~~~ 303 (337)
+=..+.+||+|.|...+-...++.+-.. + +....+-+.+||--+--..+.. .++ .+|..|.+++...
T Consensus 173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRE 251 (403)
T ss_pred CCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhh
Confidence 3357999999998766644444333221 1 2234455667775544444444 333 4688888776443
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.6 Score=36.86 Aligned_cols=44 Identities=25% Similarity=0.132 Sum_probs=30.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc---CCHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV---PTRELGVQV 178 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~---Pt~~La~q~ 178 (337)
.=+++.|+.|+|||...+..++-.+. .+.++.+++ |+|+...|+
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~------~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLM------NGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHh------CCceEEEEEechhHHHHHHHH
Confidence 45789999999999887776666663 355677765 455555554
|
|
| >PRK13876 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.15 Score=50.81 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.++++.||||||||..+++|.+-.. +..+||+=|--|+........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~--------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW--------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC--------CCCEEEEeCcchHHHHHHHHHHh
Confidence 5899999999999999999976653 34588888888887766555444
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=92.02 E-value=1 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.044 Sum_probs=17.1
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++.||+|+|||...-..+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 389999999999998764433
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.11 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHh
Q psy3143 125 ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+.+++.++++||+|+|||...
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHH
Confidence 457789999999999999754
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.98 E-value=4 Score=36.45 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
-+..+++|||+||.|.... .+.+.+++..-+.+.-+|+.|..
T Consensus 93 e~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CCCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCC
Confidence 4678999999999986444 34555555554445555554443
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.9 Score=42.38 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=20.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
-.|+.+++.||+|+|||..... +...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 3678899999999999975433 44443
|
Members of this family differ in the specificity of RNA binding. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.67 Score=47.91 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||||+|||..+-
T Consensus 541 ~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 541 SFLFSGPTGVGKTELTK 557 (821)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 36899999999997653
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.15 Score=34.08 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|..+++.|++|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
|
|
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.24 Score=49.30 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.++++.||||+|||..+++|.+-.. ++-++|+=|..|+........+++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~--------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW--------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC--------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5889999999999999999975321 345888889999877666655443
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.6 Score=42.16 Aligned_cols=113 Identities=19% Similarity=0.089 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH--
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ-- 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~-- 205 (337)
|.-++|.|.||.|||...+-.+.+.... .+..++|.+. -.-..|+...+..........- +..|.......
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~-----~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK-----SKKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh-----cCCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHH
Confidence 3457789999999998765544444321 1334666643 2223455444443322111110 11122221111
Q ss_pred ----HHHHhcCCCEEEE-----CcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 206 ----ESVLRKCPDIVIA-----TPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 206 ----~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
...+.. ..+.|. |+..+...+... ..-..+++||||=.+.|-
T Consensus 302 ~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l--~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRL--KREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHH--HHhcCCCEEEEecHHhcC
Confidence 112222 245444 344444433221 112357899999998774
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.29 Score=43.05 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|+.++|.|++|||||.-.+..+...+. .+-++++++ +.+...++.+.+..++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~------~ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR------EGEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 5678999999999999877666666552 244566665 4455566666666543
|
|
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.41 Score=47.70 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH--HHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE--LGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~--La~q~~~~~~~l~ 186 (337)
..++++|.|+||+|||..+...+.+.+. .+..++++=|-.. |...+...++..+
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~------~g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIR------RGDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 3468999999999999887665555552 1345777777754 6666666666554
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=91.62 E-value=3.2 Score=34.83 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=32.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHc-CC--CCeEEEEeecCchhH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLC-SR--TRQTMLFSATMTDAV 282 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~--~~q~i~~SAT~~~~~ 282 (337)
.+-+++|+||...-++......+..++... .. ..+++++|.--...+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 567899999999988877666666655443 32 456777776444333
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2543|consensus | Back alignment and domain information |
|---|
Probab=91.60 E-value=4.5 Score=37.33 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=44.9
Q ss_pred CccEEEEeccccccccc--HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 237 DIEVLVLDEADRMLDEH--FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
.--++|+|-||.+-+.+ ....+.++...++.+.-.|++|+++++...- .+.....|+.++.+.
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~-~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL-INTGTLEIVVLHFPQ 179 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh-cccCCCCceEEecCC
Confidence 45689999999887665 4566666777788787788999998865332 223455677777754
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=91.52 E-value=2.6 Score=34.58 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=28.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||.-.-++......+..++..+... .+++++.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 4566899999999888877777777776665444 3444443
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.8 Score=34.62 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCC------------------eeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN------------------TRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~------------------~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|.-+.+.|++|+|||+ ++..+........+ ..+.++..
T Consensus 24 ~g~~~~i~G~nGsGKSt-----ll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------------ 80 (157)
T cd00267 24 AGEIVALVGPNGSGKST-----LLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------------ 80 (157)
T ss_pred CCCEEEEECCCCCCHHH-----HHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------------
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
-+.|...+.... ......-+++++||...-++......+..++..+...
T Consensus 81 -----------------------------lS~G~~~r~~l~--~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 81 -----------------------------LSGGQRQRVALA--RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred -----------------------------CCHHHHHHHHHH--HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Q ss_pred CeEEEEeecCchhHHHH
Q psy3143 269 RQTMLFSATMTDAVNDL 285 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~ 285 (337)
.++++++.--...+...
T Consensus 130 ~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 130 GRTVIIVTHDPELAELA 146 (157)
T ss_pred CCEEEEEeCCHHHHHHh
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 337 | ||||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 6e-38 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 3e-33 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 2e-32 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 2e-27 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-27 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 2e-27 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 9e-27 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 1e-26 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 2e-26 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 3e-26 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 9e-26 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 8e-25 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 8e-24 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 1e-23 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 8e-23 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 3e-22 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 3e-22 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 3e-22 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 4e-22 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-22 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 4e-22 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-22 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 4e-22 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 4e-22 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 4e-21 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 6e-21 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 2e-20 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 9e-20 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 1e-19 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 1e-19 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 3e-19 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 5e-19 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 3e-17 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 6e-17 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 8e-16 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 1e-15 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 2e-15 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 3e-15 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 3e-15 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 5e-15 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 7e-15 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 1e-14 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 2e-14 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 2e-14 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 2e-14 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 2e-14 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 5e-13 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 6e-13 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 5e-11 |
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-117
Identities = 88/237 (37%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 66 VEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVA 125
++ E + + V E + F LS+ LK + Y T IQ TI +A
Sbjct: 2 MQVERESISR--LMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLA 59
Query: 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQ 184
L G+D+ G A TG+GKT AF++P+LE L + VL++ PTREL Q ++V R+
Sbjct: 60 LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK 119
Query: 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244
+ + L +GG ++K + + +I++ TPGRLL H+ T SF +D+++LVLD
Sbjct: 120 VGKNHDFSAGLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLD 178
Query: 245 EADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN 301
EADR+LD FA M +I + RQT+LFSAT T +V DL +SL P V+V
Sbjct: 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 330 bits (847), Expect = e-114
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 7/264 (2%)
Query: 37 MKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDAPPVEENSSFHQM 96
M H + + +G + + K E+ E E++SF +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVP---SLPLGLTGAFEDTSFASL 57
Query: 97 N--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLL 154
++ LKAI + + T IQ +I L GRD+ A TG+GKT AF++P +E ++
Sbjct: 58 CNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIV 117
Query: 155 -YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
+ T VL+L PTREL +Q + V ++L L +GG + L
Sbjct: 118 KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI 177
Query: 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
+I++ATPGRLLDH+ NTP F +++ LV+DEADR+LD F ++K+II+L RQTML
Sbjct: 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTML 237
Query: 274 FSATMTDAVNDLVSVSLTR-PVRV 296
FSAT T V DL +SL + P+ V
Sbjct: 238 FSATQTRKVEDLARISLKKEPLYV 261
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-114
Identities = 97/237 (40%), Positives = 137/237 (57%), Gaps = 3/237 (1%)
Query: 64 KQVEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIP 123
+ + + EE++ E + EE +F + ++ L +A L + PT IQ IP
Sbjct: 16 ENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIP 75
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
+AL GRDI G A TG+GKT AF LPIL LL P+ LVL PTREL Q+ +
Sbjct: 76 LALQGRDIIGLAETGSGKTGAFALPILNALLETPQ---RLFALVLTPTRELAFQISEQFE 132
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243
L V+ A+ VGG++ Q L K P I+IATPGRL+DHL NT F+L ++ LV+
Sbjct: 133 ALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192
Query: 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300
DEADR+L+ F +++ +I+++ R R+T LFSATMT V L +L PV+ V +
Sbjct: 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 7e-83
Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 19/308 (6%)
Query: 25 DAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDA 84
D D +++N + + + ++E + + +++
Sbjct: 6 DGNRDQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNS 65
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKT 142
V +S + L + + KAI + + TP+Q TI L D+ A TGTGKT
Sbjct: 66 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKT 125
Query: 143 AAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFT----SVEVALSV 197
AF++PI + L+ D Q + +++ PTR+L +Q+ +++ V
Sbjct: 126 FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLV 185
Query: 198 GGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
GG + + + + K P+IVIATPGRL+D L + ++ VLDEADR+L+ F
Sbjct: 186 GGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRD 245
Query: 257 QMKEIIRLCSRTR-------QTMLFSATMTDAVNDLVSVSLTRPVRVFVD----NNHEVA 305
++ I + + +T+LFSAT+ D V L + + + +F+D N E
Sbjct: 246 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 305
Query: 306 LNLRQEFV 313
+ Q V
Sbjct: 306 ERIDQSVV 313
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 252 bits (644), Expect = 2e-79
Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 19/251 (7%)
Query: 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGT 139
+++ V +S + L + + KAI + + TP+Q TI L D+ A TGT
Sbjct: 12 DNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGT 71
Query: 140 GKTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFT----SVEVA 194
GKT AF++PI + L+ D Q + +++ PTR+L +Q+ +++
Sbjct: 72 GKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACV 131
Query: 195 LSVGGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
VGG + + + + K P+IVIATPGRL+D L + ++ VLDEADR+L+
Sbjct: 132 SLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 191
Query: 254 FASQMKEIIRL-------CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD----NNH 302
F ++ I + + +T+LFSAT+ D V L + + + +F+D N
Sbjct: 192 FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251
Query: 303 EVALNLRQEFV 313
E + Q V
Sbjct: 252 EAHERIDQSVV 262
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 4e-78
Identities = 84/207 (40%), Positives = 111/207 (53%), Gaps = 3/207 (1%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILE 151
F L +L+A+ PTPIQAA +P+AL G+D+ G A TGTGKT AF LPI E
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
RL + R LVL PTREL +QV +A ++V GG Q+ L +
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLR 119
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
D V+ATPGR LD+L LS +EV VLDEAD ML F +++ ++ +RQT
Sbjct: 120 GADAVVATPGRALDYL-RQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178
Query: 272 MLFSATMTDAVNDLVSVSLTRPVRVFV 298
+LFSAT+ L + PV + V
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINV 205
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 2e-76
Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 9/266 (3%)
Query: 67 EAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL 126
+E + K FE + V+ +F M L LL+ I A + P+ IQ I +
Sbjct: 13 RKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII 72
Query: 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186
GRD+ + +GTGKTA F + +L+ L + R+ Q L+L PTREL VQ+ + L
Sbjct: 73 KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ---ALILAPTRELAVQIQKGLLALG 129
Query: 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246
+ +V+ +GG V L +V TPGR+ D + S I++LVLDEA
Sbjct: 130 DYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI-RRRSLRTRAIKMLVLDEA 188
Query: 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL 306
D ML++ F Q+ ++ R Q +L SAT+ + ++ + +T P+R+ V +
Sbjct: 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE 248
Query: 307 NLRQEFVSFSNIDE-----VRLYNVL 327
++Q FV+ + LY+ L
Sbjct: 249 GIKQFFVAVEREEWKFDTLCDLYDTL 274
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 4e-76
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFML 147
+ ++F L R LL I + P+PIQ IPVA+ GRDI A GTGKTAAF++
Sbjct: 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVI 77
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
P LE++ K Q L++VPTREL +Q QV R L + + ++ GG ++
Sbjct: 78 PTLEKVKPKLNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 134
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L + I++ TPGR+LD LSD + ++DEAD+ML F + +++I+
Sbjct: 135 RLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 193
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL-NLRQEFV 313
T Q++LFSAT V + + L +P + + E+ L + Q +
Sbjct: 194 THQSLLFSATFPLTVKEFMVKHLHKPYEINLME--ELTLKGITQYYA 238
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 2e-75
Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 16/228 (7%)
Query: 82 EDAP-PVEENSSFHQM----NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAA 136
D P P+ +F Q+ ++ LL+ I + PTPIQ IPV L GR++ A
Sbjct: 18 TDLPDPIA---TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAP 74
Query: 137 TGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS 196
TG+GKT AF +PIL +L R L++ PTREL Q+++ ++++ T + +
Sbjct: 75 TGSGKTLAFSIPILMQLKQPANK--GFRALIISPTRELASQIHRELIKISEGTGFRIHMI 132
Query: 197 VGGLEVKVQESV-LRKCPDIVIATPGRLLDHLH-NTPSFSLSDIEVLVLDEADRMLDEH- 253
+ K DI++ TP RL+ L + P L+ +E LV+DE+D++ ++
Sbjct: 133 HKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192
Query: 254 --FASQMKEIIRLCSRT-RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
F Q+ I C+ + +FSAT V ++L + V +
Sbjct: 193 TGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSI 240
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 228 bits (585), Expect = 7e-75
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+ F + +++AI L + PT IQ IP AL G + G + TGTGKT A++LP
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP 61
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV----GGLEVKV 204
I+E++ + + Q ++ PTREL Q+Y T ++ +F + + GG + +
Sbjct: 62 IMEKIKPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK 118
Query: 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
L P IVI TPGR+ D + + + +LV+DEAD MLD F + + +I
Sbjct: 119 ALEKLNVQPHIVIGTPGRINDFI-REQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 177
Query: 265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302
+ Q ++FSAT+ + + + + P V V +H
Sbjct: 178 MPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEHH 215
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 4e-74
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
D +F ++ L + I +Y PTPIQ IP L RDI CA TG+GK
Sbjct: 14 PDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGK 73
Query: 142 TAAFMLPILERLLYKPRDDQNT------RVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
TAAF++PI+ L+ + + Q + L+L PTREL +Q+ +++ + T + +
Sbjct: 74 TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV 133
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
GG + Q ++ +++ATPGRL+D + SL + +VLDEADRMLD F
Sbjct: 134 VYGGADTHSQIREVQMGCHLLVATPGRLVDFI-EKNKISLEFCKYIVLDEADRMLDMGFE 192
Query: 256 SQMKEIIRLC----SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
Q+++II RQT++FSAT + L + L + + V
Sbjct: 193 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 9e-74
Identities = 75/209 (35%), Positives = 120/209 (57%), Gaps = 5/209 (2%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+ + F L R LL I + + P+PIQ +IP+AL GRDI A GTGK+ A+++P
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
+LERL K + Q +V+VPTREL +QV Q+ Q+++ +V + GG ++
Sbjct: 61 LLERLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L +VIATPGR+LD + + ++++VLDEAD++L + F M++II +
Sbjct: 118 RLDDTVHVVIATPGRILDLI-KKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
RQ +L+SAT +V ++ L +P +
Sbjct: 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 1e-73
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 10/250 (4%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKT 142
+ F M L LL+ + + P+ IQ I + G D+ A +GTGKT
Sbjct: 13 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKT 72
Query: 143 AAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F + L+R+ + Q L+L PTREL +Q+ +V LA ++V +GG
Sbjct: 73 GTFSIAALQRIDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSF 129
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
LR IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I
Sbjct: 130 VEDAEGLRD-AQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-- 320
L T Q +L SATM + V ++ + + PVR+ V + ++Q +V+ +
Sbjct: 188 TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247
Query: 321 ---VRLYNVL 327
LY+ +
Sbjct: 248 ECLTDLYDSI 257
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 5e-73
Identities = 81/267 (30%), Positives = 125/267 (46%), Gaps = 10/267 (3%)
Query: 67 EAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL 126
+ + + E ++ E SF MNLS LL+ I A + P+ IQ I +
Sbjct: 16 RSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI 75
Query: 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186
G D+ A +GTGKTA F + IL+++ + Q LVL PTREL Q+ +V L
Sbjct: 76 KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ---ALVLAPTRELAQQIQKVVMALG 132
Query: 187 QFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245
+ +GG V+ + L+ + P I++ TPGR+ D L N S I++ VLDE
Sbjct: 133 DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDE 191
Query: 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
AD ML F Q+ +I + + Q +L SATM V ++ + P+R+ V
Sbjct: 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 251
Query: 306 LNLRQEFVSFSNIDE-----VRLYNVL 327
+RQ +++ + LY L
Sbjct: 252 EGIRQFYINVEREEWKLDTLCDLYETL 278
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 7e-73
Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 7/235 (2%)
Query: 68 AEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALL 127
+ ++ + E + F + LSRP+L+ + A + P+P+Q IP+
Sbjct: 1 SMRTAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC 60
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
G D+ A +GTGKT F L+ L+ + Q +L+L PTRE+ VQ++ V +
Sbjct: 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ---ILILAPTREIAVQIHSVITAIGI 117
Query: 188 FTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246
+E + +GG + ++ L+K I + +PGR+ + + I + +LDEA
Sbjct: 118 KMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPGRIKQLI-ELDYLNPGSIRLFILDEA 175
Query: 247 DRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300
D++L+E F Q+ I ++Q + SAT + + + ++ + P V +++
Sbjct: 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-72
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 69 EEYEENEGGKEFFEDAPPVEEN-----SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIP 123
+ + G + + +E N +F MNL LL+ I A + P+ IQ I
Sbjct: 3 HHHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 62
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
+ G D+ A +GTGKTA F + IL++L + ++ Q LVL PTREL Q+ +V
Sbjct: 63 PCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVIL 119
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242
L + +GG V+ + L+ + P IV+ TPGR+ D L N S I++ V
Sbjct: 120 ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKWIKMFV 178
Query: 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
LDEAD ML F Q+ EI + + + Q +L SATM V ++ + P+R+ V
Sbjct: 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 3e-72
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 5/211 (2%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFML 147
+ F M L LL+ + + P+ IQ I + G D+ A +GTGKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
L+R+ + Q L+L PTREL +Q+ +V LA ++V +GG
Sbjct: 71 AALQRIDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 127
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
LR IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I L
Sbjct: 128 GLRD-AQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 185
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
T Q +L SATM + V ++ + + PVR+ V
Sbjct: 186 TTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 5e-72
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 11/201 (5%)
Query: 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP 157
++ + +AI + + T +Q+ TIP+ L G+++ A TG+GKTAA+ +PILE
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 158 RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVI 217
+ LV+ PTREL QV R + ++ +VA GG+ K Q + +R DIV+
Sbjct: 56 ----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVV 110
Query: 218 ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
ATPGRLLD + LS E++++DEAD M + F +K I+ S + T LFSAT
Sbjct: 111 ATPGRLLDLW-SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSAT 169
Query: 278 MTDAVNDLVSVSLTRPVRVFV 298
+ + + +V +T +
Sbjct: 170 IPEEIRKVVKDFITNYEEIEA 190
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 1e-71
Identities = 84/336 (25%), Positives = 150/336 (44%), Gaps = 17/336 (5%)
Query: 3 SSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGK 62
++D D+++ ++ +E+ PD + +++++ A +
Sbjct: 2 ATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSL 61
Query: 63 LKQVEAEEYEENEGGKEFFEDAP--PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
L ++ +N E + P P+ SF ++ L LL+ + A+ + P+ IQ
Sbjct: 62 LNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQEN 121
Query: 121 TIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178
+P+ L +++ + +GTGKTAAF+L +L ++ + Q L L PT EL +Q
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---CLCLSPTYELALQT 178
Query: 179 YQVTRQLAQFTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237
+V Q+ +F +++A +V G +++ + IVI TPG +LD
Sbjct: 179 GKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235
Query: 238 IEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
I+V VLDEAD M+ Q I R+ R Q +LFSAT D+V + P +
Sbjct: 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
Query: 297 FVDNNHEVALNLRQEFVSFSNIDE-----VRLYNVL 327
+ E ++Q +V S+ DE LY +
Sbjct: 296 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 2e-70
Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 8/228 (3%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
+S F L LL+AI + +P+ +Q IP A+LG D+ A +G GKTA F+L
Sbjct: 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQESV 208
L++L VLV+ TREL Q+ + + +++ V+VA+ GGL +K E V
Sbjct: 67 LQQLEPVTGQVS---VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 123
Query: 209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCS 266
L+K CP IV+ TPGR+L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 124 LKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL-NLRQEFV 313
+Q M+FSAT++ + + + P+ +FVD+ ++ L L+Q +V
Sbjct: 183 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV 230
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 4e-70
Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 7/240 (2%)
Query: 62 KLKQVEAEEYEENEGGKEFFEDAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
E E Y ++ + P PV +F++ N ++ I N+ PT IQA
Sbjct: 2 MRTAQEVETYRRSKEITVRGHNCPKPVL---NFYEANFPANVMDVIARQNFTEPTAIQAQ 58
Query: 121 TIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT--RVLVLVPTRELGVQV 178
PVAL G D+ G A TG+GKT +++LP + + ++P ++ LVL PTREL QV
Sbjct: 59 GWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQV 118
Query: 179 YQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238
QV + + ++ GG Q L + +I IATPGRL+D L +L
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRT 177
Query: 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
LVLDEADRMLD F Q+++I+ RQT+++SAT V L L + + +
Sbjct: 178 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 5e-70
Identities = 80/238 (33%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 66 VEAEEYEENEGGKEFFEDAP-PVEENSSFHQMNLSRP-LLKAIGALNYIYPTPIQAATIP 123
+ ++ + E P P F P LLK+I + + PTPIQ+ P
Sbjct: 1 MTCDDLKSGEK-----RLIPKPTC---RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWP 52
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT---RVLVLVPTRELGVQVYQ 180
+ L G D+ A TGTGKT ++++P L +P + +LVL PTREL + V
Sbjct: 53 IILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112
Query: 181 VTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240
+ + + ++ GG Q + K DI+IATPGRL D N S +L I
Sbjct: 113 ECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITY 170
Query: 241 LVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
LV+DEAD+MLD F Q+++I+ RQT++ SAT D V L L P+ V+V
Sbjct: 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-69
Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 15/256 (5%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATG 138
+ P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++ + +G
Sbjct: 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSG 74
Query: 139 TGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSV 197
TGKTAAF+L +L ++ + Q L L PT EL +Q +V Q+ +F +++A +V
Sbjct: 75 TGKTAAFVLAMLSQVEPANKYPQ---CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 198 GGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FAS 256
G +++ + IVI TPG +LD I+V VLDEAD M+
Sbjct: 132 RGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 188
Query: 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316
Q I R+ R Q +LFSAT D+V + P + + E ++Q +V S
Sbjct: 189 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 248
Query: 317 NIDE-----VRLYNVL 327
+ DE LY +
Sbjct: 249 SRDEKFQALCNLYGAI 264
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 2e-69
Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 7/213 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+S F L LL+AI + +P+ +Q IP A+LG D+ A +G GKTA F+L
Sbjct: 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 71
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQES 207
L++L VLV+ TREL Q+ + + +++ +V+VA+ GGL +K E
Sbjct: 72 TLQQLEPVTGQVS---VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 128
Query: 208 VLRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC 265
VL+K CP IV+ TPGR+L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 129 VLKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT 187
Query: 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+Q M+FSAT++ + + + P+ +FV
Sbjct: 188 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 1e-68
Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 12/302 (3%)
Query: 3 SSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGK 62
++D D+++ ++ +E+ PD + +++++ A +
Sbjct: 2 ATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSL 61
Query: 63 LKQVEAEEYEENEGGKEFFEDAP--PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
L ++ +N E + P P+ SF ++ L LL+ + A+ + P+ IQ
Sbjct: 62 LNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQEN 121
Query: 121 TIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178
+P+ L +++ + +GTGKTAAF+L +L ++ + Q L L PT EL +Q
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---CLCLSPTYELALQT 178
Query: 179 YQVTRQLAQFTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237
+V Q+ +F +++A +V G +++ + IVI TPG +LD
Sbjct: 179 GKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235
Query: 238 IEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
I+V VLDEAD M+ Q I R+ R Q +LFSAT D+V + P +
Sbjct: 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
Query: 297 FV 298
+
Sbjct: 296 KL 297
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 3e-67
Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFM 146
E +F+++NLS +L AI + PT IQ IP+ L +I A TG+GKTA+F
Sbjct: 3 VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFA 62
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
+P++E + ++ ++L PTREL +QV L ++++A GG + Q
Sbjct: 63 IPLIELV----NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 118
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L+ +IV+ TPGR+LDH+ N + +L +++ +LDEAD ML+ F +++I+ C+
Sbjct: 119 KALKN-ANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
+ ++ +LFSATM + +L + + ++ N+ Q +V
Sbjct: 177 KDKRILLFSATMPREILNLAKKYMGDYSFIKA----KINANIEQSYV 219
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 3e-67
Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%)
Query: 82 EDAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
D P P++ F +L ++ + Y PTPIQ +IPV GRD+ CA TG+G
Sbjct: 49 SDVPQPIQ---HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSG 105
Query: 141 KTAAFMLPILERLLYKPRDDQNTR--VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG 198
KTAAF+LPIL +LL P + + R V+++ PTREL +Q++ R+ A + +++ + G
Sbjct: 106 KTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG 165
Query: 199 GLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQM 258
G + Q + + +VIATPGRLLD + + + D +VLDEADRMLD F+ M
Sbjct: 166 GTSFRHQNECITRGCHVVIATPGRLLDFV-DRTFITFEDTRFVVLDEADRMLDMGFSEDM 224
Query: 259 KEIIRLCSRT--RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316
+ I+ + QT++FSAT + + + L V V + +++Q +
Sbjct: 225 RRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN 284
Query: 317 NID-EVRLYNVLG 328
+L +L
Sbjct: 285 KYAKRSKLIEILS 297
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 7e-67
Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 23/248 (9%)
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAA 144
P +E SF + + ++ I Y PTP+Q IP+ RD+ CA TG+GKTAA
Sbjct: 12 PHIE---SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68
Query: 145 FMLPILERLLYKPRDDQNTR---------------VLVLVPTRELGVQVYQVTRQLAQFT 189
F+LPIL ++ + LVL PTREL VQ+Y+ R+ + +
Sbjct: 69 FLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS 128
Query: 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249
V + GG ++ Q L + +++ATPGRL+D + L + LVLDEADRM
Sbjct: 129 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM-ERGKIGLDFCKYLVLDEADRM 187
Query: 250 LDEHFASQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
LD F Q++ I+ + R TM+FSAT + L L + + V +
Sbjct: 188 LDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS 247
Query: 306 LNLRQEFV 313
N+ Q+ V
Sbjct: 248 ENITQKVV 255
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 6e-66
Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 16/244 (6%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPI 149
SF ++ L+ LLK I A+ + P+ IQ +P+ L R++ + +GTGKTAAF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
L R+ + Q + L P+REL Q +V +++ +FT + L V K ++
Sbjct: 66 LTRVNPEDASPQ---AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQIN- 121
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRT 268
+++ TPG +LD + L I++ VLDEAD MLD+ Q + R +
Sbjct: 122 ---AQVIVGTPGTVLDLM-RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-----VRL 323
Q +LFSAT DAV + + + N ++Q ++ N + L
Sbjct: 178 TQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL 237
Query: 324 YNVL 327
Y ++
Sbjct: 238 YGLM 241
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-59
Identities = 28/204 (13%), Positives = 60/204 (29%), Gaps = 14/204 (6%)
Query: 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK 156
N T Q + G+ A TG GKT M+ L
Sbjct: 5 NEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--- 61
Query: 157 PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC---- 212
+ + ++ PT L Q + ++LA V++ ++ + +E +
Sbjct: 62 ---RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDD 117
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
I++ + + + S + + +D+ D +L ++
Sbjct: 118 YHILVFSTQFVSKNR---EKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 174
Query: 273 LFSATMTDAVNDLVSVSLTRPVRV 296
FS + + + V
Sbjct: 175 AFSTIKQGKIYERPKNLKPGILVV 198
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 1e-22
Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 8/179 (4%)
Query: 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169
+ I P Q + TG GKT M+ RL +VL+L
Sbjct: 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGG-----KVLMLA 59
Query: 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
PT+ L +Q + R+L ++ G + + + +++ATP + + L
Sbjct: 60 PTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-KVIVATPQTIENDLLA 118
Query: 230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288
SL D+ ++V DEA R + + + + ++ + +A+ ++ V
Sbjct: 119 G-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV 176
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 8e-17
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 125 ALLGRDICGCAATGTGKTA-AFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
AL G++I C TG+GKT A + + L K + + +V+VLV L Q+++
Sbjct: 45 ALEGKNIIICLPTGSGKTRVAVYI-AKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 103
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-----FSLSDI 238
Q V G ++K+ + K DI+I+T L + L N + LSD
Sbjct: 104 QPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDF 163
Query: 239 EVLVLDEADRMLDEHFASQMKEIIR 263
++++DE E I+R
Sbjct: 164 SLIIIDECHHTNKEA---VYNNIMR 185
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-13
Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 5/191 (2%)
Query: 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184
A G++ CA TG GKT +L L K Q +V+ + Q V +
Sbjct: 16 AKKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPCGQKGKVVFFANQIPVYEQQATVFSR 74
Query: 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244
+ +A G V + + DI+I TP L+++L+N SLS +++ D
Sbjct: 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFD 134
Query: 245 EADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303
E H + M + + L + V V + + + +
Sbjct: 135 ECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVGVGDAKTAEEAMQHICK 191
Query: 304 VALNLRQEFVS 314
+ L ++
Sbjct: 192 LCAALDASVIA 202
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 70.0 bits (170), Expect = 2e-13
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 6/170 (3%)
Query: 110 NYIYPT----PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165
+Y Q A+ G++ CA TG GKT +L L K Q +V
Sbjct: 6 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKV 64
Query: 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLD 225
+ + Q V + + V G V + + DI+I TP L++
Sbjct: 65 VFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 226 HLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLF 274
+L SLS +++ DE +H + M + L
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP 174
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 69.6 bits (169), Expect = 4e-13
Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 5/229 (2%)
Query: 25 DAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDA 84
D E + +L ++ + ++ + E + E E
Sbjct: 164 DKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPD 223
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAA 144
+ EN + +P Q A+ G++ CA TG+GKT
Sbjct: 224 DNLSENLGSAAEGIGKPPPVY----ETKKARSYQIELAQPAINGKNALICAPTGSGKTFV 279
Query: 145 FMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
+L + +V+ L + Q V + + V G V
Sbjct: 280 SILICEHHF-QNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338
Query: 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
+ + DI++ TP L++ + SLS +++ DE H
Sbjct: 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 67.7 bits (164), Expect = 1e-12
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 2/174 (1%)
Query: 107 GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVL 166
GA+ Q A+ G++ CA TG+GKT +L + +V+
Sbjct: 1 GAMETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHF-QNMPAGRKAKVV 59
Query: 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDH 226
L + Q V + + V G V + + DI++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 227 LHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT 279
+ SLS +++ DE H + M + + + +T
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLT 173
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 3e-12
Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 6/240 (2%)
Query: 25 DAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDA 84
D E + +L ++ + ++ + E + E E
Sbjct: 164 DKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPD 223
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAA 144
+ EN + +P Q A+ G++ CA TG+GKT
Sbjct: 224 DNLSENLGSAAEGIGKPPPVY----ETKKARSYQIELAQPAINGKNALICAPTGSGKTFV 279
Query: 145 FMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
+L + +V+ L + Q V + + V G V
Sbjct: 280 SILICEHHF-QNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338
Query: 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIR 263
+ + DI++ TP L++ + SLS +++ DE H + M +
Sbjct: 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 8e-10
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 116 PIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174
P QA + +L G++ T +GKT + ++ R+L Q + + +VP + L
Sbjct: 26 PPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL-----TQGGKAVYIVPLKAL 80
Query: 175 GVQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232
+ ++ + + VA++ G + K + DI+IAT + D L S
Sbjct: 81 ---AEEKFQEFQDWEKIGLRVAMATGDYDSKDEW---LGKYDIIIATAEK-FDSLLRHGS 133
Query: 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281
+ D+++LV DE + + ++ I+ Q + SAT+ +
Sbjct: 134 SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP 182
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 28/169 (16%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
A TG+GK+ + Q +VLVL P+ + +++ ++
Sbjct: 239 APTGSGKSTK-VPAAYAA--------QGYKVLVLNPSVAATLGFGA---YMSKAHGIDPN 286
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ G ++ P + +T G+ L S ++++ DE D
Sbjct: 287 IRTGV------RTITTGAP-VTYSTYGKFL--ADGGC--SGGAYDIIICDECHST-DSTT 334
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSL----TRPVRVFVD 299
+ ++ ++ AT T + V +
Sbjct: 335 ILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIP 383
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-09
Identities = 71/458 (15%), Positives = 133/458 (29%), Gaps = 150/458 (32%)
Query: 1 DDSSDEEGNKEDKEDNEGSEEDDVDAE--EDF---ALPDDEMKH-----DNIKNRQKLIG 50
+ + K+ E + D+ D + +D L +E+ H D + +L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 51 --KKKQKRLAK---EGKLKQ-----VEA--EEYEENEGGKEFFEDA--PPVEENSSFHQM 96
KQ+ + + E L+ + E + + + +N F +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 97 NLSR--PLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKT--AA-------- 144
N+SR P LK AL + P V + G G+GKT A
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKN------VLIDG-------VLGSGKTWVALDVCLSYKV 176
Query: 145 --------F------------MLPILERLLYK---------------------------- 156
F +L +L++LLY+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 157 -------PR-----DD-QNTRVL--------VLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
+ QN + +L+ TR QVT L+ T+ ++L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-----QVTDFLSAATTTHISL 291
Query: 196 --SVGGLEVKVQESVLRKCPDIVIAT-PGRLLDHLHNTPSFSLSDIEVLVLDEADRM--L 250
L +S+L K D P +L P LS I + D
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---P-RRLSIIAESIRDGLATWDNW 347
Query: 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV----SVSLTRPV--RVFVDNNHEV 304
++ II L A + L S + + ++ D
Sbjct: 348 KHVNCDKLTTIIESSLNV----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 305 ALNLRQEFVSFSNIDE------VRLYNVLGLMLLRENC 336
+ + + +S +++ + + ++ + L+
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKL 439
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175
P QA + G+++ T GKT + ++ + + + L +VP R L
Sbjct: 28 PPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPLRAL- 80
Query: 176 VQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF 233
+ ++ + + +S G + + ++ L C DI++ T + D L +
Sbjct: 81 --AGEKYESFKKWEKIGLRIGISTG--DYESRDEHLGDC-DIIVTTSEK-ADSLIRNRAS 134
Query: 234 SLSDIEVLVLDE 245
+ + LV+DE
Sbjct: 135 WIKAVSCLVVDE 146
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 18/143 (12%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT F+ IL + R LVL PTR + ++ + F ++V
Sbjct: 15 FHPGAGKTRRFLPQILAECARRRL-----RTLVLAPTRVVLSEMKE------AFHGLDVK 63
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ I L + + + EV+++DEA +
Sbjct: 64 FHTQAFSAHGSGREV-----IDAMCHATLTYRMLEPTR--VVNWEVIIMDEAHFLDPASI 116
Query: 255 ASQMKEIIRLCSRTRQTMLFSAT 277
A++ R + T+L +AT
Sbjct: 117 AARGWAAHRARANESATILMTAT 139
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 116 PIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174
P Q + LL G + + TG+GKT + I+ LL + + + P R L
Sbjct: 33 PPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL-----KNGGKAIYVTPLRAL 87
Query: 175 GVQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232
+ + +VA++ G + L+ DI+I T + LD L
Sbjct: 88 ---TNEKYLTFKDWELIGFKVAMTSGDYDTDDAW--LKNY-DIIITTYEK-LDSLWRHRP 140
Query: 233 FSLSDIEVLVLDE 245
L+++ VLDE
Sbjct: 141 EWLNEVNYFVLDE 153
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-06
Identities = 48/308 (15%), Positives = 92/308 (29%), Gaps = 32/308 (10%)
Query: 1 DDSSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKE 60
+ +E ++ K + S+ +D + + + D + + + G + L E
Sbjct: 84 KEEHEENNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVE 143
Query: 61 GKLKQVEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
K + + ++ P E L P Q
Sbjct: 144 QDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTL------------DPFQDT 191
Query: 121 TIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ 180
I G + A T GKT I + L RV+ P + L Q Y+
Sbjct: 192 AISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYR 245
Query: 181 VTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240
+V L G + + ++ T L L+ + ++
Sbjct: 246 ELLAEFG----DVGLMTGDITINPDA-------GCLVMTTEILRSMLYRGSEV-MREVAW 293
Query: 241 LVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM--TDAVNDLVSVSLTRPVRVFV 298
++ DE M D+ +E I L + + SAT+ + + ++P +
Sbjct: 294 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353
Query: 299 DNNHEVAL 306
N L
Sbjct: 354 TNFRPTPL 361
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-06
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 28/148 (18%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + I+ L + R L+L PTR + + E+
Sbjct: 26 LHPGAGKTKRILPSIVREAL-----LRRLRTLILAPTRVV---------------AAEME 65
Query: 195 LSVGGLEVKVQESVLRKC----PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250
++ GL ++ Q ++ + + L ++ + + ++V+DEA
Sbjct: 66 EALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEA-HFT 122
Query: 251 DEHFASQMKEIIRLCSRTR-QTMLFSAT 277
D + I + +AT
Sbjct: 123 DPCSVAARGYISTRVEMGEAAAIFMTAT 150
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 22/185 (11%), Positives = 51/185 (27%), Gaps = 41/185 (22%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + ++ + K R ++L PTR + ++Y+ L
Sbjct: 9 LHPGAGKTRRVLPQLVREAVKKRL-----RTVILAPTRVVASEMYE---ALRG------- 53
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ + VQ + L + + + ++DEA H
Sbjct: 54 EPIRYMTPAVQSERTGNEI-VDFMCHSTFTMKLLQGV--RVPNYNLYIMDEA------H- 103
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVND----LVSVSLTRPVRVF-VDNNHEVALNLR 309
++ + V+ + ++ T P ++ ++
Sbjct: 104 -----------FLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDEE 152
Query: 310 QEFVS 314
Sbjct: 153 TRIPD 157
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 41/184 (22%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + I+ L + R L+L PTR + ++ + L
Sbjct: 193 LHPGAGKTKRILPSIVREALKRRL-----RTLILAPTRVVAAEMEE---ALRGLP----- 239
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ +S + + L ++ + + ++V+DEA H
Sbjct: 240 ---IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEA------H- 287
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVND----LVSVSLTRPVRVF-VDNNHEVALNLR 309
++ ++ V + ++ T P ++ ++
Sbjct: 288 -----------FTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE 336
Query: 310 QEFV 313
+E
Sbjct: 337 REIP 340
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 41/184 (22%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G+GKT + I++ + Q R VL PTR + ++ + + V
Sbjct: 28 LHPGSGKTRKILPQIIKDAI-----QQRLRTAVLAPTRVVAAEMAE------ALRGLPV- 75
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ + + + + L L + + + + V+DEA H
Sbjct: 76 ----RYQTSAVQREHQGNEIVDVMCHATLTHRLMSPN--RVPNYNLFVMDEA------H- 122
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVND----LVSVSLTRPVRVF-VDNNHEVALNLR 309
++ + V + ++ T P +++ +L+
Sbjct: 123 -----------FTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQ 171
Query: 310 QEFV 313
E
Sbjct: 172 DEIP 175
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193
TG+GKT M I E +T L++VPT L Q +L F V
Sbjct: 114 VLPTGSGKTHVAMAAINEL---------STPTLIVVPTLAL---AEQWKERLGIFGEEYV 161
Query: 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
G +++ + ++T + + +L+ DE + E
Sbjct: 162 GEFSGR---------IKELKPLTVSTYDSAYVNAEKLG----NRFMLLIFDEVHHLPAES 208
Query: 254 FASQMKEII 262
+ + I
Sbjct: 209 YVQIAQMSI 217
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 32/146 (21%)
Query: 134 CAATGTGKTAAFM-LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192
TG+GKT + + + L +T L++VPT L Q +L F
Sbjct: 114 VLPTGSGKT--HVAMAAINEL--------STPTLIVVPTLAL---AEQWKERLGIFGEEY 160
Query: 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252
V G +++ + ++T D + + +L+ DE
Sbjct: 161 VGE-FSGRIKELK--------PLTVST----YDSAYVNAEKLGNRFMLLIFDEV-----H 202
Query: 253 HFASQMKEIIRLCSRTRQTMLFSATM 278
H ++ I S + +AT
Sbjct: 203 HLPAESYVQIAQMSIAPFRLGLTATF 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.97 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.97 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.97 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.96 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.96 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.95 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.95 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.95 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.95 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.95 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.95 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.94 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.94 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.94 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.94 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.94 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.94 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.93 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.93 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.93 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.93 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.93 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.92 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.92 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.91 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.91 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.91 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.91 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.9 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.88 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.87 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.87 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.86 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.85 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.85 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.85 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.84 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.8 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.79 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.79 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.79 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.77 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.76 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.71 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.69 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.63 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.6 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.59 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.52 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.49 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.28 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 99.17 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.11 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.53 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.5 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 98.48 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 98.43 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 98.38 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 98.33 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.79 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 97.54 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 97.53 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 97.5 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.49 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.44 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.44 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.35 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.33 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.26 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 97.23 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.2 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.13 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 97.06 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 97.05 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 97.03 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 96.96 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 96.88 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 96.87 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 96.86 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 96.85 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.79 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.75 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 96.74 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.72 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.66 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.63 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.58 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 96.58 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.57 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.56 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.53 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.43 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.3 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.28 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 96.24 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.23 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.13 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.12 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.08 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.99 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.95 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.9 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.82 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 95.71 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.67 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.64 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.63 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.62 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.53 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.48 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.46 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.29 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.22 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 95.13 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.1 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 95.08 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.06 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.04 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.95 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 94.91 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 94.86 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.82 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.77 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 94.74 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 94.73 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 94.71 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 94.71 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 94.68 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.56 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 94.55 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 94.38 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.33 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 94.31 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 94.3 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 94.29 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 94.23 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 94.22 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 94.19 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 94.19 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.12 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.93 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 93.91 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 93.7 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 93.7 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.66 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 93.62 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 93.47 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 93.44 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 93.42 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 93.42 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 93.4 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 93.31 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 93.23 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 93.18 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 92.99 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 92.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 92.78 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 92.68 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 92.07 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 91.91 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 91.66 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 91.64 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 91.5 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 91.48 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.41 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 91.08 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 91.07 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 91.02 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 90.98 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 90.79 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 90.74 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 90.72 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 90.54 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 90.53 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 90.52 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 90.4 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 90.11 | |
| 1w36_B | 1180 | RECB, exodeoxyribonuclease V beta chain; recombina | 90.08 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 89.86 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 89.6 | |
| 2l8b_A | 189 | Protein TRAI, DNA helicase I; RECD, hydrolase; NMR | 89.57 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 89.25 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 89.16 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 89.15 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 89.08 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 88.97 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 88.92 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 88.89 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 88.89 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 88.8 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 88.74 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 88.74 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 88.64 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 88.64 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 88.42 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 88.42 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 88.34 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 88.27 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 88.13 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 88.07 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 87.89 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 87.77 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 87.71 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 87.6 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 87.27 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 87.21 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 87.2 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 87.11 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 87.09 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 86.99 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 86.99 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 86.97 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 86.92 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 86.91 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 86.83 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 86.74 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 86.7 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 86.67 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 86.63 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 86.47 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 86.35 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 86.29 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 86.14 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 86.1 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 86.01 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 85.83 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 85.67 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 85.59 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 85.49 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 85.37 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 85.37 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 85.21 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 85.14 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 85.12 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 85.11 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 85.11 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 84.7 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 84.63 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 84.59 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 84.52 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 84.88 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 84.43 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 84.37 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 84.37 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 84.27 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 84.26 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 84.13 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 84.12 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 84.06 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 83.86 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 83.58 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 83.52 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 83.47 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 83.35 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 83.32 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 83.29 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 83.21 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 83.17 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 82.65 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 82.47 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 82.42 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 82.39 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 82.36 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 82.14 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 82.14 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 81.92 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 81.77 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 81.67 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 81.6 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 81.55 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 81.28 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 81.1 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 80.72 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 80.7 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 80.7 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 80.65 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 80.63 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 80.61 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 80.59 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 80.44 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 80.35 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 80.34 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 80.26 | |
| 3u4q_B | 1166 | ATP-dependent helicase/deoxyribonuclease subunit; | 80.01 |
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=297.97 Aligned_cols=214 Identities=35% Similarity=0.489 Sum_probs=196.0
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRV 165 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~ 165 (337)
....+|.++++++.+++++.++||..|+++|.++++.++.|++++++||||||||++|++|++..+.... ....++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 4457899999999999999999999999999999999999999999999999999999999999986543 22347789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
||++||++|+.|+++.++.+....++.+..++|+.....+...+..+++|+|+||++|.+++.+. ...+.++++||+||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDE 184 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRTTYLVLDE 184 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCCcccccEEEEeC
Confidence 99999999999999999999999999999999999988888888888999999999999998764 56789999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
||+|++.+|...+..+++.+++.+|+++||||+++.+..++..++++|+.|.++..+
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999987643
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=317.04 Aligned_cols=240 Identities=33% Similarity=0.536 Sum_probs=217.0
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC--CCCCeeEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--DDQNTRVL 166 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~l 166 (337)
...+|.+++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.++.... ...++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999876542 23477999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++|||+||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|++++.+. .+.+.++++||+|||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEA 212 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEETH
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEccH
Confidence 9999999999999999999988889999999999988888888888999999999999998764 567899999999999
Q ss_pred cccccccHHHHHHHHHHHc--CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHH
Q psy3143 247 DRMLDEHFASQMKEIIRLC--SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~ 324 (337)
|+|++.+|...+..++..+ +..+|+++||||+++.+..++..++.+|..+.+........++.|.++.+.. ..|.
