Psyllid ID: psy3490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MLHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccccEEEEEcccccccccEEEEEEccccHHHHHcccccccEEEEEccEEcccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccEEEEEEEEEEccccccccEEEEEccccHHHHHcccccccEEEEEccEEcccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlhlnpvtseivvvpkakgEILGVVIVEsgwgsmlpTVVIANLapagaaarcgqlnigdqiiAVNGVslvglplstcQTYIKVNHHLC
Flexible Loop (DISEMBL)
mlhlnpvtseivvvpkakgEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC
Low Complexity Region (SEG)
MLHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC
Disordered region (IsUnstruct)
******VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH***
Disordered Region (DISOPRED)
********SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH**
Disordered Region (DISEMBL)
MLHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC
Disordered Region (DISPRO)
****NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
O35430	839	Amyloid beta A4 precursor	yes	N/A	0.806	0.084	0.704	4e-24
B2RUJ5	842	Amyloid beta A4 precursor	yes	N/A	0.806	0.084	0.704	4e-24
Q02410	837	Amyloid beta A4 precursor	yes	N/A	0.806	0.084	0.704	4e-24
O17583	982	Protein lin-10 OS=Caenorh	yes	N/A	0.852	0.076	0.68	3e-23
O35431	750	Amyloid beta A4 precursor	no	N/A	0.761	0.089	0.701	1e-22
P98084	750	Amyloid beta A4 precursor	no	N/A	0.761	0.089	0.701	1e-22
Q5RD33	749	Amyloid beta A4 precursor	no	N/A	0.761	0.089	0.701	2e-22
Q99767	749	Amyloid beta A4 precursor	no	N/A	0.761	0.089	0.701	2e-22
O70248	569	Amyloid beta A4 precursor	no	N/A	0.852	0.131	0.578	2e-17
O88888	571	Amyloid beta A4 precursor	no	N/A	0.806	0.124	0.591	3e-17

>sp|O35430|APBA1_RAT Amyloid beta A4 precursor protein-binding family A member 1 OS=Rattus norvegicus GN=Apba1 PE=1 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct: 659 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 718

Query: 72  LPLSTCQTYIK 82
           LPLSTCQ+ IK
Sbjct: 719 LPLSTCQSIIK 729

Putative function in synaptic vesicle exocytosis by binding to Munc18-1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-AAP.
Rattus norvegicus (taxid: 10116)

>sp|B2RUJ5|APBA1_MOUSE Amyloid beta A4 precursor protein-binding family A member 1 OS=Mus musculus GN=Apba1 PE=2 SV=2

 Score =  110 bits (274), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct: 662 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 721

Query: 72  LPLSTCQTYIK 82
           LPLSTCQ+ IK
Sbjct: 722 LPLSTCQSIIK 732

Putative function in synaptic vesicle exocytosis by binding to Munc18-1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-AAP.

Mus musculus (taxid: 10090)

>sp|Q02410|APBA1_HUMAN Amyloid beta A4 precursor protein-binding family A member 1 OS=Homo sapiens GN=APBA1 PE=1 SV=3

 Score =  110 bits (274), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct: 657 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 716

Query: 72  LPLSTCQTYIK 82
           LPLSTCQ+ IK
Sbjct: 717 LPLSTCQSIIK 727

Putative function in synaptic vesicle exocytosis by binding to Munc18-1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Homo sapiens (taxid: 9606)

>sp|O17583|LIN10_CAEEL Protein lin-10 OS=Caenorhabditis elegans GN=lin-10 PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 8   TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
           T + VVVPK  GE LG+V+VESGWGSMLPTVV+A++ P G AA   +LNIGDQII +NG+
Sbjct: 798 TQKEVVVPKKAGEPLGIVVVESGWGSMLPTVVLAHMNPVGPAAHSNKLNIGDQIININGI 857

Query: 68  SLVGLPLSTCQTYIK 82
           SLVGLPLS  QT IK
Sbjct: 858 SLVGLPLSAAQTQIK 872

Required specifically for the determination of 3 vulval precursor cell fates P5.p, P6.p and P7.p during late second and early third larval stages; required for basolateral localization of receptor tyrosine kinase let-23. Could have a general but redundant role in development, functioning in diverse cell lineages to control cell fates.

Caenorhabditis elegans (taxid: 6239)

>sp|O35431|APBA2_RAT Amyloid beta A4 precursor protein-binding family A member 2 OS=Rattus norvegicus GN=Apba2 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/67 (70%), Positives = 58/67 (86%)

Query: 16  KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
           K KGEILGVV+VESGWGS+LPTV++AN+   G AAR G+L+IGDQI+++NG SLVGLPL+
Sbjct: 574 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 633

Query: 76  TCQTYIK 82
           TCQ  IK
Sbjct: 634 TCQGIIK 640

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Rattus norvegicus (taxid: 10116)

>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2 OS=Mus musculus GN=Apba2 PE=1 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/67 (70%), Positives = 58/67 (86%)

Query: 16  KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
           K KGEILGVV+VESGWGS+LPTV++AN+   G AAR G+L+IGDQI+++NG SLVGLPL+
Sbjct: 574 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 633

Query: 76  TCQTYIK 82
           TCQ  IK
Sbjct: 634 TCQGIIK 640

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Mus musculus (taxid: 10090)

>sp|Q5RD33|APBA2_PONAB Amyloid beta A4 precursor protein-binding family A member 2 OS=Pongo abelii GN=APBA2 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/67 (70%), Positives = 58/67 (86%)

Query: 16  KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
           K KGEILGVV+VESGWGS+LPTV++AN+   G AAR G+L+IGDQI+++NG SLVGLPL+
Sbjct: 573 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 632

Query: 76  TCQTYIK 82
           TCQ  IK
Sbjct: 633 TCQGIIK 639

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Pongo abelii (taxid: 9601)

>sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2 OS=Homo sapiens GN=APBA2 PE=1 SV=3

 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/67 (70%), Positives = 58/67 (86%)

Query: 16  KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
           K KGEILGVV+VESGWGS+LPTV++AN+   G AAR G+L+IGDQI+++NG SLVGLPL+
Sbjct: 573 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 632

Query: 76  TCQTYIK 82
           TCQ  IK
Sbjct: 633 TCQGIIK 639

Putative function in synaptic vesicle exocytosis by binding to STXBP1, an essential component of the synaptic vesicle exocytotic machinery. May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP.

Homo sapiens (taxid: 9606)

>sp|O70248|APBA3_RAT Amyloid beta A4 precursor protein-binding family A member 3 OS=Rattus norvegicus GN=Apba3 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V + K  GE LGV +VESGWGS+LPT VIANL   G A RCG L+IGD++ A+NG SLVG
Sbjct: 390 VCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAINGTSLVG 449

Query: 72  LPLSTCQTYIK-VNHH 86
           L L+ CQ  ++ V  H
Sbjct: 450 LSLAACQAAVREVRRH 465

May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP. May enhance the activity of HIF1A in macrophages by inhibiting the activity of HIF1AN.

Rattus norvegicus (taxid: 10116)

>sp|O88888|APBA3_MOUSE Amyloid beta A4 precursor protein-binding family A member 3 OS=Mus musculus GN=Apba3 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 52/71 (73%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V + K  GE LGV +VESGWGS+LPT VIANL   G A RCG L+IGD++ A+NG SLVG
Sbjct: 392 VCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAINGTSLVG 451

Query: 72  LPLSTCQTYIK 82
           L L+ CQ  ++
Sbjct: 452 LSLAACQAAVR 462

May modulate processing of the beta-amyloid precursor protein (APP) and hence formation of beta-APP. May enhance the activity of HIF1A in macrophages by inhibiting the activity of HIF1AN.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
350413860	1371	PREDICTED: hypothetical protein LOC10074	0.806	0.051	0.985	5e-34
380026823	1455	PREDICTED: uncharacterized protein LOC10	0.806	0.048	0.985	5e-34
383853740	1559	PREDICTED: uncharacterized protein LOC10	0.806	0.045	0.985	7e-34
307211613	1527	Protein lin-10 [Harpegnathos saltator]	0.806	0.046	0.985	7e-34
307169188	1466	Protein lin-10 [Camponotus floridanus]	0.806	0.048	0.985	8e-34
242024334	1298	conserved hypothetical protein [Pediculu	0.806	0.054	0.957	1e-33
332030896	734	Protein lin-10 [Acromyrmex echinatior]	0.806	0.096	0.985	5e-33
322796303	817	hypothetical protein SINV_07929 [Solenop	0.806	0.086	0.985	6e-33
328793153	340	PREDICTED: protein lin-10-like [Apis mel	0.806	0.208	0.985	1e-32
170048649	1194	conserved hypothetical protein [Culex qu	0.806	0.059	0.929	7e-32

>gi|350413860|ref|XP_003490137.1| PREDICTED: hypothetical protein LOC100749055 [Bombus impatiens]

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 1191 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 1250

Query: 72   LPLSTCQTYIK 82
            LPLSTCQTYIK
Sbjct: 1251 LPLSTCQTYIK 1261

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026823|ref|XP_003697140.1| PREDICTED: uncharacterized protein LOC100868101 [Apis florea]

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 1275 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 1334

Query: 72   LPLSTCQTYIK 82
            LPLSTCQTYIK
Sbjct: 1335 LPLSTCQTYIK 1345

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853740|ref|XP_003702380.1| PREDICTED: uncharacterized protein LOC100882469 [Megachile rotundata]

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 1379 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 1438

Query: 72   LPLSTCQTYIK 82
            LPLSTCQTYIK
Sbjct: 1439 LPLSTCQTYIK 1449

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211613|gb|EFN87662.1| Protein lin-10 [Harpegnathos saltator]

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 1347 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 1406

Query: 72   LPLSTCQTYIK 82
            LPLSTCQTYIK
Sbjct: 1407 LPLSTCQTYIK 1417

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169188|gb|EFN62004.1| Protein lin-10 [Camponotus floridanus]

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 1286 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 1345

Query: 72   LPLSTCQTYIK 82
            LPLSTCQTYIK
Sbjct: 1346 LPLSTCQTYIK 1356

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024334|ref|XP_002432583.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518043|gb|EEB19845.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/71 (95%), Positives = 71/71 (100%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAP+GAAARCGQLNIGDQIIA+NG+SLVG
Sbjct: 1118 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPSGAAARCGQLNIGDQIIAINGISLVG 1177

Query: 72   LPLSTCQTYIK 82
            LPLSTCQTYIK
Sbjct: 1178 LPLSTCQTYIK 1188

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030896|gb|EGI70532.1| Protein lin-10 [Acromyrmex echinatior]

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 554 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 613

Query: 72  LPLSTCQTYIK 82
           LPLSTCQTYIK
Sbjct: 614 LPLSTCQTYIK 624

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796303|gb|EFZ18874.1| hypothetical protein SINV_07929 [Solenopsis invicta]

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 637 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 696

Query: 72  LPLSTCQTYIK 82
           LPLSTCQTYIK
Sbjct: 697 LPLSTCQTYIK 707

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793153|ref|XP_001123207.2| PREDICTED: protein lin-10-like [Apis mellifera]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA+NGVSLVG
Sbjct: 160 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAINGVSLVG 219

Query: 72  LPLSTCQTYIK 82
           LPLSTCQTYIK
Sbjct: 220 LPLSTCQTYIK 230

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048649|ref|XP_001853475.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870696|gb|EDS34079.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/71 (92%), Positives = 70/71 (98%)

Query: 12   VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            VVVPKAKGEILGVVIVESGWGSMLPTVVIANLA +GAAARCGQLNIGDQIIA+NG+SLVG
Sbjct: 1016 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLASSGAAARCGQLNIGDQIIAINGLSLVG 1075

Query: 72   LPLSTCQTYIK 82
            LPLSTCQ+YIK
Sbjct: 1076 LPLSTCQSYIK 1086

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0052677	2139	X11Lbeta "X11Lbeta" [Drosophil	0.806	0.033	0.915	1.9e-28
FB|FBgn0026313	1168	X11L "X11L" [Drosophila melano	0.806	0.060	0.887	4.6e-28
UNIPROTKB|F1SJD2	394	APBA1 "Uncharacterized protein	0.806	0.180	0.704	1.9e-22
UNIPROTKB|E1C7H3	824	APBA1 "Uncharacterized protein	0.806	0.086	0.704	2.3e-21
UNIPROTKB|F1MYC3	835	APBA1 "Uncharacterized protein	0.806	0.085	0.704	2.3e-21
UNIPROTKB|Q02410	837	APBA1 "Amyloid beta A4 precurs	0.806	0.084	0.704	2.4e-21
RGD|620844	839	Apba1 "amyloid beta (A4) precu	0.806	0.084	0.704	2.4e-21
UNIPROTKB|O35430	839	Apba1 "Amyloid beta A4 precurs	0.806	0.084	0.704	2.4e-21
MGI|MGI:1860297	842	Apba1 "amyloid beta (A4) precu	0.806	0.084	0.704	2.4e-21
WB|WBGene00002999	982	lin-10 [Caenorhabditis elegans	0.852	0.076	0.68	5e-21

FB|FBgn0052677 X11Lbeta "X11Lbeta" [Drosophila melanogaster (taxid:7227)]

 Score = 333 (122.3 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 65/71 (91%), Positives = 69/71 (97%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             VVVPKAKGEILGVVIVESGWGSMLPTVVIANL  +GAAARCGQLNIGDQ+IA+NG+SLVG
Sbjct:  1959 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGLSLVG 2018

Query:    72 LPLSTCQTYIK 82
             LPLSTCQTYIK
Sbjct:  2019 LPLSTCQTYIK 2029

GO:0001540 "beta-amyloid binding" evidence=ISS

FB|FBgn0026313 X11L "X11L" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 63/71 (88%), Positives = 69/71 (97%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             VVVPKAKGEILGVVIVESGWGSMLPTVVIANL  +GAAARCGQLNIGDQ+IA+NG+SLVG
Sbjct:   988 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLMSSGAAARCGQLNIGDQLIAINGMSLVG 1047

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+YI+
Sbjct:  1048 LPLSTCQSYIR 1058

GO:0016080 "synaptic vesicle targeting" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0048749 "compound eye development" evidence=IMP

UNIPROTKB|F1SJD2 APBA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 261 (96.9 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   214 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 273

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   274 LPLSTCQSIIK 284

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|E1C7H3 APBA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   644 VYIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 703

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   704 LPLSTCQSIIK 714

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

UNIPROTKB|F1MYC3 APBA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   655 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 714

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   715 LPLSTCQSIIK 725

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|Q02410 APBA1 "Amyloid beta A4 precursor protein-binding family A member 1" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   657 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 716

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   717 LPLSTCQSIIK 727

GO:0001540 "beta-amyloid binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006461 "protein complex assembly" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0008088 "axon cargo transport" evidence=TAS

RGD|620844 Apba1 "amyloid beta (A4) precursor protein-binding, family A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   659 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 718

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   719 LPLSTCQSIIK 729

GO:0001540 "beta-amyloid binding" evidence=IPI

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA;ISO

GO:0007268 "synaptic transmission" evidence=IEA;ISO

GO:0007626 "locomotory behavior" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=IEA;ISO

GO:0014047 "glutamate secretion" evidence=IEA;ISO

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|O35430 Apba1 "Amyloid beta A4 precursor protein-binding family A member 1" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   659 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 718

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   719 LPLSTCQSIIK 729

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

MGI|MGI:1860297 Apba1 "amyloid beta (A4) precursor protein binding, family A, member 1" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query:    12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
             V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct:   662 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 721

Query:    72 LPLSTCQTYIK 82
             LPLSTCQ+ IK
Sbjct:   722 LPLSTCQSIIK 732

GO:0001540 "beta-amyloid binding" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IPI

GO:0007268 "synaptic transmission" evidence=IGI;IMP

GO:0007626 "locomotory behavior" evidence=IGI

GO:0010468 "regulation of gene expression" evidence=IGI

GO:0014047 "glutamate secretion" evidence=IGI

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=IGI

GO:0043234 "protein complex" evidence=ISO

WB|WBGene00002999 lin-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 259 (96.2 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query:     8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
             T + VVVPK  GE LG+V+VESGWGSMLPTVV+A++ P G AA   +LNIGDQII +NG+
Sbjct:   798 TQKEVVVPKKAGEPLGIVVVESGWGSMLPTVVLAHMNPVGPAAHSNKLNIGDQIININGI 857

Query:    68 SLVGLPLSTCQTYIK 82
             SLVGLPLS  QT IK
Sbjct:   858 SLVGLPLSAAQTQIK 872

GO:0008105 "asymmetric protein localization" evidence=IDA

GO:0007270 "neuron-neuron synaptic transmission" evidence=IMP

GO:0040026 "positive regulation of vulval development" evidence=IMP

GO:0050975 "sensory perception of touch" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02410	APBA1_HUMAN	No assigned EC number	0.7042	0.8068	0.0848	yes	N/A
O17583	LIN10_CAEEL	No assigned EC number	0.68	0.8522	0.0763	yes	N/A
B2RUJ5	APBA1_MOUSE	No assigned EC number	0.7042	0.8068	0.0843	yes	N/A
O35430	APBA1_RAT	No assigned EC number	0.7042	0.8068	0.0846	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-10
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	5e-10
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-06
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	0.001
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	0.003

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 51.9 bits (125), Expect = 1e-10
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K+    LG  +V    G   P + ++ + P GAA   G L  GD+I+++NG  L  
Sbjct: 2  VTLEKSGRGGLGFSLVGGSDGD--PGIFVSEVLPGGAAEA-GGLQEGDRILSINGQDLEN 58

Query: 72 LPLSTCQTYIK 82
          L        +K
Sbjct: 59 LSHDEAVLALK 69

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 50.3 bits (121), Expect = 5e-10
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K  G  LG  +           + ++ + P G A R G L +GD+I+ VNGVS+ G
Sbjct: 4  VTLRKDPGGGLGFSLRGGKDSGG--GIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEG 60

Query: 72 LPLSTCQTYIK 82
          L        +K
Sbjct: 61 LTHEEAVELLK 71

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 41.6 bits (98), Expect = 1e-06
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +V + K  G  LG  +V          VV++++ P   AA+ G L +GD I+ VNG S+ 
Sbjct: 4  LVELEK-GGGGLGFSLVGGKDEGG--GVVVSSVVPGSPAAKAG-LRVGDVILEVNGTSVE 59

Query: 71 GLPLSTCQTYIK 82
          GL        +K
Sbjct: 60 GLTHLEAVDLLK 71

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 31 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
           G      VI  + P   AA+ G L  GD+I+A+NG
Sbjct: 7  PGGPPIEPVIGEVVPGSPAAKAG-LKAGDRILAING 41

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          VV+ ++ P   A R G L  GD I+AVNG  +  L L      +K
Sbjct: 15 VVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLK 58

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.73
KOG3550|consensus	207		99.64
KOG3605|consensus	829		99.54
KOG3209|consensus	984		99.53
KOG3209|consensus	984		99.49
KOG3551|consensus	506		99.49
KOG3549|consensus	505		99.45
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.42
KOG3553|consensus	124		99.37
KOG3651|consensus	429		99.34
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.33
KOG3606|consensus	358		99.33
KOG3571|consensus	626		99.31
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.26
KOG1892|consensus	1629		99.25
KOG3580|consensus	1027		99.08
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.99
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.96
KOG3542|consensus	1283		98.93
KOG3938|consensus	334		98.85
KOG0609|consensus	542		98.84
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.82
KOG3580|consensus	1027		98.8
KOG3605|consensus	829		98.7
KOG3552|consensus	1298		98.68
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.67
PRK11186	667	carboxy-terminal protease; Provisional	98.65
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.61
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.59
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.55
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.55
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.4
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.35
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	98.14
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.04
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.03
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.01
PRK10139	455	serine endoprotease; Provisional	98.01
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.0
PRK10139	455	serine endoprotease; Provisional	97.98
PRK10942	473	serine endoprotease; Provisional	97.92
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.92
PRK10898	353	serine endoprotease; Provisional	97.9
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.9
PRK10942	473	serine endoprotease; Provisional	97.88
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.69
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.62
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.52
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.44
KOG0606|consensus	1205		97.38
KOG1738|consensus	638		97.3
KOG3129|consensus	231		97.19
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.08
KOG3532|consensus	1051		97.08
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.7
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.39
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	95.69
KOG1320|consensus	473		95.63
PF12812	78	PDZ_1: PDZ-like domain	95.54
KOG4407|consensus	1973		95.18
KOG4371|consensus	1332		94.63
PRK09681	276	putative type II secretion protein GspC; Provision	94.21
KOG1421|consensus	955		91.08
COG0750	375	Predicted membrane-associated Zn-dependent proteas	89.25
COG3031	275	PulC Type II secretory pathway, component PulC [In	87.93
KOG4407|consensus	1973		87.39
KOG4371|consensus	1332		85.84
KOG3834|consensus	462		84.96
KOG0792|consensus	1144		83.05
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	82.49
KOG1421|consensus	955		80.68

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.73  E-value=1e-16  Score=88.08  Aligned_cols=73  Identities=25%  Similarity=0.422  Sum_probs=62.7

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +++.+....+|||.+..+.. ....++||..+.++++|+++| |++||+|++|||.++.++++++++.+++.+..
T Consensus         2 v~l~k~~~~~lG~~l~~~~~-~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~   74 (81)
T PF00595_consen    2 VTLEKSGNGPLGFTLRGGSD-NDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN   74 (81)
T ss_dssp             EEEEESTTSBSSEEEEEEST-SSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred             EEEEeCCCCCcCEEEEecCC-CCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence            56777767799999974333 223569999999999999999 99999999999999999999999999998763

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3550|consensus

Probab=99.64  E-value=9.2e-16  Score=92.77  Aligned_cols=73  Identities=33%  Similarity=0.507  Sum_probs=62.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+ ..+||||.+. ||++ +..+|||++++||+.|++-|.|+.||++++|||.++++-.|+.++++||.+.
T Consensus        92 rvvelpk-tdeglgfnvm-ggke-qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~  164 (207)
T KOG3550|consen   92 RVVELPK-TDEGLGFNVM-GGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV  164 (207)
T ss_pred             ceeecCc-cccccceeec-cCcc-cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence            4455553 3469999998 5554 4455999999999999999999999999999999999999999999999765

>KOG3605|consensus

Probab=99.54  E-value=7.5e-15  Score=104.33  Aligned_cols=85  Identities=64%  Similarity=0.953  Sum_probs=80.4

Q ss_pred             CcCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490           2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus         2 ~~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      .|.+++.+|++.++|.+|+.||+.|+.+|+++-.+.++|..+..++||+++|.|..||+|++|||.++.+++++-++..+
T Consensus       639 ~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~I  718 (829)
T KOG3605|consen  639 HFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSII  718 (829)
T ss_pred             HhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCC
Q psy3490          82 KVNHH   86 (88)
Q Consensus        82 k~~~~   86 (88)
                      |+.++
T Consensus       719 k~~Kn  723 (829)
T KOG3605|consen  719 KGLKN  723 (829)
T ss_pred             hcccc
Confidence            98764

>KOG3209|consensus

Probab=99.53  E-value=4.2e-14  Score=101.52  Aligned_cols=74  Identities=32%  Similarity=0.453  Sum_probs=64.1

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .-+|.+.++.++||||.|..+.. .+..  -|.++++||||++.|+|++||+|++|||.++.+++|.+++++||.++
T Consensus       754 ~yDV~lhR~ENeGFGFVi~sS~~-kp~s--giGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaG  827 (984)
T KOG3209|consen  754 PYDVVLHRKENEGFGFVIMSSQN-KPES--GIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAG  827 (984)
T ss_pred             CeeeEEecccCCceeEEEEeccc-CCCC--CccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcC
Confidence            35678999888899999984333 2333  38999999999999999999999999999999999999999999875

>KOG3209|consensus

Probab=99.49  E-value=9.5e-14  Score=99.73  Aligned_cols=71  Identities=30%  Similarity=0.424  Sum_probs=60.7

Q ss_pred             EEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .|+++  .|. ||||+|+ ||. .....+||.++.+++||.++|++++||+|++|||.+..+++|+.|+++||+-+
T Consensus       901 ~VelE--rG~kGFGFSiR-GGr-eynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg  972 (984)
T KOG3209|consen  901 TVELE--RGAKGFGFSIR-GGR-EYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGG  972 (984)
T ss_pred             EEEee--ccccccceEee-ccc-ccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCC
Confidence            34444  455 9999998 443 44456999999999999999999999999999999999999999999998654

>KOG3551|consensus

Probab=99.49  E-value=4.3e-14  Score=95.89  Aligned_cols=75  Identities=28%  Similarity=0.367  Sum_probs=68.6

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.+.+.|.+.+|||++|. ||.++..| |.|+++++|-+|++.+.|..||.|++|||.++.+.+|+|+++.||.++.
T Consensus        86 R~V~V~K~d~gGLGISIK-GGreNkMP-IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk  160 (506)
T KOG3551|consen   86 RRVRVVKQDAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK  160 (506)
T ss_pred             ceeEEEEecCCcceEEee-cCcccCCc-eehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence            678888888899999998 66667666 9999999999999999999999999999999999999999999998763

>KOG3549|consensus

Probab=99.45  E-value=2.5e-13  Score=91.48  Aligned_cols=75  Identities=28%  Similarity=0.353  Sum_probs=67.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.++|.+.+-+|||++|. ||. +..-++.|++++....|+..|.|.+||-|++|||..+++++|+|++.+||+++.
T Consensus        56 RtVtirRQ~vGGlGLSIK-GGa-EHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd  130 (505)
T KOG3549|consen   56 RTVTIRRQKVGGLGLSIK-GGA-EHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD  130 (505)
T ss_pred             eeEEEEeeecCcceeeec-ccc-ccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence            778999988889999997 443 344459999999999999999999999999999999999999999999999874

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.42  E-value=8.4e-12  Score=68.06  Aligned_cols=73  Identities=32%  Similarity=0.485  Sum_probs=60.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+....+|||.+.+ .. ....+++|..+.++++|++++ |++||.|++|||.++..++++++...++...
T Consensus         2 ~~~~l~~~~~~~~G~~~~~-~~-~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~   74 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRG-GK-DSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG   74 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeC-cc-cCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC
Confidence            4566776656799999963 22 113469999999999999976 9999999999999999999999999998754

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3553|consensus

Probab=99.37  E-value=8.8e-13  Score=74.72  Aligned_cols=63  Identities=24%  Similarity=0.324  Sum_probs=53.2

Q ss_pred             cccEEEEeCCCCC---------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          21 ILGVVIVESGWGS---------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        21 ~lG~~i~~~~~~~---------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      -+||.|- ||.++         .+.++||.+|.+||||+.+| |+.+|.|++|||-++.-++|++++..+++.+
T Consensus        36 ~~GFkIG-GGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~  107 (124)
T KOG3553|consen   36 ILGFKIG-GGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE  107 (124)
T ss_pred             EEEEEec-cccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH
Confidence            5799995 23221         12389999999999999999 9999999999999999999999999998754

>KOG3651|consensus

Probab=99.34  E-value=8.1e-12  Score=82.95  Aligned_cols=74  Identities=30%  Similarity=0.479  Sum_probs=66.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.++..+-+|++|  ||....-|++||.+++.++||+++|+++.||.|+.|||.++.+.+-.+++.++..+.
T Consensus         6 ~~v~ltKD~~nliGISI--GGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~   79 (429)
T KOG3651|consen    6 ETVELTKDEKNLIGISI--GGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL   79 (429)
T ss_pred             CcEEEeeccccceeEEe--cCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc
Confidence            45778888888999999  666566788999999999999999999999999999999999999999999998654

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.33  E-value=2.8e-11  Score=64.30  Aligned_cols=60  Identities=33%  Similarity=0.457  Sum_probs=51.6

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++||.+.+...    .+++|..+.+++||+.++ |++||.|++|||.++.+.+++++..+++...
T Consensus         2 ~~G~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   61 (70)
T cd00136           2 GLGFSIRGGTE----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV   61 (70)
T ss_pred             CccEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC
Confidence            68999852221    358999999999999877 9999999999999999999999999998753

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3606|consensus

Probab=99.33  E-value=4.2e-12  Score=83.07  Aligned_cols=84  Identities=29%  Similarity=0.460  Sum_probs=71.2

Q ss_pred             cCCCcccEEEEEECCCCC-cccEEEEeCCC-------CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCH
Q psy3490           3 HLNPVTSEIVVVPKAKGE-ILGVVIVESGW-------GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPL   74 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~-~lG~~i~~~~~-------~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~   74 (88)
                      .+-|++.+.+.+.+...+ +|||.|++|..       -+..++|||+++.||+.|+..|.|-+.|.+++|||+.+.+.++
T Consensus       153 DivPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTL  232 (358)
T KOG3606|consen  153 DIVPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTL  232 (358)
T ss_pred             cccchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccH
Confidence            356888888888887766 99999986543       2246689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q psy3490          75 STCQTYIKVNHH   86 (88)
Q Consensus        75 ~~~~~~lk~~~~   86 (88)
                      +|+-.|+-.+.|
T Consensus       233 DQVTDMMvANsh  244 (358)
T KOG3606|consen  233 DQVTDMMVANSH  244 (358)
T ss_pred             HHHHHHHhhccc
Confidence            999999865443

>KOG3571|consensus

Probab=99.31  E-value=5.3e-12  Score=88.07  Aligned_cols=75  Identities=23%  Similarity=0.297  Sum_probs=62.5

Q ss_pred             EEEEEC--CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPK--AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~--~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++++.+  ..-+.||++|++......+.+|||..+.++++-+.+|++.+||+|++||.+++++++-+||+..||++-
T Consensus       250 IITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV  326 (626)
T KOG3571|consen  250 IITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV  326 (626)
T ss_pred             EEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence            344444  333479999984344446778999999999999999999999999999999999999999999999753

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.26  E-value=2.8e-10  Score=62.08  Aligned_cols=72  Identities=31%  Similarity=0.440  Sum_probs=58.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+.+.. ..|||.+....  ....+++|..+.++++|+++| |++||.|++||+.++.++++.+...+++.++
T Consensus         3 ~~~~~~~~~-~~~G~~~~~~~--~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~   74 (85)
T smart00228        3 RLVELEKGG-GGLGFSLVGGK--DEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG   74 (85)
T ss_pred             EEEEEEECC-CcccEEEECCC--CCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            345566555 79999996222  211569999999999999999 9999999999999999999999998887653

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG1892|consensus

Probab=99.25  E-value=2.7e-11  Score=89.70  Aligned_cols=77  Identities=29%  Similarity=0.480  Sum_probs=63.8

Q ss_pred             EEEEEECCCCCcccEEEEeC-CCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~-~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      ...++.+.+.+|+|++|+.. |.+...-||||++|.+|++|+.+|+|..||++++|||+++-+++.+.|+.++..++.
T Consensus       933 ei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen  933 EIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred             ceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence            34555666668999999732 223334489999999999999999999999999999999999999999999987765

>KOG3580|consensus

Probab=99.08  E-value=4.1e-10  Score=80.56  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=67.0

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCC-----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSM-----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC   77 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~-----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~   77 (88)
                      ...-+..-++++.+..+.|||+.|. ||.+++     ...++|+.|.+|+||+  |+|+.+|+|+.|||++.++..|.-|
T Consensus         3 E~~IWEQhTvTL~kdp~rGFGIAiS-GGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFA   79 (1027)
T KOG3580|consen    3 EELIWEQHTVTLQKDPKRGFGIAIS-GGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFA   79 (1027)
T ss_pred             hhhhhhhheeeeecCCCCcceeEee-cCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHH
Confidence            3444555678888887779999997 444333     3479999999999997  7899999999999999999999999


Q ss_pred             HHHHHhCCC
Q psy3490          78 QTYIKVNHH   86 (88)
Q Consensus        78 ~~~lk~~~~   86 (88)
                      ++.||.++-
T Consensus        80 vQqLrksgK   88 (1027)
T KOG3580|consen   80 VQQLRKSGK   88 (1027)
T ss_pred             HHHHHhhcc
Confidence            999998764

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.99  E-value=5.7e-09  Score=57.24  Aligned_cols=57  Identities=26%  Similarity=0.461  Sum_probs=48.0

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++|+.+...     ..+++|..+.+++||++.| |++||.|++|||.++.+.++.++...++.
T Consensus         3 ~lG~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~   59 (85)
T cd00988           3 GIGLELKYD-----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRG   59 (85)
T ss_pred             EEEEEEEEc-----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcC
Confidence            577777521     1358999999999999987 99999999999999999888898888864

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.96  E-value=6.5e-09  Score=57.02  Aligned_cols=56  Identities=29%  Similarity=0.414  Sum_probs=42.9

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+|+.+....   ...+++|..+.++|||+++| |++||.|++|||.++.  +..+....+.
T Consensus         2 ~lGv~~~~~~---~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~   57 (82)
T PF13180_consen    2 GLGVTVQNLS---DTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILS   57 (82)
T ss_dssp             E-SEEEEECS---CSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHH
T ss_pred             EECeEEEEcc---CCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHH
Confidence            5788875211   13469999999999999999 9999999999999995  5667666664

...