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~ 289 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK---YAKR 289 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG---GGHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc---HHHH
Confidence 9999999999999999875 5788999999999999999999999999999998887788899999998876 4566
Q ss_pred HHHHHhhh
Q psy3143 325 NVLGLMLL 332 (337)
Q Consensus 325 ~~L~~ll~ 332 (337)
..|..+|.
T Consensus 290 ~~l~~~l~ 297 (434)
T 2db3_A 290 SKLIEILS 297 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666664
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=310.07 Aligned_cols=212 Identities=31% Similarity=0.464 Sum_probs=189.1
Q ss_pred CCCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC
Q psy3143 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDD 160 (337)
Q Consensus 83 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~ 160 (337)
++.|.....+|.+++|++.++++|..+||..|+++|.++||.++.| +|++++||||||||++|++|+++.+... .
T Consensus 84 ~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---~ 160 (300)
T 3fmo_B 84 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---N 160 (300)
T ss_dssp TTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---S
T ss_pred CCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---C
Confidence 3455667789999999999999999999999999999999999998 9999999999999999999999998532 2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
.++++|||+|||+||.|++..+..++.+. ++.+...+|+...... ....++|+||||++|++++.+.+.+.+++++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~ 237 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhce
Confidence 46789999999999999999999998765 6888888887764322 2456799999999999999876677899999
Q ss_pred EEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 240 VLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 240 ~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
+|||||||+|++ .+|...+..|++.+++.+|+++||||+++.+..++..++++|+.|.+..
T Consensus 238 ~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 999999999997 6899999999999999999999999999999999999999999998854
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=296.29 Aligned_cols=224 Identities=33% Similarity=0.529 Sum_probs=190.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC------CCC
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR------DDQ 161 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~------~~~ 161 (337)
....+|.+++|++.++++|..+|+..|+++|.++++.++.|+++++++|||||||++|++|+++.+..... ...
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 35578999999999999999999999999999999999999999999999999999999999999864431 123
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CCChhhCCEE
Confidence 578999999999999999999999988889999999998887777777788999999999999998764 5678999999
Q ss_pred EEecccccccccHHHHHHHHHHHc--CC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 242 VLDEADRMLDEHFASQMKEIIRLC--SR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 242 ViDEad~l~~~~~~~~~~~i~~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
|+||||++++.+|...+..++..+ +. ..|+++||||+++.+..++..++.+|..|.++.......+|+|++
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~~ 253 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceecC
Confidence 999999999999999999999854 33 679999999999999999999999999999988888888888864
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=292.58 Aligned_cols=208 Identities=45% Similarity=0.699 Sum_probs=192.3
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+++++++.++++|..+|+..|+++|.++++.++.|+++++++|||||||++|++|++..+.... .++++||+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~---~~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP---QRLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC---CSSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC---CCceEEEE
Confidence 346799999999999999999999999999999999999999999999999999999999999886543 35689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++|+.|+.+.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++.+.+.+.+..+++||+||||+
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 99999999999999999988899999999998887777777788999999999999998875567789999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
+++.+|...+..++..+++.+|+++||||+++.+.+++..++++|+.|.++
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999874
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=285.34 Aligned_cols=209 Identities=36% Similarity=0.513 Sum_probs=181.6
Q ss_pred CcCCcccc-CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC---CCCCCe
Q psy3143 88 EENSSFHQ-MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP---RDDQNT 163 (337)
Q Consensus 88 ~~~~~f~~-~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~~ 163 (337)
....+|.+ +++++.+++++.++||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... ....++
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 34567888 89999999999999999999999999999999999999999999999999999999875321 122577
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
++||++||++|+.|+.+.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.+++... .+.++++++||+
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEEE
Confidence 89999999999999999999886 4578888999988877777777788999999999999988764 667899999999
Q ss_pred ecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 244 DEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
||||++++.+|...+..++..+++.+|+++||||+++.+..++..++++|+.|.|
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999999999999999999999999999999875
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=283.13 Aligned_cols=212 Identities=41% Similarity=0.637 Sum_probs=188.7
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVL 166 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~l 166 (337)
....+|.++++++.++++|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+...... ..++++|
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 345689999999999999999999999999999999999999999999999999999999999988643321 2467899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++||++|+.|+.+.++.++...++.+..++|+.........+ .+++|+|+||++|.+++.....+.+.++++||+|||
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999999999888889999999988766655544 467999999999999887755567889999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
|++++.+|...+..++..++..+|+++||||+++.+..+++.++.+|..|.++.
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999998754
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=274.78 Aligned_cols=202 Identities=37% Similarity=0.628 Sum_probs=185.2
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|++++|++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---KDNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---SCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc---CCCeeEEEEeC
Confidence 579999999999999999999999999999999999999999999999999999999999987432 24678999999
Q ss_pred CHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|++|+.|+.+.+..+.... +..+..++|+.........+..+++|+|+||++|.+.+.+. ...+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHh
Confidence 9999999999999998776 78899999999887777777788999999999999988763 567899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEE
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i 296 (337)
.+.+|...+..++..+++..|+++||||+++.+.+++..++.+|..|
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999899999999999999999999999999876
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=284.33 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=177.5
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+++++++.++++|..+||..|+++|.++++.++.|+++++++|||||||++|++|+++.+... ..++++||+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil 104 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---FKETQALVL 104 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---CCCceEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999987432 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcC-CCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+||++|+.|+.+.++.++...+..+..++|+.........+..+ ++|+|+||++|.+++... .+.+..+++||+||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCch
Confidence 99999999999999999888888898899988766655555444 899999999999988763 5678899999999999
Q ss_pred ccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
++++.+|...+..+++.++...|+++||||+++.+.+++..++++|+.|.++.
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999998753
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=274.53 Aligned_cols=205 Identities=41% Similarity=0.576 Sum_probs=186.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
+|.++++++.+++++..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+........++++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 59999999999999999999999999999999999999999999999999999999999998654444457899999999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
++|+.|+.+.+..+... +++..++|+.........+..+++|+|+||+++.+++.+ +.+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999988754 677888888887766666777889999999999998876 366789999999999999999
Q ss_pred ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 252 EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 252 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
.+|...+..++..+++..|+++||||+++.+..++..++.+|..|.+.
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999999999999999999999999999999998764
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=278.82 Aligned_cols=206 Identities=29% Similarity=0.482 Sum_probs=183.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+++++++.++++|..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++||+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~~lil 98 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---NLSTQILIL 98 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---CCCceEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999987532 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+||++|+.|+++.++.++... ++++..++|+.........+. +++|+|+||++|.+++.. +.+.+.++++||+||||
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEAD 176 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCch
Confidence 999999999999999988665 788999999988776655554 579999999999998876 35668899999999999
Q ss_pred cccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 248 RMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 248 ~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
++++.+ |...+..+++.++...|+++||||+++.+.+++..++++|+.|.++
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999987 9999999999999899999999999999999999999999998764
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=285.10 Aligned_cols=205 Identities=40% Similarity=0.613 Sum_probs=183.4
Q ss_pred CCccccCC--CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEE
Q psy3143 90 NSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVL 166 (337)
Q Consensus 90 ~~~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~l 166 (337)
..+|.+++ +++.++++|..+||..|+++|.++++.++.|++++++||||||||++|++|+++.+...... ..++++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 35677777 99999999999999999999999999999999999999999999999999999988653321 2367899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++||++||.|+++.++.++...+..+..++|+.........+..+++|+||||++|..++.....+.+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999888999999999998888777777789999999999999998766677899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCe
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPV 294 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~ 294 (337)
|+|++.+|...+..+++.++..+|+++||||+++.+..+++.+++++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987654
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=280.02 Aligned_cols=206 Identities=32% Similarity=0.535 Sum_probs=185.1
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|+++++++.+++++.++|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++||++|
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P 80 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---RAEVQAVITAP 80 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEECS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---cCCceEEEEcC
Confidence 579999999999999999999999999999999999999999999999999999999999987432 24678999999
Q ss_pred CHHHHHHHHHHHHHHhhcc----CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFT----SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++|+.|+++.++.+.... ++.+..++|+.........+..+++|+|+||++|.+++.+ +.+.+.++++||+|||
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 159 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEA 159 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCc
Confidence 9999999999999988766 6888888998876655555556789999999999998876 3566889999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
|++.+.+|...+..++..+++..|+++||||+++++.+++..++++|..|.+..
T Consensus 160 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999998999999999999999999999999999998754
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=276.93 Aligned_cols=208 Identities=33% Similarity=0.531 Sum_probs=178.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.++++++.+++.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++||++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---~~~~~~lil~ 89 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLA 89 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---CCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---CCCceEEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999987432 2467899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|.+.+.+. .+.+.++++||+||||++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHH
Confidence 999999999999999988888999999998876665555444 799999999999988764 667899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
.+.+|...+..++..+++..|+++||||+++.+.+++..++.+|+.|.+...+
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999886543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=270.07 Aligned_cols=205 Identities=36% Similarity=0.615 Sum_probs=182.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|++++|++.++++|..+|+..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil~ 89 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMC 89 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---TTCCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---CCCEEEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999887422 2356899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
||++|+.|+.+.++.+.... ++++..++|+.........+. ..++|+|+||++|..++.+. .+.+.+++++|+||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCHH
Confidence 99999999999999988765 789999999988766655554 45799999999999988763 5678999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
++++ .+|...+..+++.+++..|+++||||+++.+.+++..++++|..|.+
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 9987 58889999999999889999999999999999999999999998864
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=277.00 Aligned_cols=212 Identities=31% Similarity=0.493 Sum_probs=179.9
Q ss_pred cCCccccC----CCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 89 ENSSFHQM----NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 89 ~~~~f~~~----~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
...+|.++ ++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.. ....+++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--~~~~~~~ 100 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ--PANKGFR 100 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--CCSSSCC
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--cccCCce
Confidence 34678876 89999999999999999999999999999999999999999999999999999998843 2234678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH-HHHHhcCCCEEEECcHHHHHHHhcCC-CCCCCCccEEE
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ-ESVLRKCPDIVIATPGRLLDHLHNTP-SFSLSDIEVLV 242 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~l~~~~~iV 242 (337)
+||++||++|+.|+++.+..++...++.+..+.|+...... ......+++|+|+||++|..++.... .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 99999999999999999999998888888877765433221 12234567999999999999997753 45689999999
Q ss_pred Eeccccccc---ccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 243 LDEADRMLD---EHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 243 iDEad~l~~---~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
+||||++++ .+|...+..++..+ +...|+++||||+++++..++..++++|+.|.++..+
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 244 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC--
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 999999988 57888888888776 4578999999999999999999999999999987653
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=291.38 Aligned_cols=241 Identities=34% Similarity=0.481 Sum_probs=208.3
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC---------
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--------- 158 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--------- 158 (337)
....+|.+++|++.++++|..+||..|+++|.++++.++.|++++++||||||||++|++|+++.+.....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 33467999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred ------CCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC
Q psy3143 159 ------DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232 (337)
Q Consensus 159 ------~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 232 (337)
...++++||++||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++... .
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-K 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-S
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC-C
Confidence 122478999999999999999999999988889999999999888877777888999999999999998764 5
Q ss_pred CCCCCccEEEEecccccccccHHHHHHHHHHHc--CC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCe
Q psy3143 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC--SR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNL 308 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i 308 (337)
+.+..+++||+||||++++.+|...+..++... +. ..|+++||||+++.+..+...++.+|..+.+........++
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 678999999999999999999999999988743 32 67999999999999999999999999999988777778899
Q ss_pred eEEEEEecCcchhhHHHHHHHhhh
Q psy3143 309 RQEFVSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 309 ~q~~~~~~~~~~~~~~~~L~~ll~ 332 (337)
.+.++.+.. ..+...|..++.
T Consensus 251 ~~~~~~~~~---~~~~~~l~~~l~ 271 (417)
T 2i4i_A 251 TQKVVWVEE---SDKRSFLLDLLN 271 (417)
T ss_dssp EEEEEECCG---GGHHHHHHHHHH
T ss_pred eEEEEEecc---HhHHHHHHHHHH
Confidence 999998876 356666666664
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=290.47 Aligned_cols=241 Identities=30% Similarity=0.473 Sum_probs=215.1
Q ss_pred CCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE
Q psy3143 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165 (337)
Q Consensus 86 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 165 (337)
......+|.++++++.++++|..+||..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~ 108 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQA 108 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCCE
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---cCCceE
Confidence 33445789999999999999999999999999999999999999999999999999999999999877322 246789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
||++||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.+. .+.+..+++||+||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDE 187 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDE 187 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEcc
Confidence 99999999999999999999988899999999999988887777788899999999999998764 66788999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
||++++.+|...+..+++.+++..|+++||||+++.+..+...++.+|..+.+........++.|+++.+... ..+..
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~ 265 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE--EWKFD 265 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--THHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--HhHHH
Confidence 9999999999999999999999999999999999999999999999999998877777788999999988765 34666
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..++.
T Consensus 266 ~l~~~~~ 272 (410)
T 2j0s_A 266 TLCDLYD 272 (410)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=295.57 Aligned_cols=241 Identities=29% Similarity=0.424 Sum_probs=184.0
Q ss_pred CCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCC
Q psy3143 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQ 161 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 161 (337)
..|.....+|.+++|++.++++|..+||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+... ..
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~---~~ 161 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---NK 161 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT---SC
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc---CC
Confidence 444556779999999999999999999999999999999999987 8999999999999999999999887432 23
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
++++|||+||++|+.|+++.+..+..+. ++.+....++...... ....++|+||||++|++++.+.+.+.+.++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 5689999999999999999999988764 6777777776653221 23456899999999999998766777899999
Q ss_pred EEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcc
Q psy3143 241 LVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319 (337)
Q Consensus 241 iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~ 319 (337)
|||||||++++ .+|...+..+.+.++..+|+++||||++..+..+...++.+|..+.+.........+.|.++.+...
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 317 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR- 317 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH-
Confidence 99999999987 6888899999999999999999999999999999999999999999988888888999999988764
Q ss_pred hhhHHHHHHHhhh
Q psy3143 320 EVRLYNVLGLMLL 332 (337)
Q Consensus 320 ~~~~~~~L~~ll~ 332 (337)
..++..|..++.
T Consensus 318 -~~~~~~l~~~~~ 329 (479)
T 3fmp_B 318 -DEKFQALCNLYG 329 (479)
T ss_dssp -------------
T ss_pred -HHHHHHHHHHHh
Confidence 356666665554
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=277.62 Aligned_cols=240 Identities=32% Similarity=0.489 Sum_probs=213.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
....+|.++++++.+++.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..+.++||
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~li 113 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---LKATQALV 113 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---SCSCCEEE
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---CCceeEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999987432 24678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
++||++|+.|+.+.+..++...+..+...+|+.........+. ..++|+|+||++|.+++... .+.+..+++||+|||
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEA 192 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECH
Confidence 9999999999999999999888999999999988776655554 67899999999999998773 567888999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|++.+.+|...+..++..+++..|+++||||+++.+..+...++.+|..+.+.........+.+.++.+... ..+...
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 270 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE--EWKLDT 270 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS--TTHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH--HhHHHH
Confidence 999999999999999999999999999999999999999999999999999888888888999999988765 356777
Q ss_pred HHHhhhc
Q psy3143 327 LGLMLLR 333 (337)
Q Consensus 327 L~~ll~~ 333 (337)
|..++..
T Consensus 271 l~~~~~~ 277 (414)
T 3eiq_A 271 LCDLYET 277 (414)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 7776643
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=276.03 Aligned_cols=241 Identities=29% Similarity=0.424 Sum_probs=208.3
Q ss_pred CCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCC
Q psy3143 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQ 161 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 161 (337)
..|.....+|.++++++.++++|.++|+..|+++|.++++.++.+ +++++++|||+|||++|++|+++.+... ..
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---~~ 94 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---NK 94 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---SC
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc---CC
Confidence 444566788999999999999999999999999999999999987 8999999999999999999999987432 24
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
++++||++||++|+.|+.+.+..+.... +..+....++...... ....++|+|+||++|.+++.+.+.+.+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 6689999999999999999999988764 6778888777653321 23457999999999999997766777899999
Q ss_pred EEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcc
Q psy3143 241 LVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319 (337)
Q Consensus 241 iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~ 319 (337)
||+||||++++ .++...+..+...++...|+++||||+++.+..+...++.+|..+.+.........+.+.++.+...
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR- 250 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH-
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh-
Confidence 99999999987 6788888899999999999999999999999999999999999999888888888999999987764
Q ss_pred hhhHHHHHHHhhh
Q psy3143 320 EVRLYNVLGLMLL 332 (337)
Q Consensus 320 ~~~~~~~L~~ll~ 332 (337)
..+...|..++.
T Consensus 251 -~~~~~~l~~~~~ 262 (412)
T 3fht_A 251 -DEKFQALCNLYG 262 (412)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh
Confidence 567777777764
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=273.07 Aligned_cols=235 Identities=32% Similarity=0.522 Sum_probs=205.2
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|++++|++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil~ 96 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---LNKIQALIMV 96 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---SCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---cCCccEEEEc
Confidence 4679999999999999999999999999999999999999999999999999999999999887432 2466899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+.+.++.+....++.+....|+.........+...++|+|+||++|.+++.+. ...+.++++||+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchHh
Confidence 9999999999999999988889999999998887776667778899999999999988763 566899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
.+.+|...+..++..++...|+++||||++..+...+..++.+|..+.+.. .....++.+++..+.. ..|...|..
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~k~~~l~~ 251 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE---RQKLHCLNT 251 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG---GGHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech---hhHHHHHHH
Confidence 999999999999998888999999999999999999999999998876643 3455778888887765 356666666
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
++.
T Consensus 252 ~~~ 254 (400)
T 1s2m_A 252 LFS 254 (400)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=269.56 Aligned_cols=236 Identities=34% Similarity=0.555 Sum_probs=201.7
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|++++|++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 83 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMC 83 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC---TTCCCEEEEC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc---CCCeeEEEEC
Confidence 3579999999999999999999999999999999999999999999999999999999999887422 2356899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
||++|+.|+.+.+..+.... ++++..++|+.........+. ..++|+|+||++|..++.+. .+.+.++++||+||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHH
Confidence 99999999999999988765 789999999988776665554 44799999999999988764 5678999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc-ccCCeeEEEEEecCcchhhHHH
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE-VALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~-~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
++.+ .++...+..++...+...|+++||||+++.+..++..++.+|..+.+..... ....+.++++.+... .+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 239 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN---EKNR 239 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGG---GHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCch---hHHH
Confidence 9987 4788889999998888999999999999999999999999999998866543 446788888887764 4555
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..++.
T Consensus 240 ~l~~~l~ 246 (391)
T 1xti_A 240 KLFDLLD 246 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=273.74 Aligned_cols=236 Identities=31% Similarity=0.472 Sum_probs=186.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|+++++++.+++++..+|+..|+++|.++++.++.++++++++|||+|||++|++|+++.+... ..++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---CCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---CCCCCEEEEc
Confidence 3579999999999999999999999999999999999999999999999999999999999987432 2467899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+.+.+..+....++.+..++|+.........+. .++|+|+||++|.+.+.+. .+.+.++++||+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHh
Confidence 99999999999999998888899999999988766555544 4699999999999988764 566889999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
.+.+|...+..++..+++..|+++||||+++.+..+...++.+|..+.+........++.++++.+... ..+...|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE--EYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--hhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777778888988877754 345666666
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
++.
T Consensus 253 ~~~ 255 (394)
T 1fuu_A 253 LYD 255 (394)
T ss_dssp ---
T ss_pred HHh
Confidence 553
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=265.99 Aligned_cols=233 Identities=30% Similarity=0.464 Sum_probs=203.5
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
..+|++++|++.++++|..+|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... ..++++||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~li 80 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---DASPQAIC 80 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---CCSCCEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---CCCccEEE
Confidence 478999999999999999999999999999999999998 8999999999999999999999987432 24678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
++||++|+.|+++.+..++...++.+...+++..... ....++|+|+||++|..++.+. .+.+.++++||+||||
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEAD 155 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChh
Confidence 9999999999999999999888888888887654222 2345799999999999988763 6678999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
++.+ .++...+..+...++...|+++||||+++.+..+...++.++..+.+.........+.+.+..+... ..+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 233 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE--ADKFDV 233 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH--HHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch--HHHHHH
Confidence 9887 6788999999999999999999999999999999999999999998877777778899999887654 567777
Q ss_pred HHHhhh
Q psy3143 327 LGLMLL 332 (337)
Q Consensus 327 L~~ll~ 332 (337)
|..++.
T Consensus 234 l~~~~~ 239 (395)
T 3pey_A 234 LTELYG 239 (395)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777764
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=257.31 Aligned_cols=230 Identities=31% Similarity=0.512 Sum_probs=199.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..+|.+++|++.++++|.++|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+.. ..+.++||+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----~~~~~~lil 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----NNGIEAIIL 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----SSSCCEEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----cCCCcEEEE
Confidence 357999999999999999999999999999999999988 699999999999999999999988742 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++|+.|+.+.+..+....++.+...+|+.........+. .++|+|+||++|.+++... .+.+.++++||+||||.
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchH
Confidence 999999999999999998888889999999988776655554 5799999999999988763 56689999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
+.+.+|...+..++..+++..+++++|||+++.+..+...++.++..+.... ...+.+.|+.+.. ..++..|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~l~ 231 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNE---NERFEALC 231 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCG---GGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeCh---HHHHHHHH
Confidence 9999999999999999999999999999999999999999998887776532 3467888887765 46667777
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.++.
T Consensus 232 ~~l~ 235 (367)
T 1hv8_A 232 RLLK 235 (367)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 6664
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=278.66 Aligned_cols=228 Identities=30% Similarity=0.462 Sum_probs=189.5
Q ss_pred CccccCC----CCHHHHHHHHhCCCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCe
Q psy3143 91 SSFHQMN----LSRPLLKAIGALNYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNT 163 (337)
Q Consensus 91 ~~f~~~~----l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~ 163 (337)
.+|.++. |++.++++|..+||..|+++|.++++.++ .+++++++||||+|||++|++|+++.+...... ..++
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 3455554 99999999999999999999999999999 788999999999999999999999998754322 3467
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhc----cCcEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQF----TSVEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
++|||+||++||.|+...+..+... ....+..++|+.........+ ...++|+||||++|.+++.......+..+
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 8999999999999999999988642 356788888888877665555 44789999999999998876433457889
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcC-------CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC----ccccCC
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCS-------RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN----HEVALN 307 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~----~~~~~~ 307 (337)
++|||||||+|++++|...+..|+..++ ..+|+++||||+++.+..++..++.+|..+.+... ......
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 256 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 256 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccc
Confidence 9999999999999999999888876653 36799999999999999999999999988876542 233466
Q ss_pred eeEEEEEecCc
Q psy3143 308 LRQEFVSFSNI 318 (337)
Q Consensus 308 i~q~~~~~~~~ 318 (337)
+.+.++.+...
T Consensus 257 i~~~~~~~~~~ 267 (579)
T 3sqw_A 257 IDQSVVISEKF 267 (579)
T ss_dssp EEEEEEEESST
T ss_pred cceEEEEecch
Confidence 88888877654
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=273.23 Aligned_cols=228 Identities=30% Similarity=0.463 Sum_probs=188.0
Q ss_pred CccccCC----CCHHHHHHHHhCCCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCe
Q psy3143 91 SSFHQMN----LSRPLLKAIGALNYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNT 163 (337)
Q Consensus 91 ~~f~~~~----l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~ 163 (337)
.+|.++. |++.+++++..+||..|+++|.++++.++ .+++++++||||||||++|++|+++.+...... ..++
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3455543 99999999999999999999999999999 678999999999999999999999998754422 2357
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhc----cCcEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQF----TSVEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
++|||+||++||.|++..+..+... ....+..++|+.........+ ...++|+||||++|.+++.+.....++.+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999987543 246678888888776655544 45789999999999998876433457889
Q ss_pred cEEEEecccccccccHHHHHHHHHHHc-------CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC----ccccCC
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLC-------SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN----HEVALN 307 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~-------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~----~~~~~~ 307 (337)
++|||||||+|++++|...+..+...+ ...+|+++||||+++.+..++..++.+|..+.+... ......
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 999999999999999999988887665 237799999999999999999999999888876433 234466
Q ss_pred eeEEEEEecCc
Q psy3143 308 LRQEFVSFSNI 318 (337)
Q Consensus 308 i~q~~~~~~~~ 318 (337)
+.+.++.+...