>KOG3542|consensus

Probab=98.93  E-value=1.7e-09  Score=78.49  Aligned_cols=75  Identities=29%  Similarity=0.442  Sum_probs=64.2

Q ss_pred             EEEEEEC-CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Q psy3490          10 EIVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL   87 (88)
Q Consensus        10 ~~~~i~~-~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~~   87 (88)
                      +.+.+.+ +...++-|+++ ||.+. .-++||..|.||+.|++.| ++.||+|++|||++.++++...|.++|+++.||
T Consensus       537 RqviLtk~sre~pl~f~L~-GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnthL  612 (1283)
T KOG3542|consen  537 RQVILTKASREDPLMFRLV-GGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNTHL  612 (1283)
T ss_pred             eeEEEecccccCCceeEec-cCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCceE
Confidence            5677777 33449999998 44433 3359999999999999999 999999999999999999999999999999887

>KOG3938|consensus

Probab=98.85  E-value=4.3e-09  Score=68.90  Aligned_cols=71  Identities=28%  Similarity=0.389  Sum_probs=60.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +++.+.++ ...||++|.+.|.+.    .||+++.++|.-++-..+++||.|-+|||+++.++.|.|++.+||+-.
T Consensus       128 kEv~v~Ks-edalGlTITDNG~Gy----AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~  198 (334)
T KOG3938|consen  128 KEVEVVKS-EDALGLTITDNGAGY----AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELP  198 (334)
T ss_pred             eeEEEEec-ccccceEEeeCCcce----eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcc
Confidence            66766653 359999997555544    799999999999998889999999999999999999999999999643

>KOG0609|consensus

Probab=98.84  E-value=1.2e-08  Score=71.82  Aligned_cols=73  Identities=33%  Similarity=0.471  Sum_probs=64.1

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+.+.++.+.++|.++.   ..... .++|.++..|+.+++.|.|++||.|.+|||+++.+....+++.+++.+.
T Consensus       123 vriv~i~k~~~eplG~Tik---~~e~~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~  195 (542)
T KOG0609|consen  123 VRIVRIVKNTGEPLGATIR---VEEDT-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR  195 (542)
T ss_pred             eEEEEEeecCCCccceEEE---eccCC-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence            4778899888899999995   21222 4899999999999999999999999999999999999999999998765

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.82  E-value=1e-08  Score=71.09  Aligned_cols=78  Identities=21%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             cCCCcccEEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      |++|++++.+...... -.++|..+..  ...  ..+.|.++.+++||+++| +++||.|+.|||.++.++..++++..+
T Consensus        82 y~~~e~~~~~~~~~~~~~~GiG~~i~~--~~~--~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~i  156 (406)
T COG0793          82 YLDPEDAAEFRTDTSGEFGGIGIELQM--EDI--GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLI  156 (406)
T ss_pred             ccCHHHHHHhhhhccccccceeEEEEE--ecC--CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHh
Confidence            5667777665544332 2288888852  111  358999999999999999 999999999999999999999999999


Q ss_pred             HhCC
Q psy3490          82 KVNH   85 (88)
Q Consensus        82 k~~~   85 (88)
                      |+..
T Consensus       157 rG~~  160 (406)
T COG0793         157 RGKP  160 (406)
T ss_pred             CCCC
Confidence            8765

>KOG3580|consensus

Probab=98.80  E-value=1.9e-08  Score=72.24  Aligned_cols=67  Identities=25%  Similarity=0.405  Sum_probs=57.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      |.+.+.  +|...|+.++ ||.+.   +|||..|.+|+||+..| |+.||+|+.||.+++.++..++|+..|-.
T Consensus       409 k~VrF~--KGdSvGLRLA-GGNDV---GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~  475 (1027)
T KOG3580|consen  409 KMVRFK--KGDSVGLRLA-GGNDV---GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLE  475 (1027)
T ss_pred             eeEEee--cCCeeeeEec-cCCce---eEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhc
Confidence            655554  4779999997 45443   59999999999999999 99999999999999999999999987753

>KOG3605|consensus

Probab=98.70  E-value=2.9e-08  Score=71.50  Aligned_cols=64  Identities=27%  Similarity=0.448  Sum_probs=53.5

Q ss_pred             EEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          11 IVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        11 ~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++.|.+-+-. .|||++.     +    =+|.++..|+.|+|.| +++|.+|++|||+++...+|+.++++|..+
T Consensus       739 ~V~I~RPd~kyQLGFSVQ-----N----GiICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~a  803 (829)
T KOG3605|consen  739 TVLIRRPDLRYQLGFSVQ-----N----GIICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNA  803 (829)
T ss_pred             EEEeecccchhhccceee-----C----cEeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHh
Confidence            4555554433 9999994     2    1788899999999977 999999999999999999999999999764

>KOG3552|consensus

Probab=98.68  E-value=2.5e-08  Score=74.07  Aligned_cols=66  Identities=24%  Similarity=0.386  Sum_probs=53.6

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      |.+.++++..-||||.-  |      .+++|..|.+|+|++  |+|.+||+|++|||.++++++.+.+++++|.+.
T Consensus        57 r~vq~~r~~~lGFgfva--g------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace  122 (1298)
T KOG3552|consen   57 RQVQLQRNASLGFGFVA--G------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE  122 (1298)
T ss_pred             hhhhhhccccccceeec--C------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence            44556654444555543  2      248999999999997  789999999999999999999999999999765

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.67  E-value=2.7e-07  Score=49.79  Aligned_cols=44  Identities=30%  Similarity=0.522  Sum_probs=38.2

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+.|..+.++++|++.| |++||.|++|||.++.  +.+++...++.
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~   56 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQE   56 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHH
Confidence            47899999999999988 9999999999999997  55677777654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.65  E-value=6.5e-08  Score=70.52  Aligned_cols=78  Identities=28%  Similarity=0.345  Sum_probs=55.7

Q ss_pred             cCCCcccEEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECC-----EECCCCCHHH
Q psy3490           3 HLNPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG-----VSLVGLPLST   76 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng-----~~~~~~~~~~   76 (88)
                      |++|++.+.+...... -.|+|+.+..  .   ...++|..+.|||||++++.|++||.|++||+     .++.+++.++
T Consensus       226 Y~sp~e~e~f~~~~~~~~~GIGa~l~~--~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~  300 (667)
T PRK11186        226 YLSPRNAEQFNTEMNLSLEGIGAVLQM--D---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDD  300 (667)
T ss_pred             ccChHHHHHhhhccCCceeEEEEEEEE--e---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHH
Confidence            4555555444333221 1278888741  1   12489999999999999855999999999994     3566889999


Q ss_pred             HHHHHHhCC
Q psy3490          77 CQTYIKVNH   85 (88)
Q Consensus        77 ~~~~lk~~~   85 (88)
                      ++.+|++..
T Consensus       301 vv~lirG~~  309 (667)
T PRK11186        301 VVALIKGPK  309 (667)
T ss_pred             HHHHhcCCC
Confidence            999998654

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.61  E-value=4.7e-07  Score=62.50  Aligned_cols=62  Identities=29%  Similarity=0.399  Sum_probs=49.5

Q ss_pred             cccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++|+.+..... .....++.|..+.++|||+++| |++||.|++|||.++.+.+..++..++++
T Consensus        86 GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g  148 (389)
T PLN00049         86 GVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQG  148 (389)
T ss_pred             EEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            88888742111 1112358999999999999998 99999999999999999888888888864

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.59  E-value=4.3e-07  Score=49.48  Aligned_cols=45  Identities=27%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .++.|..+.+++||+++| |++||.|++|||.++.  +.++....+..
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~   54 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKP   54 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhc
Confidence            368999999999999988 9999999999999997  56677777654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.55  E-value=5.5e-07  Score=48.75  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             ccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCC
Q psy3490          22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG   71 (88)
Q Consensus        22 lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~   71 (88)
                      +|+.+.  .   ...++.|..+.++|+|+.+| |++||.|++|||.++.+
T Consensus         3 ~G~~~~--~---~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~   46 (80)
T cd00990           3 LGLTLD--K---EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA   46 (80)
T ss_pred             ccEEEE--c---cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence            577663  1   12248999999999999998 99999999999999875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.55  E-value=4.4e-07  Score=61.37  Aligned_cols=57  Identities=26%  Similarity=0.411  Sum_probs=47.5

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++|+.+..     ...+++|..+.++|||+++| |++||.|++|||.++.+.+..++...++.
T Consensus        52 ~lG~~~~~-----~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~  108 (334)
T TIGR00225        52 GIGIQVGM-----DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRG  108 (334)
T ss_pred             EEEEEEEE-----ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccC
Confidence            78888741     11248999999999999999 99999999999999998877787777754

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.40  E-value=2.3e-06  Score=47.07  Aligned_cols=44  Identities=32%  Similarity=0.536  Sum_probs=37.1

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +++|..+.+++||+++| |++||.|++|||.++.+  ..+....++.
T Consensus        25 g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~   68 (90)
T cd00987          25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAE   68 (90)
T ss_pred             EEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHh
Confidence            68999999999999988 99999999999999974  4455555543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.35  E-value=3.8e-06  Score=45.51  Aligned_cols=43  Identities=30%  Similarity=0.409  Sum_probs=36.5

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++.|..+.+++||+. + |++||.|++|||.++.  +.++....++.
T Consensus         9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~   51 (79)
T cd00986           9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQS   51 (79)
T ss_pred             CEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            589999999999986 7 9999999999999997  46666666653

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=98.14  E-value=2.2e-05  Score=47.27  Aligned_cols=78  Identities=21%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             cCCCcccEEEEEECCCC----CcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCC-CCEEEEECCEECCCCCHHH
Q psy3490           3 HLNPVTSEIVVVPKAKG----EILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVGLPLST   76 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~----~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~-gd~i~~Vng~~~~~~~~~~   76 (88)
                      ..+....|++.+..++.    ..+|+++.-.... ....++-|.+|.|+|||+.+| |.+ .|.|+.+++..+.+  .++
T Consensus         5 ~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~   81 (138)
T PF04495_consen    5 NAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDD   81 (138)
T ss_dssp             ETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCH
T ss_pred             ECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHH
Confidence            34556667777765332    3778888522222 234468899999999999999 887 69999999988874  345


Q ss_pred             HHHHHHh
Q psy3490          77 CQTYIKV   83 (88)
Q Consensus        77 ~~~~lk~   83 (88)
                      ..+.+..
T Consensus        82 l~~~v~~   88 (138)
T PF04495_consen   82 LFELVEA   88 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.04  E-value=2.3e-05  Score=54.69  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=40.0

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|+|+++| |++||.|++|||+++.  +.++..++++.
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~  406 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDR  406 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            469999999999999998 9999999999999997  56777777764

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR00054 RIP metalloprotease RseP

Probab=98.03  E-value=2.5e-05  Score=54.53  Aligned_cols=44  Identities=27%  Similarity=0.466  Sum_probs=39.1

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++.|..+.++|||+++| |++||.|++|||+++.  +.++....++.
T Consensus       204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~  247 (420)
T TIGR00054       204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKE  247 (420)
T ss_pred             CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            57899999999999998 9999999999999997  56787777765

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.01  E-value=4.8e-05  Score=50.13  Aligned_cols=58  Identities=17%  Similarity=0.161  Sum_probs=42.4

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+|++...  .+....|+.|..+.++++|++.| |+.||.|++|||.++.+  .+++.+++.+
T Consensus       178 ~lgi~p~~--~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~  235 (259)
T TIGR01713       178 YIRLSPVM--KNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQM  235 (259)
T ss_pred             eEeEEEEE--eCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            45555531  11223479999999999999999 99999999999999974  4455554443

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10139 serine endoprotease; Provisional

Probab=98.01  E-value=2.9e-05  Score=54.72  Aligned_cols=44  Identities=23%  Similarity=0.336  Sum_probs=39.2

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +++|..+.+++||+++| |++||.|++|||+++.  +.++....+++
T Consensus       391 Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~  434 (455)
T PRK10139        391 GIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAA  434 (455)
T ss_pred             ceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            68999999999999998 9999999999999996  56777777765

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.00  E-value=2.5e-05  Score=54.49  Aligned_cols=44  Identities=27%  Similarity=0.514  Sum_probs=37.6

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +..+....+.
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~  300 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIG  300 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHH
Confidence            468999999999999998 9999999999999997  4555555554

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=97.98  E-value=3.6e-05  Score=54.28  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=39.0

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +..+....+..
T Consensus       290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~  334 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIAT  334 (455)
T ss_pred             CceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            378999999999999998 9999999999999997  56777666653

>PRK10942 serine endoprotease; Provisional

Probab=97.92  E-value=4.9e-05  Score=53.84  Aligned_cols=46  Identities=28%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++|..+.++|+|++.| |++||.|++||++++.  +.++..+.+++.
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~  453 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSK  453 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhC
Confidence            368999999999999998 9999999999999997  567777777653

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.92  E-value=4.2e-05  Score=52.26  Aligned_cols=45  Identities=27%  Similarity=0.441  Sum_probs=38.2

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.+++||+++| |++||.|++|||+++.  +..+....++.
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~  322 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAE  322 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            368999999999999988 9999999999999997  45566665543

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.90  E-value=6.4e-05  Score=51.46  Aligned_cols=44  Identities=25%  Similarity=0.490  Sum_probs=36.7

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.+++||+++| |+.||.|++|||+++.+  ..+....+.
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~  322 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVA  322 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHH
Confidence            479999999999999988 99999999999999964  444444443

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.90  E-value=5.7e-05  Score=53.12  Aligned_cols=44  Identities=34%  Similarity=0.576  Sum_probs=38.3

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +..|..|.++|||+++| |++||.|++|||.++.  +.++....++.
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~  265 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRD  265 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            36899999999999998 9999999999999996  66777777654

>PRK10942 serine endoprotease; Provisional

Probab=97.88  E-value=6.8e-05  Score=53.16  Aligned_cols=44  Identities=20%  Similarity=0.470  Sum_probs=37.6