T Consensus 308 ~~~~~~~~~~~ 318 (563)
T 3i5x_A 308 IDQSVVISEKF 318 (563)
T ss_dssp EEEEEEEESST
T ss_pred CceEEEECchh
Confidence 88888877654
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=243.90 Aligned_cols=208 Identities=35% Similarity=0.494 Sum_probs=183.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
|++.+.++|..+|+..|+++|.++++.++.++++++++|||+|||++|++|++.. +.++||++||++|+.|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHH
Confidence 5788999999999999999999999999999999999999999999999998874 5679999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~ 257 (337)
+.+.+..++...+..+..++|+.........+.. ++|+|+||++|.+++.. ..+.+.++++||+||||++.+.+|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHH
Confidence 9999999998888999999999887766555544 79999999999998876 355688899999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcc
Q psy3143 258 MKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319 (337)
Q Consensus 258 ~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~ 319 (337)
+..++...+...++++||||+++.+...+..++.++..+... ....++.+.++.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 208 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW 208 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH
Confidence 999999999999999999999999999999999998887532 34566888888877643
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=272.94 Aligned_cols=202 Identities=19% Similarity=0.212 Sum_probs=170.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..|..+++++.+...+...++..|+++|.++++.+..|++++++||||||||++|.+|++..+. .++++||++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~P 235 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSP 235 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEES
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcC
Confidence 4677788888888888778888899999999999999999999999999999999999999873 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
|++|+.|+++.+..+.. .++++.|+.. ....++|+|+||++|.+++.+. ...+.++++|||||||+|.
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTT
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhcc
Confidence 99999999999998764 5777888765 3355799999999999999874 4457899999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCchh--HHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDA--VNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~--~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
+.+|...+..++..++...|+|+||||+++. +..++......|..+..... .+..+.+++
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~ 365 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYL 365 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEE
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEE
Confidence 9999999999999999999999999999875 45667777778877776543 233344444
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=245.16 Aligned_cols=201 Identities=17% Similarity=0.133 Sum_probs=157.0
Q ss_pred HHHHHHHhC-CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 101 PLLKAIGAL-NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 101 ~l~~~l~~~-~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.+.+.+++. |+ .|+++|.++++.++.|++++++||||||||++|++|++..+ ..++++||++||++|+.|++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------cCCCEEEEEECCHHHHHHHH
Confidence 344555553 55 79999999999999999999999999999999999988876 24678999999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCccH---HHHHHHHhcC-CCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc----
Q psy3143 180 QVTRQLAQFTSVEVALSVGGLEV---KVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD---- 251 (337)
Q Consensus 180 ~~~~~l~~~~~~~v~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~---- 251 (337)
+.++.++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++..
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 99999887 78999999999987 3344445444 89999999999988764 5577899999999987653
Q ss_pred -------ccHHHH-HHHHHHHcC-----------CCCeEEEEeec-CchhHH-HHHHhhCCCCeEEEeCCCccccCCeeE
Q psy3143 252 -------EHFASQ-MKEIIRLCS-----------RTRQTMLFSAT-MTDAVN-DLVSVSLTRPVRVFVDNNHEVALNLRQ 310 (337)
Q Consensus 252 -------~~~~~~-~~~i~~~~~-----------~~~q~i~~SAT-~~~~~~-~~~~~~~~~p~~i~~~~~~~~~~~i~q 310 (337)
.+|... +..++..++ ...|+++|||| .|..+. .+...++. +.+........++.|
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 566666 777777766 78999999999 565544 22332222 333444556677888
Q ss_pred EEEEec
Q psy3143 311 EFVSFS 316 (337)
Q Consensus 311 ~~~~~~ 316 (337)
.|+.++
T Consensus 234 ~~~~~~ 239 (414)
T 3oiy_A 234 VRISSR 239 (414)
T ss_dssp EEESSC
T ss_pred eeeccC
Confidence 887663
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=239.51 Aligned_cols=226 Identities=17% Similarity=0.157 Sum_probs=170.1
Q ss_pred CCccccCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+.++++++.+.+.|+. +||..|+++|.++|+.++.|+|+++.+|||+|||++|++|++.. ++++|||
T Consensus 20 ~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------~g~~lVi 90 (591)
T 2v1x_A 20 AWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------DGFTLVI 90 (591)
T ss_dssp GGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------SSEEEEE
T ss_pred ccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------CCcEEEE
Confidence 3455678999999999998 69999999999999999999999999999999999999999742 4689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH------hcCCCEEEECcHHHH------HHHhcCCCCCCC
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL------RKCPDIVIATPGRLL------DHLHNTPSFSLS 236 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~Ilv~Tp~~l~------~~l~~~~~~~l~ 236 (337)
+|+++|+.|+...+..+ ++.+..+.|+.........+ ...++|+|+||++|. +.+.. ...+.
T Consensus 91 sP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~ 164 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEAR 164 (591)
T ss_dssp CSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTT
T ss_pred eCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhcc
Confidence 99999999999999886 57888888887765543332 356899999999874 23322 33477
Q ss_pred CccEEEEeccccccccc--HHHHHHH--HHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 237 DIEVLVLDEADRMLDEH--FASQMKE--IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~--~~~~~~~--i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
.+++|||||||++.+++ |.+.+.. ++....+..|+++||||+++.+...+..++..+..+.+.. .....++...+
T Consensus 165 ~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v 243 (591)
T 2v1x_A 165 RFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEV 243 (591)
T ss_dssp CEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEE
T ss_pred CCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEE
Confidence 89999999999999876 6665554 3444445789999999999998887777666543333222 23334454333
Q ss_pred EEecCcchhhHHHHHHHhhh
Q psy3143 313 VSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 313 ~~~~~~~~~~~~~~L~~ll~ 332 (337)
.. .......++..|..++.
T Consensus 244 ~~-~~~~~~~~~~~l~~~l~ 262 (591)
T 2v1x_A 244 RQ-KPSNTEDFIEDIVKLIN 262 (591)
T ss_dssp EE-CCSSHHHHHHHHHHHHT
T ss_pred Ee-CCCcHHHHHHHHHHHHH
Confidence 33 33333566666666664
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=252.81 Aligned_cols=194 Identities=18% Similarity=0.141 Sum_probs=157.2
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
..|| .|+++|.++++.++.|+|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.+..++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------~~~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------hcCCeEEEEechHHHHHHHHHHHHHhh-
Confidence 3577 69999999999999999999999999999999988888876 246789999999999999999999977
Q ss_pred ccCcEEEEEeCCccH---HHHHHHHhcC-CCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc----------c-c
Q psy3143 188 FTSVEVALSVGGLEV---KVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML----------D-E 252 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~----------~-~ 252 (337)
..++++..++|+... ..+...+..+ ++|+||||++|++++.. +.++++++|||||||++. + .
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999876 4455555554 89999999999988764 557889999999997654 4 6
Q ss_pred cHHHH-HHHHHHHcC-----------CCCeEEEEeec-CchhHHH-HHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 253 HFASQ-MKEIIRLCS-----------RTRQTMLFSAT-MTDAVND-LVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 253 ~~~~~-~~~i~~~~~-----------~~~q~i~~SAT-~~~~~~~-~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
+|... +..+++.++ ...|+++|||| .|..+.. +....+. +.+........++.|.|+.+.
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~ 296 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR 296 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC
Confidence 77677 788888776 78999999999 5655542 3333332 444455566788999998763
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=241.45 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=154.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
+|.+++|++.+.+.+...||..|+++|.++++. +..+++++++||||||||++|.+|+++.+.. .+++++|++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----QGGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----HCSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCCEEEEEcC
Confidence 589999999999999999999999999999998 8889999999999999999999999988753 2578999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++||.|+++.++.+.. .+++++..+|+...... ....++|+|+||++|..++.+. ...++++++|||||||++.
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccC
Confidence 99999999999865543 47889999887653321 1235799999999999988774 3447899999999999998
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
+..+...+..++..++...|+|+||||+++
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n 181 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN 181 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC
Confidence 888888888888877768999999999986
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=237.49 Aligned_cols=179 Identities=21% Similarity=0.283 Sum_probs=152.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+|.+++|++.+.+.+...||..|+++|.++++. +..+++++++||||||||++|.+++++.+.. .+++++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~il~i~ 82 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----NGGKAIYVT 82 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSEEEEEC
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----CCCeEEEEe
Confidence 5799999999999999999999999999999999 7889999999999999999999999988753 256899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|+++||.|++..++.+. ..++.++..+|+...... .+ ..++|+|+||++|..++.+. ...++++++||+||||.+
T Consensus 83 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 83 PLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHR-PEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp SCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHC-CGGGGGEEEEEECSGGGG
T ss_pred CcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCC-hhHhhccCEEEEechhhc
Confidence 99999999999886443 347888888887654321 12 35799999999999988774 334889999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+..+...+..++..++ ..|+|+||||+++
T Consensus 158 ~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n 187 (715)
T 2va8_A 158 NDPERGPVVESVTIRAK-RRNLLALSATISN 187 (715)
T ss_dssp GCTTTHHHHHHHHHHHH-TSEEEEEESCCTT
T ss_pred CCcccchHHHHHHHhcc-cCcEEEEcCCCCC
Confidence 87778888887776665 7899999999985
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=252.28 Aligned_cols=193 Identities=21% Similarity=0.246 Sum_probs=157.8
Q ss_pred HHHH-hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 104 KAIG-ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 104 ~~l~-~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
+.+. .+||. | ++|.++++.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----KGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----TSCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----cCCeEEEEeccHHHHHHHHHHH
Confidence 4444 47999 9 9999999999999999999999999998 88998888753 3678999999999999999999
Q ss_pred HHHhhccCc----EEEEEeCCccHHHH---HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 183 RQLAQFTSV----EVALSVGGLEVKVQ---ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 183 ~~l~~~~~~----~v~~~~~~~~~~~~---~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
+.++...++ .++.++|+.....+ ...+.. ++|+||||++|.+++.+ ++++++|||||||+|++ |.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~ 191 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--AS 191 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--ST
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--cc
Confidence 999988888 89999999877653 334455 89999999999997754 67899999999999988 45
Q ss_pred HHHHHHHHHc-----------CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEE
Q psy3143 256 SQMKEIIRLC-----------SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313 (337)
Q Consensus 256 ~~~~~i~~~~-----------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~ 313 (337)
..+..++..+ +...|+++||||+++. ..+...++.++..+.+........++.|.++
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~ 259 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV 259 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe
Confidence 6777777665 3567899999999987 5444444555555666666666778888877
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=232.18 Aligned_cols=176 Identities=21% Similarity=0.219 Sum_probs=140.2
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
..++..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++|||+||++|+.|+...+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT-TCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc-CCCCeEEEEECCHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999998865432 23478999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEI 261 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i 261 (337)
..++...++.+..++|+.....+...+...++|+|+||++|.+.+.......+..+++|||||||++.... +...+..+
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99988888999999998765444444555689999999999999877432268899999999999987654 44444333
Q ss_pred HHH-----cCCCCeEEEEeecCc
Q psy3143 262 IRL-----CSRTRQTMLFSATMT 279 (337)
Q Consensus 262 ~~~-----~~~~~q~i~~SAT~~ 279 (337)
+.. .++..++++||||+.
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHhhcccCCCCCeEEEEeCccc
Confidence 332 246789999999997
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=226.17 Aligned_cols=171 Identities=20% Similarity=0.204 Sum_probs=133.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
++...|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++|||+||++|+.|+...+..++..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 45567999999999999999999999999999999999999998865432 23678999999999999999999999988
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH-HHHHHHH-c-
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ-MKEIIRL-C- 265 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~-~~~i~~~-~- 265 (337)
.++.+..++|+.........+..+++|+|+||++|.+++.......+..+++|||||||++.+.+.... +..++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 899999999998766555555566899999999999999774332689999999999999987764333 3233322 2
Q ss_pred --CCCCeEEEEeecCch
Q psy3143 266 --SRTRQTMLFSATMTD 280 (337)
Q Consensus 266 --~~~~q~i~~SAT~~~ 280 (337)
.+..|+++||||++.
T Consensus 162 ~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 162 SASQLPQILGLTASVGV 178 (556)
T ss_dssp C---CCEEEEEESCCCC
T ss_pred ccCCCCeEEEEeCCccc
Confidence 356899999999953
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=240.27 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=151.0
Q ss_pred ccccCC--CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 92 SFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 92 ~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
+|.+++ |++.+.+.+...||..|+++|.++++.+..+++++++||||||||++|.+|+++.+.. +++++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEe
Confidence 578888 9999999999999999999999999999999999999999999999999999988752 56899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|+++||.|+++.++.+. ..+++++..+|+...... ....++|+|+||++|..++.+. ...++++++||+||||.+
T Consensus 76 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEeeeeec
Confidence 99999999999886443 347888888887653221 1236799999999999988774 344789999999999999
Q ss_pred ccccHHHHHHHHHHHc---CCCCeEEEEeecCchhHHHHHHhhCC
Q psy3143 250 LDEHFASQMKEIIRLC---SRTRQTMLFSATMTDAVNDLVSVSLT 291 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~ 291 (337)
.+.++...+..++..+ .+..|+|+||||+++ ...+. .++.
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~ 193 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLD 193 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTT
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhC
Confidence 8877666666655443 678999999999986 34433 3554
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=222.84 Aligned_cols=192 Identities=20% Similarity=0.182 Sum_probs=150.9
Q ss_pred CccccCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..|++++|++.+.+.|++ +|+..|+++|.++++.++.|+++++++|||+|||++|++|++.. .+++|||+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~ 72 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVS 72 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEEC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEEC
Confidence 479999999999999998 79999999999999999999999999999999999999998742 45799999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|+++|+.|+...+..+ ++.+..+.++....... ......++|+|+||++|...... ..+...++.+|||||
T Consensus 73 P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDE 147 (523)
T ss_dssp SCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESS
T ss_pred ChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeC
Confidence 9999999999988875 47777787776654432 23345689999999999632111 123357899999999
Q ss_pred cccccccc--HHHHHHH---HHHHcCCCCeEEEEeecCchhHHHHHH--hhCCCCeEEE
Q psy3143 246 ADRMLDEH--FASQMKE---IIRLCSRTRQTMLFSATMTDAVNDLVS--VSLTRPVRVF 297 (337)
Q Consensus 246 ad~l~~~~--~~~~~~~---i~~~~~~~~q~i~~SAT~~~~~~~~~~--~~~~~p~~i~ 297 (337)
||++.+++ |...+.. +...+ +..+++++|||+++.+...+. ..+.+|..+.
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 205 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE
T ss_pred ccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe
Confidence 99998876 6555544 34444 468999999999998765443 3345666554
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=224.61 Aligned_cols=168 Identities=23% Similarity=0.217 Sum_probs=139.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++|||+||++|+.|+...+..++...++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 36899999999999999999999999999999999999998865432 23678999999999999999999999988899
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHc-----
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC----- 265 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~----- 265 (337)
.+..++|+.........+..+++|+|+||++|..++.......+..+++|||||||++...+ +...+..++...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999999876555455555689999999999999877433268899999999999998775 444444444332
Q ss_pred CCCCeEEEEeecCch
Q psy3143 266 SRTRQTMLFSATMTD 280 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~ 280 (337)
....|+++||||++.
T Consensus 162 ~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 162 DPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCCEEEEEESCCCC
T ss_pred CCCCeEEEEecCccc
Confidence 255799999999964
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=201.78 Aligned_cols=167 Identities=24% Similarity=0.243 Sum_probs=119.5
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH-HHHHHHHHhhc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ-VYQVTRQLAQF 188 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q-~~~~~~~l~~~ 188 (337)
....|+++|.++++.++.++++++++|||+|||++|+++++..+........++++||++|+++|+.| +.+.+..+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 45578999999999999999999999999999999999998877543222346789999999999999 67788877654
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC-----CCCCCccEEEEecccccccccHHH-HHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-----FSLSDIEVLVLDEADRMLDEHFAS-QMKEII 262 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-----~~l~~~~~iViDEad~l~~~~~~~-~~~~i~ 262 (337)
++.+..+.|+.........+...++|+|+||+.|...+..... +.+..+++||+||||++...++.. .+..++
T Consensus 110 -~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 110 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp -TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred -CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 6778887776644332223334579999999999998876432 557889999999999998765433 333333
Q ss_pred HHc-------------CCCCeEEEEeec
Q psy3143 263 RLC-------------SRTRQTMLFSAT 277 (337)
Q Consensus 263 ~~~-------------~~~~q~i~~SAT 277 (337)
... .+..++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 222 157899999998
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=229.46 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=136.2
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+...++.++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999999999999999999999986543 23377899999999999999999999998
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHc-
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC- 265 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~- 265 (337)
..++.+..++|+.........+..+++|+|+||++|.+++.......+..+++|||||||++...+ +...+..+....
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 889999999999877665666667789999999999999976433268899999999999988765 333343443332
Q ss_pred ---CCCCeEEEEeecCc
Q psy3143 266 ---SRTRQTMLFSATMT 279 (337)
Q Consensus 266 ---~~~~q~i~~SAT~~ 279 (337)
.+..|+++||||++
T Consensus 402 ~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 402 NSASQLPQILGLTASVG 418 (797)
T ss_dssp TTCCCCCEEEEEESCCC
T ss_pred ccCCCCCeEEEEcCCcc
Confidence 55689999999995
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=238.55 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=155.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
|.+...+++...+|..++|+|.++++.++.+ ++++++||||||||++|.+|+++.+... .++++||++|+++||.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----~~~kavyi~P~raLa~ 986 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----SEGRCVYITPMEALAE 986 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----TTCCEEEECSCHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----CCCEEEEEcChHHHHH
Confidence 6678888999999999999999999999764 6899999999999999999999998654 3568999999999999
Q ss_pred HHHHHHHH-HhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC-CCCCCccEEEEecccccccccH
Q psy3143 177 QVYQVTRQ-LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-FSLSDIEVLVLDEADRMLDEHF 254 (337)
Q Consensus 177 q~~~~~~~-l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~~~~iViDEad~l~~~~~ 254 (337)
|+++.+.. ++...+++|+.+.|+...... ....++|+||||+++..++.+... ..++++++||+||+|.+.+. .
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-r 1062 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-N 1062 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-T
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-C
Confidence 99988875 556678999999988764332 223469999999999877765322 23788999999999988764 2
Q ss_pred HHHH-------HHHHHHcCCCCeEEEEeecCchhHHHHHH-hhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 255 ASQM-------KEIIRLCSRTRQTMLFSATMTDAVNDLVS-VSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 255 ~~~~-------~~i~~~~~~~~q~i~~SAT~~~~~~~~~~-~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
+..+ ..+...++++.|+|+||||+++. ..+.. ..........+ .....+..+..++..+...
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~-~~~~RPvpL~~~i~~~~~~ 1132 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNF-HPNVRPVPLELHIQGFNIS 1132 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEEC-CGGGCSSCEEEEEEEECCC
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEe-CCCCCCCCeEEEEEeccCC
Confidence 3322 33334567789999999999864 33333 22222222222 2334455566665555543
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=227.51 Aligned_cols=185 Identities=21% Similarity=0.261 Sum_probs=151.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+|. |+++|.++++.+..|++++++||||||||++|.++++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 4554 99999999999999999999999999999999999988773 367899999999999999999998764
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
.++.+.|+.... ..++|+|+||++|.+++.+. ...+.++++|||||||+|.+.++...+..++..++..
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 677788876532 35699999999999988764 5568899999999999999988888888899999999
Q ss_pred CeEEEEeecCchhHH--HHHHhhCCCCeEEEeCCCccccCCeeEEEEE
Q psy3143 269 RQTMLFSATMTDAVN--DLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~--~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~ 314 (337)
.|+|+||||+++... ..+......|..+..... .+..+.++++.
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~ 269 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFP 269 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEe
Confidence 999999999987533 444444566777766432 33446666554
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=224.66 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=137.8
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+ +||++|..++|.++.|+ |+.++||+|||++|.+|++...+ .+..++||+||++||.|++.++..+..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------~g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4799 99999999999999999 99999999999999999985443 255799999999999999999999999
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc-cc--------
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML-DE-------- 252 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~-~~-------- 252 (337)
++++++++++||.....+. ...+++|+||||++| .+++..+ ..+.++.+.++||||||.|+ +.
T Consensus 150 ~lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 9999999999998765433 344679999999999 5665432 23568899999999999988 55
Q ss_pred -------cHHHHHHHHHHHcC---------CCCeEE-----------------EEeecCch
Q psy3143 253 -------HFASQMKEIIRLCS---------RTRQTM-----------------LFSATMTD 280 (337)
Q Consensus 253 -------~~~~~~~~i~~~~~---------~~~q~i-----------------~~SAT~~~ 280 (337)
+|...+..|+..++ +.+|++ +||||++.
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 37889999999886 467887 89999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-26 Score=195.36 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=129.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh-
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ- 187 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~- 187 (337)
.....++++|.++++.+..|++++++|+||||||+++.++++..+..... ..+.++++++|+++++.|+.+.+.....
T Consensus 57 ~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 57 RELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34445789999999999999999999999999999999999887754332 2356899999999999999877765432
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc-ccccHH-HHHHHHHHHc
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM-LDEHFA-SQMKEIIRLC 265 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l-~~~~~~-~~~~~i~~~~ 265 (337)
..+..++....... ......++|+|||||+|++++.. .++++++|||||||.+ ++.+|. ..+..+....
T Consensus 136 ~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 136 EPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 23444443332211 11124468999999999999876 3889999999999986 777776 4666666655
Q ss_pred CCCCeEEEEeecCchhHHHHHHhhCCCCe
Q psy3143 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPV 294 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~~~~~~~~~~~~~p~ 294 (337)
++.|+++||||++... +...+...|+
T Consensus 207 -~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 207 -PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp -TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred -CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4789999999999876 4444444443
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=236.40 Aligned_cols=215 Identities=17% Similarity=0.235 Sum_probs=157.9
Q ss_pred CCCCChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC-----CCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPR-----DDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
||..++++|.+++|.++ .++|++++||||||||++|.+++++.+..... ...+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999887 47799999999999999999999999865322 1246799999999999999999999
Q ss_pred HHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC-CCCCCccEEEEecccccccccHHHHHH---
Q psy3143 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-FSLSDIEVLVLDEADRMLDEHFASQMK--- 259 (337)
Q Consensus 184 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~~~~iViDEad~l~~~~~~~~~~--- 259 (337)
+.....+++|+.++|+...... ....++|+||||+++..++.+... ..++.+++|||||+|.+.+ ..+..+.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888889999999998764322 124579999999998665544221 1278899999999997755 3333332
Q ss_pred -HH---HHHcCCCCeEEEEeecCchhHHHHHHhhCCC--CeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHHh
Q psy3143 260 -EI---IRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330 (337)
Q Consensus 260 -~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~l 330 (337)
++ ...++...|+|++|||+|+ ...++ .|+.. +..+.+-.....+..+.|+++.+........+..+..+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA-~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVA-TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHH-HHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHH-HHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHH
Confidence 22 3356788999999999986 34433 34442 22222233445566788888887776555555555443
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=226.43 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=134.5
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
-.|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|++..++.++.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999999999999998875432 22367899999999999999999999988
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHc-
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC- 265 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~- 265 (337)
..++.+..++|+.....+...+...++|+|+||++|.+++.......+.++++|||||||++...+ +...+..+....
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 888999999999876655445555679999999999999976433368899999999999988764 444444444332
Q ss_pred ---CCCCeEEEEeecCc
Q psy3143 266 ---SRTRQTMLFSATMT 279 (337)
Q Consensus 266 ---~~~~q~i~~SAT~~ 279 (337)
.+..|+++||||++
T Consensus 402 ~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 402 NSASQLPQILGLTASVG 418 (936)
T ss_dssp TTCSCCCEEEEEESCCC
T ss_pred ccCCCcCeEEEecCCcc
Confidence 45689999999995
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=218.62 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=114.0
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
+|. +|+++|..++|.++.|+ ++.++||+|||++|++|++...+ .+.+++||+||++||.|++.++..+..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------TGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------TSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 454 89999999999999998 99999999999999999986553 2567999999999999999999999999
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCCCccEEEEecccccc-cc---------
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLSDIEVLVLDEADRML-DE--------- 252 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~~~~iViDEad~l~-~~--------- 252 (337)
+++++++++||..... +....+++|+||||++| .+++..+- .+.++.+.++||||||.|+ +.
T Consensus 142 lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 9999999999987643 33444689999999999 78776532 2557899999999999998 43
Q ss_pred ------cHHHHHHHHHHHcCC
Q psy3143 253 ------HFASQMKEIIRLCSR 267 (337)
Q Consensus 253 ------~~~~~~~~i~~~~~~ 267 (337)
+|...+..|+..++.
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp C--------------------
T ss_pred CCccchhHHHHHHHHHHhchh
Confidence 366778888877764
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=225.28 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=133.8
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|.++++.++.|++++++||||||||++|++++...+. .++++||++||++|+.|+++.+..+.. ++.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~ 110 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETFD--DVN 110 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC----CC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCe
Confidence 479999999999999999999999999999999998887763 367899999999999999999887543 578
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
++.++|+... ...++|+|+||++|.+++... ...+.++++|||||||++.+.++...+..++..++...|+|
T Consensus 111 v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 111 IGLITGDVQI-------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp EEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred EEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 8888887653 244699999999999988764 45578999999999999999988888889999999999999
Q ss_pred EEeecCchhH
Q psy3143 273 LFSATMTDAV 282 (337)
Q Consensus 273 ~~SAT~~~~~ 282 (337)
++|||+++..
T Consensus 183 lLSAT~~n~~ 192 (997)
T 4a4z_A 183 LLSATVPNTY 192 (997)
T ss_dssp EEECCCTTHH
T ss_pred EEcCCCCChH
Confidence 9999998664
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=212.88 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=138.8
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+ +|+++|..++|.++.|+ |+.++||+|||++|.+|++...+ .+..|+||+||++||.|+..++..+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------AGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------TTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------hCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4688 99999999999999998 99999999999999999975543 245799999999999999999999999
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc-c---------
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML-D--------- 251 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~-~--------- 251 (337)
++++++++++||.+..... ...+++|+||||++| .+++..+ ..+.++.+.++||||||.|+ +
T Consensus 178 ~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 9999999999998754333 334579999999999 7777653 13567899999999999998 4
Q ss_pred ------ccHHHHHHHHHHHcC---------CCCeEE-----------------EEeecCch
Q psy3143 252 ------EHFASQMKEIIRLCS---------RTRQTM-----------------LFSATMTD 280 (337)
Q Consensus 252 ------~~~~~~~~~i~~~~~---------~~~q~i-----------------~~SAT~~~ 280 (337)
.+|...+..|+..++ +.+|++ +||||.+.
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 358899999999997 678998 99999875
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=216.58 Aligned_cols=218 Identities=21% Similarity=0.200 Sum_probs=158.3
Q ss_pred CCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhC----CC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 96 MNLSRPLLKAIGA-LNYIYPTPIQAATIPVALL----GR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 96 ~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~----~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
++++....+.+.. ++|. ||++|.++++.++. ++ +++++++||+|||++|+++++..+. .+.+++|+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvl 658 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVL 658 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEE
Confidence 3466677777754 4664 79999999999886 66 9999999999999999999887763 35689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---Hh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEe
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---LR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViD 244 (337)
+||++||.|+++.+..+....++++..+.+.......... +. ..++|+||||+.|. . .+.++++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C--CccccccceEEEe
Confidence 9999999999999998877778889888887665544322 22 35899999997653 2 4568999999999
Q ss_pred cccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHH
Q psy3143 245 EADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 245 Ead~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~ 324 (337)
|||++. .....+++.+....++++||||+.+....+....+.++..+...+. ....+.+++..... ..-+.
T Consensus 733 EaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~~--~~i~~ 803 (1151)
T 2eyq_A 733 EEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYDS--MVVRE 803 (1151)
T ss_dssp SGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECCH--HHHHH
T ss_pred chHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCCH--HHHHH
Confidence 999953 2334455556678899999999988888877777777666554332 22345554443322 12333
Q ss_pred HHHHHhhhcCC
Q psy3143 325 NVLGLMLLREN 335 (337)
Q Consensus 325 ~~L~~ll~~~~ 335 (337)
.++..+.+.++
T Consensus 804 ~il~~l~~g~q 814 (1151)
T 2eyq_A 804 AILREILRGGQ 814 (1151)
T ss_dssp HHHHHHTTTCE
T ss_pred HHHHHHhcCCe
Confidence 44444444443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=209.46 Aligned_cols=167 Identities=22% Similarity=0.239 Sum_probs=131.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+.+.+..++| .||++|.++++.++.+ ++++++|+||||||++|++|++..+. .+.+++|++||++||
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------~g~qvlvlaPtr~La 430 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------AGFQTAFMVPTSILA 430 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------HTSCEEEECSCHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHH
Confidence 3344567888 8999999999998865 59999999999999999999999874 357899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---H-hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---L-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
.|+++.+..+....++++..++|+......... + ...++|+||||+.+.+ .+.+.++++||+||+|++..
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhH
Confidence 999999999988888999999999876654332 2 2358999999987754 45688999999999999632
Q ss_pred ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 252 EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 252 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.. ...+.......++++||||+.+....+.
T Consensus 505 ~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~ 534 (780)
T 1gm5_A 505 KQ-----REALMNKGKMVDTLVMSATPIPRSMALA 534 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCCHHHHHH
T ss_pred HH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH
Confidence 21 1122223356899999999877655544
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=196.91 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=135.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+. ..+.++|||+|+++|+.|+.+.+..+.......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 5899999999999998 9999999999999999999988774 236689999999999999999999887544558
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
+..++|+.........+ ..++|+|+||+.|...+... .+.+..+++||+||||++........+...+....+..+++
T Consensus 83 v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 88888888766544433 34699999999999988763 56788999999999999886654444555555556788999
Q ss_pred EEeecCchh---HHHHHH
Q psy3143 273 LFSATMTDA---VNDLVS 287 (337)
Q Consensus 273 ~~SAT~~~~---~~~~~~ 287 (337)
+||||+... +..++.
T Consensus 161 ~lTaTp~~~~~~~~~l~~ 178 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVIN 178 (494)
T ss_dssp EEESCSCSSHHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHHH
Confidence 999999844 444444
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-25 Score=219.36 Aligned_cols=168 Identities=24% Similarity=0.254 Sum_probs=127.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-HHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-YQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~l~~~~~ 190 (337)
..|+++|.++++.++.|+++++++|||+|||++|++|+++.+........++++|||+|+++|+.|+ .+.+..++.. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 3689999999999999999999999999999999999998876433222347899999999999999 9999988755 4
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhc-----CCCCCCCCccEEEEeccccccccc-HHHHHHHHHHH
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN-----TPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRL 264 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-----~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~ 264 (337)
+.+..++|+.........+...++|+|+||++|.+.+.+ ...+.+..+++|||||||++...+ |...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 788888888765444444556789999999999988842 224567899999999999986543 33333322221
Q ss_pred ----c---------CCCCeEEEEeecCch
Q psy3143 265 ----C---------SRTRQTMLFSATMTD 280 (337)
Q Consensus 265 ----~---------~~~~q~i~~SAT~~~ 280 (337)
. .+..|+++||||++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhcccccccccccCCCCCEEEEecccccc
Confidence 1 156799999999997
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=190.60 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=124.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.++++.++.+++.++++|||+|||++++.++...+.. .++++||++||++|+.|+.+.+..+......
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 37999999999999988899999999999999998887776632 2348999999999999999999998766667
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.+..+.++..... ......+|+|+||+.+.... ...+..+++||+||||++.. ..+..++..+....++
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 187 MIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (282)
T ss_dssp GEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEE
T ss_pred eEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeE
Confidence 7777777754321 22245699999999875432 23467899999999999874 3566677777778999
Q ss_pred EEEeecCchhH
Q psy3143 272 MLFSATMTDAV 282 (337)
Q Consensus 272 i~~SAT~~~~~ 282 (337)
++||||+++..
T Consensus 256 l~lSATp~~~~ 266 (282)
T 1rif_A 256 FGLSGSLRDGK 266 (282)
T ss_dssp EEECSSCCTTS
T ss_pred EEEeCCCCCcc
Confidence 99999998663
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-23 Score=195.99 Aligned_cols=156 Identities=18% Similarity=0.167 Sum_probs=127.9
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
...|+++|.++++.++.+++++++++||+|||++|+.++...+.. .++++|||+||++|+.|+.+.+..+..+.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 347999999999999999999999999999999999988887642 234899999999999999999998876667
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
..+..++|+.....+ ....++|+|+||+.|... ....+.++++|||||||++.. ..+..+++.+....+
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 788888887654332 345679999999976542 234577899999999999875 345566777777889
Q ss_pred EEEEeecCchhH
Q psy3143 271 TMLFSATMTDAV 282 (337)
Q Consensus 271 ~i~~SAT~~~~~ 282 (337)
+++||||+++..
T Consensus 255 ~l~lSATp~~~~ 266 (510)
T 2oca_A 255 KFGLSGSLRDGK 266 (510)
T ss_dssp EEEEESCGGGCS
T ss_pred EEEEEeCCCCCc
Confidence 999999998764
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-23 Score=204.54 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=131.0
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+++++.+++++... ...|+|+|+.+++.++.|++++++||||||||++|++|+++.+.. .++++||++|||+||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----~~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----RRLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEcChHHHH
Confidence 55777766666543 478899998899999999999999999999999999999998864 357899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
.|+++.+.. ..+....+... .....+..+.++|.+.+...+.. ...+.++++|||||||++ +.+|.
T Consensus 229 ~Qi~~~l~~------~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 229 AEMEEALRG------LPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHTTT------SCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHhcC------CceeEecccce-----eccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-CccHH
Confidence 999887762 33332111100 01112336778888888877766 345899999999999998 77787
Q ss_pred HHHHHHHHHcC-CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 256 SQMKEIIRLCS-RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 256 ~~~~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
..+..+...++ ...|+++||||++..+..+.. .++..+.+.
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~ 336 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIE 336 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEE
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeec
Confidence 78888877764 679999999999987554332 356555554
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=192.05 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=121.2
Q ss_pred CCCCChHHHHHHHHHHhCCCCE-EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDI-CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~-lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
|+..|+++|. ++|.++.++++ +++||||||||++|++|++..+.. .++++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----~~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----RRLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----cCCcEEEECCCHHHHHHHHHHhc-----
Confidence 6788999985 79999999987 899999999999999999987653 35789999999999999988774
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHH-HcCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR-LCSR 267 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~-~~~~ 267 (337)
+..+....+.... ....+..|.++|++.|...+.+ ...+.++++|||||||++ +..+...+..+.. ...+
T Consensus 70 -g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp -TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred -Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 2333322221110 1123457999999999988876 356889999999999987 4444443333332 3456
Q ss_pred CCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 268 ~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
..|+++||||++..+.. .+..++..+.+
T Consensus 141 ~~~~i~~SAT~~~~~~~---~~~~~~~~~~~ 168 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDP---FPQSNSPIEDI 168 (451)
T ss_dssp SCEEEEECSSCTTCCCS---SCCCSSCEEEE
T ss_pred CceEEEEccCCCccchh---hhcCCCceEec
Confidence 79999999999875543 23345655554
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=191.45 Aligned_cols=210 Identities=17% Similarity=0.144 Sum_probs=145.1
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..+|.++++++.+.+.+...+ ..|+++|+.+|+.++.+ ++++++||||||||++ +|++..... ...+.+.+++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~-~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDE-MPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHH-CGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhc-cccCCCceEEec
Confidence 467999999999999999888 78999999999988755 5799999999999994 444421111 111125679999
Q ss_pred cCCHHHHHHHHHHHHHHh-hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLA-QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+|+|+|+.|+...+.... ...+..++....... ......+|+|+|||++.+.+.. ...+.++++|||||+|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 999999999987665432 222333332222111 1124568999999999998876 3458999999999999
Q ss_pred c-ccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 248 R-MLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 248 ~-l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
. +++.. +...+..+.... +..|+++||||++.. . +..++.++..+.+.... ..+.++|+.+...