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.++|||+++| |+.||.|++|||..+.  +.++....+.
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~  354 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVG  354 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHH
Confidence            478999999999999998 9999999999999997  4556555554

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.69  E-value=9.9e-05  Score=51.92  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490          38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL   72 (88)
Q Consensus        38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~   72 (88)
                      ..|..+.++|||+++| +++||.|++|||+++.+.
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~  161 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW  161 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH
Confidence            3689999999999999 999999999999999754

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.62  E-value=6.5e-05  Score=52.65  Aligned_cols=38  Identities=29%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             EEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490          40 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus        40 I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      |..|.|+|+|+++| |++||+|++|||+.+.  +..+....
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~   39 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFL   39 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHH
Confidence            56789999999998 9999999999999996  44454433

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR00054 RIP metalloprotease RseP

Probab=97.52  E-value=0.00028  Score=49.36  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=34.9

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      .+..|..+.++|||+++| +++||.|++|||.++.+.  .+....
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~  169 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQ  169 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHH
Confidence            457899999999999998 999999999999998743  444433

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.44  E-value=0.0014  Score=45.77  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=30.4

Q ss_pred             CChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          46 AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        46 g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++||+.+| |++||.|++|||.++.  +.+++.+.++..
T Consensus       123 ~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~  158 (402)
T TIGR02860       123 HSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKA  158 (402)
T ss_pred             CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence            58999888 9999999999999997  567777777654

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG0606|consensus

Probab=97.38  E-value=0.00064  Score=52.19  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCc-----EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPT-----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~-----i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++|.. .+.+|||++..=....+..-     -.+-.|.+++||...+ ++.+|.|..|||+++.++.|.|+++++-+.+
T Consensus       630 I~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g  706 (1205)
T KOG0606|consen  630 ITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG  706 (1205)
T ss_pred             eeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence            44553 45588887641011111111     2577899999999988 9999999999999999999999999987443

>KOG1738|consensus

Probab=97.30  E-value=0.00045  Score=50.16  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=54.0

Q ss_pred             CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.++|+.|. +.   .+...+|+.+.+++||+....|..||.+++||+..+.+..+.-++..++.+.
T Consensus       210 kp~eglg~~I~-Ss---ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~  274 (638)
T KOG1738|consen  210 SPSEGLGLYID-SS---YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETP  274 (638)
T ss_pred             CcccCCceEEe-ee---cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCc
Confidence            34558999985 22   2223689999999999999999999999999999999999999998887654

>KOG3129|consensus

Probab=97.19  E-value=0.0014  Score=42.00  Aligned_cols=45  Identities=22%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Q psy3490          38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP-LSTCQTYIKV   83 (88)
Q Consensus        38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~-~~~~~~~lk~   83 (88)
                      ++|..|.|+|||+++| |+.||.|+.+....-.+.. +..+....++
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~  186 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQS  186 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHh
Confidence            6899999999999998 9999999998777655553 4444444443

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.08  E-value=0.0025  Score=45.72  Aligned_cols=41  Identities=34%  Similarity=0.546  Sum_probs=34.3

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCE
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV   67 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~   67 (88)
                      .||+.+.  .   ......|..|.++|||+++| |.+||.|+.|||.
T Consensus       452 ~LGl~v~--~---~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         452 YLGLKVK--S---EGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             ccceEec--c---cCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            7788773  1   12236899999999999999 9999999999999

>KOG3532|consensus

Probab=97.08  E-value=0.0031  Score=46.82  Aligned_cols=62  Identities=15%  Similarity=0.288  Sum_probs=48.1

Q ss_pred             CCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          16 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        16 ~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ...+.++|+....    +..+.+-|..|.++++|.++. +.+||.+++|||.++.  +-.++...++..
T Consensus       382 ~~~s~~ig~vf~~----~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~  443 (1051)
T KOG3532|consen  382 YDVSSPIGLVFDK----NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQST  443 (1051)
T ss_pred             ccccCceeEEEec----CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhc
Confidence            3344477777642    334458899999999999987 9999999999999996  677777777643

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0096  Score=40.50  Aligned_cols=44  Identities=32%  Similarity=0.496  Sum_probs=35.9

Q ss_pred             CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490          35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus        35 ~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      ..+++|..+.+++||++.| ++.||.|+++||.++.+  ..+....+
T Consensus       269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v  312 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAV  312 (347)
T ss_pred             CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHH
Confidence            3458999999999999998 99999999999999974  34444333

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.39  E-value=0.012  Score=40.02  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=38.4

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++|+..+..++++.  +.|+.||.|.+|||+++.  +.+|....+++.
T Consensus       131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~  174 (342)
T COG3480         131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSK  174 (342)
T ss_pred             eEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhcc
Confidence            68999999999985  679999999999999997  778888887654

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=95.69  E-value=0.039  Score=30.82  Aligned_cols=35  Identities=31%  Similarity=0.495  Sum_probs=21.4

Q ss_pred             cEEEEEECCC--------ChhhhhC-CCCCCCEEEEECCEECCC
Q psy3490          37 TVVIANLAPA--------GAAARCG-QLNIGDQIIAVNGVSLVG   71 (88)
Q Consensus        37 ~i~I~~v~~g--------~~a~~~g-~l~~gd~i~~Vng~~~~~   71 (88)
                      ++.|.++++|        ||..+-| .+++||.|++|||+++..
T Consensus        13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~   56 (88)
T PF14685_consen   13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA   56 (88)
T ss_dssp             EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT
T ss_pred             EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC
Confidence            4678888887        4544433 366999999999999964

>KOG1320|consensus

Probab=95.63  E-value=0.016  Score=41.36  Aligned_cols=45  Identities=27%  Similarity=0.441  Sum_probs=36.9

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++..|.+++++...+ +..||+|..|||.++.++  .+...+++.+
T Consensus       399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~  443 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEEC  443 (473)
T ss_pred             EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhc
Confidence            58899999999999876 999999999999999865  3445555443

>PF12812 PDZ_1: PDZ-like domain

Probab=95.54  E-value=0.1  Score=28.44  Aligned_cols=46  Identities=22%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      .++.....++++...+ +..|-.|.+||++++.  ++++-++.+|+.++
T Consensus        32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd   77 (78)
T PF12812_consen   32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD   77 (78)
T ss_pred             EEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence            4555678888887655 9999999999999997  67777788877654

>KOG4407|consensus

Probab=95.18  E-value=0.011  Score=46.78  Aligned_cols=48  Identities=29%  Similarity=0.481  Sum_probs=44.9

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+||..|.+.++|..+. |+-||+++.||..++.++...+++.+++++.
T Consensus       144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~  191 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP  191 (1973)
T ss_pred             hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC
Confidence            47999999999999987 9999999999999999999999999998765

>KOG4371|consensus

Probab=94.63  E-value=0.069  Score=41.54  Aligned_cols=68  Identities=26%  Similarity=0.420  Sum_probs=54.4

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +.+.++...++|++..   ......++|+..+...+.|...|++++||++...+|.++.+.+..+..+.++
T Consensus      1249 ~~~~~~p~~~~~~~~~---~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1249 VMLLKKPMATLGLSLA---KRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred             heeeeccccccccccc---ccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence            4455556668888873   3355667999999999999999999999999999999999988777666554

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=94.21  E-value=0.11  Score=34.89  Aligned_cols=46  Identities=13%  Similarity=0.072  Sum_probs=29.3

Q ss_pred             EEEECCCChh--hhhCCCCCCCEEEEECCEECCCCCH-HHHHHHHHhCC
Q psy3490          40 IANLAPAGAA--ARCGQLNIGDQIIAVNGVSLVGLPL-STCQTYIKVNH   85 (88)
Q Consensus        40 I~~v~~g~~a--~~~g~l~~gd~i~~Vng~~~~~~~~-~~~~~~lk~~~   85 (88)
                      =-++.||..+  ...-.|+.||.+.+|||.++.+... .++.+.|++..
T Consensus       208 GYrl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~t  256 (276)
T PRK09681        208 GYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMD  256 (276)
T ss_pred             EEEECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCC
Confidence            3446666533  3333499999999999999986533 23444555443

>KOG1421|consensus

Probab=91.08  E-value=0.51  Score=35.68  Aligned_cols=33  Identities=33%  Similarity=0.625  Sum_probs=28.7

Q ss_pred             EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490          38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL   72 (88)
Q Consensus        38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~   72 (88)
                      +.+..+.++|||++  .|.+||.+++||++.+.++
T Consensus       305 LvV~~vL~~gpa~k--~Le~GDillavN~t~l~df  337 (955)
T KOG1421|consen  305 LVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDF  337 (955)
T ss_pred             EEEEEeccCCchhh--ccCCCcEEEEEcceehHHH
Confidence            68899999999997  4999999999998877543

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=89.25  E-value=2.1  Score=29.26  Aligned_cols=33  Identities=42%  Similarity=0.685  Sum_probs=28.8

Q ss_pred             EEEEECCCChhhhhCCCCCCCEEEEECCEECCCC
Q psy3490          39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL   72 (88)
Q Consensus        39 ~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~   72 (88)
                      .+..+...++|..++ ++.||.+.++|+..+...
T Consensus       132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~  164 (375)
T COG0750         132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW  164 (375)
T ss_pred             eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH
Confidence            444789999999998 999999999999999744

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=87.93  E-value=2  Score=28.58  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             CCCChhhhhCCCCCCCEEEEECCEECC
Q psy3490          44 APAGAAARCGQLNIGDQIIAVNGVSLV   70 (88)
Q Consensus        44 ~~g~~a~~~g~l~~gd~i~~Vng~~~~   70 (88)
                      .+++.=+..| |+.||..+++|+.+++
T Consensus       215 kd~slF~~sg-lq~GDIavaiNnldlt  240 (275)
T COG3031         215 KDGSLFYKSG-LQRGDIAVAINNLDLT  240 (275)
T ss_pred             CCcchhhhhc-CCCcceEEEecCcccC
Confidence            3344455566 9999999999999886

>KOG4407|consensus

Probab=87.39  E-value=1.2  Score=36.10  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             EEEEEECCCCCcccEEEEe---------------CCCC--------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECC
Q psy3490          10 EIVVVPKAKGEILGVVIVE---------------SGWG--------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG   66 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~---------------~~~~--------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng   66 (88)
                      +.+++.++...||||.++-               .|..        ...-.+++..+..+.++..+| +..+|.|..|||
T Consensus        47 ~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG  125 (1973)
T KOG4407|consen   47 KLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITG  125 (1973)
T ss_pred             ceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeecc
Confidence            5566787888899999742               0000        011146788899999999988 999999999999


Q ss_pred             EECCCCCHHHHHHHHHh
Q psy3490          67 VSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        67 ~~~~~~~~~~~~~~lk~   83 (88)
                      ..+.+.+ +.....+|.
T Consensus       126 ~e~~~~T-S~~~~~vk~  141 (1973)
T KOG4407|consen  126 LEPTSPT-SLPPYQVKA  141 (1973)
T ss_pred             cccCCCc-cccHHHHhh
Confidence            9887776 444444443

>KOG4371|consensus

Probab=85.84  E-value=0.94  Score=35.72  Aligned_cols=59  Identities=25%  Similarity=0.388  Sum_probs=41.6

Q ss_pred             CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          20 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        20 ~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.||..+.     +....+.++.....+.-.+ -.|++||.++.+||+.+++.-|.+++.+++.-
T Consensus      1158 ~~l~~~~a-----~~~~~~~~~~~~~~~~~~~-pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~ 1216 (1332)
T KOG4371|consen 1158 GSLGVQIA-----SLSGRVCIKQLTSEPAISH-PDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGG 1216 (1332)
T ss_pred             CCCCceec-----cCccceehhhcccCCCCCC-CCcchhhhhhhccceeeechhhHHHHHHHhcc
Confidence            47787774     1111245555544443333 34899999999999999999999999999854

>KOG3834|consensus

Probab=84.96  E-value=3.4  Score=29.58  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=37.7

Q ss_pred             cEEEEEECCCCCc---ccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEE
Q psy3490           9 SEIVVVPKAKGEI---LGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV   64 (88)
Q Consensus         9 ~~~~~i~~~~~~~---lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~V   64 (88)
                      .|++.|......+   ||++|.--.. ..-..-+-|.+|.+.+||+++|...-.|.|+-+
T Consensus        78 ~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~  137 (462)
T KOG3834|consen   78 VRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGI  137 (462)
T ss_pred             eEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecc
Confidence            3667777665556   8888842111 111224679999999999999944478998765

>KOG0792|consensus

Probab=83.05  E-value=0.74  Score=36.13  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             CCCcccEEEEeCCCCCC----CCcEEEEEEC-------------CCChhhh-hCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490          18 KGEILGVVIVESGWGSM----LPTVVIANLA-------------PAGAAAR-CGQLNIGDQIIAVNGVSLVGLPLSTCQT   79 (88)
Q Consensus        18 ~~~~lG~~i~~~~~~~~----~~~i~I~~v~-------------~g~~a~~-~g~l~~gd~i~~Vng~~~~~~~~~~~~~   79 (88)
                      ..+.+||.+. |+.+..    ..+..++++.             |+++|+. .-++..||.++.|||.++....|++.+.
T Consensus       714 ~~g~~g~~~~-g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs  792 (1144)
T KOG0792|consen  714 PPGRFGFNLK-GGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVS  792 (1144)
T ss_pred             CCcccccccc-chhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHH
Confidence            3457888886 333222    1246677777             8887754 4467789999999999999999999999


Q ss_pred             HHHhCCC
Q psy3490          80 YIKVNHH   86 (88)
Q Consensus        80 ~lk~~~~   86 (88)
                      +++....
T Consensus       793 ~irs~r~  799 (1144)
T KOG0792|consen  793 LIRSPRE  799 (1144)
T ss_pred             HHhhhhh
Confidence            9987653

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=82.49  E-value=4.5  Score=25.66  Aligned_cols=49  Identities=20%  Similarity=0.397  Sum_probs=35.3

Q ss_pred             EEEEEECCCCC-------cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEE
Q psy3490          10 EIVVVPKAKGE-------ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV   64 (88)
Q Consensus        10 ~~~~i~~~~~~-------~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~V   64 (88)
                      +.+.+...++.       ..|+.+..     ....+.|..+..||+|+++| +.-+..|.+|
T Consensus        94 k~v~lpl~~~~~g~eRL~~~GL~l~~-----e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v  149 (183)
T PF11874_consen   94 KTVLLPLGDGADGEERLEAAGLTLME-----EGGKVIVDEVEFGSPAEKAG-IDFDWEITEV  149 (183)
T ss_pred             EEEEEEcCCCCCHHHHHHhCCCEEEe-----eCCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence            55656654441       45777752     12238999999999999998 9999988776

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

>KOG1421|consensus

Probab=80.68  E-value=5.2  Score=30.62  Aligned_cols=45  Identities=20%  Similarity=0.108  Sum_probs=38.9

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++|+...-.||||.. + |+.-..|..|||+.+.  ++++-+.+++.-.
T Consensus       863 gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ip  907 (955)
T KOG1421|consen  863 GVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIP  907 (955)
T ss_pred             ceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCC
Confidence            699999999999998 4 9999999999999885  7788888887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
1u38_A	89	Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF		7e-24
1x45_A	98	Solution Structure Of The First Pdz Domain Of Amylo		7e-24
1u3b_A	185	Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF		1e-23
3suz_A	287	Crystal Structure Of Rat Mint2 Ppc Length = 287		1e-18
2yt7_A	101	Solution Structure Of The Pdz Domain Of Amyloid Bet		2e-18
1n7e_A	97	Crystal Structure Of The Sixth Pdz Domain Of Grip1		3e-05
1uew_A	114	Solution Structure Of The Forth Pdz Domain Of Human		2e-04
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		5e-04
2qt5_A	200	Crystal Structure Of Grip1 Pdz12 In Complex With Th		6e-04
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		9e-04