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~ 284 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGRT---YPVELYYTPEFQR 284 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCCC---CCEEEECCSSCCS
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--H-HHHHhcCCCcccccCcc---cceEEEEecCCch
Confidence 5 66543 334455555443 578999999999643 3 33456666666664432 4577777765543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=188.63 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=113.5
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+ +|+++|..++|.++.|+ |+.+.||+|||++|.+|++...+ .+..++|++||++||.|.+.++..+..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------TGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------TCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3688 99999999999999998 99999999999999999965443 245799999999999999999999999
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCC---CccEEEEecccccc
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLS---DIEVLVLDEADRML 250 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~---~~~~iViDEad~l~ 250 (337)
++++++++++||...... ....+++|+||||++| .+++...- .+.++ .+.++||||||.|+
T Consensus 146 ~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999875433 3345689999999999 78887642 34577 89999999999876
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=182.72 Aligned_cols=137 Identities=22% Similarity=0.234 Sum_probs=113.4
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+.+..+ ++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~ 158 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GE 158 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGG----CG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhC----CC
Confidence 36899999999999999999999999999999999988764 457999999999999998888873 57
Q ss_pred E-EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 192 E-VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 192 ~-v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
. ++.+.|+... ..+|+|+||+.+...+... ...+++|||||||++...+|.. +...+ ...+
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 7 8888777542 4699999999998766431 2458999999999998887754 34444 3678
Q ss_pred EEEEeecCc
Q psy3143 271 TMLFSATMT 279 (337)
Q Consensus 271 ~i~~SAT~~ 279 (337)
++++|||+.
T Consensus 221 ~l~lSATp~ 229 (472)
T 2fwr_A 221 RLGLTATFE 229 (472)
T ss_dssp EEEEESCCC
T ss_pred EEEEecCcc
Confidence 999999997
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-22 Score=192.24 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v 193 (337)
+..+|..+++.+..+++++++||||||||++|++|+++. +.++||++|||+||.|+++.+.+.. +..+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------g~~vLVl~PTReLA~Qia~~l~~~~---g~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKAH---GIDP 285 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------TCCEEEEESCHHHHHHHHHHHHHHH---SCCC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------CCeEEEEcchHHHHHHHHHHHHHHh---CCCe
Confidence 445566666666678899999999999999999998762 4589999999999999988665543 4556
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe--E
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ--T 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q--~ 271 (337)
...+|+.. ...+++|+|+||++|+ . .+.+.++++++||||||| +++.+|...+..+++.++...| +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 66777654 3566899999999984 2 346778899999999996 5678888889999999887766 7
Q ss_pred EEEeecCchh
Q psy3143 272 MLFSATMTDA 281 (337)
Q Consensus 272 i~~SAT~~~~ 281 (337)
++||||++..
T Consensus 354 il~SAT~~~~ 363 (666)
T 3o8b_A 354 VLATATPPGS 363 (666)
T ss_dssp EEEESSCTTC
T ss_pred EEECCCCCcc
Confidence 7889999985
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=161.65 Aligned_cols=139 Identities=22% Similarity=0.237 Sum_probs=110.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.+++..++.++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+..+ ++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~----~~ 158 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GE 158 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG----CG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhC----CC
Confidence 46899999999999999999999999999999988776542 457999999999999988888763 56
Q ss_pred E-EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 192 E-VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 192 ~-v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
. +..+.|+.. ...+|+|+|++.+...... ....+++|||||||++....|.. +...++ ..+
T Consensus 159 ~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~ 220 (237)
T 2fz4_A 159 EYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APF 220 (237)
T ss_dssp GGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSE
T ss_pred CeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhcc-CCE
Confidence 6 777777654 2469999999998876643 13458999999999998776643 444444 678
Q ss_pred EEEEeecCchh
Q psy3143 271 TMLFSATMTDA 281 (337)
Q Consensus 271 ~i~~SAT~~~~ 281 (337)
++++|||++..
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 89999998753
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-21 Score=186.76 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=110.9
Q ss_pred HHHhCCCC-----CChHHHH-----HHHHHHh------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 105 AIGALNYI-----YPTPIQA-----ATIPVAL------LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 105 ~l~~~~~~-----~p~~~Q~-----~~i~~~~------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
++..+||. .|+++|+ ++||.++ .+++++++||||||||++|++|+++.+.. .++++||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----~~~~~lil 276 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----KRLRTAVL 276 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----TTCCEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEE
Confidence 44556666 8999999 9999888 89999999999999999999999988753 35789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++||.|+++.+..+. +. ...+... ..-..+.-+-+.+.+.+...+.. ...++++++|||||||+
T Consensus 277 aPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHF 343 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTC
T ss_pred ccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcc
Confidence 999999999998877442 21 1111000 00011112344455555544444 34689999999999999
Q ss_pred cccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~ 286 (337)
+ +..+...+..+...+ +...|+++||||+++.+..+.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~ 381 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFP 381 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhc
Confidence 8 333334444444444 367899999999998765443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=166.55 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|++++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----
Confidence 37899999999999999999999966642 35689999999999999887765 3455544443211
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
.-..+.-+.++|.+.+...+.. ...++++++|||||||++ +.++......+.... +...|+++||||+++.+..
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred -cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122346778899988777666 455899999999999997 555544544444443 5689999999999986544
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=170.51 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=102.3
Q ss_pred HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHH
Q psy3143 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~ 203 (337)
.+..+++++++||||||||++|++|+++.+.. .++++||++|||+||.|+++.+. +..+....+.....
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE 85 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC
Confidence 45678899999999999999999999988753 35789999999999999988876 23333222211100
Q ss_pred HHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc-----ccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM-----LDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 204 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l-----~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
-..+.-+.++|.+.+...+.. ...++++++|||||||++ +..+|...+ ......|+++||||+
T Consensus 86 -----~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~-----~~~~~~~~il~SAT~ 153 (459)
T 2z83_A 86 -----HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATK-----VELGEAAAIFMTATP 153 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH-----HHTTSCEEEEECSSC
T ss_pred -----CCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHH-----hccCCccEEEEEcCC
Confidence 122336788999988877766 356899999999999984 333332221 124678999999999
Q ss_pred chhHHHHHHhhCCCCeEE
Q psy3143 279 TDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 279 ~~~~~~~~~~~~~~p~~i 296 (337)
+..+..+... ..|+.+
T Consensus 154 ~~~~~~~~~~--~~pi~~ 169 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHD 169 (459)
T ss_dssp TTCCCSSCCC--SSCEEE
T ss_pred CcchhhhccC--CCCeEE
Confidence 9875443322 345544
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=174.82 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCChHHHHHHHHHHhC----C-CCEEEEcCCCCchhHHhHHHHHHHhhcCC----CCCCCeeEEEEcCCHHHHHHHH-HH
Q psy3143 112 IYPTPIQAATIPVALL----G-RDICGCAATGTGKTAAFMLPILERLLYKP----RDDQNTRVLVLVPTRELGVQVY-QV 181 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~----~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~~~~lil~Pt~~La~q~~-~~ 181 (337)
..|+++|.++++.++. + ++++++++||+|||++++.. +..++... ....++++|||+||++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999998875 4 56899999999999996554 44443322 1124678999999999999988 66
Q ss_pred HHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC---CCCCCCCccEEEEecccccccccHHHHH
Q psy3143 182 TRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT---PSFSLSDIEVLVLDEADRMLDEHFASQM 258 (337)
Q Consensus 182 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~~~~iViDEad~l~~~~~~~~~ 258 (337)
+..++ ..+..+.++ ......+|+|+||++|...+... ..+....+++||+||||++.... ...+
T Consensus 256 ~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 66543 233333322 23345799999999998875421 13446779999999999987543 2455
Q ss_pred HHHHHHcCCCCeEEEEeecCchhH
Q psy3143 259 KEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 259 ~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
..++..++ ..++++||||+....
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~ 345 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLRED 345 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTT
T ss_pred HHHHHhCC-cceEEEecccccccc
Confidence 66666665 468999999987543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=176.79 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=114.9
Q ss_pred CCChHHHHHHHHHHhC--------------CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 112 IYPTPIQAATIPVALL--------------GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
..|+++|..|++.++. +++.+++++||||||+++ ++++..+. .. ....++|||+|+++|+.|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~-~~--~~~~rvLvlvpr~eL~~Q 345 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT-EL--DFIDKVFFVVDRKDLDYQ 345 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT-TC--TTCCEEEEEECGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH-hc--CCCceEEEEeCcHHHHHH
Confidence 3599999999998875 368999999999999997 66665543 21 224689999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEecccccccccHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~~~~~ 255 (337)
+...+..++.. .+.++.+.......+. ..++|+|+||++|..++.....+ .+..+.+||+||||++...+
T Consensus 346 ~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~-- 417 (1038)
T 2w00_A 346 TMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE-- 417 (1038)
T ss_dssp HHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH--
T ss_pred HHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchH--
Confidence 99988887643 1234444444444443 56799999999999887653222 35678999999999976433
Q ss_pred HHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 256 SQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 256 ~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
....|...++ +.++++||||+..
T Consensus 418 -~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 418 -AQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp -HHHHHHHHCS-SEEEEEEESSCCC
T ss_pred -HHHHHHHhCC-cccEEEEeCCccc
Confidence 3455666665 4799999999874
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=162.74 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=96.2
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
++.|++++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.+..+ .+....+...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~--- 70 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS--- 70 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---
Confidence 5689999999999999999999999997753 2568999999999999999887743 2222211100
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcC-------CCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEee
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNT-------PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSA 276 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SA 276 (337)
.|+||++++.++... ....++++++||+||||++ +.++...+..+...+ +...|+++|||
T Consensus 71 -----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 71 -----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp -----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred -----------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 366775554322210 1345889999999999998 444444444443333 46799999999
Q ss_pred cCchhHHHHH
Q psy3143 277 TMTDAVNDLV 286 (337)
Q Consensus 277 T~~~~~~~~~ 286 (337)
|+++.+..+.
T Consensus 139 T~~~~~~~~~ 148 (440)
T 1yks_A 139 TPPGTSDEFP 148 (440)
T ss_dssp SCTTCCCSSC
T ss_pred CCCchhhhhh
Confidence 9998765443
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=159.15 Aligned_cols=129 Identities=18% Similarity=0.075 Sum_probs=101.3
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPV----ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|++.|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.+.+..+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------~~~v~i~~pt~~l~~q~~~~~~~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------KPKVLFVVRTHNEFYPIYRDLTKIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------CSEEEEEESSGGGHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------CCeEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 589999997764 4578999999999999999999999972 578999999999999999999988777
Q ss_pred cCcEEEEEeCCccH---------------------------------HHHH------------------HHHhcCCCEEE
Q psy3143 189 TSVEVALSVGGLEV---------------------------------KVQE------------------SVLRKCPDIVI 217 (337)
Q Consensus 189 ~~~~v~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~Ilv 217 (337)
.++++..+.|+.+. .... +.....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 77888877664321 0111 12224579999
Q ss_pred ECcHHHHHHHhcCCCCCC-CCccEEEEeccccccc
Q psy3143 218 ATPGRLLDHLHNTPSFSL-SDIEVLVLDEADRMLD 251 (337)
Q Consensus 218 ~Tp~~l~~~l~~~~~~~l-~~~~~iViDEad~l~~ 251 (337)
+|++.|++...+.. +.+ ....++||||||.|.+
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 99999998765432 322 4678999999999886
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=161.86 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=101.3
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccH
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~ 202 (337)
...+.+++++++||||||||+ +++..+... .+++|++|||+||.|+++.+..+ ++.+..+.|+...
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHS------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 345688999999999999998 333444322 24599999999999999998875 5778888887553
Q ss_pred HHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC-CCCeEEEEeecCchh
Q psy3143 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQTMLFSATMTDA 281 (337)
Q Consensus 203 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~ 281 (337)
.. .......+++++|++.+. ....+++|||||||++++.+|...+..++..++ ...|++++|||. +.
T Consensus 216 iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~ 283 (677)
T 3rc3_A 216 TV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DL 283 (677)
T ss_dssp CC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HH
T ss_pred Ee--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HH
Confidence 00 000112467777753221 246789999999999999999988888888877 678999999995 34
Q ss_pred HHHHHHh
Q psy3143 282 VNDLVSV 288 (337)
Q Consensus 282 ~~~~~~~ 288 (337)
+..+...
T Consensus 284 i~~l~~~ 290 (677)
T 3rc3_A 284 VMELMYT 290 (677)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=146.31 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|+|+|.+++..+ ..+++++++.+||+|||++++..+.... .. ....++|||+|+ .|+.|+.+.+.++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~---~~~~~~LIv~P~-~l~~qw~~e~~~~~~- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KE---NELTPSLVICPL-SVLKNWEEELSKFAP- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HT---TCCSSEEEEECS-TTHHHHHHHHHHHCT-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hc---CCCCCEEEEccH-HHHHHHHHHHHHHCC-
Confidence 5899999999876 4678999999999999999765444433 22 234579999995 588999988888764
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
+.++..+.|+... .....++|+|+|++.+..... +....+++||+||||++-..+. .....+..++ .
T Consensus 111 -~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 111 -HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp -TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred -CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 4566666665421 122446999999999876432 2345689999999999865541 2333334443 4
Q ss_pred CeEEEEeecCch
Q psy3143 269 RQTMLFSATMTD 280 (337)
Q Consensus 269 ~q~i~~SAT~~~ 280 (337)
.+.+++|||+..
T Consensus 178 ~~~l~LTaTP~~ 189 (500)
T 1z63_A 178 KYRIALTGTPIE 189 (500)
T ss_dssp EEEEEECSSCST
T ss_pred CcEEEEecCCCC
Confidence 567999999853
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=146.93 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCCCChHHHHHHHH----HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 109 LNYIYPTPIQAATIP----VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|| .|+++|.+++. .+..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 355 78999999865 45688999999999999999999998764 56899999999999999987776
Q ss_pred HhhccCcEEEEEeCCccH--------HH---------------------------------------HHHHHhcCCCEEE
Q psy3143 185 LAQFTSVEVALSVGGLEV--------KV---------------------------------------QESVLRKCPDIVI 217 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~--------~~---------------------------------------~~~~~~~~~~Ilv 217 (337)
+ ++++..+.|.... .. ..+.....++|+|
T Consensus 74 l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 74 L----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp G----TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred c----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 4 3444433332210 00 0001123469999
Q ss_pred ECcHHHHHHHhcCCCC------CCCCccEEEEecccccc
Q psy3143 218 ATPGRLLDHLHNTPSF------SLSDIEVLVLDEADRML 250 (337)
Q Consensus 218 ~Tp~~l~~~l~~~~~~------~l~~~~~iViDEad~l~ 250 (337)
+|++.|++........ .+....++||||||.|.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999998754331111 24667899999999984
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=155.55 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=106.6
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 112 IYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
..|+|+|..++..++.. ..++++++||+|||++++..+...+.. +...++|||+|+ .|+.|+...+....
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----g~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----GAAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----SSCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 35899999999988764 489999999999999998777666532 124479999999 99999888776544
Q ss_pred CcEEEEEeCCccHHHHHH--HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHc
Q psy3143 190 SVEVALSVGGLEVKVQES--VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLC 265 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~--~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~ 265 (337)
++.+..+.+......... ......+|+|+|++.+.........+....+++|||||||++...+.. .....+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 455555544322211111 111246999999998865322111233567899999999998654321 1122233333
Q ss_pred CCCCeEEEEeecCc
Q psy3143 266 SRTRQTMLFSATMT 279 (337)
Q Consensus 266 ~~~~q~i~~SAT~~ 279 (337)
....+++++|||+.
T Consensus 304 ~~~~~~L~LTATPi 317 (968)
T 3dmq_A 304 EHVPGVLLLTATPE 317 (968)
T ss_dssp TTCSSEEESCSSCS
T ss_pred hcCCcEEEEEcCCc
Confidence 34567899999984
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-13 Score=133.12 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=108.3
Q ss_pred CChHHHHHHHHHHh---------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-CCeeEEEEcCCHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVAL---------LGRDICGCAATGTGKTAAFMLPILERLLYKPRDD-QNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.+.|+|..++..+. .++..|++.+||+|||++++..+...+...+... ...++|||+|+ .|+.|+.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 57899999998874 4567999999999999998777666554332211 23569999997 7888888888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHH---HHHh-----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQE---SVLR-----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~---~~~~-----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~ 254 (337)
.++... .+.+..+.++....... .... ..++|+|+|++.+..... .+....+++||+||||++-+...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChhh
Confidence 887654 45555666655432211 1111 136899999999886542 33445789999999999865431
Q ss_pred HHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 255 ASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 255 ~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.....+..+. ....+++|||+-.
T Consensus 210 --~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 210 --QTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSG
T ss_pred --HHHHHHHhcc-cCcEEEEecCccc
Confidence 2222233333 4467899999743
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=138.40 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.++++|..++..+. .++++|++.+||+|||++++..+...+.... ..+.+||||| ..|+.|+.+.+..++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~---~~~~~LIV~P-~sll~qW~~E~~~~~p- 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR---QNGPHIIVVP-LSTMPAWLDTFEKWAP- 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS---CCSCEEEECC-TTTHHHHHHHHHHHST-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC---CCCCEEEEEC-chHHHHHHHHHHHHCC-
Confidence 56899999998765 7889999999999999998766655443222 2456999999 6778888888877653
Q ss_pred cCcEEEEEeCCccHHHHHHH------------HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESV------------LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
++.+..++|+......... ....++|+|+|++.+...... +....+++|||||||++-..+ .
T Consensus 311 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s 384 (800)
T 3mwy_W 311 -DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--S 384 (800)
T ss_dssp -TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--S
T ss_pred -CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--h
Confidence 5677777776654433222 123468999999999775432 222358899999999985432 1
Q ss_pred HHHHHHHHcCCCCeEEEEeecC
Q psy3143 257 QMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
.....+..++ ....+++|||+
T Consensus 385 ~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 385 SLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp HHHHHHTTSE-EEEEEEECSCC
T ss_pred HHHHHHHHhh-hccEEEeeCCc
Confidence 2233333333 34568899997
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-11 Score=116.42 Aligned_cols=130 Identities=20% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.-+|+++|....-.+..|+ |....||+|||+++.+|++-..+ .|..+.|++||+.||.|-+.++..+..++|
T Consensus 73 g~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------~G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 73 GMRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------IGKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp SCCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------cCCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 3468999998888888777 89999999999999999975543 366799999999999999999999999999
Q ss_pred cEEEEEeCC--------------------------------------------------ccHHHHHHHHhcCCCEEEECc
Q psy3143 191 VEVALSVGG--------------------------------------------------LEVKVQESVLRKCPDIVIATP 220 (337)
Q Consensus 191 ~~v~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ilv~Tp 220 (337)
+.++++... ........ ...+||.+||.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEEccC
Confidence 999998872 11111111 22369999999
Q ss_pred HHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 221 GRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 221 ~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
.-+ .++|..+ .......+.|.||||+|.++
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 765 3444322 12235778999999999865
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=114.93 Aligned_cols=145 Identities=21% Similarity=0.265 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchh--HHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKT--AAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT--~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
++.|..+++.++.++.++++|++|+||| ++++++.+..+. ...+.++++++||..+|.++.+.+.......++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~----~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA----DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC----SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh----hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999 556777766542 1235689999999999999988877665544322
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
.... .+... .. ..-..++-.+|+.. . +... ......+++||||||+ |++ ...+..++..++...|+|
T Consensus 227 ~~~~-~~~~~--~~---~Tih~ll~~~~~~~-~-~~~~-~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQK-KRIPE--DA---STLHRLLGAQPGSQ-R-LRHH-AGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCC-CSCSC--CC---BTTTSCC-------------C-TTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred HHHH-hccch--hh---hhhHhhhccCCCch-H-HHhc-cCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 1100 00000 00 00011222233221 1 1111 1122378999999999 554 456777888888899999
Q ss_pred EEee
Q psy3143 273 LFSA 276 (337)
Q Consensus 273 ~~SA 276 (337)
++.=
T Consensus 294 LvGD 297 (608)
T 1w36_D 294 FLGD 297 (608)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9874
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-11 Score=114.56 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=69.9
Q ss_pred CChHHHHHHHH----HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIP----VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|++.|.+.+. .+..|+++++.||||+|||++|++|++..+.. .+.+++|++||++++.|+.+.+..+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----~~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----RKLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----HTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----cCCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 57899988875 45689999999999999999999999998742 2568999999999999999999998887
Q ss_pred cCcEEEEEeCCc
Q psy3143 189 TSVEVALSVGGL 200 (337)
Q Consensus 189 ~~~~v~~~~~~~ 200 (337)
.++++..+.|+.
T Consensus 78 ~~~~~~~l~gr~ 89 (620)
T 4a15_A 78 MKIRAIPMQGRV 89 (620)
T ss_dssp SCCCEEECCCHH
T ss_pred cCeEEEEEECCC
Confidence 778877776644
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.1e-07 Score=83.70 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=79.1
Q ss_pred HhCCCCCChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 107 GALNYIYPTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 107 ~~~~~~~p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
.-+.|..+++-|..++..++.. +.++|.|+.|||||... ..++..+.... ..++++++||...|..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~----~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG----ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT----CCCEEEEESSHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC----CceEEEecCcHHHHHHHHhh
Confidence 3356677899999999876532 38999999999999764 33444443221 23699999999887766544
Q ss_pred HHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHH
Q psy3143 182 TRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261 (337)
Q Consensus 182 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i 261 (337)
+ +..+..++ ..+.. -..+.+... .+.......+..+++|||||++.+. ...+..+
T Consensus 94 ~-------~~~~~T~h---------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l 148 (459)
T 3upu_A 94 S-------GKEASTIH---------SILKI----NPVTYEENV-LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKIL 148 (459)
T ss_dssp H-------SSCEEEHH---------HHHTE----EEEECSSCE-EEEECSCCCCSSCSEEEESCGGGCC----HHHHHHH
T ss_pred h-------ccchhhHH---------HHhcc----Ccccccccc-hhcccccccccCCCEEEEECchhCC----HHHHHHH
Confidence 3 11111111 11110 000000000 0000112346678999999999654 2344555
Q ss_pred HHHcCCCCeEEEEe
Q psy3143 262 IRLCSRTRQTMLFS 275 (337)
Q Consensus 262 ~~~~~~~~q~i~~S 275 (337)
+..++...+++++.
T Consensus 149 ~~~~~~~~~~~~vG 162 (459)
T 3upu_A 149 LSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HHhccCCCEEEEEC
Confidence 56666666666665
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.4e-07 Score=86.09 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.+++.|..++..++.++.+++.|++|+|||.... .++..+.. .+.++++++||...+..+...+. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-----~g~~Vl~~ApT~~Aa~~L~e~~~-------~~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES-----LGLEVGLCAPTGKAARRLGEVTG-------RT 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH-----TTCCEEEEESSHHHHHHHHHHHT-------SC
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh-----cCCeEEEecCcHHHHHHhHhhhc-------cc
Confidence 4689999999999999999999999999997643 23333321 35679999999998877654321 11
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
...+ .+.+...+ + .+.. .......+++||||||+++. ...+..+++.++...+++
T Consensus 256 a~Ti---------h~ll~~~~-----~------~~~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ASTV---------HRLLGYGP-----Q------GFRH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEEH---------HHHTTEET-----T------EESC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred HHHH---------HHHHcCCc-----c------hhhh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 1111 11111000 0 0011 11224467999999999754 235556677777777777
Q ss_pred EEe
Q psy3143 273 LFS 275 (337)
Q Consensus 273 ~~S 275 (337)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-06 Score=82.86 Aligned_cols=70 Identities=23% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
...+++.|..|+..++.+.-++|.||+|+|||....- ++..+... .+.++++++||...+.++...+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS----SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc----CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3457899999999998888889999999999987544 33344321 3568999999999999988877653
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-06 Score=83.77 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
+..+++.|..|+..++.+.-++|.||+|+|||....-.+ ..+... .+.++|+++||...+.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 345789999999999887778999999999998754333 333211 2568999999999999998888764
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=98.38 E-value=7.1e-06 Score=82.14 Aligned_cols=70 Identities=23% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
...+++.|..|+..++.+.-++|.||+|+|||....- ++..+... .+.++++++||...+.++...+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT----CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc----CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3457899999999998888889999999999987543 34444321 3568999999999999988777653
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=84.97 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.+++-|.+|+..++..++ .+|+||+|+|||...+-.+.+.+. .+.++|+++||...+.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999887764 689999999999876554444442 3568999999999999988877653
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00017 Score=65.82 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.++++|...+..+...+-+++..+-+.|||.+....++..+... .+..++++.||+..|..++..+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67999999998765556789999999999998777666554432 3567999999999999888888776654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00095 Score=64.74 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
.++++|...+..+...+-+++.++-|+|||.+....++..+... ++.+++++.|++..|..++..++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~----~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS----SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 47999999998775567899999999999998776655555432 24589999999999999988888776544
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00017 Score=70.92 Aligned_cols=68 Identities=31% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCCChHHHHHHHHHHh----CCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVAL----LGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+| .|+..|.+++..+. .|. ..++.|.||||||+.+.- ++..+ +..+|||+|+..+|.|++..++.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--------~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--------GRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------CCCEEEEecCHHHHHHHHHHHHH
Confidence 45 78999998887654 333 467899999999987653 33333 22499999999999999999998
Q ss_pred Hhh
Q psy3143 185 LAQ 187 (337)
Q Consensus 185 l~~ 187 (337)
+..
T Consensus 76 ~~~ 78 (664)
T 1c4o_A 76 LFP 78 (664)
T ss_dssp HCT
T ss_pred HCC
Confidence 863
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00049 Score=63.66 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=54.0
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-.++.|+.|+|||.... +.+. ..+.+|++||++++..+.+.+.... ..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~----~~----------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVN-------FEEDLILVPGRQAAEMIRRRANASG----II----------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCC-------TTTCEEEESCHHHHHHHHHHHTTTS----CC-----------------
T ss_pred EEEEEcCCCCCHHHHHH----HHhc-------cCCeEEEeCCHHHHHHHHHHhhhcC----cc-----------------
Confidence 35789999999998642 2221 1357999999999988776654221 00
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
.....-|.|-+.++. +........+++||||||- |+..++..
T Consensus 211 -~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~s-m~~~~~l~ 252 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGL-MLHTGCVN 252 (446)
T ss_dssp -CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGG-GSCHHHHH
T ss_pred -ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcc-cCCHHHHH
Confidence 001233566554432 3222223358999999998 44555433
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00057 Score=55.32 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.4
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|+.++++||+|+|||.....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999986543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00016 Score=60.88 Aligned_cols=114 Identities=14% Similarity=0.159 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|.-++++|++|+|||++.+-.+..... .+.+++++.|...-- . ...+....++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~r---~--~~~i~srlG~~-------------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDTR---S--IRNIQSRTGTS-------------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCGG---G--CSSCCCCCCCS--------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCch---H--HHHHHHhcCCC--------------
Confidence 3556788999999999887655544432 355789887764210 0 00111111110
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
...+-+.+...++..+.. ...-..+++|||||++.+.. .....+..+.. ...++|++.-
T Consensus 66 -----~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 66 -----LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFDD-RICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp -----SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSCT-HHHHHHHHHHH---TTCEEEEECC
T ss_pred -----ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCcH-HHHHHHHHHHh---CCCeEEEEec
Confidence 013445667777777765 22234589999999996532 23334444333 3566666554
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00027 Score=69.26 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc--c
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF--T 189 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~--~ 189 (337)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... ...+.++|++++|+..+.++.+.+..+... .
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~ 83 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQG 83 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS--CCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCT
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC--CCChhhEEEEeccHHHHHHHHHHHHHHhccccC
Confidence 3568999999973 467899999999999988655555444321 123568999999999999999988876432 2
Q ss_pred CcEEEEE
Q psy3143 190 SVEVALS 196 (337)
Q Consensus 190 ~~~v~~~ 196 (337)
++.+..+
T Consensus 84 ~~~v~Tf 90 (647)
T 3lfu_A 84 GMWVGTF 90 (647)
T ss_dssp TCEEEEH
T ss_pred CcEEEcH
Confidence 3444444
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00088 Score=54.63 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=27.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.|+-.+++|++|+|||+..+--+..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeecc
Confidence 3566789999999999886544443331 245788888873
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0066 Score=53.82 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=41.3
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
..-+|||||+|.+.++.....+.++...-....-+|+.++|+...-..+... .........+.+.
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~---------------v~SR~~~~~i~F~ 196 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIM---------------PSLKAHFTEIKLN 196 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTC---------------HHHHTTEEEEECC
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchh---------------hhccCCceEEEeC
Confidence 4568999999998854433333322222223345566677763211111110 0000111234566
Q ss_pred CcchhhHHHHHHHhhh
Q psy3143 317 NIDEVRLYNVLGLMLL 332 (337)
Q Consensus 317 ~~~~~~~~~~L~~ll~ 332 (337)
+-+..+...+|+.-|.
T Consensus 197 pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 197 KVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6677778887777664
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0005 Score=54.06 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.5
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|+.+++.||+|+|||...-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999976433
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00061 Score=55.93 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|+=.+++|++|||||++.+--+.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEecc
Confidence 45578899999999988665444433 2366799998873
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0031 Score=58.37 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=74.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+-++++|++|+|||+.....+.. +. . .+.+++++. +.|.-+.. .+..++...++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~-~----~G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~------ 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YK-K----RGYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQ------ 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HH-H----TTCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCS------
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HH-H----cCCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccC------
Confidence 35778999999999876443322 21 1 245666655 44544332 33333443444332221111
Q ss_pred HHHhcCCCEEEECcHHHH-HHHhcCCCCCCCCccEEEEecccccc---cccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 207 SVLRKCPDIVIATPGRLL-DHLHNTPSFSLSDIEVLVLDEADRML---DEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~-~~l~~~~~~~l~~~~~iViDEad~l~---~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
.|..+. ..+.. .....++++|||.+-++. +..+...+..+.+...+..-+++++|+...+.
T Consensus 163 ------------dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 163 ------------NPIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp ------------CHHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred ------------CHHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 122222 12222 123468899999998653 44567777778777777777788899877665
Q ss_pred HHHHHhh
Q psy3143 283 NDLVSVS 289 (337)
Q Consensus 283 ~~~~~~~ 289 (337)
...+..|
T Consensus 228 ~~~a~~f 234 (433)
T 3kl4_A 228 YDLASRF 234 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0026 Score=56.62 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+..++++||+|+|||...-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46899999999999987533
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=65.17 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc--c
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF--T 189 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~--~ 189 (337)
..+++-|.+|+.. ....++|.|+.|||||.+..--+.+.+... .....++|+|+.|+..|.++.+.+..+... .
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 3578999999875 457899999999999988655555544321 123568999999999999998888876432 2
Q ss_pred CcEEEEEe
Q psy3143 190 SVEVALSV 197 (337)
Q Consensus 190 ~~~v~~~~ 197 (337)
++.+..++
T Consensus 86 ~~~v~Tfh 93 (724)
T 1pjr_A 86 DVWISTFH 93 (724)
T ss_dssp TSEEEEHH
T ss_pred CcEEeeHH
Confidence 45555543
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0013 Score=69.28 Aligned_cols=72 Identities=24% Similarity=0.213 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.+|+-|.++|.. .+++++|.|..|||||.+.+-=++..+..........++|++++|+..|..+...+....
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 468999999875 488999999999999998766666666432222245689999999999999988887643
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00059 Score=67.28 Aligned_cols=81 Identities=14% Similarity=0.025 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc---c
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF---T 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~---~ 189 (337)
.+++-|.+++.. .+..++|.|+.|||||.+..--+.+.+.... ....++|+|+.|+..|.++.+.+..+... .
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~ 77 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--YQARHIAAVTFTNKAAREMKERVGQTLGRKEAR 77 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC--CCHHHeEEEeccHHHHHHHHHHHHHHcCccccc
Confidence 368999999875 4678999999999999886554544443211 13568999999999999999988876432 2
Q ss_pred CcEEEEEe
Q psy3143 190 SVEVALSV 197 (337)
Q Consensus 190 ~~~v~~~~ 197 (337)
++.|..++
T Consensus 78 ~~~v~Tfh 85 (673)
T 1uaa_A 78 GLMISTFH 85 (673)
T ss_dssp TSEEEEHH
T ss_pred CCEEEeHH
Confidence 45565544
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=54.74 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
|+=.+++|+.|+|||++.+--+..... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeccC
Confidence 444568999999999887665555542 3667999998753
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0021 Score=62.42 Aligned_cols=114 Identities=22% Similarity=0.243 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHhC--CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 113 YPTPIQAATIPVALL--GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+.+-... .+++|++|+.+-+..+++....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---------~~~~vtAP~~~a~~~l~~~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---------GRAIVTAPAKASTDVLAQFAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---------SCEEEECSSCCSCHHHHHHHGG------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---------hCcEEECCCHHHHHHHHHHhhC------
Confidence 579999999988876 33578999999999977655444321 2479999999876644332110
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
.|-+..|..+.. . +...+++|||||=.+. .+.+..++. ...
T Consensus 240 -----------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaIp----~pll~~ll~----~~~ 280 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAIP----APLLHQLVS----RFP 280 (671)
T ss_dssp -----------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGSC----HHHHHHHHT----TSS
T ss_pred -----------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcCC----HHHHHHHHh----hCC
Confidence 144456765442 1 3358999999998764 344555544 223
Q ss_pred EEEEeecCch
Q psy3143 271 TMLFSATMTD 280 (337)
Q Consensus 271 ~i~~SAT~~~ 280 (337)
.++||.|+..
T Consensus 281 ~v~~~tTv~G 290 (671)
T 2zpa_A 281 RTLLTTTVQG 290 (671)
T ss_dssp EEEEEEEBSS
T ss_pred eEEEEecCCc
Confidence 4667777653
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0042 Score=52.17 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
.|+=.+++|+.|+|||.+.+--+.... ..+.+++++.|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH------HCCCeEEEEeecCC
Confidence 466678899999999988766555544 24667999988753
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0034 Score=51.32 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|+=.+++|++|||||...+-.+-+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEccc
Confidence 3566789999999999766555544443 24679999887
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0034 Score=61.64 Aligned_cols=66 Identities=26% Similarity=0.321 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHh----CCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVAL----LGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|+..|..++..+. .|. ..++.|.||||||+...- ++... +..+|||+|+..+|.|++..++.+..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~--------~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV--------NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh--------CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 57888888877544 343 467889999999987543 33333 22499999999999999999999853
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=52.37 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
...++|||||+|.+........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 46789999999998623334455555555555666665433
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.027 Score=48.51 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+.++++||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998754
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0057 Score=50.77 Aligned_cols=107 Identities=14% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|.=.+++|+.|+|||+..+--+..... .+.+++++.|...--.. ...+....++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~------~g~kvli~kp~~D~R~~----~~~I~Sr~G~~~------------- 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY------AKQKVVVFKPAIDDRYH----KEKVVSHNGNAI------------- 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC---------------CBTTBCC-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH------cCCceEEEEeccCCcch----hhhHHHhcCCce-------------
Confidence 3556789999999999876544433331 25679999986531100 011111112111
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEE
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~ 273 (337)
.-+.|..+.-+...+ ...+++|+||||+-+. ......+..+. . .+..+++
T Consensus 84 ------~a~~v~~~~di~~~i-------~~~~dvV~IDEaQFf~-~~~v~~l~~la-~--~gi~Vi~ 133 (219)
T 3e2i_A 84 ------EAINISKASEIMTHD-------LTNVDVIGIDEVQFFD-DEIVSIVEKLS-A--DGHRVIV 133 (219)
T ss_dssp ------EEEEESSGGGGGGSC-------CTTCSEEEECCGGGSC-THHHHHHHHHH-H--TTCEEEE
T ss_pred ------eeEEeCCHHHHHHHH-------hcCCCEEEEechhcCC-HHHHHHHHHHH-H--CCCEEEE
Confidence 123444443332221 2467899999999654 44555666665 2 3444443
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.016 Score=53.71 Aligned_cols=56 Identities=23% Similarity=0.144 Sum_probs=33.0
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
-++++|++|+|||+...-.+. .+. . .+.+++++. |.|.-+.. .+..++...++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~-~----~G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQ-K----RGYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHH-T----TTCCEEEEECCCSSTHHHH---HHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHH-H----CCCeEEEEeCCCcchhHHH---HHHHHHHhcCCcEE
Confidence 577899999999987644332 222 1 245676666 55554433 34444555556544
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.012 Score=48.18 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+.++++||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0042 Score=52.18 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.9
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.++.++++||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999998653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.02 Score=53.26 Aligned_cols=41 Identities=10% Similarity=0.307 Sum_probs=24.3
Q ss_pred CccEEEEecccccccc-cHHHHHHHHHHH-cCCCCeEEEEeec
Q psy3143 237 DIEVLVLDEADRMLDE-HFASQMKEIIRL-CSRTRQTMLFSAT 277 (337)
Q Consensus 237 ~~~~iViDEad~l~~~-~~~~~~~~i~~~-~~~~~q~i~~SAT 277 (337)
..++|+|||+|.+... .....+..++.. .....++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4579999999998763 233334444333 3445666654443
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0071 Score=54.09 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=25.2
Q ss_pred hHHHHHHHHHH----hCCC---CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 115 TPIQAATIPVA----LLGR---DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 115 ~~~Q~~~i~~~----~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
.|+|..++..+ .+|+ .++++||+|+|||..... +...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 45666665443 3454 389999999999987654 334443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0053 Score=55.56 Aligned_cols=20 Identities=35% Similarity=0.215 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.++.++++||+|+|||...-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34689999999999998653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.014 Score=50.59 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=30.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHH-HHHHHHH--HhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPI-QAATIPV--ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~-Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|.++.-....++.+...-. .+. ....+.. +..++.++++||+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457887777777766653210 000 0111111 124568999999999999765
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.025 Score=50.66 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=28.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
....+++|+||+|. ++......+..++...+....+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999999 55555566666776666665555555443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.037 Score=45.41 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
..-.+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 456799999999875433 345555555555555555444
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0093 Score=54.03 Aligned_cols=19 Identities=32% Similarity=0.037 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3469999999999998753
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.012 Score=47.00 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.++++||+|+|||.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999976543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.056 Score=49.25 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.049 Score=48.34 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=29.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHh-----CCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL-----LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.+++-...+.+.|...-. .|.. .|.+. ..+.++++||+|+|||..+-
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 468888777777666643100 0000 01111 23679999999999997653
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0098 Score=48.65 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH-HHHHHHHHHHHHhhccCcEEEEEeCCcc----H
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE-LGVQVYQVTRQLAQFTSVEVALSVGGLE----V 202 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~-La~q~~~~~~~l~~~~~~~v~~~~~~~~----~ 202 (337)
...+++..++|.|||.+++--++..+ +.+.+|+|+.-.+. ....-...+..+ ++.+...-.+.. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQN 97 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCC
Confidence 34789999999999999877777766 34778999953331 000001122222 233222111110 0
Q ss_pred HHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 203 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...... .....+..... .+.-..+++||+||+-..+..++ ...+..++...+...-+|+.+--.|+
T Consensus 98 ~~~~~~----------~a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 98 READTA----------ACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHH----------HHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred cHHHHH----------HHHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000000 00122222222 22235689999999976544332 24555666767777777777777777
Q ss_pred hHHHHHH
Q psy3143 281 AVNDLVS 287 (337)
Q Consensus 281 ~~~~~~~ 287 (337)
.+.+++.
T Consensus 166 ~l~e~AD 172 (196)
T 1g5t_A 166 DILDLAD 172 (196)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 7777654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0064 Score=53.47 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.+++++||+|+|||...-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3479999999999998753
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.33 Score=40.00 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||+|+|||....
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.022 Score=45.58 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999998653
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.95 E-value=0.012 Score=52.35 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=29.9
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHH-----hCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVA-----LLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~-----~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.++.-...+.+.|...-. .+. ..|.+ ...+.++++||+|+|||..+-
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 468888777777776653210 000 00111 113579999999999998653
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.09 Score=46.66 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.+++++||+|+|||...-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999998653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.037 Score=46.54 Aligned_cols=50 Identities=22% Similarity=0.058 Sum_probs=31.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
.|.-+++.|++|+|||...+..+...+. .+.+++++.-. .-..++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 4567899999999999876554444432 24467777643 23345544444
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.32 Score=42.55 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
....+|||||+|.+.... ...+..++...+....+|+ +++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~-~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFIL-SCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEE-EESCGG
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEE-EeCCcc
Confidence 456899999999875433 3445555555555555554 444443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.025 Score=51.12 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.17 Score=42.87 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||...-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.034 Score=50.06 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998753
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.075 Score=44.51 Aligned_cols=45 Identities=16% Similarity=0.018 Sum_probs=26.6
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|.-+++.||+|+|||......+...++.......+..++++.-.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 456788999999999987665444433211001113456766543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.065 Score=47.73 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+|+|||+|.+.... ...+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 356899999999876433 344555555555555555544
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.077 Score=47.06 Aligned_cols=57 Identities=9% Similarity=0.011 Sum_probs=33.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH-HHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL-GVQVYQVTRQ 184 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L-a~q~~~~~~~ 184 (337)
|.-+++.|++|+|||...+..+.+........+.+.+++++.-...+ ..++...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999987665555433211111225578888754332 3444444443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.073 Score=44.18 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.|.-+++.||+|+|||......+..... .+.+++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~------~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR------DGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH------HTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH------CCCeEEEEE
Confidence 4567889999999999765443323221 134566665
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.044 Score=47.73 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++.++++||+|+|||+.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5689999999999998653
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.13 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++||+|+|||...-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999986533
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=48.34 Aligned_cols=39 Identities=21% Similarity=0.032 Sum_probs=26.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||...+..+.+.... .+.+++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-----~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-----TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-----SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEEC
Confidence 34568899999999998766555544421 1335777764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.025 Score=52.73 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
..++++||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998653
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.33 Score=38.00 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=54.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|+|. .+.. .+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR--GIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT--TCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCchhc
Confidence 457999999999999988888764 57888999987665544332 35578999993 2322 778888
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
++++|.-..
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 999887443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.15 Score=45.69 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
.....+|||||+|.+.... ...+..++...+.... ++++++
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~-~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVK-FLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEE-EEEEES
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceE-EEEEeC
Confidence 4457899999999875433 2344444444333333 444444
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.028 Score=51.32 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=31.8
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+.+=-....+.|... -+..|..++...+ ...+.++++||+|+|||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 4688887666666666542 1222222222211 12468999999999999865
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.044 Score=59.59 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
++.++++||+|+|||..+...+.+... .+.+++++..-..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEEccccc
Confidence 679999999999999987666655542 36679998866443
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.23 Score=43.60 Aligned_cols=46 Identities=7% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+++||||||.|..... +.+...++.-+... ++++.++-+..+
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t-~fIl~t~~~~kl 125 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYA-VIVLNTRRWHYL 125 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTE-EEEEEESCGGGS
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCe-EEEEEECChHhC
Confidence 45689999999999864432 33334444333333 444444544333
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.068 Score=49.67 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=30.2
Q ss_pred CCccccCCCCHHHHHHHHhCCC---CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNY---IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~---~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
..+|.++.-...+.+.|...-. ..|..++ ......+.++++||+|+|||+.+-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHHH
Confidence 3568888766666666643210 0000000 001224689999999999997653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.27 Score=45.61 Aligned_cols=38 Identities=21% Similarity=0.036 Sum_probs=25.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
|.-+++.|++|+|||...+-.+.+.... .+.+++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-----~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-----EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEC
Confidence 4467899999999997766555554431 1345777764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.19 Score=44.64 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=25.4
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...+++|+||+|.|.... ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999875433 345555666655555555443
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.13 Score=44.92 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=23.8
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999876433 234444555555555555544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.37 Score=42.04 Aligned_cols=20 Identities=20% Similarity=0.039 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.++-+.+.|++|+|||+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34566788999999997653
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.16 Score=48.04 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccc--cHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 236 SDIEVLVLDEADRMLDE--HFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~--~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
..-.+|||||+|.|... +....+..++... ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34579999999998653 3334555555443 45577777654
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.36 Score=37.84 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=54.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|||. .+. ..+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCccc
Confidence 567999999999999888887764 47788899987765544332 35679999993 232 2678888
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
++++|.-..
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 998887443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.17 Score=45.15 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|.-+++.|++|+|||...+..+.+..+.....+.+.+++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 346789999999999876655554332211122356788887554
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.19 Score=44.36 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=33.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcC---------CCCCC-CeeEEEEcCCHHH-HHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYK---------PRDDQ-NTRVLVLVPTREL-GVQVYQVTRQL 185 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~-~~~~lil~Pt~~L-a~q~~~~~~~l 185 (337)
|.-+++.|++|+|||...+..+.+..+.. ..++. ..+++|+.--..+ ..++...+..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 35688999999999987665555432211 11111 1678888755432 44555554443
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.35 Score=39.18 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
++++||.++++.-+..+...+... ++.+..++|+......... ......|+|+|. .+.. .+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCccc
Confidence 357999999999999988888764 4788889998776554333 235679999992 3333 678888
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 9988873
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.21 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.|.-++|.|++|+|||...+..+.+... .+.+++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH------CCCeEEEEECCC
Confidence 3557889999999999876555544432 244688877543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.5 Score=38.85 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=53.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.....+...+ .+..+|+|||. .+. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 568999999999999888887764 47888999998766554333 35578999993 222 3778889
Q ss_pred ccEEEE
Q psy3143 238 IEVLVL 243 (337)
Q Consensus 238 ~~~iVi 243 (337)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 998884
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.13 Score=45.93 Aligned_cols=49 Identities=22% Similarity=0.123 Sum_probs=31.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.|.-+++.|++|+|||...+-.+.+... .+..++|+..- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCC-CCHHHHHHHH
Confidence 4556889999999999876655555443 25567777643 2234444444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.31 Score=39.96 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=23.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||......+. . .+.+++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~--------~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L--------SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H--------HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H--------cCCcEEEEEC
Confidence 345688999999999987654443 1 2446777653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.22 Score=43.95 Aligned_cols=51 Identities=12% Similarity=-0.164 Sum_probs=32.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|.-++++|++|+|||...+..+.+... .+.+++++..- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 4567899999999999776665555542 13467777643 333444444443
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.091 Score=45.95 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
+++++||+|+|||....
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 69999999999997653
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.37 Score=38.21 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=54.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++..+..+...+... +..+..++|+.........+ ....+|+|+|. .+ . ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~-~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-A-RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-C-TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-h-cCCCccc
Confidence 568999999999999888877653 57888999988765554332 35679999993 22 2 3678889
Q ss_pred ccEEEEec
Q psy3143 238 IEVLVLDE 245 (337)
Q Consensus 238 ~~~iViDE 245 (337)
+++||.=.
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99998533
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.3 Score=44.30 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.9
Q ss_pred CCEEE--EcCCCCchhHHhH
Q psy3143 129 RDICG--CAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv--~a~TGsGKT~~~~ 146 (337)
+.+++ +|++|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46888 9999999998754
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.34 Score=45.57 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred cEEEEecccccccc----------cHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 239 EVLVLDEADRMLDE----------HFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 239 ~~iViDEad~l~~~----------~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+|+|||+|.+... .....+..++........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 58999999987642 1223344444555556667777777554
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.19 Score=44.13 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||...-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997653
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.29 Score=45.89 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=39.6
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+....+.|-||||||+...- ++... +..+|||+|+...|.|++..++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAERH--------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456788999999999976433 22221 33489999999999999999998753
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.034 Score=46.84 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=31.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|.-++++|++|+|||...+-.+.+.+.. .+..++|+.-. +-..++...+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-----~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCceeeccc-CCHHHHHHHHHH
Confidence 35678999999999998766555554321 13357776533 223444444443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.25 Score=44.37 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
|.-++|.||+|+|||...+..+..... .+.+++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEeccccc
Confidence 456889999999999866544433321 24568888765433
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.057 Score=41.59 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=18.0
Q ss_pred HHhCCCCEEEEcCCCCchhHHh
Q psy3143 124 VALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+..+.+++++|++|+|||..+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456779999999999999653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=93.62 E-value=2 Score=37.60 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-+++.|++|+|||+....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 467899999999986543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.47 E-value=1.3 Score=34.95 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=54.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|||. .+. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chh--cCcchhh
Confidence 457999999999999988888764 57788899988765543332 35679999994 222 3677888
Q ss_pred ccEEEEec
Q psy3143 238 IEVLVLDE 245 (337)
Q Consensus 238 ~~~iViDE 245 (337)
+++||.=.
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 89888643
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=93.44 E-value=0.41 Score=42.84 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|+-+++.|++|+|||...+..+..... .+.+++++.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC
Confidence 3567889999999999876655554442 24568887644
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.13 Score=51.87 Aligned_cols=19 Identities=26% Similarity=0.164 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
++++++||+|+|||...-.
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 4799999999999986543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.32 Score=41.85 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=20.3
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPIL 150 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l 150 (337)
+..|.-+++.|++|+|||+.....+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44677889999999999987655444
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.29 Score=43.86 Aligned_cols=43 Identities=16% Similarity=-0.018 Sum_probs=25.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
|.-+.+.||+|+|||......+.........++.+++++++.-
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4467899999999998765544332110001111357777764
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.068 Score=41.23 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.4
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46679999999999999765
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.23 E-value=3.3 Score=36.26 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=29.7
Q ss_pred cHHHHHHHhcCCCCCCCCccEEEEeccccccc---ccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 220 PGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD---EHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 220 p~~l~~~l~~~~~~~l~~~~~iViDEad~l~~---~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
...++..+..... .--+|||||+|.+.. ..+...+..+....+ +..+| ++.+
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEES
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcC
Confidence 4455555544211 234899999999764 356666666665542 44444 4444
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.4 Score=39.53 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|.-+.+.||+|+|||+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 455688999999999986544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.15 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.++-+++.|++|+|||+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355788999999999987544
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=92.82 E-value=1.6 Score=40.11 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=25.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQ 177 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q 177 (337)
++-+++.|++|+|||+.....+.... . .+.+++++. +.+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~--~----~g~~Vllvd~D~~r~aa~~ 143 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK--G----KGRRPLLVAADTQRPAARE 143 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH--T----TTCCEEEEECCSSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--H----cCCeEEEeeccccCchhHH
Confidence 34567889999999987544332221 1 244566655 55555543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.22 Score=43.23 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||+.....+..... . .+.+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~----~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT-A----MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH-T----SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-H----cCCeEEEEeC
Confidence 4667889999999999876544433321 1 1335766653
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.44 Score=47.41 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
+++++||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998753
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=92.07 E-value=1.8 Score=41.06 Aligned_cols=78 Identities=9% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++|+.-|..++..+..... .++.+..++|+......... .....+|+|||. .+.. .+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc--CCCcc
Confidence 356899999999999999988887532 25788889998876554333 335679999994 3333 78899
Q ss_pred CccEEEEecc
Q psy3143 237 DIEVLVLDEA 246 (337)
Q Consensus 237 ~~~~iViDEa 246 (337)
.+++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 9999886544
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=91.91 E-value=1.7 Score=37.76 Aligned_cols=20 Identities=30% Similarity=0.130 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++-+++.|++|+|||+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567889999999986543
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.91 Score=40.56 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=57.4
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..++..++.. +..+..++|+.........+ ....+|+|||. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888764 46788899988765544332 34578999994 332 378899
Q ss_pred CccEEEEecccc
Q psy3143 237 DIEVLVLDEADR 248 (337)
Q Consensus 237 ~~~~iViDEad~ 248 (337)
.+++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999999765553
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.64 E-value=1.1 Score=40.55 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=54.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++..+..+...+... ++.+..++|+.........+ ....+|+|||. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 4678999999999999988887764 57888999988765543332 35679999994 3333 78899
Q ss_pred CccEEEE
Q psy3143 237 DIEVLVL 243 (337)
Q Consensus 237 ~~~~iVi 243 (337)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998886
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.068 Score=49.38 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred CCccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 90 NSSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+|.+++-.....+.|... .+..|..++...++ ..+.++++||+|+|||+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 34799998888887777542 22334433332221 2468999999999999865
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.47 Score=38.10 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=45.2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+...+... ++.+..++|+....... ........|+|+|. .+.. .+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhc--CCCcc
Confidence 3567999999999999888887764 57788888876544332 23345678999993 2222 67788
Q ss_pred CccEEEE
Q psy3143 237 DIEVLVL 243 (337)
Q Consensus 237 ~~~~iVi 243 (337)
.+++||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 8998886
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.41 E-value=1.3 Score=38.71 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=52.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..+...+... ++.+..++|+.....+...+ ....+|+|||. .+ . ..+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~-~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-A-RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-T-CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-h-cCccccc
Confidence 567999999999988887776653 57889999997665544333 35679999993 22 2 2678888
Q ss_pred ccEEEE
Q psy3143 238 IEVLVL 243 (337)
Q Consensus 238 ~~~iVi 243 (337)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=91.08 E-value=1.6 Score=39.23 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=54.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..++..+... +..+..++|+.........+ ....+|+|||. .+.. .+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS--SCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc--CCCccC
Confidence 568999999999999988888765 46788899988765554333 35678999994 3333 788999
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998853
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=91.07 E-value=2.7 Score=40.16 Aligned_cols=78 Identities=9% Similarity=0.165 Sum_probs=58.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-|..++..+..... .++.+..++|+......... .....+|+|||. .+.. .+++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCccc
Confidence 56899999999999999988887532 25778889999876554333 335678999994 3333 788999
Q ss_pred ccEEEEeccc
Q psy3143 238 IEVLVLDEAD 247 (337)
Q Consensus 238 ~~~iViDEad 247 (337)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9999876543
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.39 Score=44.43 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=48.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.+|++.-|..++..++.. ++.+..++|.........+.....+|+|||. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM--GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC--CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe--eeccC-ceEE
Confidence 457999999999999998888765 5788889986655555555556789999994 3333 67788 8887
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=90.98 E-value=2.4 Score=39.02 Aligned_cols=44 Identities=20% Similarity=0.109 Sum_probs=26.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQ 177 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q 177 (337)
+.++++|++|+|||+...-.+..... . .+.+++++. |.+..+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~-~----~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLRE-K----HKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-T----SCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-h----cCCeEEEEecCCCCccHHH
Confidence 35678899999999876443333221 1 144566665 55555443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.43 Score=44.22 Aligned_cols=38 Identities=16% Similarity=-0.098 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||...+-.+.+.... +.+++|+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc------CCEEEEEEC
Confidence 34568899999999998776666665531 456787763
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.44 Score=41.81 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+++++++||+|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986543
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=90.54 E-value=0.69 Score=42.60 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=50.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++||.+|++.-+..++..+... +..+..++|+..............+|+|||. .+.. .+++. +.+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcEE
Confidence 457999999999999988888775 5788999988654444455566789999994 3333 56666 5555
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=90.53 E-value=4.7 Score=39.25 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=58.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..+...+... ++.+..++|+......... ..+..+|+|||. .+. ..+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccCC
Confidence 568999999999999888887764 4777888888765544433 235679999994 222 3788999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
++++|+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=90.52 E-value=1.5 Score=38.73 Aligned_cols=18 Identities=28% Similarity=0.240 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|.-+.+.||+|+|||+..
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445779999999999864
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.6 Score=46.54 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+.+|++||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.49 Score=50.92 Aligned_cols=123 Identities=14% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
|+-+.+.||.|||||+..+..+.+... .+.+|+++.+-.+|.... ++.++ +++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~------~g~~~~~i~~e~~~~~~~---~~~~G----v~~-------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIY---ARKLG----VDI-------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHHH---HHHTT----CCG--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEEecCCCCCHHH---HHHcC----CCH--------------
Confidence 456889999999999987665544432 367899999877775543 44433 221
Q ss_pred HHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEEecccccccc--------------c---HHHHHHHHHHHcCCCC
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVLDEADRMLDE--------------H---FASQMKEIIRLCSRTR 269 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iViDEad~l~~~--------------~---~~~~~~~i~~~~~~~~ 269 (337)
-++++.-|..--+++.-- ..+.-..+++||||.+-.+... + +...++++...+++..
T Consensus 1484 -----~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~ 1558 (1706)
T 3cmw_A 1484 -----DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1558 (1706)
T ss_dssp -----GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 035666663322222100 0111234789999998876542 1 1222455555555555
Q ss_pred eEEEEeecCchhH
Q psy3143 270 QTMLFSATMTDAV 282 (337)
Q Consensus 270 q~i~~SAT~~~~~ 282 (337)
-+++|...+...+
T Consensus 1559 ~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1559 TLLIFINQIRMKI 1571 (1706)
T ss_dssp CEEEEEECBC---
T ss_pred cEEEEeecccccc
Confidence 5677777766544
|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.68 Score=48.47 Aligned_cols=58 Identities=24% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCC------CCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKP------RDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
...+|.|.-|||||.+...-++..++... ......++|+|+=|+..|..+..++....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 34599999999999987776777775321 11235589999999999999888777543
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.33 Score=44.75 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
...+++|.|+||||||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4579999999999999975
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.60 E-value=1.2 Score=48.64 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.++.++++|++|+|||......+.+.+. .+.+++++.-. ++..++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k------~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTT-SCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEcc-ccHHHHH
Confidence 5678999999999999988777777662 35678888643 3333433
|
| >2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.52 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
.+-|..++..++..+ -.++.++-|++||...+.-++.... ..|.++.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~-----~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR-----EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH-----HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH-----hcCeEEEEEcCchHHHHH
Confidence 567888888886544 5678999999999986555544432 247789999999776544
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.65 Score=40.92 Aligned_cols=41 Identities=5% Similarity=-0.130 Sum_probs=29.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
-+++.||+|+|||...+..+.+.... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchh
Confidence 57899999999998876665555421 125689998876555
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.73 Score=45.12 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=50.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.+|++.-+..++..+... ++.+..++|.........+.....+|||||. .+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcEE
Confidence 568999999999999888877754 5788999986444443444456689999993 3333 67777 8876
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=89.15 E-value=0.59 Score=44.01 Aligned_cols=50 Identities=12% Similarity=-0.067 Sum_probs=31.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.|.-+++.|++|+|||...+..+.+.... .+.+++++.-- .-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-----~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-----MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-----SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-----cCCcEEEEecc-CCHHHHHHHH
Confidence 45568899999999998776666655421 14467777642 2234544444
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=89.08 E-value=1.1 Score=41.36 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++|++|+|||+...-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987544
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=88.97 E-value=1.4 Score=38.89 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+.+.+... +..+..++|+.........+ ....+|+|||. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcc
Confidence 3567999999999999988888765 47788889987765544332 34678999993 2333 56788
Q ss_pred CccEEEEec
Q psy3143 237 DIEVLVLDE 245 (337)
Q Consensus 237 ~~~~iViDE 245 (337)
.++++|.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 889888643
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.92 E-value=2.5 Score=38.73 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
++||.++|+.-|..+...+... ++.+..++|+.........+ .....|+|||. .+.+ .+++..++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCC
Confidence 4999999999999888887764 57888999998765554333 35679999994 3333 78899999
Q ss_pred EEEE
Q psy3143 240 VLVL 243 (337)
Q Consensus 240 ~iVi 243 (337)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=88.89 E-value=4.6 Score=36.30 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=53.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
..++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|+|. .+.. .+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR--GLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS--SCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC--cCCccc
Confidence 458999999999999888887764 46788889988765543332 35678999994 3333 788999
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998863
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=0.83 Score=39.47 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
..++++++||+|+|||...-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999997653
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=1.7 Score=41.86 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++|+.-+.+++..+... ++.+..++++....... .+.....+|+|+|. .+ . ..+++.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~-~GID~p 334 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-G-MGIDKP 334 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-C-TTCCCS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-h-cCCCcc
Confidence 3568999999999999998888764 57889999998765543 33345679999993 22 2 267888
Q ss_pred CccEEEE
Q psy3143 237 DIEVLVL 243 (337)
Q Consensus 237 ~~~~iVi 243 (337)
++++||.
T Consensus 335 ~V~~VI~ 341 (591)
T 2v1x_A 335 DVRFVIH 341 (591)
T ss_dssp CEEEEEE
T ss_pred cccEEEE
Confidence 9998885
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=88.74 E-value=0.54 Score=38.69 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+.-|..++..+..|.-+.+.||+|||||+..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4456778888888888999999999999865
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=88.74 E-value=0.5 Score=44.62 Aligned_cols=41 Identities=12% Similarity=-0.058 Sum_probs=26.0
Q ss_pred HHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHh
Q psy3143 103 LKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+..|...|.. ++.+...+.. +..|..++++||||||||+..
T Consensus 236 ~~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3445555532 2333333333 456788999999999999764
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=88.64 E-value=0.99 Score=38.62 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=32.0
Q ss_pred CHHHHHHHHhCCCCCChHHHH-HHHHHHhCCC-----CEEEEcCCCCchhHHhH
Q psy3143 99 SRPLLKAIGALNYIYPTPIQA-ATIPVALLGR-----DICGCAATGTGKTAAFM 146 (337)
Q Consensus 99 ~~~l~~~l~~~~~~~p~~~Q~-~~i~~~~~~~-----~~lv~a~TGsGKT~~~~ 146 (337)
...+.+-|+..|+. +++- .++..++.++ .++++||+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34778888888876 4443 3355555554 48999999999998765
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=1.8 Score=40.89 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=54.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..++..+... ++.+..++|+....... .+.....+|+|||. .+ . ..+++.+
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~-~GiD~p~ 304 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-G-MGINKPN 304 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-C-TTTCCTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-h-CCCCccC
Confidence 557999999999999998888764 57888999998765443 33345689999994 22 2 2678889
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.=
T Consensus 305 v~~VI~~ 311 (523)
T 1oyw_A 305 VRFVVHF 311 (523)
T ss_dssp CCEEEES
T ss_pred ccEEEEE
Confidence 9988863
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.42 E-value=0.61 Score=43.90 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 117 IQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 117 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.-..++-.+..+.+++++||+|+|||..+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33455556678899999999999999754
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=88.42 E-value=1.9 Score=38.72 Aligned_cols=72 Identities=7% Similarity=0.101 Sum_probs=53.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..++..+... +..+..++|+.........+ .....|+|||. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 458999999999999988888765 46788889988765543332 35578999993 222 2678889
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9988863
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=88.34 E-value=0.5 Score=42.85 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=28.0
Q ss_pred CccEEEEeccccccc---ccHHHHHHHHHHHcCC-CCeEEEEeecCc
Q psy3143 237 DIEVLVLDEADRMLD---EHFASQMKEIIRLCSR-TRQTMLFSATMT 279 (337)
Q Consensus 237 ~~~~iViDEad~l~~---~~~~~~~~~i~~~~~~-~~q~i~~SAT~~ 279 (337)
.-.++|+||||.++. ..+...+..+++..++ ..-+++.|-++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 356899999999985 3356666666665543 445555565544
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=88.27 E-value=1.8 Score=38.62 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+...+... ++.+..++|+......... ......|+|||. .+. ..+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS--SCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888764 4778888998765544333 234679999993 222 377899
Q ss_pred CccEEEEeccc
Q psy3143 237 DIEVLVLDEAD 247 (337)
Q Consensus 237 ~~~~iViDEad 247 (337)
.+++||.-...
T Consensus 318 ~~~~Vi~~~~p 328 (391)
T 1xti_A 318 RVNIAFNYDMP 328 (391)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99999875443
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=0.37 Score=40.98 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.9
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+..++++|++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35679999999999999754
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=14 Score=35.83 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=57.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+..+..+...+... ++.+..++|+......... ..+..+|+|||. .+. ..+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCC
Confidence 568999999999999888877764 4677888888765544433 234579999993 222 3788999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
++++|+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.89 E-value=0.31 Score=38.94 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-++++||+|+|||+..-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778899999999998653
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=87.77 E-value=0.71 Score=41.31 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
..++++++||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999865
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.71 E-value=0.15 Score=44.60 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=30.4
Q ss_pred CccccCCCCHHHHHHHHhCC---CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALN---YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.+++-...+.+.|...- ...|..+... .+..++.++++||+|+|||+..-
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHHH
Confidence 46888876676666664320 0001000000 01245689999999999998653
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=87.60 E-value=0.65 Score=41.64 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.+..++++||||||||+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4557889999999999764
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=87.27 E-value=4.8 Score=37.53 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=51.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
++..+|++.+..-+..+.+.+... +.++..++|+........ ......+|+|||+..+.. .+++..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------cccccc
Confidence 344555555566666555555543 247888899887554432 234567999999766554 678999
Q ss_pred ccEEEEeccc
Q psy3143 238 IEVLVLDEAD 247 (337)
Q Consensus 238 ~~~iViDEad 247 (337)
+++||+..+.
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999998877
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=87.21 E-value=0.73 Score=38.88 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=29.1
Q ss_pred CccccCCCCHHHHHHHHhCC--CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALN--YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~--~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.++.-...+.+.+...- +..|..++.. .....+.++++||+|+|||...-
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHHH
Confidence 56888777776666654310 0011100000 01124579999999999997653
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=87.20 E-value=0.27 Score=38.86 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++-++++|++|||||+..-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.11 E-value=0.38 Score=39.10 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-+.+.||+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998753
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=87.09 E-value=0.28 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
...+..++++++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334556889999999999999764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=0.78 Score=49.42 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.|+.++++|++|+|||...+..+.+.+. .+.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh------CCCceEEEEecC
Confidence 3678999999999999887776666653 245688887554
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=86.99 E-value=1.3 Score=41.00 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=50.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++||.+|++.-|..++..+... ++.+..+++...............+|+|||. .+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEE
Confidence 457999999999999888887654 5778888887765444444456689999993 3333 677777 666
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.97 E-value=0.38 Score=44.39 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=30.9
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
-+|.+.+--....+.|... .+..|..++...+ .-.+.+|++||+|+|||+.+-
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHH
Confidence 3588877666666665432 1112222221111 124689999999999998753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=86.92 E-value=0.31 Score=39.37 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
|.++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57899999999999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=86.91 E-value=1.5 Score=43.58 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHh-------hccCcEEEEEeCCccHHHHHHHHhc---------CCCEEEECcHHHHH
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLA-------QFTSVEVALSVGGLEVKVQESVLRK---------CPDIVIATPGRLLD 225 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~-------~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~Ilv~Tp~~l~~ 225 (337)
++++||.+|++.-+..+...+.... ...++.+..++|+.....+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5689999999999999988887532 2247889999999987776655432 357999994
Q ss_pred HHhcCCCCCCCCccEEEE
Q psy3143 226 HLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 226 ~l~~~~~~~l~~~~~iVi 243 (337)
.+.. .+++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 3333 678888887774
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=86.83 E-value=0.22 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
..++.++++|++|||||...-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3567899999999999987543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=86.74 E-value=0.26 Score=40.19 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHhH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
+..|+-++++||+|||||+..-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 3467789999999999998653
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.70 E-value=0.23 Score=46.09 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=32.5
Q ss_pred CccccCCCCHHHHHHHHhCC---CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALN---YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+.+--..+.+.|...= +..|-.++... +.-.+.+|++||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 46888887777777775421 12222222111 123468999999999999765
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=86.67 E-value=1.6 Score=45.56 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+++++|++|++.-+..+...+.... .+..+..++|+........ +..+..+|+|||. .+.. .+++.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~--GiDip 881 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET--GIDIP 881 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGG--GSCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccee--eeccc
Confidence 35689999999999999888888753 3578889999987655433 3345689999994 3333 78899
Q ss_pred CccEEEEecccc
Q psy3143 237 DIEVLVLDEADR 248 (337)
Q Consensus 237 ~~~~iViDEad~ 248 (337)
++++||+..++.
T Consensus 882 ~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 882 TANTIIIERADH 893 (1151)
T ss_dssp TEEEEEETTTTS
T ss_pred CCcEEEEeCCCC
Confidence 999999887765
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.63 E-value=0.19 Score=46.24 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=31.0
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
-+|.+.+--..+.+.|... .+..|-.++...+ ...+.++++||+|+|||+.+-
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHH
Confidence 4688887666666665431 1112222221111 124679999999999998653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.43 Score=38.70 Aligned_cols=21 Identities=24% Similarity=0.004 Sum_probs=17.6
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.++.++++|++|||||+..-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567899999999999987543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=86.35 E-value=0.48 Score=42.59 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHh
Q psy3143 125 ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+..|..++++||||||||+..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 457889999999999999854
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.29 E-value=0.33 Score=38.64 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++|++|||||+..-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999987644
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.14 E-value=0.45 Score=38.94 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-++++||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45678899999999998653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=86.10 E-value=0.33 Score=37.95 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++|++|||||+..-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999987543
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=86.01 E-value=16 Score=34.18 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=24.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC--CHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP--TRELG 175 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P--t~~La 175 (337)
.++++|++|+|||+...-.+.... . .+.+++++.. .|..+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~-----~G~kVllVd~D~~r~aa 144 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-R-----KGWKTCLICADTFRAGA 144 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H-----TTCCEEEEEECCSSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-h-----CCCeEEEEeccccchhH
Confidence 577899999999987644333222 1 1445666653 34444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=85.83 E-value=0.42 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
+..+++.|++|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999865
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=85.67 E-value=0.52 Score=38.49 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=16.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILE 151 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~ 151 (337)
-.+++|++|||||+.....++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3679999999999976443333
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.59 E-value=0.41 Score=40.93 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.8
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|.-+.+.||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667889999999999864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.49 E-value=0.51 Score=43.32 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=32.4
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+++=-....+.|... .+..|..++...+ -..+.+|++||+|+|||+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 4788887666666666432 1223333332221 12468999999999999865
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=0.44 Score=38.92 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.++-+++.||||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3567899999999998654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=85.37 E-value=0.42 Score=42.48 Aligned_cols=19 Identities=32% Similarity=0.280 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+-++|+||||||||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999987543
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=85.21 E-value=2.4 Score=40.98 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=50.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.++|+.-|..++..+... +..+..++|...............+|||||. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEE
Confidence 457999999999999988888765 4778888886554444455556789999994 3333 66774 7776
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=85.14 E-value=0.53 Score=38.40 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.6
Q ss_pred hCCCCEEEEcCCCCchhHHhH
Q psy3143 126 LLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~ 146 (337)
..|+-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367789999999999998653
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=85.12 E-value=0.89 Score=37.35 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhCC----CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 100 RPLLKAIGALNYIYPTPIQAATIPVALLG----RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 100 ~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
..+.+-|+-.|+. +... ..++..++.+ +.+++.||+|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3566666655544 3333 4445555544 25899999999999765 3344433
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=85.11 E-value=0.41 Score=38.18 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.-++++|++|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678999999999998753
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=85.11 E-value=0.44 Score=41.91 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+-++|+||||||||....-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3577899999999987543
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=84.70 E-value=4.5 Score=36.86 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=51.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeC--------CccHHHH----HHHHhcCCCEEEECcHHHHHHHhc
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG--------GLEVKVQ----ESVLRKCPDIVIATPGRLLDHLHN 229 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~--------~~~~~~~----~~~~~~~~~Ilv~Tp~~l~~~l~~ 229 (337)
+.++||.++++..+..+...+... ++.+..++| +.....+ ..+....+.|+|+|. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 668999999999999888888765 577888888 4433222 223335579999993 2323
Q ss_pred CCCCCCCCccEEEEecc
Q psy3143 230 TPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 230 ~~~~~l~~~~~iViDEa 246 (337)
.+++..+++||+-+.