>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 89

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct: 5  VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Query: 72 LPLSTCQTYIK 82
          LPLSTCQ+ IK
Sbjct: 65 LPLSTCQSIIK 75

>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A, Member 1 Length = 98

Iteration: 1
 Score =  105 bits (261), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 62/75 (82%)
Query: 8  TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          +S  V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG 
Sbjct: 5  SSGDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 64
Query: 68 SLVGLPLSTCQTYIK 82
          SLVGLPLSTCQ+ IK
Sbjct: 65 SLVGLPLSTCQSIIK 79

>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 185

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct: 5  VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Query: 72 LPLSTCQTYIK 82
          LPLSTCQ+ IK
Sbjct: 65 LPLSTCQSIIK 75

>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A Member 3 Length = 101

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K +GE LGV +VESGWGS+LPT VIANL   G A R G L+IGD++ A+NG SLVG
Sbjct: 13 VHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVG 72
Query: 72 LPLSTCQTYIK 82
          LPL+ CQ  ++
Sbjct: 73 LPLAACQAAVR 83

>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 Length = 97

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 16 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
          K  G  LG+ I  SG       ++I++L   G A R G ++IGD+I+A+N  SL G PLS
Sbjct: 12 KRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLS 69
Query: 76 TC 77
Sbjct: 70 EA 71

>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 114

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 12 VVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          VV+ + + E  G VI+      ESG    +P   I  +     A RC +L +GD+I+AVN
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHK-IGRIIDGSPADRCAKLKVGDRILAVN 72
Query: 66 GVSLVGLPLSTCQTYIK 82
          G S++ +P +     IK
Sbjct: 73 GQSIINMPHADIVKLIK 89

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          + + N+ P GAA + G+L  GD++I VNGV LVG
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93

>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1 Peptide Length = 200

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 9  SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          S +V + K +G  LG+ +  SG         ++NL   G AAR  QL++GD I AVNG++
Sbjct: 8  STVVELMKKEGTTLGLTV--SGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN 65
Query: 69 L 69
          L
Sbjct: 66 L 66

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          V++ K   E LG+ I   G    +P ++I+ + P   A RCG L++GD I+AVNGV+L
Sbjct: 31 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-25
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	6e-18
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	7e-09
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	7e-18
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-17
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-15
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	2e-15
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	4e-15
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-10
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-15
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-13
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	9e-15
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-10
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	6e-14
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	9e-14
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-13
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-13
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	3e-13
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	4e-13
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-12
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-13
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	6e-13
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-12
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-12
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-12
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-12
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-12
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-12
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	4e-12
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	4e-12
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	4e-12
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	5e-12
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-12
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	6e-12
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	8e-12
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-11
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-11
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-11
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-11
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-11
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-11
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	3e-11
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-11
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-11
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	4e-11
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-11
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	4e-11
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	5e-11
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	5e-11
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	5e-11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	5e-11
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	6e-11
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	7e-11
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-10
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-10
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-10
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	1e-10
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	2e-10
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-10
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-10
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	2e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	2e-10
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-10
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	3e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-08
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-05
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	3e-10
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	3e-10
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	3e-10
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	4e-10
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-10
2fne_A	117	Multiple PDZ domain protein; structural protein, s	4e-10
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	4e-10
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	6e-10
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	6e-10
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	6e-10
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	7e-10
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	7e-10
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	7e-10
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	7e-10
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	7e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	7e-10
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	7e-10
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	8e-10
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	9e-10
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	9e-10
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-09
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	1e-09
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-09
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-09
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-09
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-09
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-09
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-09
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	3e-09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	4e-09
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	6e-09
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	8e-09
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-08
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-08
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	2e-08
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-08
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	5e-08
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	6e-08
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	9e-08
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	2e-07
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-07
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	3e-07
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	4e-07
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	5e-07
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	7e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	8e-07
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	8e-07
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	1e-06
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	1e-06
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-06
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-06
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-06
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-06
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	3e-06
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	3e-06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-06
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	3e-06
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	3e-06
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	3e-06
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	5e-06
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	6e-06
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	7e-06
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	7e-06
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	8e-06
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	8e-06
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	8e-06
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	9e-06
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	1e-05
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	1e-05
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-05
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-05
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-05
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	2e-05
2ego_A	96	General receptor for phosphoinositides 1- associat	2e-05
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-05
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-05
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	3e-05
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-05
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	4e-05
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	5e-05
2d90_A	102	PDZ domain containing protein 1; structural genomi	5e-05
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	5e-05
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	7e-05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	7e-05
3khf_A	99	Microtubule-associated serine/threonine-protein ki	8e-05
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-04
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-04
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-04
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	2e-04
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-04
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-04

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 88.6 bits (220), Expect = 4e-25
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
           V + K +GE LGV +VESGWGS+LPT VIANL   G A R G L+IGD++ A+NG SLV
Sbjct: 12 EVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71

Query: 71 GLPLSTCQTYIK 82
          GLPL+ CQ  ++
Sbjct: 72 GLPLAACQAAVR 83

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 75.4 bits (184), Expect = 6e-18
 Identities = 47/69 (68%), Positives = 59/69 (85%)

Query: 14  VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
           + K KGEILGVV+VESGWGS+LPTV++AN+   G AAR G+L+IGDQI+++NG SLVGLP
Sbjct: 210 LEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269

Query: 74  LSTCQTYIK 82
           L+TCQ  IK
Sbjct: 270 LATCQGIIK 278

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 50.0 bits (118), Expect = 7e-09
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 3   HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
              PVT+ ++  P  K             G  +   +I +L   G A R G + +G +II
Sbjct: 292 SCPPVTTVLIKRPDLKY----------QLGFSVQNGIICSLMRGGIAERGG-VRVGHRII 340

Query: 63  AVNGVSLVGLPLSTCQTYIK 82
            +NG S+V          + 
Sbjct: 341 EINGQSVVATAHEKIVQALS 360

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 70.9 bits (174), Expect = 7e-18
 Identities = 20/77 (25%), Positives = 39/77 (50%)

Query: 6  PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
           +  + V + + K E    + +E G  S +  VV++ +   GAA R G +  GD+I+A+N
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72

Query: 66 GVSLVGLPLSTCQTYIK 82
          G  +    L+  +  ++
Sbjct: 73 GKIVTDYTLAEAEAALQ 89

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 68.9 bits (169), Expect = 2e-17
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 3  HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
          H +     ++   K   E +G+ +  +   S      +A +   G   R G L++GD+I+
Sbjct: 7  HHSGHMVRLIQFEKVTEEPMGICLKLNEKQS----CTVARILHGGMIHRQGSLHVGDEIL 62

Query: 63 AVNGVSLVGLPLSTCQTYIK 82
           +NG ++    +   Q  +K
Sbjct: 63 EINGTNVTNHSVDQLQKAMK 82

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 64.7 bits (158), Expect = 1e-15
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +V   K   E +G+ +  +         ++A +   G   R G L++GD+I  +NG+S+ 
Sbjct: 4  LVQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

Query: 71 GLPLSTCQTYIK 82
             +   Q  ++
Sbjct: 60 NQTVEQLQKMLR 71

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 64.8 bits (158), Expect = 2e-15
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 3  HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
          H    T +IV + KA+   LG  +          +V+I+ +   GAA + G L+ GD+++
Sbjct: 20 HYGGETVKIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVL 74

Query: 63 AVNGVSLVGLPLSTCQTYIK 82
           +NG+ + G  ++     + 
Sbjct: 75 EINGIEIRGKDVNEVFDLLS 94

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 65.5 bits (160), Expect = 4e-15
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 6  PVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
           +  E + + +     LG  I    ++      P++ I  + P GAAA+ G+L + D I+
Sbjct: 3  SMEYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61

Query: 63 AVNGVSLVGLPLSTCQTYIK 82
           VN V +  +  S     +K
Sbjct: 62 FVNEVDVREVTHSAAVEALK 81

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 3   HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGD 59
              P    + +      + LG  I        +P    + +  +   GAA + G+L IGD
Sbjct: 94  RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGD 153

Query: 60  QIIAVNGVSLVGLPLSTCQTYIK 82
           +I+AVN V L  +        +K
Sbjct: 154 KILAVNSVGLEDVMHEDAVAALK 176

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 65.6 bits (160), Expect = 5e-15
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          VV+        G+ +  S + +   +   +I+ +     A RCG L IGD+++A+NG+  
Sbjct: 10 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPT 69

Query: 70 VGLPLSTCQTYIK 82
                     ++
Sbjct: 70 EDSTFEEANQLLR 82

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 59.4 bits (144), Expect = 9e-13
 Identities = 16/71 (22%), Positives = 32/71 (45%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V +PK     LG+ I           +VI+++     A R G L +GD+++A++ + L  
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 170

Query: 72  LPLSTCQTYIK 82
             +      ++
Sbjct: 171 CSMEDAVQILQ 181

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 64.8 bits (158), Expect = 9e-15
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           +V + K +G  LG+ +   G         ++NL   G AAR  QL++GD I AVNG++L
Sbjct: 9  TVVELMKKEGTTLGLTVS--GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66

Query: 70 VGLPLSTCQTYIK 82
                   + +K
Sbjct: 67 AKFRHDEIISLLK 79

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 53.6 bits (129), Expect = 1e-10
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 13  VVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
           V    +G   G VI          +  VVI  + P G A R G +  GD++++V+G+ L+
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLL 169

Query: 71  GLPLSTCQTYIK 82
           G   +   + +K
Sbjct: 170 GTTHAEAMSILK 181

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 60.9 bits (148), Expect = 6e-14
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +V + K  G  LG+ +  +        + I  + PA    R G L+ GD I++++G S+ 
Sbjct: 18 MVEIVKTPGSALGISLT-TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76

Query: 71 GL 72
            
Sbjct: 77 HC 78

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 60.2 bits (146), Expect = 9e-14
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 2  LHLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 61
          L+   +    V + K    ++G+ I   G     P + I  +     AA  G +  GD+I
Sbjct: 18 LYFQSMVPGKVTLQKDAQNLIGISIG--GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEI 75

Query: 62 IAVNGVSLVGL 72
            VNG S+ G 
Sbjct: 76 TGVNGRSIKGK 86

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 59.3 bits (144), Expect = 2e-13
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K  G+ LG+ +  +  G       IA+L          +L  GD I   NG +L G
Sbjct: 6  VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 60

Query: 72 LPLSTCQTYIK 82
          LP   C    K
Sbjct: 61 LPFQVCYALFK 71

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 58.9 bits (143), Expect = 2e-13
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K  G+ LG+ +  +  G       IA+L          +L  GD I   NG +L G
Sbjct: 12 VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 66

Query: 72 LPLSTCQTYIK 82
          LP        K
Sbjct: 67 LPFQVSYALFK 77

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 58.9 bits (143), Expect = 3e-13
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 2  LHLNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIG 58
          L+   +  ++V + K  GE LG+ +          +   + + ++ P G  +R G++  G
Sbjct: 18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDL--PIYVISVEPGGVISRDGRIKTG 75

Query: 59 DQIIAVNGVSLVGL 72
          D ++ V+GV L  +
Sbjct: 76 DILLNVDGVELTEV 89

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 60.7 bits (147), Expect = 4e-13
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 7  VTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
            ++ +++      + +GV++       +    VI ++ P G  A   +L I D I  +N
Sbjct: 15 KPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDIN 74

Query: 66 GVSLVGLPLSTCQ 78
          G  +    ++T +
Sbjct: 75 GTPIHVGSMTTLK 87

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 58.4 bits (141), Expect = 3e-12
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 12  VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
           V + K  G+ LG+ +  +  G       IA+L          +L  GD I   NG +L G
Sbjct: 117 VDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 171

Query: 72  LPLSTCQTYIK 82
           LP   C    K
Sbjct: 172 LPFQVCYALFK 182

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 58.6 bits (142), Expect = 5e-13
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 12 VVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          VV+ + + E  G VI+      ESG    +P   I  +     A RC +L +GD+I+AVN
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILAVN 72

Query: 66 GVSLVGLPLSTCQTYIK 82
          G S++ +P +     IK
Sbjct: 73 GQSIINMPHADIVKLIK 89

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 59.5 bits (144), Expect = 6e-13
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V++ K +   +G+ +     G     + +  +     A+  G L  GDQ++ +NG +  G
Sbjct: 8  VILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENCAG 61

Query: 72 LPLSTCQTYIK 82
                   +K
Sbjct: 62 WSSDKAHKVLK 72

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 57.3 bits (139), Expect = 1e-12
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 12 VVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          V + K   +  G+ IV    +    +    + I  + P   A  CG+L +GD+I+++NG 
Sbjct: 9  VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGK 68

Query: 68 SLVGL 72
           +   
Sbjct: 69 DVRNS 73

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 57.5 bits (139), Expect = 2e-12
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 6  PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          P     V + K    ++G+ I   G       + I  +     AA  G +  GD+I  VN
Sbjct: 17 PTVPGKVTLQKDAQNLIGISIG-GGAQYCPC-LYIVQVFDNTPAALDGTVAAGDEITGVN 74

Query: 66 GVSLVGL 72
          G S+ G 
Sbjct: 75 GRSIKGK 81

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          V + +  G+ LG+ IV    +        + + ++ P  AA   G + + D+I+AV+GV+
Sbjct: 19 VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78

Query: 69 LVGLP 73
          + G  
Sbjct: 79 IQGFA 83

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 56.7 bits (137), Expect = 2e-12
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V++ K   E LG+ I   G    +P ++I+ + P   A RCG L++GD I+AVNGV+L  
Sbjct: 31 VLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88

Query: 72 L 72
           
Sbjct: 89 T 89

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 56.2 bits (136), Expect = 3e-12
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
           V++ K   E LG+ I   G    +P ++I+ + P   A RCG L++GD I+AVNGV+L 
Sbjct: 12 KVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69

Query: 71 GL 72
            
Sbjct: 70 DT 71

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 56.3 bits (136), Expect = 4e-12
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 2  LHLNPVTSEIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQ 54
          L+   +    V + +   + LG+ IV           G ++  + I ++     A + G 
Sbjct: 18 LYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGT 77

Query: 55 LNIGDQIIAVNGVSLVGL 72
          L  GD+I+ V+G+ L   
Sbjct: 78 LKPGDRIVEVDGMDLRDA 95

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 55.7 bits (135), Expect = 4e-12
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 8  TSEIVVVPKAKG-EILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
          +   V V   K     G VI            P VVI ++ P G A R G +  GD++++
Sbjct: 1  SMRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP-VVITSVRPGGPADREGTIKPGDRLLS 59

Query: 64 VNGVSLVGL 72
          V+G+ L+G 
Sbjct: 60 VDGIRLLGT 68

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 55.5 bits (134), Expect = 4e-12
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +V + K  GE LGV     G       +VIA +   G  A+ G L++GD I  VNG   V
Sbjct: 9  MVGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP-V 62

Query: 71 GLPLSTCQTYIK 82
          G      Q  ++
Sbjct: 63 GSDPRALQELLR 74

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 55.9 bits (135), Expect = 4e-12
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K K   LG ++ E       P V+I++L   GAA + G +  GD I+AVN   LV 
Sbjct: 5  VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61

Query: 72 L 72
          L
Sbjct: 62 L 62

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.5 bits (134), Expect = 5e-12
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          +V  K     LG+ I   G  +  P   I  +   G+A  CGQL +G  I+ VNG++L G
Sbjct: 9  LVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67

Query: 72 L 72
           
Sbjct: 68 K 68

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 55.8 bits (135), Expect = 5e-12
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          V + K   + LG+ I     S  G +   + IA + P G AA+  +L +GD+I+ + G S
Sbjct: 28 VEMKKGPTDSLGISIAGGVGSPLGDV--PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85