T Consensus 432 --Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 --GLDVPEVDLVVFYEP 446 (494)
T ss_dssp --GGGSTTCCEEEESSC
T ss_pred --CCCchhCCEEEEeCC
Confidence 678888999886543
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=84.63 E-value=0.62 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.5
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++++|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4668999999999999764
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=84.59 E-value=0.53 Score=41.29 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++|+||||||||....-
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 477899999999987543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.52 E-value=0.57 Score=37.90 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.1
Q ss_pred hCCCCEEEEcCCCCchhHHhH
Q psy3143 126 LLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~ 146 (337)
..|.-+++.|++|||||+..-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356778899999999998653
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.88 E-value=0.19 Score=39.78 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=50.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++..+..+...+... ++.+..++|+.........+ ....+|+|+|. .+.. .+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR--GIDIPD 98 (170)
Confidence 567999999999998888877664 46777788876544433222 34568999993 2222 667778
Q ss_pred ccEEEEec
Q psy3143 238 IEVLVLDE 245 (337)
Q Consensus 238 ~~~iViDE 245 (337)
+++||.-.
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 88877643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=84.43 E-value=5.6 Score=37.21 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.|++|+|||+...
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 46789999999998653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=84.37 E-value=0.48 Score=37.87 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+..++++|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998753
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=84.37 E-value=0.55 Score=39.84 Aligned_cols=18 Identities=22% Similarity=0.003 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++||||||||..+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 368999999999987643
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.27 E-value=0.59 Score=37.78 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56678899999999998653
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=84.26 E-value=0.53 Score=42.07 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++||+|+|||...-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999987543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=84.13 E-value=0.46 Score=37.43 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-++++|++|||||+..-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998653
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=84.12 E-value=0.39 Score=38.45 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.1
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|.-+++.|++|||||+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=84.06 E-value=0.95 Score=41.54 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=19.2
Q ss_pred HHHHHHHHhC--CCCEEEEcCCCCchhHHh
Q psy3143 118 QAATIPVALL--GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 118 Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~ 145 (337)
+..++..++. |.-+++.||||||||+..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3444544443 345789999999999864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=83.86 E-value=0.82 Score=41.69 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=27.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
|.-+.|.||+|+|||......++..+......+.+.+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 45688999999999987654444443211111234568887643
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=83.58 E-value=1.5 Score=36.50 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=19.1
Q ss_pred CCC-CEEEEcCCCCchhHHhHHHHHHH
Q psy3143 127 LGR-DICGCAATGTGKTAAFMLPILER 152 (337)
Q Consensus 127 ~~~-~~lv~a~TGsGKT~~~~~~~l~~ 152 (337)
.|+ ++++.++.|+|||...+--+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 344 68899999999999865444433
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.47 E-value=0.38 Score=38.33 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|..++++|++|||||+..-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355688999999999987543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=83.35 E-value=0.62 Score=41.29 Aligned_cols=20 Identities=35% Similarity=0.747 Sum_probs=17.3
Q ss_pred HhCCCCEEEEcCCCCchhHH
Q psy3143 125 ALLGRDICGCAATGTGKTAA 144 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~ 144 (337)
+..|..+.+.||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999984
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=83.32 E-value=0.52 Score=36.81 Aligned_cols=18 Identities=11% Similarity=-0.276 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++|++|||||+..-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=83.29 E-value=1.3 Score=39.64 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=27.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|+-+++.|++|+|||...+..+.+... .+.+++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCC
Confidence 4567899999999999887665555442 24468888753
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=83.21 E-value=0.46 Score=41.26 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+.++++||+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=83.17 E-value=1.7 Score=40.87 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
+.+++|.|.||||||.+.-..+...+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999876554444443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=0.79 Score=37.97 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.2
Q ss_pred HhCCCCEEEEcCCCCchhHHhH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
+..|+-+++.||+|+|||+..-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4567788999999999998653
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=82.47 E-value=1.8 Score=41.29 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.+++|.|.||||||.+....++..+..... ...+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP--~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTP--SEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCC--cceEEEEeCCC
Confidence 579999999999998866555555533221 23455555554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=82.42 E-value=6.7 Score=36.94 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|.-+++.|++|+|||......+-... . .+.+++++++... ..|+...+..+ ++ ....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~--~----~G~~vi~~~~ee~-~~~l~~~~~~~----g~---------~~~~-- 337 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC--A----NKERAILFAYEES-RAQLLRNAYSW----GM---------DFEE-- 337 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH--T----TTCCEEEEESSSC-HHHHHHHHHTT----SC---------CHHH--
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--h----CCCCEEEEEEeCC-HHHHHHHHHHc----CC---------CHHH--
Confidence 455788999999999987654333222 1 1345777776433 23444333221 11 1111
Q ss_pred HHHhcCCCEEE-------ECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-----HHHHHHHHHHHcCC-CCeEEE
Q psy3143 207 SVLRKCPDIVI-------ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-----FASQMKEIIRLCSR-TRQTML 273 (337)
Q Consensus 207 ~~~~~~~~Ilv-------~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-----~~~~~~~i~~~~~~-~~q~i~ 273 (337)
....+ .+-+ .+.+...+.+.. .....+.+++|+| -=.-++.. ....+..+++.+.. ..-+|+
T Consensus 338 -~~~~g-~~~~~~~~p~~LS~g~~q~~~~a--~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 338 -MERQN-LLKIVCAYPESAGLEDHLQIIKS--EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp -HHHTT-SEEECCCCGGGSCHHHHHHHHHH--HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -HHhCC-CEEEEEeccccCCHHHHHHHHHH--HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 11111 1111 134444443332 1124567899999 44444555 56666666665533 444555
Q ss_pred EeecC
Q psy3143 274 FSATM 278 (337)
Q Consensus 274 ~SAT~ 278 (337)
.|-..
T Consensus 413 vsh~~ 417 (525)
T 1tf7_A 413 TNTSD 417 (525)
T ss_dssp EEECS
T ss_pred EECcc
Confidence 55544
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=82.39 E-value=0.92 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.7
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|+-+.+.||+|+|||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=82.36 E-value=0.53 Score=37.17 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.2
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+.++||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567899999999998764
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=82.14 E-value=4.4 Score=37.93 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=47.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeC--------CccHHHHH----HHHh-cCCCEEEECcHHHHHHHh
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG--------GLEVKVQE----SVLR-KCPDIVIATPGRLLDHLH 228 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~--------~~~~~~~~----~~~~-~~~~Ilv~Tp~~l~~~l~ 228 (337)
+.++||.++++..+..+...+........+.+..++| +.....+. .+.. ...+|+|||. .+.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 5689999999999999999998865444455555554 33322222 2223 4579999994 222
Q ss_pred cCCCCCCCCccEEEEec
Q psy3143 229 NTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 229 ~~~~~~l~~~~~iViDE 245 (337)
..+++..+++||.=.
T Consensus 464 --~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 464 --EGIDIAECNLVILYE 478 (555)
T ss_dssp --CCEETTSCSEEEEES
T ss_pred --cCCccccCCEEEEeC
Confidence 367889999988643
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=82.14 E-value=0.66 Score=37.56 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+++.|++|||||+..-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999998753
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=81.92 E-value=0.77 Score=40.51 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++||||||||.....
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3588999999999987543
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=81.77 E-value=3.4 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
..+++++||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4589999999999997653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=81.67 E-value=0.69 Score=41.76 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.6
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|..++++||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999864
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=0.59 Score=36.80 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
|..++++|++|||||+..-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999987533
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=81.55 E-value=0.71 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=17.6
Q ss_pred hCCCCEEEEcCCCCchhHHhHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
..+.-++++|++|||||+..-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3556789999999999987543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=81.28 E-value=4.1 Score=35.25 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=49.0
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+.+.+. .+..++|+.........+ ....+|+|||. .+.. .+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASR--GLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHT--TCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cccc--CCCcc
Confidence 35679999999998877665444 456677877655543332 35679999994 3433 78889
Q ss_pred CccEEEEec
Q psy3143 237 DIEVLVLDE 245 (337)
Q Consensus 237 ~~~~iViDE 245 (337)
.++++|.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 999988643
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=0.84 Score=42.37 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++||+|+|||..+-.
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 36899999999999987643
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=80.72 E-value=0.41 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=0.81 Score=39.67 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
..++++||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=80.70 E-value=0.91 Score=40.35 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++|+||||||||.....
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999987543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=80.65 E-value=0.64 Score=37.08 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.-++++|++|||||+..-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34588999999999987543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.63 E-value=0.74 Score=37.23 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+-++++|++|||||+..-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999987543
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.61 E-value=2.8 Score=40.85 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=62.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHH--hhccCcEEEEEeCC--------ccHHHHHHHH----hcCCCEEEECcHHHHHHH
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQL--AQFTSVEVALSVGG--------LEVKVQESVL----RKCPDIVIATPGRLLDHL 227 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l--~~~~~~~v~~~~~~--------~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l 227 (337)
+.++||.++++..+..+...+... ....++.+..++|+ .....+...+ ....+|||||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999998888764 22236788888888 5555443332 34578999993 22
Q ss_pred hcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 228 HNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 228 ~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
. ..+++..+++||.=.. ..+....++++-+.-.....+++++..
T Consensus 475 -~-~GIDip~v~~VI~~d~----p~s~~~~~Qr~GRArr~g~~~~l~~~~ 518 (699)
T 4gl2_A 475 -E-EGLDIKECNIVIRYGL----VTNEIAMVQARGRARADESTYVLVAHS 518 (699)
T ss_dssp -C-TTSCCCSCCCCEEESC----CCCHHHHHHHHTTSCSSSCEEEEEEES
T ss_pred -c-cCCccccCCEEEEeCC----CCCHHHHHHHcCCCCCCCceEEEEEeC
Confidence 2 3778889998884222 233344444444432334455566553
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.59 E-value=0.79 Score=36.75 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.-++++|++|||||+..-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999998753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=80.44 E-value=1.3 Score=37.57 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.0
Q ss_pred HhCCCCEEEEcCCCCchhHHhHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.|+.+++.|++|||||+..-+
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 34589999999999999987543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=80.35 E-value=3.9 Score=46.89 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHH---HHhCCCCEEEEcCCCCchhHHhHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIP---VALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~---~~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
|...+.+.+.++|+..--.+-.+++. .+...+.+++.||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 44556667778888655455555553 344567899999999999998753
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=80.34 E-value=0.63 Score=37.57 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.-++++|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999998753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=80.26 E-value=0.67 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.042 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.-++++|++|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44688999999999987543
|
| >3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* | Back alignment and structure |
|---|
Probab=80.01 E-value=1.5 Score=45.83 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=28.5
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
+|.|..|||||.+.+-=+.+.+... ..+.++|+|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~---~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA---PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC---TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC---CCCCcEEEEecCcc
Confidence 6889999999998766555555432 23568999999863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 337 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 9e-54 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-49 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-48 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 5e-48 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 7e-47 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-45 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 1e-44 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 6e-43 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 2e-37 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-32 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 4e-27 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-23 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 3e-23 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-17 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.001 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 173 bits (440), Expect = 9e-54
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 7/211 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFML 147
E +F+++NLS +L AI + PT IQ IP+ L +I A TG+GKTA+F +
Sbjct: 2 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAI 61
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
P++E + + ++L PTREL +QV L ++++A GG + Q
Sbjct: 62 PLIELVNENNGIEA----IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L+ +IV+ TPGR+LDH+ N + +L +++ +LDEAD ML+ F +++I+ C++
Sbjct: 118 ALKN-ANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 175
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
++ +LFSATM + +L + +
Sbjct: 176 DKRILLFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 162 bits (411), Expect = 2e-49
Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
FE + V+ +F M L LL+ I A + P+ IQ I + GRD+ + +GTG
Sbjct: 7 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 66
Query: 141 KTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGL 200
KTA F + +L+ + T+ L+L PTREL VQ+ + L + +V+ +GG
Sbjct: 67 KTATFSISVLQC---LDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 123
Query: 201 EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
V L +V TPGR+ D S I++LVLDEAD ML++ F Q+ +
Sbjct: 124 NVGEDIRKLDYGQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYD 182
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+ R Q +L SAT+ + ++ + +T P+R+ V
Sbjct: 183 VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 159 bits (404), Expect = 2e-48
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 10/217 (4%)
Query: 87 VEEN-----SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
++ N F M L LL+ + + P+ IQ I + G D+ A +GTGK
Sbjct: 1 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 60
Query: 142 TAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
T F + L+R+ + + L+L PTREL +Q+ +V LA ++V +GG
Sbjct: 61 TGTFSIAALQRIDTSVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 117
Query: 202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261
LR IV+ TPGR+ D+ F I++ +LDEAD ML F Q+ +I
Sbjct: 118 FVEDAEGLRD-AQIVVGTPGRVFDN-IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 175
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
L T Q +L SATM + V ++ + + PVR+ V
Sbjct: 176 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (400), Expect = 5e-48
Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
S F L LL+AI + +P+ +Q IP A+LG D+ A +G GKTA F+L L
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV-ALSVGGLEVKVQESVL 209
+ VLV+ TREL Q+ + + +++ A+ GGL +K E VL
Sbjct: 61 Q---QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 117
Query: 210 RKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF-ASQMKEIIRLCSR 267
+K P IV+ TPGR+L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 118 KKNCPHIVVGTPGRILAL-ARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+Q M+FSAT++ + + + P+ +FV
Sbjct: 177 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 156 bits (394), Expect = 7e-47
Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 87 VEEN-----SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
+E N SF MNLS LL+ I A + P+ IQ I + G D+ A +GTGK
Sbjct: 3 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGK 62
Query: 142 TAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
TA F + IL+++ D + T+ LVL PTREL Q+ +V L + +GG
Sbjct: 63 TATFAISILQQIE---LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 119
Query: 202 VKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
V+ + L+ + P I++ TPGR+ D L N S I++ VLDEAD ML F Q+ +
Sbjct: 120 VRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 178
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
I + + Q +L SATM V ++ + P+R+ V
Sbjct: 179 IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 153 bits (387), Expect = 1e-45
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 11/227 (4%)
Query: 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
D +F ++ L + I +Y PTPIQ IP L RDI CA TG+GK
Sbjct: 12 PDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGK 71
Query: 142 TAAFMLPILERLLYKPRDDQN------TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
TAAF++PI+ L+ + + Q + L+L PTREL +Q+ +++ + T + +
Sbjct: 72 TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV 131
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
GG + Q ++ +++ATPGRL+D + SL + +VLDEADRMLD F
Sbjct: 132 VYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDMGFE 190
Query: 256 SQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
Q+++II + RQT++FSAT + L + L + + V
Sbjct: 191 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 149 bits (377), Expect = 1e-44
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 5/209 (2%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+ + F L R LL I + + P+PIQ +IP+AL GRDI A GTGK+ A+++P
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLAQFTSVEVALSVGGLEVKVQES 207
+LERL K N + +V+VPTREL +QV Q + +V + GG ++
Sbjct: 61 LLERLDLKK---DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L +VIATPGR+LD + ++++VLDEAD++L + F M++II +
Sbjct: 118 RLDDTVHVVIATPGRILDL-IKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
RQ +L+SAT +V ++ L +P +
Sbjct: 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (366), Expect = 6e-43
Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 4/208 (1%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
++F L R LL I + P+PIQ IPVA+ GRDI A GTGKTAAF++P L
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
E + L++VPTREL +Q QV R L + + ++ GG ++ L
Sbjct: 61 E---KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN 117
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ I++ TPGR+LD + LSD + ++DEAD+ML F + +++I+ T Q
Sbjct: 118 ETVHILVGTPGRVLDL-ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 176
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFV 298
++LFSAT V + + L +P + +
Sbjct: 177 SLLFSATFPLTVKEFMVKHLHKPYEINL 204
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 130 bits (328), Expect = 2e-37
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 2/209 (0%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
+ F + +++AI L + PT IQ IP AL G + G + TGTGKT A++LPI+
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 151 ERLL-YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
E++ + ++ + ++T+ + + +GG + + L
Sbjct: 61 EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
P IVI TPGR+ D + +LV+DEAD MLD F + + +I +
Sbjct: 121 NVQPHIVIGTPGRINDFIREQALDV-HTAHILVVDEADLMLDMGFITDVDQIAARMPKDL 179
Query: 270 QTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
Q ++FSAT+ + + + + P V V
Sbjct: 180 QMLVFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 119 bits (299), Expect = 1e-32
Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 28/190 (14%)
Query: 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173
P IQ L A TG GKT+ + L L R V+ PT
Sbjct: 44 PRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK------RCYVIFPTSL 97
Query: 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL------RKCPDIVIATPGRLLDHL 227
L +Q + R+ A+ V +G ++ + + IVI T L H
Sbjct: 98 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY 157
Query: 228 HNTPSFSLSDIEVLVLDEADRMLDEH-----------FASQMKEIIRLCSRTRQTMLFSA 276
L + + +D+ D +L F +K + M+ +A
Sbjct: 158 RE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTA 212
Query: 277 TMTDAVNDLV 286
T +
Sbjct: 213 TAKKGKKAEL 222
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 4e-27
Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 18/215 (8%)
Query: 91 SSFHQMNLSRPLLKAI-GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
+ +NL + + Y P Q I L GRD TG GK+ + +P
Sbjct: 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA 61
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
L +V+ P L + + + +++V
Sbjct: 62 LLLN---------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE--HFASQMKEIIRLCSR 267
++ P RL+ + + + +L +DEA + F + + +L R
Sbjct: 113 TGQIRLLYIAPERLMLD-NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171
Query: 268 --TRQTMLFSATMTDAVNDLV--SVSLTRPVRVFV 298
T M +AT D + + L P+ + +
Sbjct: 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 96.1 bits (238), Expect = 2e-23
Identities = 24/201 (11%), Positives = 57/201 (28%), Gaps = 25/201 (12%)
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
R G GKT ++ I+ + + R L+L PTR + ++ +
Sbjct: 9 KRLTIMDLHPGAGKTKRYLPAIVREAI-----KRGLRTLILAPTRVVAAEMEE------- 56
Query: 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247
+ + + + + L + + ++++DEA
Sbjct: 57 ----ALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRV--PNYNLIIMDEAH 110
Query: 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDL-------VSVSLTRPVRVFVDN 300
A++ R+ + +AT + + + P R +
Sbjct: 111 FTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSG 170
Query: 301 NHEVALNLRQEFVSFSNIDEV 321
+ V + +I
Sbjct: 171 HEWVTDFKGKTVWFVPSIKAG 191
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 93.5 bits (231), Expect = 3e-23
Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 14/188 (7%)
Query: 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK 156
++S + + P QA + G+++ T GKT + ++ +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 157 PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIV 216
+ L +VP R L + Y+ ++ + + DI+
Sbjct: 69 GKS------LYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY----ESRDEHLGDCDII 118
Query: 217 IATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK---EIIRLCSRTRQTML 273
+ T + + N + + + LV+DE + E + ++ +R ++ + +
Sbjct: 119 VTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIG 177
Query: 274 FSATMTDA 281
SAT +
Sbjct: 178 LSATAPNV 185
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 78.3 bits (191), Expect = 1e-17
Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 9/201 (4%)
Query: 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169
+ I P Q + TG GKT M+ RL +VL+L
Sbjct: 6 DLIQPRIYQEVIYA-KCKETNCLIVLPTGLGKTLIAMMIAEYRL-----TKYGGKVLMLA 59
Query: 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
PT+ L +Q + R+L ++ G + + + IV ++
Sbjct: 60 PTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI--ENDLL 117
Query: 230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289
SL D+ ++V DEA R + + + + ++ + +A+ ++ V
Sbjct: 118 AGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV- 176
Query: 290 LTRPVRVFVDNNHEVALNLRQ 310
+ ++ E + ++R
Sbjct: 177 INNLGIEHIEYRSENSPDVRP 197
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 36.4 bits (83), Expect = 0.001
Identities = 18/146 (12%), Positives = 35/146 (23%), Gaps = 24/146 (16%)
Query: 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193
A TG+GK+ + +VLVL P+ + +
Sbjct: 14 HAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKA-------- 56
Query: 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
V + S ++++ DE D
Sbjct: 57 ------HGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECH-STDAT 109
Query: 254 FASQMKEIIRLCSRTRQTMLFSATMT 279
+ ++ ++ AT T
Sbjct: 110 SILGIGTVLDQAETAGARLVVLATAT 135
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.96 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.96 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.96 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.94 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.85 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.83 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.82 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.79 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.78 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.77 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.71 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.27 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 99.1 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 99.02 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.94 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.57 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.9 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.71 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.37 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.33 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 97.32 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.31 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.31 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 97.3 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 97.27 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.27 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.03 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.01 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 97.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.97 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.95 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.95 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.53 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 96.46 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.41 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.38 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 96.03 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.82 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.77 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 95.76 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.69 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 95.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 95.22 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 95.18 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.04 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 94.75 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.48 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 94.46 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.43 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 94.42 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 94.37 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 94.16 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 94.04 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.64 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 93.63 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.61 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 93.61 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.39 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.31 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.84 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 92.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.67 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.54 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.53 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.52 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.44 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.4 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.65 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.53 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 91.19 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.16 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.95 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.86 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.78 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.68 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.36 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.27 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.19 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.74 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.35 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.31 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.21 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.19 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 89.12 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.69 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.38 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 88.13 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 87.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.15 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 86.85 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.44 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.94 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.79 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.76 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 85.72 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.12 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 85.07 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 84.94 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.77 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.5 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 84.32 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.29 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 84.28 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 83.94 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 83.81 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.78 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 83.45 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.21 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 83.0 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.95 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 82.88 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 82.77 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 82.75 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.53 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 82.31 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.27 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 81.99 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.95 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.77 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.65 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-48 Score=332.66 Aligned_cols=211 Identities=33% Similarity=0.526 Sum_probs=196.7
Q ss_pred CCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 85 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
.......+|++++|++.++++|.++||..||++|.++||.++.|+|+++.|+||||||+||++|+++.+... ...++
T Consensus 11 ~~~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~---~~~~~ 87 (222)
T d2j0sa1 11 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQ 87 (222)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCC
T ss_pred CCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc---ccCce
Confidence 334556789999999999999999999999999999999999999999999999999999999999988533 34678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEe
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViD 244 (337)
++|++|||+||.|+++.+..++.+.++++..++|+.....+...+..+++|+|+|||+|.+++... .+.+++++++|+|
T Consensus 88 ~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~-~~~~~~l~~lVlD 166 (222)
T d2j0sa1 88 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLD 166 (222)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEE
T ss_pred eEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhccccc-ccccccceeeeec
Confidence 999999999999999999999999999999999999998888888889999999999999988764 6789999999999
Q ss_pred cccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 245 EADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 245 Ead~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
|||+|++.+|...+..|++.+++.+|+++||||+++++.++++.++++|+.|.++
T Consensus 167 EaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 167 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred chhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999998874
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-46 Score=315.04 Aligned_cols=203 Identities=37% Similarity=0.624 Sum_probs=188.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.++|++++|++.++++|.++||..||++|.++||.+++|+|++++||||||||++|++|+++.+... ..++++||++
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~---~~~~~~lil~ 78 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---KDNIQAMVIV 78 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---SCSCCEEEEC
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhccccc---ccCcceEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999987533 3578899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
||++||.|++..+..+.... +..+....|+.........+..+++|+||||++|.+++.. +.+.+++++++|+||||.
T Consensus 79 pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~-~~~~~~~l~~lVlDEaD~ 157 (206)
T d1veca_ 79 PTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp SCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHH
T ss_pred ecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc-hhccccccceEEEecccc
Confidence 99999999999999887654 5777888888888888888889999999999999998876 477899999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEE
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i 296 (337)
|++.+|...+..|++.+++.+|+++||||+++++.++++.+|++|+.|
T Consensus 158 ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999999999999999999999999999876
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-45 Score=311.40 Aligned_cols=204 Identities=36% Similarity=0.622 Sum_probs=185.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|++++|+++++++|.++||.+|||+|.++||.++.|+|++++||||||||++|++|+++.+... ..+++++|++|
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~---~~~~~~lil~P 77 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMCH 77 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---TTCCCEEEECS
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeeccc---CCCceEEEEec
Confidence 369999999999999999999999999999999999999999999999999999999999987433 34678999999
Q ss_pred CHHHHHHHHHHHHHHhhccC-cEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~-~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
||+||.|+.+.+..++.+.+ +.+..++|+.....+...+ ...++|+||||++|.+++.+ +.+.+++++++|+||||.
T Consensus 78 treL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~-~~~~l~~l~~lVlDEaD~ 156 (207)
T d1t6na_ 78 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDK 156 (207)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHH
T ss_pred cchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC-Cceeccccceeehhhhhh
Confidence 99999999999999998764 6678888888877666554 56789999999999999976 477899999999999999
Q ss_pred cccc-cHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 249 MLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 249 l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
|++. +|...+..|++.+++.+|+++||||+++.+.++++.++++|+.|.|
T Consensus 157 ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 157 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp HHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred hhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9985 8999999999999999999999999999999999999999998875
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-45 Score=312.48 Aligned_cols=208 Identities=35% Similarity=0.550 Sum_probs=187.3
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
+...+|++++|++.++++|.++||.+||++|..+||.++.|+|++++|+||||||++|++|+++.+... ..++++||
T Consensus 9 e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~---~~~~~ali 85 (218)
T d2g9na1 9 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---LKATQALV 85 (218)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTT---CCSCCEEE
T ss_pred CccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheeccc---ccCccEEE
Confidence 456799999999999999999999999999999999999999999999999999999999999998532 35789999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH-HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE-SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
++||++||.|++..+..+....+..+..+.++....... ......++|+|+||++|.+++.+. ...+++++++|+|||
T Consensus 86 l~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~-~~~~~~l~~lVlDEa 164 (218)
T d2g9na1 86 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEA 164 (218)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESH
T ss_pred EcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcC-CcccccceEEEeeec
Confidence 999999999999999999999998888887766544332 233456899999999999999764 677999999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
|.|++.+|...+..|++.+++.+|+++||||+++.+.++++.++++|+.|.++
T Consensus 165 D~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 165 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred chhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999875
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-45 Score=307.24 Aligned_cols=205 Identities=33% Similarity=0.524 Sum_probs=181.4
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|++++|++.++++|.++||.+||++|..+||.++.|+|++++||||||||++|++|+++.+.. ...+++++|+
T Consensus 8 ~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~---~~~~~~~lil 84 (212)
T d1qdea_ 8 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---SVKAPQALML 84 (212)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---TCCSCCEEEE
T ss_pred cccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc---cCCCcceEEE
Confidence 3678999999999999999999999999999999999999999999999999999999999999843 2357899999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++|+.|+...+..+.......+....++.....+...++ +++|+|+||+++..++... .+.+++++++|+||||.
T Consensus 85 ~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~-~~~l~~l~~lVlDEad~ 162 (212)
T d1qdea_ 85 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADE 162 (212)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHH
T ss_pred cccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccC-ceecCcceEEeehhhhh
Confidence 999999999999999999888888888888877666655444 6799999999999988774 77899999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
|++.+|...+..|++.+++.+|+++||||+++.+.++++.++++|+.|.|
T Consensus 163 lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~v 212 (212)
T d1qdea_ 163 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212 (212)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999998864
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=7.5e-45 Score=312.87 Aligned_cols=214 Identities=34% Similarity=0.543 Sum_probs=194.6
Q ss_pred CCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC------C
Q psy3143 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP------R 158 (337)
Q Consensus 85 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~ 158 (337)
.+.....+|++++|++.++++|.++||..||++|..+||.++.|+|++++||||||||++|++|+++.++... .
T Consensus 15 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~ 94 (238)
T d1wrba1 15 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 94 (238)
T ss_dssp SCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhccccccccc
Confidence 3445568999999999999999999999999999999999999999999999999999999999999986543 2
Q ss_pred CCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 159 DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 159 ~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
...++++||++||++||.|+.+.+..++...++++..+.|+.....+......+++|+||||++|.+++... .+.+.++
T Consensus 95 ~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~-~~~l~~v 173 (238)
T d1wrba1 95 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFC 173 (238)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTC
T ss_pred CCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccC-ceecccc
Confidence 234689999999999999999999999999999999999999888887788888999999999999988774 6779999
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcC----CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
+++|+||||.|++.+|...+..|++.+. ..+|+++||||+++++..+++.||++|+.|.|+
T Consensus 174 ~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~vg 238 (238)
T d1wrba1 174 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238 (238)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred ceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEeC
Confidence 9999999999999999999999998764 256999999999999999999999999999874
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.1e-44 Score=300.16 Aligned_cols=205 Identities=36% Similarity=0.589 Sum_probs=193.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
++|.+++|++.++++|.++||.+||++|..+||.++.|+|+++.||||||||++|++|+++.+..+. .+.++++++|
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~---~~~~~~~~~~ 77 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL---NKIQALIMVP 77 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCEEEECS
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccccc---ccccceeecc
Confidence 4799999999999999999999999999999999999999999999999999999999999875433 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++++.|....+..+....++++...+|+.........+...++|+|+||++|.+++.. ..+.+.+++++|+||||.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~lV~DEaD~l~ 156 (206)
T d1s2ma1 78 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKML 156 (206)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHS
T ss_pred chhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc-ceeecccceEEEeechhhhh
Confidence 99999999999999999999999999999999988888889999999999999999976 46789999999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
+.+|...+..|++.+++.+|+++||||+|+.+.+++..|+++|+.|.+.
T Consensus 157 ~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 157 SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 9999999999999999999999999999999999999999999998764
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-43 Score=298.27 Aligned_cols=203 Identities=33% Similarity=0.547 Sum_probs=187.2
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+|++++|++.++++|.++||..|||+|.++||.+++|+ |+++++|||+|||++|++|+++.... ..++++||++
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~----~~~~~~lil~ 79 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----NNGIEAIILT 79 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----SSSCCEEEEC
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc----ccCcceEEEe
Confidence 489999999999999999999999999999999999985 99999999999999999999987632 3578999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++||.|++..+..+....+.++...+|+.....+...++ +++|+||||++|.+++.+ +.+.+++++++|+||||+|
T Consensus 80 pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~-~~~~~~~l~~lViDEad~l 157 (208)
T d1hv8a1 80 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEM 157 (208)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHH
T ss_pred eccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHc-CCCCcccCcEEEEEChHHh
Confidence 99999999999999999999999999999988877766554 579999999999999876 4778999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
++.++...+..|++.+++++|+++||||+++.+.++++.++++|..|.+.
T Consensus 158 ~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~~ 207 (208)
T d1hv8a1 158 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK 207 (208)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred hcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999998863
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=4.8e-41 Score=284.32 Aligned_cols=204 Identities=32% Similarity=0.546 Sum_probs=182.0
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
+.|++++|++.++++|+++||.+||++|.+|||.++.|+|++++||||||||++|++|+++.+... .....+++++|
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~---~~~~~~~~~~~ 77 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---RAEVQAVITAP 77 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEECS
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccc---ccccccccccc
Confidence 469999999999999999999999999999999999999999999999999999999999987533 24667999999
Q ss_pred CHHHHHHHHHHHHHHhhcc----CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFT----SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
++.++.+....+....... ...+....++.....+......+++|+||||+++..++.+. ...+++++++|+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~-~~~~~~l~~lViDEa 156 (209)
T d1q0ua_ 78 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDEA 156 (209)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT-CCCGGGCCEEEECSH
T ss_pred ccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhh-ccccccceEEEEeec
Confidence 9999999988887765543 35566667777666655566778999999999999988764 567899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
|.|++.+|...+..|++.+++++|+++||||+|+++.++++.++++|+.|.|
T Consensus 157 d~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 157 DLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred ccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999986
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.8e-30 Score=217.18 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=143.4
Q ss_pred ccccCCCCHHHHHHHHhC-CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGAL-NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~-~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.++.++|.+.+.+.|+.. ||..++|+|.++++.++.|+|+++++|||||||++|.+|++.. ..++++++|
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~---------~~~~~~v~P 73 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVSP 73 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEECS
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc---------cCceEEecc
Confidence 356788999999999877 9999999999999999999999999999999999999998753 568999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCcc----HHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLE----VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
+++|+.|+...++.+.. ......+... ............+|+++||..+....... ......++++|+|||
T Consensus 74 ~~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~-~~~~~~v~~lviDEa 148 (206)
T d1oywa2 74 LISLMKDQVDQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDEA 148 (206)
T ss_dssp CHHHHHHHHHHHHHTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESSG
T ss_pred chhhhhhHHHHHHhhcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcc-cchhheeeeeeeeee
Confidence 99999999998887653 2222222222 12222334456799999999876543321 345778999999999
Q ss_pred cccccccH--HH---HHHHHHHHcCCCCeEEEEeecCchhHHH-HHH-hhCCCCeEEEe
Q psy3143 247 DRMLDEHF--AS---QMKEIIRLCSRTRQTMLFSATMTDAVND-LVS-VSLTRPVRVFV 298 (337)
Q Consensus 247 d~l~~~~~--~~---~~~~i~~~~~~~~q~i~~SAT~~~~~~~-~~~-~~~~~p~~i~~ 298 (337)
|++.+.++ .. .+..+...+ +++|+++||||+++.+.+ +.+ .++.+|+ |.+
T Consensus 149 H~~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~p~-v~v 205 (206)
T d1oywa2 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205 (206)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE-EEE
T ss_pred eeeeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCCCCCc-EEe
Confidence 99887642 22 223344444 478999999999998865 444 3589996 544
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=1.6e-30 Score=223.50 Aligned_cols=182 Identities=21% Similarity=0.216 Sum_probs=133.9
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..|.+..+.+.+ .++.+.++..|+++|+.+++.++.|++++++||||+|||++++++++.... .+.++|||+|
T Consensus 22 ~~~~~~~~~~~~-~~~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~------~~~rvliv~P 94 (237)
T d1gkub1 22 CLFPEDFLLKEF-VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL------KGKRCYVIFP 94 (237)
T ss_dssp SCCTTHHHHHHH-HHHHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT------TSCCEEEEES
T ss_pred ccCccchhHHHH-HHHHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHH------hcCeEEEEec
Confidence 344444444444 556667888999999999999999999999999999999999999987763 3568999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcE----EEEEeCCccHHHHHHHH--hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEe
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVE----VALSVGGLEVKVQESVL--RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~----v~~~~~~~~~~~~~~~~--~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViD 244 (337)
|++|+.|+++.+++++...++. +....++.........+ ...++|+|+||++|.+.+. .++++++||||
T Consensus 95 t~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~-----~~~~~~~vVvD 169 (237)
T d1gkub1 95 TSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR-----ELGHFDFIFVD 169 (237)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCST-----TSCCCSEEEES
T ss_pred cHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhh-----hcCCCCEEEEE
Confidence 9999999999999998776544 33444444433333333 2457999999998876432 36789999999
Q ss_pred cccccccccHH-HHHHHHH----------HHcCCCCeEEEEeecCchhHHH
Q psy3143 245 EADRMLDEHFA-SQMKEII----------RLCSRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 245 Ead~l~~~~~~-~~~~~i~----------~~~~~~~q~i~~SAT~~~~~~~ 284 (337)
|||.|++.+.. ..+..++ ...+...|++++|||+++.+..
T Consensus 170 E~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 220 (237)
T d1gkub1 170 DVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKA 220 (237)
T ss_dssp CHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTH
T ss_pred ChhhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHH
Confidence 99998876522 1111111 1224567899999999876543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=2.9e-29 Score=210.24 Aligned_cols=186 Identities=18% Similarity=0.252 Sum_probs=142.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
+++.+...|.+.|+..|+|+|.++++.+++|+++++++|||||||+++.++++..+. .++++|+++|+++|+.|
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~------~~~~vl~l~P~~~L~~q 83 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPLRALAGE 83 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhh------ccCcceeecccHHHHHH
Confidence 567888999999999999999999999999999999999999999999999988774 35689999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~ 257 (337)
+...++.+.... ..+....++.... ......++|+++||..+..++.+. ...+.++++||+||+|.+.+..+...
T Consensus 84 ~~~~~~~~~~~~-~~v~~~~~~~~~~---~~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~ii~DE~h~~~~~~r~~~ 158 (202)
T d2p6ra3 84 KYESFKKWEKIG-LRIGISTGDYESR---DEHLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLLDSEKRGAT 158 (202)
T ss_dssp HHHHHTTTTTTT-CCEEEECSSCBCC---SSCSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGGGCTTTHHH
T ss_pred HHHHHHHHhhcc-ccceeeccCcccc---cccccccceeeeccHHHHHHHhcc-chhhhhhhhccccHHHHhcccccchH
Confidence 999998776543 4455555554322 122345799999999999888764 45688899999999999887664443
Q ss_pred HHHH---HHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEE
Q psy3143 258 MKEI---IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 258 ~~~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i 296 (337)
+..+ ++..++++|+++||||+++ .+.+ ..|+..+.++
T Consensus 159 ~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~-~~~l~~~~~~ 198 (202)
T d2p6ra3 159 LEILVTKMRRMNKALRVIGLSATAPN-VTEI-AEWLDADYYV 198 (202)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCTT-HHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCCcEEEEcCCCCc-HHHH-HHHcCCCeee
Confidence 3333 3445678999999999976 4554 4677554443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=9.9e-26 Score=188.12 Aligned_cols=166 Identities=20% Similarity=0.242 Sum_probs=133.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-.|+++|..++..+. ++++++++|||+|||+++++++...+.. .+.++||++|+++|+.|+++.+.++....+.
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~-----~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~ 81 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh-----cCCcEEEEcCchHHHHHHHHHHHHhhccccc
Confidence 368999999998865 6789999999999999998888776642 2457999999999999999999999887788
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.+....++.........+.. ++|+++||+.+...+... .+.++++++||+||||++........+...........++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~-~~i~i~t~~~~~~~~~~~-~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 159 (200)
T d1wp9a1 82 KIVALTGEKSPEERSKAWAR-AKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (200)
T ss_dssp GEEEECSCSCHHHHHHHHHH-CSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred ceeeeecccchhHHHHhhhc-ccccccccchhHHHHhhh-hhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcE
Confidence 88888888777666555544 489999999999888764 5678899999999999987766444444444445567899
Q ss_pred EEEeecCchhHHHH
Q psy3143 272 MLFSATMTDAVNDL 285 (337)
Q Consensus 272 i~~SAT~~~~~~~~ 285 (337)
++||||++.....+
T Consensus 160 l~~SATp~~~~~~~ 173 (200)
T d1wp9a1 160 IGLTASPGSTPEKI 173 (200)
T ss_dssp EEEESCSCSSHHHH
T ss_pred EEEEecCCCcHHHH
Confidence 99999986654443
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=5e-20 Score=154.68 Aligned_cols=176 Identities=24% Similarity=0.207 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHHh----CCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVAL----LGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..+....+.+...-...+|+-|.+++..+. +++ +.+++|.||||||.+|+..++..+. .+.++++++|
T Consensus 39 ~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~------~g~qv~~l~P 112 (233)
T d2eyqa3 39 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVP 112 (233)
T ss_dssp CCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECS
T ss_pred CCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH------cCCceEEEcc
Confidence 345677777777666778999999998764 333 7899999999999999999988883 5778999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|..|+.|.+..++++....+..+.++++......... ...+.++|+|||-..+. . .+.++++.+||+||-
T Consensus 113 t~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~----~--~~~f~~LgLiIiDEe 186 (233)
T d2eyqa3 113 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIVDEE 186 (233)
T ss_dssp SHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEEESG
T ss_pred HHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc----c--CCccccccceeeech
Confidence 9999999999999998888999999999887665443 33456899999954333 2 556899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
|+.. + .+- ..++....+..++++|||+.+.-..++...
T Consensus 187 H~fg---~-kQ~-~~l~~~~~~~~~l~~SATPiprtl~~~~~g 224 (233)
T d2eyqa3 187 HRFG---V-RHK-ERIKAMRANVDILTLTATPIPRTLNMAMSG 224 (233)
T ss_dssp GGSC---H-HHH-HHHHHHHTTSEEEEEESSCCCHHHHHHHTT
T ss_pred hhhh---h-HHH-HHHHhhCCCCCEEEEecchhHHHHHHHHHh
Confidence 9743 2 122 223344557889999999988877666543
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=9.2e-20 Score=155.93 Aligned_cols=173 Identities=20% Similarity=0.180 Sum_probs=130.6
Q ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhC----C--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 99 SRPLLKAIGALNYIYPTPIQAATIPVALL----G--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 99 ~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~----~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
...+.+.+.+.--..+|.-|.+|+..+.. + .+.+++|.||||||.+|+..++..+. .+.++++++||.
T Consensus 69 ~~~l~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~------~g~q~~~m~Pt~ 142 (264)
T d1gm5a3 69 EGKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------AGFQTAFMVPTS 142 (264)
T ss_dssp CTHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------HTSCEEEECSCH
T ss_pred ChHHHHHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHh------cccceeEEeehH
Confidence 34555555444344689999999988753 3 37899999999999999999988874 366899999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
.||.|.+..++.+....++.+..++|+.........+ .+.++|+|||-.-+.. .+.++++.+||+||-|+
T Consensus 143 ~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~------~~~f~~LglviiDEqH~ 216 (264)
T d1gm5a3 143 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHR 216 (264)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCC
T ss_pred hhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC------CCCccccceeeeccccc
Confidence 9999999999999988899999999998776654444 3568999999654433 45688999999999998
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHh
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 288 (337)
..-.. +..+....+...+++||||+.+.-..++..
T Consensus 217 fgv~Q-----r~~l~~~~~~~~~l~~SATPiprtl~~~~~ 251 (264)
T d1gm5a3 217 FGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALAFY 251 (264)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHHHT
T ss_pred cchhh-----HHHHHHhCcCCCEEEEECCCCHHHHHHHHc
Confidence 54222 112222345678999999988776665543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.82 E-value=8.8e-21 Score=167.82 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=97.8
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
+..++++++.||||||||++|+++++..... .+.++||++||++||.|+++.++.+..... ...
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-----~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~----~~~------- 69 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-----RGLRTLILAPTRVVAAEMEEALRGLPIRYQ----TPA------- 69 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----HTCCEEEEESSHHHHHHHHHHTTTSCCBCC----C---------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-----cCCEEEEEccHHHHHHHHHHHHhcCCccee----eeE-------
Confidence 3578899999999999999998888876653 256899999999999999887765432111 000
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
..........|+++||+.|..++.. ...+.++++||+||||++...++. ..+..+ ......|++++|||++...
T Consensus 70 ~~~~~~~~~~i~~~t~~~l~~~~~~--~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~--~~~~~~~~v~~SAT~~~~~ 145 (305)
T d2bmfa2 70 IRAEHTGREIVDLMCHATFTMRLLS--PIRVPNYNLIIMDEAHFTDPASIAARGYISTR--VEMGEAAGIFMTATPPGSR 145 (305)
T ss_dssp ------CCCSEEEEEHHHHHHHHTS--SSCCCCCSEEEEESTTCCSHHHHHHHHHHHHH--HHHTSCEEEEECSSCTTCC
T ss_pred EeecccCccccccCCcHHHHHHHhc--CccccceeEEEeeeeeecchhhHHHHHHHHHh--hccccceEEEeecCCCcce
Confidence 0112234458999999999887755 445789999999999998765532 222222 1245789999999998653
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.79 E-value=1.3e-19 Score=158.09 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-.|.++|..|+..++.++..++.+|||+|||++....+..... . .+.++|||+|+++|+.|+.+.+..++.....
T Consensus 112 ~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~-~----~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~ 186 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-N----YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-H----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred cccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhh-c----ccceEEEEEcCchhHHHHHHHHHHhhccccc
Confidence 3589999999999999999999999999999986554433322 1 2458999999999999999999988755555
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.+....+|.... .......+|+|+|+..+.... ...+.++++||+||||++-. ..+..++..+.+..-.
T Consensus 187 ~~~~~~~g~~~~---~~~~~~~~i~i~t~qs~~~~~----~~~~~~f~~VIvDEaH~~~a----~~~~~il~~~~~~~~r 255 (282)
T d1rifa_ 187 MIKKIGGGASKD---DKYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (282)
T ss_dssp GEEECSTTCSST---TCCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEE
T ss_pred cceeecceeccc---ccccccceEEEEeeehhhhhc----ccccCCCCEEEEECCCCCCc----hhHHHHHHhccCCCeE
Confidence 556555554321 112234589999987765432 22367899999999998753 3445566555444445
Q ss_pred EEEeecCchh
Q psy3143 272 MLFSATMTDA 281 (337)
Q Consensus 272 i~~SAT~~~~ 281 (337)
++||||++..
T Consensus 256 lGlTaT~~~~ 265 (282)
T d1rifa_ 256 FGLSGSLRDG 265 (282)
T ss_dssp EEECSSCCTT
T ss_pred EEEEeecCCC
Confidence 8999998754
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.78 E-value=9.3e-20 Score=142.07 Aligned_cols=134 Identities=22% Similarity=0.166 Sum_probs=91.9
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
..|+++++++|||+|||.+++..++..... .+.++++++|++.++.|..+.+... ...+....+..
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-----~~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~~~----- 70 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-----RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSA----- 70 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCC-----
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHhhh-----cCceeeeeecchhHHHHHHHHhhhh----hhhhccccccc-----
Confidence 468899999999999999887776666542 3568999999999999987765432 22222111110
Q ss_pred HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH--HHHHHHHHcCCCCeEEEEeecCc
Q psy3143 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS--QMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~--~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
.......+.++|...+...... ...+.++++||+||||.+...++.. .+..+. ...+.++|+||||+|
T Consensus 71 --~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~--~~~~~~~l~lTATPp 140 (140)
T d1yksa1 71 --HGSGREVIDAMCHATLTYRMLE--PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA--RANESATILMTATPP 140 (140)
T ss_dssp --CCCSSCCEEEEEHHHHHHHHTS--SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH--HTTSCEEEEECSSCT
T ss_pred --ccccccchhhhhHHHHHHHHhc--cccccceeEEEEccccccChhhHHHHHHHHHHh--hCCCCCEEEEEcCCC
Confidence 0112236888888888776554 5568899999999999875544322 222222 245789999999987
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=2e-18 Score=143.93 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=100.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.++++|.+++..++.++..++++|||+|||++++..+ ..+ +.++||++|++.|+.|+.+.+..+.. ..
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~--------~~~~Liv~p~~~L~~q~~~~~~~~~~---~~ 137 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI-NEL--------STPTLIVVPTLALAEQWKERLGIFGE---EY 137 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHH-HHS--------CSCEEEEESSHHHHHHHHHHHGGGCG---GG
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHH-HHh--------cCceeEEEcccchHHHHHHHHHhhcc---cc
Confidence 5799999999999999999999999999999865443 333 45799999999999999888876543 33
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
+....|+.. ...+|+|+|...+...... ....+++||+||||++....| ..++...+ ....+
T Consensus 138 ~~~~~~~~~---------~~~~i~i~t~~~~~~~~~~----~~~~~~lvIiDEaH~~~a~~~----~~i~~~~~-~~~~l 199 (206)
T d2fz4a1 138 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APFRL 199 (206)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSEEE
T ss_pred hhhcccccc---------cccccccceehhhhhhhHh----hCCcCCEEEEECCeeCCcHHH----HHHHhccC-CCcEE
Confidence 444444322 3347999999988765543 145689999999999865444 34444443 34568
Q ss_pred EEeecC
Q psy3143 273 LFSATM 278 (337)
Q Consensus 273 ~~SAT~ 278 (337)
+||||+
T Consensus 200 gLTATl 205 (206)
T d2fz4a1 200 GLTATF 205 (206)
T ss_dssp EEEESC
T ss_pred EEecCC
Confidence 999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.71 E-value=1.3e-17 Score=129.62 Aligned_cols=127 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
.+..++.+|||||||+.+...+.+ .+.+++|++|++.|+.|+.+.+...... ......++...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~---------~~~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~----- 70 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAA---------QGYKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVRTI----- 70 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHT---------TTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSCEE-----
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH---------cCCcEEEEcChHHHHHHHHHHHHHHhhc---ccccccccccc-----
Confidence 457899999999999865433221 3668999999999999999888875432 22333333221
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC--CCCeEEEEeecC
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS--RTRQTMLFSATM 278 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~--~~~q~i~~SAT~ 278 (337)
.....++++|.+.+.... ...+.++++||+||+|++.... ...+..+++.+. ...+++++|||.
T Consensus 71 --~~~~~~~~~~~~~~~~~~----~~~~~~~~~vIiDE~H~~~~~~-~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 --TTGSPITYSTYGKFLADG----GCSGGAYDIIICDECHSTDATS-ILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp --CCCCSEEEEEHHHHHHTT----GGGGCCCSEEEEETTTCCSHHH-HHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred --ccccceEEEeeeeecccc----chhhhcCCEEEEecccccCHHH-HHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 123479999988776543 3347899999999999864332 234455555543 456789999994
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.27 E-value=1.7e-10 Score=100.66 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=99.7
Q ss_pred CChHHHHHHHHHHh---------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVAL---------LGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.+.|+|..++..+. .+..+|++-.+|.|||++.+..+...+...... ....++|||+|.. |..|..+.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch-hhHHHHHHH
Confidence 46899999998653 345689999999999987654333333222211 1235799999975 778888888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHH---Hh-----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESV---LR-----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~---~~-----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~ 254 (337)
.++.... ..+..++++......... .. ...+++|+|...+..... .+.-..+++||+||+|.+-..+-
T Consensus 134 ~k~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~---~l~~~~~~~vI~DEaH~ikn~~s 209 (298)
T d1z3ix2 134 GKWLGGR-VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSDN 209 (298)
T ss_dssp HHHHGGG-CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTCH
T ss_pred HhhcCCc-eeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchh---cccccceeeeecccccccccccc
Confidence 8766442 334445555443322211 11 234799999888876443 23334678999999999865441
Q ss_pred HHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 255 ASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 255 ~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
........+. ....+++|||+-.
T Consensus 210 --~~~~a~~~l~-~~~rllLTGTPi~ 232 (298)
T d1z3ix2 210 --QTYLALNSMN-AQRRVLISGTPIQ 232 (298)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSG
T ss_pred --hhhhhhhccc-cceeeeecchHHh
Confidence 2222222333 3456889999754
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.10 E-value=1.3e-09 Score=90.98 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=122.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
.+|+++|...--.+..| -|....||-|||++..+|++-..+ .|..|=||+.+--||..=..++..+..++|+
T Consensus 79 ~RhyDVQLiGgi~L~~G--~iaem~TGEGKTL~a~l~a~l~al------~g~~vhvvTvNdyLA~RDae~m~~iy~~lGl 150 (273)
T d1tf5a3 79 MFPFKVQLMGGVALHDG--NIAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGL 150 (273)
T ss_dssp CCCCHHHHHHHHHHHTT--SEEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEehhHHHHHHHHHhh--hheeecCCCcchhHHHHHHHHHHh------cCCCceEEecCccccchhhhHHhHHHHHcCC
Confidence 46788887766666655 588999999999999888876654 3556889999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCCCccEEEEecccccc-ccc-----------
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLSDIEVLVLDEADRML-DEH----------- 253 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~~~~iViDEad~l~-~~~----------- 253 (337)
.+++...+.........+. +||+++|..-+ .++|+.+- ....+.+.+.|+||+|.++ +..
T Consensus 151 svg~~~~~~~~~~r~~~Y~--~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~ 228 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYA--ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSM 228 (273)
T ss_dssp CEEECCTTSCHHHHHHHHH--SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEE
T ss_pred CccccccccCHHHHHHHhh--CCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEeccCcc
Confidence 9999988777666555554 49999999866 34554321 2236779999999999865 211
Q ss_pred -HHH-HHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhC
Q psy3143 254 -FAS-QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSL 290 (337)
Q Consensus 254 -~~~-~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 290 (337)
... .++.+++ .-.++.+|+.|...+..++...|-
T Consensus 229 ~~a~it~q~~f~---~y~~l~gmtgta~~~~~e~~~iy~ 264 (273)
T d1tf5a3 229 TLATITFQNYFR---MYEKLAGMTGTAKTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEHHHHHT---TSSEEEEEESCCGGGHHHHHHHHC
T ss_pred chhhhhHHHHHH---HHHHHhCCccccHHHHHHHHhccC
Confidence 000 1223333 345889999999888888777664
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.94 E-value=1.3e-09 Score=91.21 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+.++|.+++..+. .+..+|++-++|.|||+..+..+.... ... ...++|||+|. .+..|....+..+...
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~-~~~---~~~~~LIv~p~-~l~~~W~~e~~~~~~~ 86 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KEN---ELTPSLVICPL-SVLKNWEEELSKFAPH 86 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTT---CCSSEEEEECS-TTHHHHHHHHHHHCTT
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhh-hcc---cccccceecch-hhhhHHHHHHHhhccc
Confidence 46899999997653 355789999999999998755443333 222 24569999995 5667777777766543
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
..+....+.... ......+|+++|.+.+..... +.--.+.+||+||||.+-...- ........+. .
T Consensus 87 --~~~~~~~~~~~~-----~~~~~~~vvi~~~~~~~~~~~----l~~~~~~~vI~DEah~~k~~~s--~~~~~~~~l~-a 152 (230)
T d1z63a1 87 --LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 152 (230)
T ss_dssp --SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred --ccceeeccccch-----hhccCcCEEEeeHHHHHhHHH----HhcccceEEEEEhhhcccccch--hhhhhhhhhc-c
Confidence 233332222111 111235899999887754321 1123578899999998865431 1222233333 3
Q ss_pred CeEEEEeecCch-hHHHH
Q psy3143 269 RQTMLFSATMTD-AVNDL 285 (337)
Q Consensus 269 ~q~i~~SAT~~~-~~~~~ 285 (337)
...+++|||+-. ...++
T Consensus 153 ~~r~~LTgTPi~n~~~dl 170 (230)
T d1z63a1 153 KYRIALTGTPIENKVDDL 170 (230)
T ss_dssp EEEEEECSSCSTTCHHHH
T ss_pred ceEEEEecchHHhHHHHH
Confidence 346888999753 34443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=1.6e-07 Score=83.19 Aligned_cols=144 Identities=20% Similarity=0.188 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
......|..|+..++.++-++|+||+|+|||..... ++..+... ....+.++++++||...|..+.+.+.........
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~-~l~~l~~~-~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~ 224 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQM-ADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 224 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHH-HHHHHHHT-CSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehHHH-HHHHHHHH-HhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCc
Confidence 345678999999999999999999999999987532 22222211 1224678999999999888877665543322111
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHH------HhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDH------LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~------l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
....... ...-..|..+++.. +.. .......++++|||||-++. ...+..++..+
T Consensus 225 ~~~~~~~--------------~~~~~~t~~~ll~~~~~~~~~~~-~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~~ 285 (359)
T d1w36d1 225 TDEQKKR--------------IPEDASTLHRLLGAQPGSQRLRH-HAGNPLHLDVLVVDEASMID----LPMMSRLIDAL 285 (359)
T ss_dssp CSCCCCS--------------CSCCCBTTTSCC------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTC
T ss_pred hhhhhhh--------------hhhhhhHHHHHHhhhhcchHHHH-hhhcccccceeeehhhhccC----HHHHHHHHHHh
Confidence 0000000 00001111111110 111 12234568999999999754 34566777888
Q ss_pred CCCCeEEEEee
Q psy3143 266 SRTRQTMLFSA 276 (337)
Q Consensus 266 ~~~~q~i~~SA 276 (337)
+...++|++.=
T Consensus 286 ~~~~~lILvGD 296 (359)
T d1w36d1 286 PDHARVIFLGD 296 (359)
T ss_dssp CTTCEEEEEEC
T ss_pred cCCCEEEEECC
Confidence 88889988873
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.90 E-value=7e-06 Score=70.43 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
+++|-|.+|+.. ...+++|.|+.|||||.+.+.-+...+.... ....++||+++|+.+|..+...+..+.
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~--~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--YQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC--CChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 368899999964 3467999999999999886544433332111 234579999999999999888777654
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.71 E-value=4.7e-05 Score=65.57 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... .....+++++++|+.++..+...+....
T Consensus 12 L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~--~~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcC--CCCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 68899999975 356799999999999998765554444321 1234589999999999999988776643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00032 Score=56.39 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=28.1
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 284 (337)
....+++||||||.|.... ...+..++..-+.+..+| |.++-+..+..
T Consensus 106 ~~~~kviIide~d~l~~~a-~n~Llk~lEep~~~~~fI-l~t~~~~~ll~ 153 (207)
T d1a5ta2 106 LGGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFF-LATREPERLLA 153 (207)
T ss_dssp TSSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEE-EEESCGGGSCH
T ss_pred cCccceEEechhhhhhhhh-hHHHHHHHHhhcccceee-eeecChhhhhh
Confidence 4567899999999987543 344444555444444444 44444443333
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.32 E-value=0.0019 Score=52.12 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 234 SLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 234 ~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
.....+++|+||+|.|.... ...+...+...+..+.+++.+....
T Consensus 98 ~~~~~kviiiDe~d~~~~~~-~~~ll~~~e~~~~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 98 PPGKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQSN 142 (224)
T ss_dssp CTTCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CCcceEEEEEecccccchhH-HHHHhhhccccccceeeeeccCchh
Confidence 34567899999999987654 3344445555566666666655543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.31 E-value=0.002 Score=51.48 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=63.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
++++||||+|||+...-.+.... .+ +.++.+++ ..|.-|.++ ++.+++..++.+...........-.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~-~~-----g~kV~lit~Dt~R~gA~eQ---L~~~a~~l~v~~~~~~~~~~~~~~~-- 81 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK-GK-----GRRPLLVAADTQRPAAREQ---LRLLGEKVGVPVLEVMDGESPESIR-- 81 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH-HT-----TCCEEEEECCSSCHHHHHH---HHHHHHHHTCCEEECCTTCCHHHHH--
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HC-----CCcEEEEecccccchHHHH---HHHHHHhcCCccccccccchhhHHH--
Confidence 45799999999987654433322 11 33455554 355555543 3334444455555544433322110
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
..... ...+.+.++|++|=|=+.... .....+..+.+..++..-+++++|+...+....+.
T Consensus 82 ----------------~~~~~--~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~ 143 (207)
T d1ls1a2 82 ----------------RRVEE--KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 143 (207)
T ss_dssp ----------------HHHHH--HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred ----------------HHHHH--HHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHH
Confidence 00000 001223445555555543322 23455555655566555666777777666544444
Q ss_pred h
Q psy3143 288 V 288 (337)
Q Consensus 288 ~ 288 (337)
.
T Consensus 144 ~ 144 (207)
T d1ls1a2 144 A 144 (207)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.31 E-value=0.00071 Score=54.56 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=27.4
Q ss_pred CccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCch
Q psy3143 237 DIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTD 280 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~ 280 (337)
..++|+||++|.+.... +...+..++..+ ....++|+.|...|.
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 46899999999987543 445555555444 345565554444443
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=0.00091 Score=54.42 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=43.3
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~ 315 (337)
...+++|+||+|.+....+ ..+..++...+..+.+++.+.....-+..+...+ . -+.+
T Consensus 107 ~~~~viiiDe~d~l~~~~~-~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~----~-----------------~i~f 164 (237)
T d1sxjd2 107 PPYKIIILDEADSMTADAQ-SALRRTMETYSGVTRFCLICNYVTRIIDPLASQC----S-----------------KFRF 164 (237)
T ss_dssp CSCEEEEETTGGGSCHHHH-HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS----E-----------------EEEC
T ss_pred cCceEEEEecccccCHHHH-HHHhhccccccccccccccccccccccccccchh----h-----------------hhcc
Confidence 3467899999998876543 3444455555555555554444333333333221 1 2345
Q ss_pred cCcchhhHHHHHHHhhhcCC
Q psy3143 316 SNIDEVRLYNVLGLMLLREN 335 (337)
Q Consensus 316 ~~~~~~~~~~~L~~ll~~~~ 335 (337)
..-...+...+|+.++.+++
T Consensus 165 ~~~~~~~~~~~L~~i~~~e~ 184 (237)
T d1sxjd2 165 KALDASNAIDRLRFISEQEN 184 (237)
T ss_dssp CCCCHHHHHHHHHHHHHTTT
T ss_pred ccccccccchhhhhhhhhhc
Confidence 55555666777777665543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=0.001 Score=53.90 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEE
Q psy3143 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~ 274 (337)
......+++|+||+|.+.... ...+..++...+..+.+++.
T Consensus 95 ~~~~~~kiiiiDe~d~~~~~~-~~~Ll~~le~~~~~~~~~~~ 135 (227)
T d1sxjc2 95 IFSKGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVL 135 (227)
T ss_dssp SSSCSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEE
T ss_pred ccCCCeEEEEEeccccchhhH-HHHHHHHhhhcccceeeccc
Confidence 334566799999999886554 34455555555555544443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=0.0037 Score=51.08 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=32.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
..|+++-....+.+.|...--.. ....+++++||+|+|||..+.. +...+
T Consensus 8 ~~~~diig~~~~~~~L~~~~~~~------------~~~~~lll~Gp~G~GKTt~~~~-la~~l 57 (252)
T d1sxje2 8 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRCMA-LLESI 57 (252)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHHHT-HHHHH
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCCeEEEECCCCCCHHHHHHH-HHHhh
Confidence 46788877777777775431100 1223689999999999987644 33444
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.0019 Score=51.70 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=34.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc-CC-HHHHHHHHHHHHHHhhccCcEEEEEeCCcc
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV-PT-RELGVQVYQVTRQLAQFTSVEVALSVGGLE 201 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~-Pt-~~La~q~~~~~~~l~~~~~~~v~~~~~~~~ 201 (337)
++++||||+|||....-.+. ++. .. +.++.+++ -| |.-|.. .++.+++..++.+.....+..
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~-~~----g~kV~lit~Dt~R~gA~e---QL~~~a~~l~v~~~~~~~~~d 75 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFE-QQ----GKSVMLAAGDTFRAAAVE---QLQVWGQRNNIPVIAQHTGAD 75 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHH-TT----TCCEEEECCCTTCHHHHH---HHHHHHHHTTCCEECCSTTCC
T ss_pred EEEECCCCCCHHHHHHHHHH-HHH-HC----CCcEEEEecccccccchh---hhhhhhhhcCCcccccccCCC
Confidence 55799999999998654433 332 11 23444444 33 444433 444555555666655444443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.01 E-value=0.0022 Score=51.14 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=32.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc-C-CHHHHHHHHHHHHHHhhccCcEEEEEe
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV-P-TRELGVQVYQVTRQLAQFTSVEVALSV 197 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~-P-t~~La~q~~~~~~~l~~~~~~~v~~~~ 197 (337)
++-++++||||+|||....-.+. ++. .. +.++.+++ - .|.-|.++.+ .+++..++.+....
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~-~~~-~~----g~kV~lit~Dt~R~gA~eQL~---~~a~~l~i~~~~~~ 68 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR-YYQ-NL----GKKVMFCAGDTFRAAGGTQLS---EWGKRLSIPVIQGP 68 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH-HHH-TT----TCCEEEECCCCSSTTHHHHHH---HHHHHHTCCEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHH-HC----CCcEEEEEeccccccchhhHh---hcccccCceEEecc
Confidence 34567899999999998654333 332 11 23454444 3 3555544333 33333345544433
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.0018 Score=51.38 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=62.7
Q ss_pred HHHHHHHHhC---CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH--HHHHHHHHHHHhhccCcE
Q psy3143 118 QAATIPVALL---GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL--GVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 118 Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L--a~q~~~~~~~l~~~~~~~ 192 (337)
|.+.+..+.. +..++++||.|+|||..+.... ..+.... ...+-++++.|...- ..|+.
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~--~~h~D~~~i~~~~~~I~Id~IR------------- 65 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFP--PKASDVLEIDPEGENIGIDDIR------------- 65 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSC--CCTTTEEEECCSSSCBCHHHHH-------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhccc--cCCCCEEEEeCCcCCCCHHHHH-------------
Confidence 4455555543 3479999999999998765433 3332221 123457777664110 11111
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
.+.+.+... ...+..+++||||||.|.... ...+..++..-+.+..++
T Consensus 66 -----------------------------~i~~~~~~~--~~~~~~KviIId~ad~l~~~a-qNaLLK~LEEPp~~t~fi 113 (198)
T d2gnoa2 66 -----------------------------TIKDFLNYS--PELYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIV 113 (198)
T ss_dssp -----------------------------HHHHHHTSC--CSSSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEE
T ss_pred -----------------------------HHHHHHhhC--cccCCCEEEEEeCccccchhh-hhHHHHHHhCCCCCceee
Confidence 122233221 124667999999999986544 345555666555666666
Q ss_pred EEeec
Q psy3143 273 LFSAT 277 (337)
Q Consensus 273 ~~SAT 277 (337)
+.|..
T Consensus 114 Lit~~ 118 (198)
T d2gnoa2 114 LNTRR 118 (198)
T ss_dssp EEESC
T ss_pred eccCC
Confidence 65544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0043 Score=49.60 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=34.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC-CHHHHHHHHHHHHHHhhccCcEEEEEeCCc
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP-TRELGVQVYQVTRQLAQFTSVEVALSVGGL 200 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P-t~~La~q~~~~~~~l~~~~~~~v~~~~~~~ 200 (337)
++++||||+|||+...-.+.+ +..+. ..-+||.+- .|.-|.. .++.+++..++.+.....+.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~-~~~~~----~kV~lit~Dt~R~gA~e---QL~~~a~~l~i~~~~~~~~~ 76 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKM-FVDEG----KSVVLAAADTFRAAAIE---QLKIWGERVGATVISHSEGA 76 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HHHTT----CCEEEEEECTTCHHHHH---HHHHHHHHHTCEEECCSTTC
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHCC----CceEEEeecccccchhH---HHHHHhhhcCccccccCCCC
Confidence 567999999999986544433 32221 223444444 4444433 34455555566665544433
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.012 Score=47.85 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=30.8
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCC---CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR---DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
.+|.++-....+.+.|.. .+.+++ .++++||+|+|||..+.+ +...+.
T Consensus 9 ~~~~dlig~~~~~~~L~~---------------~i~~~~~~~~~Ll~Gp~G~GKtt~a~~-~~~~l~ 59 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALAN---------------GLSLGRIHHAYLFSGTRGVGKTSIARL-LAKGLN 59 (239)
T ss_dssp SSGGGSCSCHHHHHHHHH---------------HHHTTCCCSEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CCHHHccChHHHHHHHHH---------------HHHcCCCCeeEEEECCCCCcHHHHHHH-HHHHhc
Confidence 467777666666665532 223333 489999999999987654 444443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.95 E-value=0.022 Score=45.67 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=27.8
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHH
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+|.++-....+.+.|... ++ -....+++++||+|+|||+.+-.
T Consensus 21 ~~~~diig~~~~~~~l~~~-------i~------~~~~~~lll~Gp~G~GKTtla~~ 64 (231)
T d1iqpa2 21 QRLDDIVGQEHIVKRLKHY-------VK------TGSMPHLLFAGPPGVGKTTAALA 64 (231)
T ss_dssp CSTTTCCSCHHHHHHHHHH-------HH------HTCCCEEEEESCTTSSHHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH-------HH------cCCCCeEEEECCCCCcHHHHHHH
Confidence 3577776666666655431 00 01224799999999999987543
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0024 Score=50.77 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.+|.||+|..+-...+...+.++. .+.++.+++|..+..... .+.....+|+|||+ .+.. .++..
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~--p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEv--GiDvp 100 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET--GIDIP 100 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGG--GSCCT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhC--CceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhh--ccCCC
Confidence 47889999999988888888877754 568899999998776654 34456789999995 3444 67899
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcC
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCS 266 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~ 266 (337)
+..++||..|+++. ..++..+.....
T Consensus 101 nA~~iiI~~a~rfG----LaQLhQLRGRVG 126 (211)
T d2eyqa5 101 TANTIIIERADHFG----LAQLHQLRGRVG 126 (211)
T ss_dssp TEEEEEETTTTSSC----HHHHHHHHTTCC
T ss_pred CCcEEEEecchhcc----ccccccccceee
Confidence 99999999999854 455666655543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.53 E-value=0.014 Score=46.45 Aligned_cols=59 Identities=27% Similarity=0.155 Sum_probs=27.0
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE-EEEcC-CHHHHHHHHHHHHHHhhccCcEEEEEeC
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV-LVLVP-TRELGVQVYQVTRQLAQFTSVEVALSVG 198 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~-lil~P-t~~La~q~~~~~~~l~~~~~~~v~~~~~ 198 (337)
++++||||+|||....-.+. ++..+ +.++ ||.+- .|.-|.. .++.+++..++.+.....
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~~-----g~kV~lit~Dt~R~ga~e---QL~~~a~~l~v~~~~~~~ 75 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKKK-----GFKVGLVGADVYRPAALE---QLQQLGQQIGVPVYGEPG 75 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHHT-----TCCEEEEECCCSSHHHHH---HHHHHHHHHTCCEECCTT
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC-----CCceEEEEeeccccchhH---HHHHhccccCcceeeccc
Confidence 55789999999998654333 23211 2334 44443 3444433 344444444555544433
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.037 Score=42.40 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=78.2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.|+|+.-|..+...|... ++.+..++|+........ +.....+|||+|. +.. ..++..
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~----Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~------v~~-~GiDip 98 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLR-EGLDIP 98 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCC-TTCCCT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhc----CCceEEEecccchHHHHHHHHHHHCCCeEEEEeee------eee-eeccCC
Confidence 3668999999999999888877764 589999999988665543 3446789999993 333 378899
Q ss_pred CccEEEEeccccccc-ccHHHHHHHHHHHcC-CCCeEEEEeecCchhHHHHH
Q psy3143 237 DIEVLVLDEADRMLD-EHFASQMKEIIRLCS-RTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 237 ~~~~iViDEad~l~~-~~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~~~~~~ 286 (337)
++++||+=.++.... .+....+..+-+... .....+++.......+.+++
T Consensus 99 ~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 99 EVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp TEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHH
T ss_pred CCcEEEEeccccccccchhHHHHHHhhhhhhcCCCeeEEeecCCCHHHHHHH
Confidence 999999977775332 223334444433332 23455666655666655544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.41 E-value=0.042 Score=44.76 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=29.3
Q ss_pred CccccCCCCHHHHHHHHhC--CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL--NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~--~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+++-...+.+.|... -+..|..++..- +...+.+++.||+|+|||+..
T Consensus 6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g---~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEecCCCCChhHHH
Confidence 4688887667666665321 011111111100 011246999999999999865
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.38 E-value=0.0028 Score=56.08 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=45.6
Q ss_pred hHHHHHHHHHH----hCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 115 TPIQAATIPVA----LLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 115 ~~~Q~~~i~~~----~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+--|-+||..+ ..| +..++.|-||||||+... .++... +..+|||+|+..+|.|+++.++.+..
T Consensus 13 ~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~--------~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 13 QGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV--------NKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH--------TCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 33444444433 344 578899999999997653 233333 33599999999999999999998763
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=96.03 E-value=0.012 Score=43.57 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=52.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 210 (337)
-++.||..||||.-.+-- ++.... .+.+++++-|...- ++.+ .+....| .