Query: 69 LVGL 72
            G+
Sbjct: 86 TEGM 89

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 55.4 bits (134), Expect = 6e-12
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 1  MLHLNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNI 57
           L  +    EI+ V   K   +G+ IV    +G   +   + + ++   GAA   G+L  
Sbjct: 2  PLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKL--GIYVKSVVKGGAADVDGRLAA 59

Query: 58 GDQIIAVNGVSLVGL 72
          GDQ+++V+G SLVGL
Sbjct: 60 GDQLLSVDGRSLVGL 74

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 55.5 bits (134), Expect = 8e-12
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           + ++ K +G  LG  +   G       + +  + P G A++ G +  G++++++NG SL
Sbjct: 17 HVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 75

Query: 70 VGL 72
           G 
Sbjct: 76 KGT 78

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 10 EIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
            V + +   + LG+ IV           G ++  + I ++     A + G L  GD+I+
Sbjct: 6  RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65

Query: 63 AVNGVSLVGL 72
           V+G+ L   
Sbjct: 66 EVDGMDLRDA 75

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 54.9 bits (132), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 9  SEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          ++++      G + LG+V++++G     P + I++L   GAAA  G L  GD +I+V   
Sbjct: 26 NKVIQTKLTVGNLGLGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHA 80

Query: 68 SLVGLPLS 75
          +++G  L 
Sbjct: 81 NVLGYTLR 88

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 54.8 bits (132), Expect = 2e-11
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 10  EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
           +   VP+  G +LG+ +V    +  G +     I  +     A   G L  GD+++  NG
Sbjct: 38  KDGSVPRDSGAMLGLKVVGGKMTESGRL--CAFITKVKKGSLADTVGHLRPGDEVLEWNG 95

Query: 67  VSLVGL 72
             L G 
Sbjct: 96  RLLQGA 101

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 54.0 bits (130), Expect = 2e-11
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           ++ V K  G  LG+ I+     +  P V I  + P G   + G+L  GDQ++++N  S+
Sbjct: 17 RVITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESM 74

Query: 70 VGL 72
          +G+
Sbjct: 75 IGV 77

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 54.5 bits (131), Expect = 2e-11
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K K   LG ++ E       P V+I++L   GAA + G +  GD I+AVN   LV 
Sbjct: 12 VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68

Query: 72 L 72
          L
Sbjct: 69 L 69

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 56.3 bits (135), Expect = 2e-11
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 10  EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
             V V KA    LG+ I   G  + +P ++I+ +    AA +   L +GD I++VNG  L
Sbjct: 79  RRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDL 136

Query: 70  VGLP 73
               
Sbjct: 137 SSAT 140

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          ++ +  +  GE LG+ +V     +  P V I +L   G AA+ G+L+  D+++A+NG  L
Sbjct: 6  QVALHKRDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62

Query: 70 VGL 72
             
Sbjct: 63 KYG 65

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 53.4 bits (129), Expect = 3e-11
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V V KA    LG+ I   G  + +P ++I+ +    AA +   L +GD I++VNG  L  
Sbjct: 8  VTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65

Query: 72 L 72
           
Sbjct: 66 A 66

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 53.9 bits (130), Expect = 3e-11
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
          + + KA GE LG+ I        G+        + I+ ++P GAA R G+L +G +++ V
Sbjct: 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72

Query: 65 NGVSLVGL 72
          N  SL+GL
Sbjct: 73 NQQSLLGL 80

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 54.0 bits (130), Expect = 3e-11
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 5  NPVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
            +  E+ ++   K +  LG+ +          ++ +  + P G AA  G++ IGD+++ 
Sbjct: 20 ADLPGELHIIELEKDKNGLGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLE 78

Query: 64 VNGVSLVGL 72
          +N   L G 
Sbjct: 79 INNQILYGR 87

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 53.9 bits (130), Expect = 3e-11
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
           V  + +++  +KG   LG+ IV  G  + L  +VI  +   GAAAR G+L  GDQI+ V
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEV 71

Query: 65 NGVSLVGLP 73
          NGV L    
Sbjct: 72 NGVDLRNSS 80

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 53.4 bits (129), Expect = 4e-11
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 61
          P   +I  V  AK +  LG+ +     +        + +  + P GAA   G+++ GD++
Sbjct: 1  PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRV 58

Query: 62 IAVNGVSLVGL 72
          +AVNGVSL G 
Sbjct: 59 LAVNGVSLEGA 69

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.6 bits (129), Expect = 4e-11
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 3  HLNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 59
          H     +         G  LG+ IV   E    S      IA + P G+A + G+L  G 
Sbjct: 13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGM 72

Query: 60 QIIAVNGVSLVGL 72
          Q++  NG+ L   
Sbjct: 73 QVLEWNGIPLTSK 85

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 53.5 bits (129), Expect = 4e-11
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
          E+  V   K    LG+ I+  G G+ +      + +  +   GAA R G++ + D ++ V
Sbjct: 4  ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63

Query: 65 NGVSLVGL 72
          +G SLVG+
Sbjct: 64 DGTSLVGV 71

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 54.6 bits (131), Expect = 5e-11
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 10  EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
           E+  V   K    LG+ I+  G G+ +      + +  +   GAA R G++ + D ++ V
Sbjct: 80  ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139

Query: 65  NGVSLVGL 72
           +G SLVG+
Sbjct: 140 DGTSLVGV 147

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 53.2 bits (128), Expect = 5e-11
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 10 EIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
           IV + +     LG+ IV           G  L  + I  +     A +   L  GD+I+
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76

Query: 63 AVNGVSLVGL 72
           V+GV L   
Sbjct: 77 EVSGVDLQNA 86

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 53.1 bits (128), Expect = 5e-11
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 6  PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
           +   + +        LG+ I   G       ++I++L   G A R G ++IGD+I+A+N
Sbjct: 4  AIIYTVELKRYGGP--LGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59

Query: 66 GVSLVGLPLS 75
            SL G PLS
Sbjct: 60 SSSLKGKPLS 69

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 53.1 bits (128), Expect = 5e-11
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 10 EIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
            V + + K    LG+ I    +         + + +L P  AAA  G++   D+I+ V+
Sbjct: 14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVD 73

Query: 66 GVSLVGL 72
           V++ G+
Sbjct: 74 DVNVQGM 80

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 52.6 bits (127), Expect = 6e-11
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          + + K  G+ LG+ IV          V ++++   G A   G+L  GDQI+ VNG  +  
Sbjct: 8  IGLQKKPGKGLGLSIVG---KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64

Query: 72 L 72
           
Sbjct: 65 A 65

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 52.3 bits (126), Expect = 7e-11
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 7  VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          +  +I +  K  G   G  I+  G     P + I ++ P GAA   G+L  GD++I+V+G
Sbjct: 2  MEQDIFLWRKETG--FGFRIL-GGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDG 57

Query: 67 VSLVGL 72
            ++G 
Sbjct: 58 TPVIGK 63

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 51.9 bits (125), Expect = 1e-10
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 8  TSEIVVVPKAKGEI-LGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
           SE   V   K    LG+ I             + + ++  + A    G++ IGDQIIAV
Sbjct: 2  MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61

Query: 65 NGVSLVGL 72
          +G +L G 
Sbjct: 62 DGTNLQGF 69

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 51.9 bits (125), Expect = 1e-10
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          LG+ IV  G  ++L  ++I  +   GAA + G+L  GDQI+ VNG+ L    
Sbjct: 17 LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          VV+        G+ +  S + +   +   +I+ +     A RCG L IGD+++A+NG+  
Sbjct: 19 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPT 78

Query: 70 VGLPLSTCQTYIK 82
                     ++
Sbjct: 79 EDSTFEEANQLLR 91

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          + +  +    LGV +        G+ L  + I ++   GAA + G+L + DQ+IAVNG +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87

Query: 69 LVGL 72
          L+G 
Sbjct: 88 LLGK 91

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 51.9 bits (125), Expect = 2e-10
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
          E+  V   K E  LG+ I+  G G+        + +  +   GAA R G++ + DQI+ V
Sbjct: 9  ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68

Query: 65 NGVSLVGL 72
          +G+SLVG+
Sbjct: 69 DGISLVGV 76

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 52.0 bits (125), Expect = 2e-10
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIG 58
          P   +I  V  AK +  LG+ +        + T      + +  + P GAA   G+++ G
Sbjct: 5  PKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64

Query: 59 DQIIAVNGVSLVGL 72
          D+++AVNGVSL G 
Sbjct: 65 DRVLAVNGVSLEGA 78

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 51.7 bits (124), Expect = 2e-10
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V +   K   LG+ IV          + I ++   GA A  G++  GD ++ VN ++   
Sbjct: 9  VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68

Query: 72 L 72
          +
Sbjct: 69 M 69

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 51.6 bits (124), Expect = 2e-10
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 5  NPVTSEIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 60
          +  +  +  V   +G   LG+ ++    +  G+  P + I  L P   AA  G+L++GD+
Sbjct: 3  SGSSGYVFTVELERGPSGLGMGLIDGMHTHLGA--PGLYIQTLLPGSPAAADGRLSLGDR 60

Query: 61 IIAVNGVSLVGL 72
          I+ VNG SL+GL
Sbjct: 61 ILEVNGSSLLGL 72

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 52.1 bits (125), Expect = 2e-10
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 15 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
           + KG+ +   +     G+G            + I +L   G AA  G++  GD I++VN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72

Query: 66 GVSLVGL 72
             ++G 
Sbjct: 73 DTCVLGH 79

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.5 bits (124), Expect = 2e-10
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + +  L   G A RCG+L +GD ++ +NG S  GL
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 51.7 bits (124), Expect = 3e-10
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 5  NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQII 62
                + +   + G  LG  +   G GS+     + I  +    A+ +   +  GD+I+
Sbjct: 27 EATVCTVTLEKMSAG--LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEIL 83

Query: 63 AVNGVSLVGL 72
           + G ++ GL
Sbjct: 84 QLGGTAMQGL 93

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 8   TSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
             E + + +     LG  I    ++      P++ I  + P GAAA+ G+L + D I+ V
Sbjct: 59  EYEEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 117

Query: 65  NGVSLVGLPLSTCQTYIK 82
           N V +  +  S     +K
Sbjct: 118 NEVDVREVTHSAAVEALK 135

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 1   MLHLNPVTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGD 59
           +L    +  E   +   +G   LG  IV    G     + I+ +   G A   G+L  GD
Sbjct: 298 LLGEEDIPREPRRIVIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGD 354

Query: 60  QIIAVNGVSLVGLPLSTCQTYIK 82
           QI++VNGV L           +K
Sbjct: 355 QILSVNGVDLRNASHEQAAIALK 377

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 38  VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
           + +  +   GAA + G+L IGD+I+AVN V L  +        +K
Sbjct: 186 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 230

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 5  NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
               ++ +     G   G  I+  G     P ++I  +   G+A R G+L+ GD+++ V
Sbjct: 7  GYKELDVHLRRMESG--FGFRIL-GGDEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYV 62

Query: 65 NGVSLVGLP 73
          +G+ + G  
Sbjct: 63 DGIPVAGKT 71

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 51.6 bits (124), Expect = 3e-10
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          E+  + K     LG  +V       G +   + +  +     A R G+L   DQI+A+NG
Sbjct: 22 EVFELLKPPSGGLGFSVVGLRSENRGEL--GIFVQEIQEGSVAHRDGRLKETDQILAING 79

Query: 67 VSL 69
           +L
Sbjct: 80 QAL 82

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 51.4 bits (123), Expect = 3e-10
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          E+ +      + LG+ +           + I+ + P   AA+ G++  GD+II +NG+ +
Sbjct: 22 EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81

Query: 70 VG 71
            
Sbjct: 82 QN 83

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 51.2 bits (123), Expect = 3e-10
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + +  LA  G A R G++ IGD+I+ +NG +   +  S     IK
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 95

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 50.5 bits (121), Expect = 4e-10
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          ++ +V  AK E  G+ +           + +  ++    AAR G +  GD ++ +NG   
Sbjct: 5  KVTLVKSAKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56

Query: 70 VGLPLSTCQTYIK 82
            + L+  +T I+
Sbjct: 57 ENMSLTDAKTLIE 69

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 51.3 bits (123), Expect = 4e-10
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          E + + +     LG  +V       G +   + + ++ P   A R  +L   DQI+A+N 
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKV--DIFVKDVQPGSVADRDQRLKENDQILAINH 84

Query: 67 VSL 69
            L
Sbjct: 85 TPL 87

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.2 bits (123), Expect = 4e-10
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + +  +   GAA+  G+L  GDQIIAVNG SL G+
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGV 89

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 51.0 bits (122), Expect = 4e-10
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
          ++ +   +    G  +   G+   +P V+++ +AP   A  C  +LN GDQ++ +NG  +
Sbjct: 20 LIRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 77

Query: 70 VGL 72
             
Sbjct: 78 AEH 80

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 50.4 bits (121), Expect = 6e-10
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           + +   AKG   G  I   G    +  + +  LA  G A R G++ +GDQII +NG S 
Sbjct: 14 TVDMEKGAKG--FGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69

Query: 70 VGL 72
            +
Sbjct: 70 RDM 72

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 49.6 bits (119), Expect = 6e-10
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          ++ +V   K E  G+ +           + +  ++    AAR G +  GD ++ +NG   
Sbjct: 3  KVTLVKSRKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 54

Query: 70 VGLPLSTCQTYIK 82
            + L+  +T I+
Sbjct: 55 ENMSLTDAKTLIE 67

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 50.0 bits (120), Expect = 6e-10
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          I+ + K   E LG  I +         +++A +   GAA R G +++GD++  VNG+ + 
Sbjct: 7  IIRLVK-NREPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVE 62

Query: 71 GLPLSTCQTYIK 82
                    + 
Sbjct: 63 DKRPEEIIQILA 74

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 50.5 bits (121), Expect = 7e-10
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 2  LHLNPVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 60
          L    +  E   +   +G   LG  IV  G G     + I+ +   G A   G+L  GDQ
Sbjct: 6  LGEEDIPREPRRIVIHRGSTGLGFNIV--G-GEDGEGIFISFILAGGPADLSGELRKGDQ 62

Query: 61 IIAVNGVSLVGL 72
          I++VNGV L   
Sbjct: 63 ILSVNGVDLRNA 74

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 50.5 bits (121), Expect = 7e-10
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
           +    +     K  +  G  I+  G       + + ++ P G AA+ G++  GD I+ +
Sbjct: 15 QLKGTFLSTTLKKSNMGFGFTII--GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72

Query: 65 NGVSLVGL 72
          N V ++G 
Sbjct: 73 NEVCVLGH 80

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 50.0 bits (120), Expect = 7e-10
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          EIV+     G  LG  I    ++      P + I  + P GAAA  G+L + D ++ VN 
Sbjct: 7  EIVLERGNSG--LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64

Query: 67 VSLVGL 72
          V +  +
Sbjct: 65 VDVSEV 70

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 50.1 bits (120), Expect = 7e-10
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 23 GVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          G   V++  GS    + ++ +  +G AA+ G L I D+II VNG  L   
Sbjct: 28 GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 50.5 bits (121), Expect = 7e-10
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + + N+ P GAA + G+L  GD++I VNGV LVG 
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 50.5 bits (121), Expect = 7e-10
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 22 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          LG  IV   +  + S    + ++ +   GAAA  G+L  GD+I++VNG  L  L
Sbjct: 30 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 83

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 50.6 bits (121), Expect = 7e-10
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6   PVTSEIVVVPKAK-GEILGVVIVESGWGSMLPT-------VVIANLAPAGAAARCGQLNI 57
           P T   V + K    + LG  I +     + P        + I+ L P G A   G L +
Sbjct: 27  PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86

Query: 58  GDQIIAVNGVSLVGL 72
            D+++ VNG+ + G 
Sbjct: 87  NDEVLEVNGIEVSGK 101

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 50.0 bits (120), Expect = 8e-10
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          EI +     G  LG  IV   +  + S    + ++ +   GAAA  G+L  GD+I++VNG
Sbjct: 10 EINLTRGPSG--LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67