T Consensus 5 ~~i~GpMfsGKTteLi~~-~~~~~~-----~~~kv~~ikp~~D~------------R~~~-~i~s~~g-~---------- 54 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRR-LHRLEY-----ADVKYLVFKPKIDT------------RSIR-NIQSRTG-T---------- 54 (139)
T ss_dssp EEEECSTTSCHHHHHHHH-HHHHHH-----TTCCEEEEEECCCG------------GGCS-SCCCCCC-C----------
T ss_pred EEEEccccCHHHHHHHHH-HHHHHH-----CCCcEEEEEEcccc------------cccc-eEEcccC-c----------
Confidence 478999999999765443 333321 35579999987442 1111 1111111 1
Q ss_pred cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 211 ~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
....+.+.+...+...+... ....++++|.||||+-+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~--~~~~~~dvI~IDE~QFf~ 92 (139)
T d2b8ta1 55 SLPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 92 (139)
T ss_dssp SSCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred eeeeEEeccchhhHHHHHhh--ccccCcCEEEechhhhcc
Confidence 11246666766666666542 224678999999999754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.82 E-value=0.0049 Score=52.72 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHHhCCCCC---ChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 104 KAIGALNYIY---PTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 104 ~~l~~~~~~~---p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
..+...|+.. ..+-+...+.. +..+++++|+|+||||||... -.++..+ ....|++.+--+.||
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i------~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFI------PKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGS------CTTCCEEEEESSCCC
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhc------ccccceeeccchhhh
Confidence 3444444432 33444445544 446779999999999999863 3344333 135578888888887
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.77 E-value=0.021 Score=46.09 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
|.-+++.|++|+|||...+..+.+.+. .+..+++++-.
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~~------~~~~~~~is~e 63 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENACA------NKERAILFAYE 63 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHT------TTCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH------hccccceeecc
Confidence 457889999999999887776666552 35567777643
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=95.76 E-value=0.087 Score=40.54 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=70.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..+...+... ++.+..++|+.+....... .....+|||||. +.. ..++..+
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~----g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd------v~~-rGiDip~ 99 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEA----GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLR-EGLDIPE 99 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC------CCS-SSCCCTT
T ss_pred CCeEEEEeehhhhhHHHHHHHHhC----CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh------HHH-ccCCCCC
Confidence 558999999999988877766654 6899999999987665433 346789999993 323 3788999
Q ss_pred ccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEE
Q psy3143 238 IEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 238 ~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~ 274 (337)
+++||.-.+.... ..++...+.++-+.-......+++
T Consensus 100 v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~ 137 (181)
T d1t5la2 100 VSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIM 137 (181)
T ss_dssp EEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEE
T ss_pred CCEEEEecCCcccccccHHHHHHHHHhhccccCceeEe
Confidence 9999998887632 123444555555544433333333
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.033 Score=43.52 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred EEEEeccccccccc-------HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH---hhCCCCeEEEeCCC
Q psy3143 240 VLVLDEADRMLDEH-------FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS---VSLTRPVRVFVDNN 301 (337)
Q Consensus 240 ~iViDEad~l~~~~-------~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~---~~~~~p~~i~~~~~ 301 (337)
+++|||+|.++..+ ..+.+.-.+. ....|+| .||=+++...++. .+.+....|.+.+.
T Consensus 118 ILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~I--gatT~eey~~~~e~d~aL~rrF~~I~V~Ep 185 (195)
T d1jbka_ 118 ILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCV--GATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp EEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEE--EEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred EEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEE--ecCCHHHHHHHHHcCHHHHhcCCEeecCCC
Confidence 68999999997643 2233333322 2344544 4555666555443 24455677776554
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=95.67 E-value=0.011 Score=44.70 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=77.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccH--HHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV--KVQESV 208 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~--~~~~~~ 208 (337)
+.|....|-|||.+++=-++..+ +.+.||+++.=.+.-... .. ..+....++.+...-.+... ......
T Consensus 5 i~vytG~GKGKTTAAlG~alRA~------G~G~rV~ivQFlKg~~~~--ge-~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 75 (157)
T d1g5ta_ 5 IIVFTGNGKGKTTAAFGTAARAV------GHGKNVGVVQFIKGTWPN--GE-RNLLEPHGVEFQVMATGFTWETQNREAD 75 (157)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHH------HTTCCEEEEESSCCSSCC--HH-HHHHGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHh------cCCCEEEEEEEecCCccc--ch-hhhhcccCcEEEEecCCCcccCCChHHH
Confidence 55677889999999987777776 457789998733311000 00 11112233333322111110 000000
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.. .....+..... .+.-..+++||+||+-..+..++ ...+..+++..|...-+|+..-..|+++.+.+
T Consensus 76 ~~--------~a~~~~~~a~~--~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~A 145 (157)
T d1g5ta_ 76 TA--------ACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 145 (157)
T ss_dssp HH--------HHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred HH--------HHHHHHHHHHH--HhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhc
Confidence 00 01222332222 23345689999999998776663 34666777878888888887777888877765
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 146 D 146 (157)
T d1g5ta_ 146 D 146 (157)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=95.22 E-value=0.0011 Score=51.33 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=24.9
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++++||++...... ...+..+.+.+......++++..
T Consensus 97 ~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~~h 138 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEECC
T ss_pred hcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEEEc
Confidence 3456899999987654332 23344455555555556666654
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.033 Score=40.72 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=25.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
=-+++||..||||.-.+- .++... ..+.+++++-|...
T Consensus 4 L~li~GpMfsGKTt~Li~-~~~~~~-----~~g~~v~~ikp~~D 41 (133)
T d1xbta1 4 IQVILGPMFSGKSTELMR-RVRRFQ-----IAQYKCLVIKYAKD 41 (133)
T ss_dssp EEEEECCTTSCHHHHHHH-HHHHHH-----TTTCCEEEEEETTC
T ss_pred EEEEEecccCHHHHHHHH-HHHHHH-----HcCCcEEEEecccc
Confidence 357899999999986443 333332 12556999988743
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.11 Score=39.17 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=55.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
..++||.|.++.-+.++...+... ++.+..++|+.........+ .....|+|||. .+ . ..+++..
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td-----v~-~-rGiDi~~ 95 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-A-RGIDVQQ 95 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-T-TTCCCCS
T ss_pred CCcEEEEEEEEchHHHHHHHHhhc----CceEEEeccCCchhhHHHHHHHHhhcccceeeccc-----cc-c-ccccCCC
Confidence 457999999999999988776654 47888999988776654433 35678999994 23 2 3788999
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
+++||.=+.
T Consensus 96 v~~VI~~d~ 104 (162)
T d1fuka_ 96 VSLVINYDL 104 (162)
T ss_dssp CSEEEESSC
T ss_pred ceEEEEecc
Confidence 999987443
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.14 Score=38.81 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=64.5
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH--
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL-- 209 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-- 209 (337)
++..+....|.. ++..++... .+.++||.|.++.-|..+...+... ++.+..++|+.........+
T Consensus 12 ~v~v~~~~~K~~-~L~~ll~~~-------~~~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~ 79 (168)
T d2j0sa2 12 FVAVEREEWKFD-TLCDLYDTL-------TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKE 79 (168)
T ss_dssp EEEESSTTHHHH-HHHHHHHHH-------TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHH
T ss_pred EEEecChHHHHH-HHHHHHHhC-------CCCceEEEeeeHHHHHHHHHHhhhc----ccchhhhhhhhhHHHHHHHHHH
Confidence 344444455643 344455443 3568999999999999888777764 46778888988776654333
Q ss_pred --hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEe
Q psy3143 210 --RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244 (337)
Q Consensus 210 --~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViD 244 (337)
....+|+|||. .+ . ..+++..+++||.=
T Consensus 80 fk~g~~~iLv~Td-----~~-~-rGiDi~~v~~VIn~ 109 (168)
T d2j0sa2 80 FRSGASRVLISTD-----VW-A-RGLDVPQVSLIINY 109 (168)
T ss_dssp HHHTSSCEEEECG-----GG-S-SSCCCTTEEEEEES
T ss_pred HhcCCccEEeccc-----hh-c-ccccccCcceEEEe
Confidence 35679999994 33 3 37889999998853
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.48 E-value=0.14 Score=44.34 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.|+++.|++|.|||...-
T Consensus 44 ~n~llvG~~GvGKtaiv~ 61 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVE 61 (387)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CCCeEECCCCCCHHHHHH
Confidence 379999999999998653
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.17 Score=38.25 Aligned_cols=75 Identities=7% Similarity=0.096 Sum_probs=56.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.|+|+.-+..+...+... ++.+..++|+.........+ ....+|+|||. .+. ..+++..
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td-----~~~--~Gid~~~ 100 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 100 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCceEEEEeeeehhhHhHHhhhcc----cccccccccccchhhhhhhhhhcccCccccccchh-----Hhh--hccccce
Confidence 568999999999998888877765 57888899988766554433 35679999995 222 3788999
Q ss_pred ccEEEEeccc
Q psy3143 238 IEVLVLDEAD 247 (337)
Q Consensus 238 ~~~iViDEad 247 (337)
++++|.=++.
T Consensus 101 v~~VI~~d~p 110 (171)
T d1s2ma2 101 VNVVINFDFP 110 (171)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEecCCc
Confidence 9998865444
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.43 E-value=0.14 Score=38.01 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=53.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-|.++...+... ++.+..++++......... ......|+|||. .+.. .+++..
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~-----~~~~--Gid~~~ 96 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVND 96 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCSC
T ss_pred CCCEEEEECchHHHHHHHhhhccc----ccccccccccchhhhhhhhhhhhhcccceeeeehh-----HHhh--hhhhcc
Confidence 457999999999999888887764 4788888988766555433 345679999994 2333 677888
Q ss_pred ccEEEE
Q psy3143 238 IEVLVL 243 (337)
Q Consensus 238 ~~~iVi 243 (337)
++++|.
T Consensus 97 v~~Vi~ 102 (155)
T d1hv8a2 97 LNCVIN 102 (155)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 998885
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.42 E-value=0.057 Score=39.77 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
|.=-+++||+.||||.-.+-- ++.... .+.+++++-|...
T Consensus 7 G~l~lI~GpMfSGKTteLi~~-~~~~~~-----~g~~vl~i~~~~D 46 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRR-IRRAKI-----AKQKIQVFKPEID 46 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHH-HHHHHH-----TTCCEEEEEEC--
T ss_pred eeEEEEEeccccHHHHHHHHH-HHHhhh-----cCCcEEEEEeccc
Confidence 444578999999999775443 333321 3557999999744
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.2 Score=39.12 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=53.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+..+..+...+... ++.+..++|+........ +.....+|+|+|. .+ . ..+++.+
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd-----~~-~-~GiD~p~ 98 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-G-MGINKPN 98 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-C-TTTCCTT
T ss_pred CCCEEEEEeeehhhHHhhhhhccC----CceeEEecCCCcHHHHHHHHHHHhcccceEEEecc-----hh-h-hccCCCC
Confidence 457999999999999887777654 478888999887655443 3345679999994 22 2 3788999
Q ss_pred ccEEEE
Q psy3143 238 IEVLVL 243 (337)
Q Consensus 238 ~~~iVi 243 (337)
+++||.
T Consensus 99 v~~VI~ 104 (200)
T d1oywa3 99 VRFVVH 104 (200)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998885
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.15 Score=38.59 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=54.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
..++||.|+++.-+..+...+... +..+..++|+.+.......+ ...+.|+|||. .+ . ..+++..
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~-----~~-~-~Gid~~~ 95 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-G-RGMDIER 95 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-S-TTCCGGG
T ss_pred CCeEEEEEeeeecchhhhhhhccc----cccccccccccchhhhhhhhhhhccccceeeeccc-----cc-c-chhhccc
Confidence 457999999999998888777654 47888999998776554333 35678999993 22 2 3677888
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
+.++|.=..
T Consensus 96 ~~~vi~~~~ 104 (168)
T d1t5ia_ 96 VNIAFNYDM 104 (168)
T ss_dssp CSEEEESSC
T ss_pred chhhhhhhc
Confidence 888876544
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.068 Score=47.39 Aligned_cols=57 Identities=23% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCC------CCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPR------DDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~------~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
...+||.|..|||||.+..-=++..++.... ....-++|+|+=|+..|..+..++..
T Consensus 16 ~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~ 78 (485)
T d1w36b1 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (485)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHH
Confidence 3468999999999998876666665543221 11234699999999988888776654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.64 E-value=0.042 Score=48.20 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.|...+..++... -+|++||||||||+.... ++..+
T Consensus 143 ~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~-~l~~~ 182 (401)
T d1p9ra_ 143 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA-GLQEL 182 (401)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHH-Hhhhh
Confidence 456666666666554 478999999999987543 55555
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=93.63 E-value=0.06 Score=45.01 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+++++|.||+..-+..+...+++. +.+|..++|......+........+|||+|. +... .+++ .+.+|
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~------~~~~-~~~~-~~~~v 103 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEM-GANL-CVERV 103 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS------STTC-CTTC-CCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCeEEEEcCcCcHhHHhhhhcCCcCEEEEec------hhhh-ceec-CceEE
Confidence 567999999999999988888764 4678899998877777777777789999994 3232 5556 46655
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 104 i 104 (299)
T d1yksa2 104 L 104 (299)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.61 E-value=0.019 Score=48.54 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.9
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
..+.++++||||+|||+.+-
T Consensus 48 ~~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998763
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=93.61 E-value=0.062 Score=47.10 Aligned_cols=65 Identities=32% Similarity=0.353 Sum_probs=45.2
Q ss_pred ChHHHHHHHHH----HhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 114 PTPIQAATIPV----ALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 114 p~~~Q~~~i~~----~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
|+--|-+||.. +..|+ .+.+.|.+||+|+++.. .++... +..+|||+|+...|.+++..+..+..
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~--------~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL--------GRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH--------TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 34445445544 44555 46889999999996543 233333 33489999999999999999998763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.045 Score=41.46 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=18.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
|++++.||+|+|||... ..++..+
T Consensus 2 k~v~ItG~~GtGKTtl~-~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLI-HKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHH-HHHHHHH
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHH
Confidence 68999999999999854 3444444
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.31 E-value=0.092 Score=41.95 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
++++++||+|+|||..+-+
T Consensus 36 ~~~L~~GPpGtGKT~lA~~ 54 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHI 54 (238)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4799999999999987644
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.84 E-value=0.032 Score=45.04 Aligned_cols=44 Identities=16% Similarity=-0.028 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|+-++|.|++|+|||...+..+.+.+........+..++++.-
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 78 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEec
Confidence 34578999999999998877666655432222223455666643
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.67 E-value=0.023 Score=50.60 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.0
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
..+|+|+.||||+|||+.+-
T Consensus 48 ~ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred ccccEEEECCCCCCHHHHHH
Confidence 35699999999999998753
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.54 E-value=0.067 Score=46.13 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
.+++++||||+|||..+
T Consensus 69 ~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred cceeeeCCCCccHHHHH
Confidence 47999999999999875
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.069 Score=46.94 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=19.7
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILER 152 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~ 152 (337)
...++++|.|+||||||......+.+.
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~~~ 74 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAYTG 74 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccceEEEEeCCCCcHHHHHHHHHHHH
Confidence 345799999999999998753333333
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.036 Score=44.36 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=26.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.|+-+++.|++|+|||...+-.+.+..........+..++++.
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~ 75 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 75 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEe
Confidence 4567899999999999866554444332222222345667665
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.44 E-value=0.077 Score=38.88 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=48.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.|+|+.-|.+++..|+.. ++.+..++++..... ......+|+|||. .+.+ .++ .++++|
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~~~~~~---~~~~~~~vlvaTd-----~~~~--GiD-~~v~~V 99 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSV---IPTNGDVVVVATD-----ALMT--GFT-GDFDSV 99 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTTCCSCC---CTTSSCEEEEESS-----SSCS--SSC-CCBSEE
T ss_pred CCCEEEEeCcHHHHHHHHHHHhcc----ccchhhhhccchhhh---hhhhhcceeehhH-----HHHh--ccc-cccceE
Confidence 567999999999999998888765 488888998876433 2345678999994 2222 456 567776
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 100 i 100 (138)
T d1jr6a_ 100 I 100 (138)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.037 Score=41.04 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|++++.|++|||||+..-.
T Consensus 2 ~k~I~l~G~~GsGKSTvak~ 21 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGRQ 21 (169)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 36899999999999987644
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.65 E-value=0.048 Score=43.79 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
++++++||+|+|||..+-+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~ 54 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHV 54 (239)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4899999999999977643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.53 E-value=0.038 Score=40.78 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-++++|++|||||+..
T Consensus 4 lIii~G~pGsGKTTla 19 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.19 E-value=0.033 Score=42.08 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.2
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|+-+++.|++|||||+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667889999999999864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.16 E-value=0.047 Score=41.16 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++.|++|||||+..-.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~ 24 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEM 24 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHH
Confidence 45699999999999987633
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.95 E-value=0.062 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.++++.||+|+|||.+.-. +...+
T Consensus 44 ~~lll~GppGtGKT~l~~~-l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRK-LWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999977533 44444
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.86 E-value=0.065 Score=40.16 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
..++++|++|||||+..-.
T Consensus 5 ~~I~i~G~pGsGKTTia~~ 23 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKE 23 (173)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.78 E-value=0.049 Score=40.81 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-++++|++|||||+.+-
T Consensus 4 lI~i~G~~GsGKTTva~ 20 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCK 20 (176)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.11 Score=41.69 Aligned_cols=49 Identities=10% Similarity=-0.046 Sum_probs=31.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
.|+-+++.|++|+|||...+..+.+.............++++.....+.
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR 84 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHH
Confidence 4567899999999999887666655443222222344566666554443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.36 E-value=0.04 Score=41.88 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
-|.+++.|++|+|||+..-
T Consensus 7 ~K~I~i~G~~GsGKTTla~ 25 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVN 25 (192)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3679999999999998754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.078 Score=43.30 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=30.5
Q ss_pred CccccCCCCHHHHHHHHhC--CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGAL--NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~--~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
-+|.+.+-.....+.+... .+..|..+|... +...+.+++.||+|+|||+..-
T Consensus 9 ~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHHH
Confidence 4688888777777666431 011111122111 1123679999999999998753
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=1.6 Score=35.25 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=60.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeEEEEcCCHHHH---------HHHHHHHHHHhhccCcEEEEEe
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRVLVLVPTRELG---------VQVYQVTRQLAQFTSVEVALSV 197 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~lil~Pt~~La---------~q~~~~~~~l~~~~~~~v~~~~ 197 (337)
.++++.|++|.|||....- +...+.... ....+.+++.+-+.+-+| .++...+..+... + .+.++.
T Consensus 40 ~n~lLVG~~GvGKTalv~~-la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~-~-~iIlfi 116 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEG-LAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-T-NSILFI 116 (268)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-S-CEEEEE
T ss_pred CCcEEECCCCCcHHHHHHH-HHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhcc-C-CceEEe
Confidence 4899999999999977544 333332221 111234555555444332 2233333333222 2 223322
Q ss_pred C---------Cc--cHHHHHHHHhc-----CC-CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 198 G---------GL--EVKVQESVLRK-----CP-DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 198 ~---------~~--~~~~~~~~~~~-----~~-~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
. +. +...-...++. .. -|.-|||..+..++...+.+ ...+..|-|+|-+.
T Consensus 117 Deih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al-~rrF~~I~V~Eps~ 183 (268)
T d1r6bx2 117 DEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL-ARRFQKIDITEPSI 183 (268)
T ss_dssp TTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSS-GGGEEEEECCCCCH
T ss_pred cchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHH-HhhhcccccCCCCH
Confidence 1 11 11222333331 12 36678899888877665443 57789999999884
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.74 E-value=0.069 Score=40.12 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.3
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
+.+-++++|++|||||+..-
T Consensus 2 ~~kiI~l~G~~GsGKsTva~ 21 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668899999999998753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=0.09 Score=42.35 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=30.2
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHH-HHHHHH-----HhCCCCEEEEcCCCCchhHHhHH
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQ-AATIPV-----ALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q-~~~i~~-----~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+|.++-..+..++.|...=-. +... ...+.. ....+.++++||+|+|||.+.-.
T Consensus 11 ~~~~dlig~~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~ 71 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNWLAN--WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT--HHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHHh--hhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHH
Confidence 4688888888777766541000 0000 000000 00124699999999999987543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.31 E-value=0.045 Score=41.36 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=16.7
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|.-++++|++|||||+..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667889999999999876
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.21 E-value=0.073 Score=43.28 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.+++.||+|+|||..+-
T Consensus 34 ~ilL~GpPGtGKT~la~ 50 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRS 50 (273)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.19 E-value=0.088 Score=39.48 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
|++++.|++|+|||+..-.
T Consensus 1 k~I~liG~~GsGKsTi~k~ 19 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARA 19 (161)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5789999999999987544
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=89.12 E-value=0.22 Score=40.58 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=28.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
..|.-+++.|+||+|||...+-.+++... ..+.+++++..-
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~-----~~g~~v~~~s~E 73 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAMLE 73 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHHHHHH-----TSCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHhhhh-----hcccceeEeeec
Confidence 34667889999999999766555555432 125568888743
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.82 E-value=0.069 Score=43.35 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||+|+|||...-
T Consensus 42 ~vLL~GppGtGKT~la~ 58 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAA 58 (246)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 69999999999998753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.17 Score=39.19 Aligned_cols=26 Identities=19% Similarity=-0.033 Sum_probs=20.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
|+-+++.||+|+|||...+..+.+..
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45788999999999987666555544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.38 E-value=0.045 Score=44.81 Aligned_cols=18 Identities=39% Similarity=0.349 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++.||+|+|||+..
T Consensus 38 ~~giLL~GppGtGKT~l~ 55 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIA 55 (258)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CceeEEecCCCCCchHHH
Confidence 357999999999999764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=88.13 E-value=0.1 Score=39.01 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+=++++|++|||||+..-.
T Consensus 7 ~iivl~G~~GsGKsT~a~~ 25 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASE 25 (171)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467899999999988644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.05 E-value=0.11 Score=39.85 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
|.++++||+|+|||...
T Consensus 2 rpIvl~GpsG~GK~tl~ 18 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.23 E-value=0.13 Score=39.16 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
=++++|++|||||+.+
T Consensus 16 liil~G~pGsGKST~a 31 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFI 31 (172)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.15 E-value=0.28 Score=38.75 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=21.6
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.|.-+++.|++|+|||...+..+.+.+
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356788999999999988777666655
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.85 E-value=0.15 Score=39.37 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
|.++++||+|||||...
T Consensus 1 rpIvl~GPsGsGK~tl~ 17 (190)
T d1lvga_ 1 RPVVLSGPSGAGKSTLL 17 (190)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999865
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=86.45 E-value=0.2 Score=38.28 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
|-.+++.||+|||||+..-.
T Consensus 3 ~~riil~G~pGSGKsT~a~~ 22 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPK 22 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 45688899999999998754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.44 E-value=0.25 Score=38.83 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||...+-.+.+.+.. .+..++++..
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~-----~~~~~~~~s~ 63 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTF 63 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCcccccc
Confidence 35678899999999997765555544432 1335777654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.94 E-value=0.25 Score=37.11 Aligned_cols=21 Identities=24% Similarity=0.058 Sum_probs=17.0
Q ss_pred CCCEEEEcCCCCchhHHhHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLP 148 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~ 148 (337)
.+.+++.|++|||||+..-+.
T Consensus 2 ~~~Iil~G~~GsGKSTia~~L 22 (170)
T d1e6ca_ 2 TEPIFMVGARGCGMTTVGREL 22 (170)
T ss_dssp CCCEEEESCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 367889999999999876543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.79 E-value=0.2 Score=37.84 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=15.2
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.||+|||||+..-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~ 19 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEK 19 (182)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998644
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.76 E-value=0.2 Score=38.28 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=15.4
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.||+|||||+..-.
T Consensus 5 ~I~i~GppGsGKsT~a~~ 22 (189)
T d1zaka1 5 KVMISGAPASGKGTQCEL 22 (189)
T ss_dssp CEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999987654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.72 E-value=0.18 Score=38.47 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|+=++++||+|+|||...
T Consensus 2 G~iivl~GpsG~GK~tl~ 19 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVV 19 (182)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 667899999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.44 E-value=0.16 Score=38.53 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.4
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|||||+..-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~ 19 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVK 19 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998655
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.088 Score=40.37 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
|.-++++|++|||||+.+-.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~ 38 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMA 38 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34566899999999987643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.11 E-value=0.24 Score=37.56 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=15.2
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.||+|||||+..-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~ 19 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADR 19 (182)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999998644
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.07 E-value=0.2 Score=39.19 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
+|+-++++||+|+|||...-
T Consensus 1 ~G~livi~GPSG~GK~tl~~ 20 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQ 20 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36778999999999998753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.94 E-value=0.2 Score=37.73 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
|-+++.|++|||||+..-
T Consensus 2 kiI~i~G~~GsGKsT~~~ 19 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQ 19 (190)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457899999999998753
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.77 E-value=1.7 Score=33.33 Aligned_cols=75 Identities=24% Similarity=0.196 Sum_probs=47.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc--------------------------CcEEEEEeCCccHHHHHH----HHhc
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT--------------------------SVEVALSVGGLEVKVQES----VLRK 211 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~--------------------------~~~v~~~~~~~~~~~~~~----~~~~ 211 (337)
+..+||.+|||.-|..++..+....... ...|+..+++........ ....
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g 119 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 119 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCC
Confidence 3458999999988877776666543211 122678888877655432 2345
Q ss_pred CCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 212 ~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
..+|+|||.. +.. .+++....+||.
T Consensus 120 ~i~vlvaT~~-----l~~--Gin~p~~~vvi~ 144 (201)
T d2p6ra4 120 NIKVVVATPT-----LAA--GVNLPARRVIVR 144 (201)
T ss_dssp SCCEEEECST-----TTS--SSCCCBSEEEEC
T ss_pred CceEEEechH-----HHh--hcCCCCceEEEe
Confidence 6899999952 222 667776666664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.50 E-value=0.17 Score=42.69 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.5
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.++++++.|++|+|||..+
T Consensus 27 ~~h~vLl~G~pG~GKT~la 45 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAV 45 (333)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCCeEEEECCCCccHHHHH
Confidence 4578999999999999764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=84.32 E-value=0.16 Score=41.22 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=12.9
Q ss_pred EEEEcCCCCchhHHhH
Q psy3143 131 ICGCAATGTGKTAAFM 146 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~ 146 (337)
++++||+|+|||++.-
T Consensus 49 l~l~GppGtGKT~l~~ 64 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAK 64 (287)
T ss_dssp EECTTCCSSSHHHHHH
T ss_pred EEeECCCCCCHHHHHH
Confidence 4568999999998753
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.29 E-value=0.26 Score=37.19 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.||+|||||+..-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~ 19 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQF 19 (179)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999998644
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.28 E-value=0.26 Score=37.74 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-+++.||+|||||+..-.
T Consensus 8 iI~i~G~pGSGKsT~a~~ 25 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999997644
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.94 E-value=0.29 Score=37.57 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-+++.||+|||||+.+-.
T Consensus 10 iI~i~GppGSGKsT~a~~ 27 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEK 27 (196)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 377899999999987644
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=83.81 E-value=0.72 Score=37.14 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=37.2
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC----CCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFMLPILERLLYKP----RDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+-++.|.-+++.|++|+|||...+..++....... ....+.+++|+.-- .-..++...+..+..
T Consensus 24 ~G~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E-~~~~~~~~Rl~~~~~ 91 (274)
T d1nlfa_ 24 PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE-DPPTAIHHRLHALGA 91 (274)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS-SCHHHHHHHHHHHHT
T ss_pred CCccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEecc-chHHHHHHHHHHHhh
Confidence 33455777889999999999876655554332111 11234567777632 223455555655543
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.78 E-value=0.33 Score=37.20 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=18.2
Q ss_pred HhCCCCEEEEcCCCCchhHHhHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
+...+-+++.||+|||||+..-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~ 27 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEK 27 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHH
Confidence 34566788999999999987643
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.45 E-value=0.2 Score=38.12 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=13.4
Q ss_pred CCEE-EEcCCCCchhHHh
Q psy3143 129 RDIC-GCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~l-v~a~TGsGKT~~~ 145 (337)
+-+| |+|++|||||+.+
T Consensus 22 ~~iIgI~G~~GSGKSTla 39 (198)
T d1rz3a_ 22 RLVLGIDGLSRSGKTTLA 39 (198)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 3344 8999999999865
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.21 E-value=0.67 Score=37.56 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
|+-+.+.||+|+|||...+..+.+... .+.+++|+---
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~------~g~~~vyidtE 91 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAE 91 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc------CCCEEEEEccc
Confidence 356789999999999987776666542 25567776543
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.00 E-value=0.45 Score=37.12 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=52.1
Q ss_pred CCeeEEEEcCCHHHHHH-----HHHHHHHHhhc--cCcEEEEEeCCccH----HHHHHHHhcCCCEEEECcHHHHHHHhc
Q psy3143 161 QNTRVLVLVPTRELGVQ-----VYQVTRQLAQF--TSVEVALSVGGLEV----KVQESVLRKCPDIVIATPGRLLDHLHN 229 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q-----~~~~~~~l~~~--~~~~v~~~~~~~~~----~~~~~~~~~~~~Ilv~Tp~~l~~~l~~ 229 (337)
.+.++.||||..+-... ..+....+.+. .+.++.+++|..+. .....+.....+|+|||. .+..
T Consensus 28 ~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt-----ViE~ 102 (206)
T d1gm5a4 28 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VIEV 102 (206)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CCCS
T ss_pred cCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEeh-----hhhc
Confidence 46679999998653332 12233333332 36778889998653 333455566799999994 3333
Q ss_pred CCCCCCCCccEEEEecccccc
Q psy3143 230 TPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 230 ~~~~~l~~~~~iViDEad~l~ 250 (337)
.++..++.++|+..|+...
T Consensus 103 --GIDip~a~~iii~~a~~fg 121 (206)
T d1gm5a4 103 --GIDVPRANVMVIENPERFG 121 (206)
T ss_dssp --CSCCTTCCEEEBCSCSSSC
T ss_pred --cccccCCcEEEEEccCCcc
Confidence 7889999999999999753
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.95 E-value=0.54 Score=40.12 Aligned_cols=43 Identities=14% Similarity=-0.005 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHhCC----CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 110 NYIYPTPIQAATIPVALLG----RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
++..+...-..++..++.| +.++++||+|+|||..+. .+...+
T Consensus 132 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~-~~~~~~ 178 (362)
T d1svma_ 132 LLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAA-ALLELC 178 (362)
T ss_dssp TSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred cccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHH-HHHHHc
Confidence 4444433333444444444 478999999999997653 344444
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.88 E-value=0.34 Score=36.65 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.1
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.||+|||||+..-.
T Consensus 4 rIvl~G~pGSGKtT~a~~ 21 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPN 21 (180)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999998644
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=82.88 E-value=0.34 Score=37.16 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=15.6
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.||+|||||+..-.
T Consensus 8 rIiliG~PGSGKtT~a~~ 25 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSR 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 688999999999988654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.77 E-value=0.28 Score=37.31 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+-++++||+|+|||...
T Consensus 3 ~k~ivl~Gpsg~GK~tl~ 20 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIK 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467899999999999875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=82.75 E-value=0.58 Score=34.40 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q psy3143 131 ICGCAATGTGKTAAF 145 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~ 145 (337)
+.++|+.|||||+..
T Consensus 5 i~itG~~GSGKTTL~ 19 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLL 19 (170)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 568999999999754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.53 E-value=0.35 Score=36.90 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.5
Q ss_pred EEEEcCCCCchhHHhHH
Q psy3143 131 ICGCAATGTGKTAAFML 147 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~ 147 (337)
+++.||+|||||+.+-.
T Consensus 4 I~i~GppGSGKsT~a~~ 20 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCAR 20 (194)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999998744
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.31 E-value=2.4 Score=34.21 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=49.0
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHH------------HHHHHHhcCCCEEEECcHHHHHHHh
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK------------VQESVLRKCPDIVIATPGRLLDHLH 228 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~~Ilv~Tp~~l~~~l~ 228 (337)
.+.++||.+.++.-+..+.+.+... ++.+..+.|..... ....+-.+.++|+|+|- .+.
T Consensus 160 ~~~k~iiF~~~~~~~~~~~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~-----~~~ 230 (286)
T d1wp9a2 160 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGE 230 (286)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGG
T ss_pred CCCcEEEEeCcHHhHHHHHHHHHHc----CCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEcc-----cee
Confidence 3568999999999998888877653 35555565533221 11223345679999993 233
Q ss_pred cCCCCCCCCccEEEEec
Q psy3143 229 NTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 229 ~~~~~~l~~~~~iViDE 245 (337)
. .+++..+++||+=.
T Consensus 231 ~--Gld~~~~~~Vi~~d 245 (286)
T d1wp9a2 231 E--GLDVPEVDLVVFYE 245 (286)
T ss_dssp G--GGGSTTCCEEEESS
T ss_pred c--cccCCCCCEEEEeC
Confidence 3 78899999998633
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.27 E-value=0.31 Score=36.33 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|+|||+..-+
T Consensus 3 ~IvliG~~G~GKSTig~~ 20 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRR 20 (165)
T ss_dssp SEEEECSTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 578889999999987644
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=81.99 E-value=0.52 Score=37.83 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=18.2
Q ss_pred HHHhCCCCEEEEcCCCCchhHHh
Q psy3143 123 PVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+..+..+++.|++|+|||..+
T Consensus 18 ~~a~~~~pvlI~Ge~GtGK~~~A 40 (247)
T d1ny5a2 18 KISCAECPVLITGESGVGKEVVA 40 (247)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHH
T ss_pred HHhCCCCCEEEECCCCcCHHHHH
Confidence 34456779999999999999654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.95 E-value=0.26 Score=40.13 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.++++||+|+|||+..
T Consensus 41 ~~giLL~Gp~GtGKT~l~ 58 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLA 58 (265)
T ss_dssp CCEEEEBCCTTSSHHHHH
T ss_pred CCeEEEECCCCCcchhHH
Confidence 357999999999999764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.77 E-value=0.33 Score=36.60 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.8
Q ss_pred EEEEcCCCCchhHHhHH
Q psy3143 131 ICGCAATGTGKTAAFML 147 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~ 147 (337)
++++|++|||||+..-.
T Consensus 4 ivi~G~~GsGKTT~~~~ 20 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56899999999987533
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.65 E-value=0.97 Score=36.03 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=46.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCC-ccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD-IEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~-~~~ 240 (337)
+.++||.++|+.-|..++..+... +... +...........+..+.++|+|||... -+.+. ..+++.+ +++
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~-----~hg~-~~~~~R~~~~~~f~~g~~~vLVaT~a~-~~v~~--rGlDip~~v~~ 95 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNK-----FRIG-IVTATKKGDYEKFVEGEIDHLIGTAHY-YGTLV--RGLDLPERIRF 95 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEE-ECTTSSSHHHHHHHHTSCSEEEEECC---------CCSCCTTTCCE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHh-----ccCC-CCHHHHHHHHHHHHhCCCeEEEEeccc-cchhh--hccCccccccE
Confidence 456899999999998888776542 2211 122223344455566778999999531 01111 2678864 999
Q ss_pred EEEeccc
Q psy3143 241 LVLDEAD 247 (337)
Q Consensus 241 iViDEad 247 (337)
||.=.+.
T Consensus 96 VI~~d~P 102 (248)
T d1gkub2 96 AVFVGCP 102 (248)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 9965454
|