Query: 67 VSLVGL 72
            L  L
Sbjct: 68 QDLKNL 73

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 50.1 bits (120), Expect = 9e-10
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 5  NPVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
                +  V        LG  IV    G     VV+  + P G A R G+L  GD I+ 
Sbjct: 10 TVCWGHVEEVELINDGSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILK 65

Query: 64 VNGVSLVGL 72
          + G ++ G+
Sbjct: 66 IGGTNVQGM 74

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 49.6 bits (119), Expect = 9e-10
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 8  TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          +    +   ++G   G  +V  G       + I +L   G AA  G++  GD I++VN  
Sbjct: 1  SIHTKLRKSSRG--FGFTVV--GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 56

Query: 68 SLVGL 72
           ++G 
Sbjct: 57 CVLGH 61

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 49.7 bits (119), Expect = 1e-09
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          EI ++   KG  LG  I     +       ++ +  +   GAA + G+L IGD+++AVN 
Sbjct: 6  EIKLIKGPKG--LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63

Query: 67 VSLVGL 72
          VSL  +
Sbjct: 64 VSLEEV 69

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 49.6 bits (119), Expect = 1e-09
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + ++ +A  GAA R G L +GD+++++NGV +   
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEA 74

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 49.7 bits (119), Expect = 1e-09
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 8  TSEIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
          +  +V +   KG   LG  I     +       ++ +  +   GAA + G+L +GD+++ 
Sbjct: 22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81

Query: 64 VNGVSLVGL 72
          VN  SL  +
Sbjct: 82 VNNYSLEEV 90

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 49.2 bits (118), Expect = 1e-09
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
           +  E   +   +G   LG  IV  G G     + I+ +   G A   G+L  GDQI++V
Sbjct: 7  DIPREPRRIVIHRGSTGLGFNIV--G-GEXGEGIFISFILAGGPADLSGELRKGDQILSV 63

Query: 65 NGVSLVGL 72
          NGV L   
Sbjct: 64 NGVDLRNA 71

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 8  TSEIVVVPKAKGEI-LGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQIIA 63
          + E+ +V   K    LG  I+      + PT   +VI +L   G A R G L  GD++++
Sbjct: 13 SPEVKIVELVKDCKGLGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVS 71

Query: 64 VNGVSLVGLPLS 75
          VN   L    L+
Sbjct: 72 VNEYCLDNTSLA 83

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 49.2 bits (118), Expect = 2e-09
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + + N+ P GAA + G+L  GD++I VNGV L G 
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK 75

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
              E   +   KG   LG  IV  G G     + ++ +   G A   G+L  GD+I++V
Sbjct: 11 GDAREPRKIILHKGSTGLGFNIV--G-GEDGEGIFVSFILAGGPADLSGELRRGDRILSV 67

Query: 65 NGVSLVGL 72
          NGV+L   
Sbjct: 68 NGVNLRNA 75

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 49.5 bits (118), Expect = 2e-09
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
          ++ +   +    G  +   G+   +P V+++ +AP   A  C  +LN GDQ++ +NG  +
Sbjct: 18 LIRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 75

Query: 70 VGL 72
             
Sbjct: 76 AEH 78

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 48.8 bits (117), Expect = 2e-09
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + I  +   GAA + G+L IGD+++AVN  +L  +
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDV 69

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 48.8 bits (117), Expect = 2e-09
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          LG  I+  G     P + I+ + P G A R G L  GDQ+++VNGVS+ G 
Sbjct: 18 LGFNIM-GGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 66

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 48.2 bits (115), Expect = 3e-09
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
           V V K   + LG+ I ++G G       I  +   G       + +GD I ++NG ++V
Sbjct: 8  EVNVYK-SEDSLGLTITDNGVGY----AFIKRIKDGGVIDSVKTICVGDHIESINGENIV 62

Query: 71 GL 72
          G 
Sbjct: 63 GW 64

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 47.7 bits (114), Expect = 4e-09
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 21 ILGVVIVESGWGSML-----PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS 75
          ++GV++++S             + +  +   G A + G L+ GD I+ +NG     + L+
Sbjct: 1  MIGVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT 60

Query: 76 TCQTYIK 82
            +  I+
Sbjct: 61 DARKLIE 67

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.7 bits (114), Expect = 6e-09
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 8  TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          + + V V    G   G  +   G     P + ++ +   G AA   ++  GD+++ +NG 
Sbjct: 9  SFQYVPVQLQGGAPWGFTLK-GGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNINGT 66

Query: 68 SLVG 71
           L G
Sbjct: 67 PLYG 70

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 47.9 bits (114), Expect = 8e-09
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 4  LNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
          L     + V +    G  LG+ I   G    L  + I  + P   A   G L +GDQI+ 
Sbjct: 16 LQGGDEKKVNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILE 72

Query: 64 VNGVSLVGL 72
          VNG S + +
Sbjct: 73 VNGRSFLNI 81

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 47.0 bits (112), Expect = 1e-08
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          IV + K  G  LG  I   G  S L  + I+ + P   A R G L  GDQ++AVN V   
Sbjct: 18 IVTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74

Query: 71 GL 72
           +
Sbjct: 75 DI 76

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 47.5 bits (113), Expect = 1e-08
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          + V +       LG  I  SG       + I+++ P   +A  G L IGDQI+ VNGV  
Sbjct: 17 KKVFISLVGSRGLGCSIS-SGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVEVNGVDF 73

Query: 70 VGL 72
            L
Sbjct: 74 SNL 76

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 12  VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
           V + +   E LG+ +    E G G     + I++L   G A   G L +GD+I+ +NG S
Sbjct: 88  VRLDRLHPEGLGLSVRGGLEFGCG-----LFISHLIKGGQADSVG-LQVGDEIVRINGYS 141

Query: 69  LVGL 72
           +   
Sbjct: 142 ISSC 145

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 46.3 bits (110), Expect = 3e-08
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 5  NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIG 58
          + +  + + V   K   LG  I     G   P       + +  + P G A+    L  G
Sbjct: 6  HELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPG 63

Query: 59 DQIIAVNGVSLVGL 72
          D+II  NG S + +
Sbjct: 64 DKIIQANGYSFINI 77

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 46.0 bits (109), Expect = 5e-08
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           + +V   KG+ +G+ +     G     + +A +     AA+ G L  GDQI+ VN V  
Sbjct: 29 SMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 83

Query: 70 VGL 72
            +
Sbjct: 84 TNI 86

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 45.0 bits (107), Expect = 6e-08
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V V K+    LG  +   G    L  + ++ +    +A R G L +GD+I  VNG+SL  
Sbjct: 14 VRVEKSPAGRLGFSVR-GGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSLES 70

Query: 72 LPLSTCQTYIKVNHHL 87
            + +    +  +  L
Sbjct: 71 TTMGSAVKVLTSSSRL 86

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 44.3 bits (105), Expect = 9e-08
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 6  PVTSEIVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
          PV    V + K +  E  G  + +   G +   V + N+ PAG     G L   D+++ V
Sbjct: 4  PVELHKVTLYKDSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59

Query: 65 NGVSLVGLP 73
          N V      
Sbjct: 60 NHVRTRDFD 68

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + I+ ++  G AAR G + +GD+++ VNGV+L G 
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 69

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 43.9 bits (104), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          + I+ ++  G AAR G + +GD+++ VNGV+L G 
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGA 81

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 43.6 bits (103), Expect = 3e-07
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 12 VVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          V + K      G+ +        + +   ++VI+++ P G A   G L   D+++ VNG 
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGT 75

Query: 68 SLVGL 72
           +  +
Sbjct: 76 PMEDV 80

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 9  SEIVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQII 62
          S  + V   K   LG  I     G   P       + +  + P G A+    L  GD+II
Sbjct: 2  SMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKII 59

Query: 63 AVNGVSLVGL 72
            NG S + +
Sbjct: 60 QANGYSFINI 69

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 42.7 bits (101), Expect = 5e-07
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 10 EIVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
            V + +A G   G+ I        + S   ++VI+++   G A   GQL   D++  VN
Sbjct: 9  HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVN 66

Query: 66 GVSLVGLP 73
          GVS+  + 
Sbjct: 67 GVSMDNVE 74

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 44.0 bits (103), Expect = 7e-07
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           + +V   KG+ +G+ +     G     + +A +     AA+ G L  GDQI+ VN V  
Sbjct: 9  SMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 63

Query: 70 VG 71
            
Sbjct: 64 TN 65

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 42.3 bits (100), Expect = 8e-07
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 10 EIVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
           +V + +AK    LG  I    E G G     + ++ + P   A + G L +GDQI+ VN
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVG-----IYVSLVEPGSLAEKEG-LRVGDQILRVN 63

Query: 66 GVSLVGL 72
            SL  +
Sbjct: 64 DKSLARV 70

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 42.0 bits (99), Expect = 8e-07
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          P + +A++     A     L + D+IIA+N            +  + 
Sbjct: 28 PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMA 73

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 41.5 bits (98), Expect = 1e-06
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + I+ L P G AA+ G + +GD +++++G +   L     Q  I+
Sbjct: 29 LSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR 72

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 13 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          +V   KG+ +G+ +     G     + +A +     AA+ G L  GDQI+ VN V    +
Sbjct: 4  LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
          P   E   V   KG   LG+ IV          + ++ +     A + G L  GDQ++  
Sbjct: 15 PYVEEPRHVKVQKGSEPLGISIV----SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEF 69

Query: 65 NGVSLVGL 72
          NG++L   
Sbjct: 70 NGINLRSA 77

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 41.1 bits (97), Expect = 2e-06
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH 86
          + I+ + P   AA+   L+ GD ++A++GV+   +     Q  IK   +
Sbjct: 27 LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY 74

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 3  HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
           ++P T   + + K     +G +              I ++    +AAR G L     I 
Sbjct: 2  AMDPRT---ITMHKDSTGHVGFIFKNG---------KITSIVKDSSAARNG-LLTEHNIC 48

Query: 63 AVNGVSLVGLP 73
           +NG +++GL 
Sbjct: 49 EINGQNVIGLK 59

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 22 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
           G ++ E       P   +  + P   A + G +  GD+++AV G S+ GL 
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG 66

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 40.7 bits (96), Expect = 2e-06
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + I++L   G AA+   + IGD +++++G++  G+     Q  IK
Sbjct: 29 LTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIK 72

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 41.6 bits (97), Expect = 3e-06
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 10 EIVVVPKAKGEILGVVIV----ESGWGSMLPT------VVIANLAPAGAAARCGQLNIGD 59
          EI  + + +  ILG  I     +    +          + +  ++  G A   G L IGD
Sbjct: 28 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 86

Query: 60 QIIAVNGVSLVGL 72
          +I+ VNG  +  +
Sbjct: 87 KIMQVNGWDMTMV 99

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 8  TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
           S  + V  A     G  I   G     P +++  +   G A     L  GD I+A+NG 
Sbjct: 4  GSSGLTVDVAGPAPWGFRIS-GGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAINGQ 60

Query: 68 SLVGLPLSTCQTYIK 82
          S   +  +  Q+ I+
Sbjct: 61 SAENMLHAEAQSKIR 75

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + I++L   G A++   + IGD +++++G+S  G+     Q  IK
Sbjct: 31 LTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIK 74

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 40.3 bits (95), Expect = 3e-06
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          P   I ++ P   AAR G L   D++I VNG ++ GL 
Sbjct: 28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          +VI  + P   AA    L  GD I+A++G     +  +  Q  IK
Sbjct: 31 LVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIK 74

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 39.7 bits (93), Expect = 5e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + I+ + P   AA    L IGD I A++G +   +     Q  IK
Sbjct: 29 LAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIK 72

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 40.2 bits (94), Expect = 6e-06
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
           +V +P  KG    G  I +S  G  +  ++         +  C  L  GD I  +   +
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVKMIL--------DSQWCQGLQKGDIIKEIYHQN 63

Query: 69 LVGLP 73
          +  L 
Sbjct: 64 VQNLT 68

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 39.6 bits (93), Expect = 7e-06
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
              I  + P   A + G L  GD+++ VNG ++    
Sbjct: 27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 39.6 bits (93), Expect = 7e-06
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          P   I  +   G A   G L   D II VNGV+++  P
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 39.5 bits (93), Expect = 8e-06
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + I+ +     AA    L  GD I A+NG S   +     Q  IK
Sbjct: 34 LTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK 77

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 39.3 bits (92), Expect = 8e-06
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 4  LNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 63
          +  VT+ ++  P  + + LG  +            +I +L   G A R G + +G +II 
Sbjct: 9  MGNVTTVLIRRPDLRYQ-LGFSVQNG---------IICSLMRGGIAERGG-VRVGHRIIE 57

Query: 64 VNGVSLVGLP 73
          +NG S+V  P
Sbjct: 58 INGQSVVATP 67

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 39.2 bits (92), Expect = 8e-06
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          +++  +A  G A     L  GD I+A+NG S  G+  +  Q+ I+
Sbjct: 28 IMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIR 71

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 39.7 bits (93), Expect = 9e-06
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          V + ++ P G A R G +   D +I VNG ++   
Sbjct: 34 VYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDA 67

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
            + K +G+  G  +            +I  +     A + G L  GD+++ +NGV +  
Sbjct: 17 CKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 72

Query: 72 LP 73
            
Sbjct: 73 EE 74

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          P   I ++ P   A   G L   D+I+ VNGV + G 
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGK 68

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
           +I ++ P   A   G L   D ++AVNG S+  L 
Sbjct: 31 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 39.0 bits (91), Expect = 1e-05
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
             + K +G+  G  +            +I  +     A + G L  GD+++ +NGV + 
Sbjct: 4  ESKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVD 59

Query: 71 GLP 73
             
Sbjct: 60 KEE 62

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 4  LNPVTSEIVVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
          + P  ++ + + K+          + S     +  + + ++   G A++ G L  GD+I+
Sbjct: 11 ICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEIL 69

Query: 63 AVNGVSLVGLPLS 75
           +N  +   L  S
Sbjct: 70 EINNRAADALNSS 82

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 24 VVIV--ESGWGSML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
            +    SG+G  L      P   I ++ P   A   G L   D+I+ VNGV + G  
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 6  PVTSEIVVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAG-AAARCGQLNIGDQIIA 63
          P +  ++ +P       G  V VES   +   TV +  +     +      ++ GD+I+ 
Sbjct: 13 PYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILE 72

Query: 64 VNGVSLVGLPLSTCQTYIK 82
          +NG  +  L +   +  IK
Sbjct: 73 INGTPVRTLRVEEVEDAIK 91

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 11 IVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          ++ + K   +  G  I   G        +     +A +  +  A   G L  GD I +VN
Sbjct: 7  VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN 65

Query: 66 GVSLVGLP 73
          G+++ G+ 
Sbjct: 66 GLNVEGIR 73

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
          V +  L P  +A+  G    GD I+++  V    L
Sbjct: 46 VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWL 79

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          + T+ +  +   G A   G L  GD+II VNG S++G  
Sbjct: 60 MDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKT 97

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 37.6 bits (88), Expect = 3e-05
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
           V++ +     A   G L  GDQI+AVN +++    
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS 59

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 27 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + S     +  + + ++   G A++ G L  GD+I+ +N  +   L  S  + ++ 
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS 80

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 11 IVVVPKAKGEILGVVIV-----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          +V V K   E  G  I           S     +I  +     A   G L  GD +  +N
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76

Query: 66 GVSLVGLP 73
          GVS  G  
Sbjct: 77 GVSTEGFT 84

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 37.3 bits (87), Expect = 5e-05
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          V +  +   G A R G L   D ++ +N   +    
Sbjct: 26 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 60

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 37.7 bits (88), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
           +I ++ P   A   G L   D ++AVNG S+  L 
Sbjct: 32 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 37.4 bits (87), Expect = 5e-05
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          V +  +   G A R G L   D ++ +N   +    
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK 72

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + +  +   G+A   G+L  GDQI+ +N      L        ++
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILR 75

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 6  PVTSEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
             +E++ +   KG    G  I +S  G  +  ++            C  L  GD I+ +
Sbjct: 6  SGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQIL--------DIQGCPGLCEGDLIVEI 57

Query: 65 NGVSLVGLP 73
          N  ++  L 
Sbjct: 58 NQQNVQNLS 66

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 11 IVVVPKAKG---EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          IV+    K     +  + +            V+ ++     A   G L  GD I  +NG 
Sbjct: 6  IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64

Query: 68 SLVGLP 73
          S++GL 
Sbjct: 65 SVLGLV 70

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          V +  L P  +A+  G    GD I+++ GV    L 
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLT 72

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 36  PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
               + ++   G A R G L +GD +I VNG ++V + 
Sbjct: 65  ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVG 101

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 49 AARCGQLNIGDQIIAVNGVSLVGLP 73
          + R   L  GD I+ VN  ++  L 
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALT 61

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          V++ ++ P GAA + G +  GD+II VNG  +    
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSS 65

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          P   I ++ P   A   G L   D+I+ VNGV + G  
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
              + ++   G A R G L +GD +I VNG ++V +
Sbjct: 45 ALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKV 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.83
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.77
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.77
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.77
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.76
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.73
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.71
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.7
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.7
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.7
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.7
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.69
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.68
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.68
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.67
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.67
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.67
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.66
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.66
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.65
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.65
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.65
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.65
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.65
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.65
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.65
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.65
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.65
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.65
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.65
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.65
2ego_A	96	General receptor for phosphoinositides 1- associat	99.65
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.65
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.65
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.64
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.64
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.64
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.64
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.64
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.64
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.64
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.64
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.64
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.64
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.63
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.63
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.63
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.63
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.63
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.63
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.63
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.63
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.63
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.63
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.62
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.62
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.62
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.62
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.62
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.61
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.61
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.61
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.61
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.6
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.6
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.6
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.6
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.6
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.6
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.6
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.6
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.6
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.6
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.6
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.59
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.59
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.59
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.59
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.59
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.59
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.59
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.58
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.58
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.58
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.58
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.58
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.58
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.58
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.57
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.57
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.57
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.57
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.56
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.56
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.56
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.56
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.56
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.56
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.55
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.55
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.55
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.55
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.55
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.54
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.54
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.54
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.54
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.54
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.53
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.53
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.53
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.52
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.52
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.52
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.51
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.51
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.5
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.5
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.5
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.5
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.5
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.49
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.49
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.49
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.48
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.48
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.22
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.48
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.47
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.47
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.47
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.46
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.46
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.45
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.45
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.45
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.44
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.44
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.44
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.43
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.43
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.42
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.42
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.41
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.41
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.4
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.39
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.39
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.38
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.37
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.37
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.36
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.36
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.35
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.35
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.35
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.34
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.34
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.33
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.33
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.32
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.3
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.3
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.25
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.24
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.23
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.18
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.17
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.82
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.77
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.72
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.71
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.63
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.63
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.58
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.56
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.56
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.54
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.54
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.51
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.51
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.39
3k50_A	403	Putative S41 protease; structural genomics, joint	98.36
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.34
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.31
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.29
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.29
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.28
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.27
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.24
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.23
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.2
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.17
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.15
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.99
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.72
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.7
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.52
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.38
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.19

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.6e-19  Score=101.40  Aligned_cols=73  Identities=23%  Similarity=0.346  Sum_probs=63.6

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+.|.. ++|||+|.+++.    ..+||+++.++++|+++++|++||.|++|||+++.+++|.+++++||+.+
T Consensus         5 ~~k~V~l~K~~-~~LG~tI~~~g~----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~   77 (95)
T 3gge_A            5 IEKEVNVYKSE-DSLGLTITDNGV----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK   77 (95)
T ss_dssp             EEEEEEEECCS-SCCCEEEECSSS----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEECC-CCceEEEEcCCC----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCC
Confidence            34788888754 799999974332    23799999999999999999999999999999999999999999999865

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.77  E-value=5.4e-18  Score=98.55  Aligned_cols=84  Identities=23%  Similarity=0.413  Sum_probs=70.9

Q ss_pred             CcCCCcccEEEEEECCCCCcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490           2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus         2 ~~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      +|+.+...+.+.+.+..+.+|||++.++... ....+++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+
T Consensus        18 ~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~   97 (118)
T 3b76_A           18 LYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVAL   97 (118)
T ss_dssp             CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHH
T ss_pred             cccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3566777788888877677999999843221 234479999999999999999999999999999999999999999999


Q ss_pred             HHhCC
Q psy3490          81 IKVNH   85 (88)
Q Consensus        81 lk~~~   85 (88)
                      ++.+.
T Consensus        98 l~~~~  102 (118)
T 3b76_A           98 LKRTS  102 (118)
T ss_dssp             HHSCC
T ss_pred             HHcCC
Confidence            99764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.77  E-value=7.2e-18  Score=96.67  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=67.3

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +..+..++.+++.+  +.+|||++.++......++++|..+.+++||+++|+|++||+|++|||+++.+++|++++++||
T Consensus        10 ~~~~~~~~~v~l~k--~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~   87 (109)
T 1wi4_A           10 LDRDPAFRVITVTK--ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT   87 (109)
T ss_dssp             CCCCTTEEEEEECC--SSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHH
T ss_pred             CCCCCcEEEEEEeC--CCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34566667777765  4799999984332223346999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ++.
T Consensus        88 ~~~   90 (109)
T 1wi4_A           88 RAK   90 (109)
T ss_dssp             HSC
T ss_pred             ccc
Confidence            875

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.77  E-value=1e-17  Score=91.93  Aligned_cols=67  Identities=22%  Similarity=0.363  Sum_probs=59.9

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+++.+.+.++|||++. ++        +|.++.+++||+++| |++||+|++|||+++.+++|++++++||++.
T Consensus         5 ~r~v~l~k~~~g~~Gf~i~-~g--------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g   71 (82)
T 1r6j_A            5 PRTITMHKDSTGHVGFIFK-NG--------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG   71 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE-TT--------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCCeEEEEE-CC--------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            4778899887779999996 22        478999999999999 9999999999999999999999999999765

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.76  E-value=2.7e-17  Score=92.93  Aligned_cols=82  Identities=51%  Similarity=0.830  Sum_probs=70.9

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +++++.++.+.+.+..+.+|||++.+.+.....++++|..+.+++||++++.|++||.|++|||+++.+.+++++..+|+
T Consensus         4 ~~~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~   83 (101)
T 2yt7_A            4 GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR   83 (101)
T ss_dssp             CSTTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             CCCCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            46788889999998888899999975443334456999999999999997779999999999999999999999999998


Q ss_pred             hC
Q psy3490          83 VN   84 (88)
Q Consensus        83 ~~   84 (88)
                      ..
T Consensus        84 ~~   85 (101)
T 2yt7_A           84 ET   85 (101)
T ss_dssp             HT
T ss_pred             hC
Confidence            73

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.73  E-value=8.1e-17  Score=93.29  Aligned_cols=82  Identities=24%  Similarity=0.351  Sum_probs=67.7

Q ss_pred             CcCCCcccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHH
Q psy3490           2 LHLNPVTSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC   77 (88)
Q Consensus         2 ~~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~   77 (88)
                      .|+.++..+.+.+.+.. .+|||++.+ +.+.    ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++
T Consensus        18 ~y~~~~~~~~v~l~k~~-~glG~~i~g-g~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~   95 (117)
T 2byg_A           18 LYFQSMTVVEIKLFKGP-KGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA   95 (117)
T ss_dssp             --CEEEEEEEEEEECBT-TBSSEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             cccCCCceEEEEEEeCC-CCcCEEEEc-ccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            35677777888887654 799999984 3322    23479999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC
Q psy3490          78 QTYIKVNH   85 (88)
Q Consensus        78 ~~~lk~~~   85 (88)
                      +.+++.++
T Consensus        96 ~~~l~~~g  103 (117)
T 2byg_A           96 VAILKNTS  103 (117)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHcCC
Confidence            99998654

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.71  E-value=6.5e-17  Score=92.45  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+....+|||++.++.......+++|..|.++|||+++|+|++||+|++|||+++.+++|++++.+++.+
T Consensus         7 ~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   81 (108)
T 3cbz_A            7 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI   81 (108)
T ss_dssp             EEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            456666555569999998543222356799999999999999999999999999999999999999999999865

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=2.1e-16  Score=87.36  Aligned_cols=73  Identities=25%  Similarity=0.444  Sum_probs=62.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+.+.|..+.+|||++.+.+    ..+++|.++.++|||++++.|++||.|++|||+++.+++++++.++++++.
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   74 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNE----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR   74 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred             eEEEEEEeCCCCceeEEEEeCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            3678888887789999997321    235899999999999995569999999999999999999999999998764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.70  E-value=5.3e-16  Score=86.26  Aligned_cols=75  Identities=23%  Similarity=0.379  Sum_probs=63.9

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +..+.+++.+. +.+|||++..+   ....+++|.++.+++||+++|+|++||+|++|||.++.+.++++++.+++.+.
T Consensus         3 ~~~r~v~l~k~-~~~lG~~i~~~---~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (93)
T 3o46_A            3 DSVKIIRLVKN-REPLGATIKKD---EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ   77 (93)
T ss_dssp             -CCEEEEEEES-SSCCCEEEEEC---TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             ccEEEEEEEeC-CCCccEEEEec---CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45577888875 46999999732   23346999999999999999999999999999999999999999999998764

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.70  E-value=1.3e-16  Score=92.81  Aligned_cols=80  Identities=28%  Similarity=0.424  Sum_probs=61.5

Q ss_pred             CCcccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           5 NPVTSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         5 ~~~~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+...+.+++.+..+.+|||++.+ +.+.  ...+++|..+.++|||+++|.|++||+|++|||.++.++++.+++.+++
T Consensus        21 ~~~~~~~v~l~k~~~~~lGf~i~g-g~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~   99 (120)
T 2iwo_A           21 QSMGLRTVEMKKGPTDSLGISIAG-GVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK   99 (120)
T ss_dssp             ----CEEEEEEC----CCCEEEEE-EEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CCCCcEEEEEEcCCCCCCCEEEec-ccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            344557788888776799999974 3221  2336999999999999999569999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      .+.
T Consensus       100 ~~~  102 (120)
T 2iwo_A          100 NAS  102 (120)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            765

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=1.5e-16  Score=90.39  Aligned_cols=74  Identities=31%  Similarity=0.496  Sum_probs=61.6

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+ ...+|||++. ++.+...+.++|..+.+++||+++|+|++||+|++|||+++.+++|++++++|+.+
T Consensus         7 ~~~v~l~k-~~~glG~~i~-gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   80 (103)
T 1ufx_A            7 GTLVRVKK-SAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             SEEEEEEC-CSSSCCEEEE-CBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             eEEEEEEc-CCCcCCeEEE-CCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            35566653 4469999998 44434444459999999999999999999999999999999999999999999874

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.69  E-value=4e-16  Score=90.30  Aligned_cols=77  Identities=19%  Similarity=0.380  Sum_probs=64.4

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+.+.+....+|||++. ++.+....+++|..|.+++||+++|+|++||.|++|||.++.++++.+++.+++...
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~-g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   91 (119)
T 1x6d_A           15 GIHVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   91 (119)
T ss_dssp             TEEEEEEECCTTSCCSEEEE-CCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CeEEEEEEeCCCCccCEEEe-CCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            33556666666679999997 344333457999999999999999999999999999999999999999999998654

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-16  Score=88.69  Aligned_cols=77  Identities=31%  Similarity=0.447  Sum_probs=63.7

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...+.+++.+..+.+|||++.+ +.+ ...+++|..+.++|||++++.|++||.|++|||.++.++++.+++.+++.+.
T Consensus         8 ~~~~~v~l~~~~~~~lG~~l~~-g~~-~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~   84 (103)
T 2dc2_A            8 GPIRKVLLLKEDHEGLGISITG-GKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR   84 (103)
T ss_dssp             -CEEEEEEECCSSSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             CCcEEEEEEeCCCCccCEEEEe-ccC-CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3446788888777899999973 322 2236899999999999997449999999999999999999999999998765

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.68  E-value=1.2e-15  Score=88.99  Aligned_cols=74  Identities=26%  Similarity=0.322  Sum_probs=63.8

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+....+|||++.+ +.. ..++++|..+.++|||+++|+|++||+|++|||.++.+++|+++..++++++
T Consensus        21 ~~v~l~k~~~~~lG~~i~g-g~~-~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   94 (125)
T 3hpk_A           21 GKVTLQKDAQNLIGISIGG-GAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   94 (125)
T ss_dssp             EEEEEECCTTSCCCEEEEE-CSS-CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             eEEEEEeCCCCCcCEEEec-cCC-CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5677787777799999974 322 3356999999999999999999999999999999999999999999998764

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.67  E-value=2.7e-16  Score=92.53  Aligned_cols=76  Identities=24%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+++.+. ..+|||+|. ++.+.  ...+++|..|.+++||+++|.|++||+|++|||.++.+++|++++.+|+.+.
T Consensus        29 ~~~~v~l~k~-~~glG~~i~-gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  106 (130)
T 1i16_A           29 TVCTVTLEKM-SAGLGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             EEEEEEEETT-SSSTTEEEE-CCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             cEEEEEEEcC-CCccCEEEe-cCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3355666643 459999998 34332  2346999999999999999669999999999999999999999999999864

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=1.2e-15  Score=88.30  Aligned_cols=75  Identities=23%  Similarity=0.394  Sum_probs=63.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+..+.+|||.+..+. .....+++|..|.+++||+++|+|++||.|++|||+++.++++++++.+|+..
T Consensus        16 ~~~v~l~k~~~~~lG~~i~~~~-~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   90 (117)
T 1v62_A           16 PLMVEIVKTPGSALGISLTTTS-LRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI   90 (117)
T ss_dssp             SEEEEEECCTTCCCCCEEEEEC-CSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC
T ss_pred             cEEEEEEcCCCCcccEEEEccC-CCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3667888877779999997432 22234599999999999999999999999999999999999999999999854

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.67  E-value=2.6e-15  Score=84.49  Aligned_cols=77  Identities=29%  Similarity=0.358  Sum_probs=63.7

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCC----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSM----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ...+.+++.+.. .+|||++.+ +.+.+    ..+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++
T Consensus         6 ~~~~~v~l~~~~-~~lG~~l~~-g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (101)
T 2jik_A            6 VTEEEINLTRGP-SGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   83 (101)
T ss_dssp             EEEEEEEEECCT-TCCCEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CccEEEEEEeCC-CCCCEEEec-cccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            344677777644 699999984 33322    357999999999999999999999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ...
T Consensus        84 ~~g   86 (101)
T 2jik_A           84 NAG   86 (101)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            653

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.66  E-value=2.5e-15  Score=85.23  Aligned_cols=77  Identities=29%  Similarity=0.365  Sum_probs=62.6

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +....+++.+.. .+|||++.+ +.+.    ...+++|..+.++|||+++|+|++||.|++|||.++.+.++.+++..++
T Consensus         2 e~~~~v~l~k~~-~glG~~i~g-g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (105)
T 2awx_A            2 EKIMEIKLIKGP-KGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK   79 (105)
T ss_dssp             -CEEEEEEECBT-TBSSEEEEE-CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CeEEEEEEEECC-CCCCEEEeC-ccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            344566677544 599999984 3322    2347999999999999999999999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      .+.
T Consensus        80 ~~~   82 (105)
T 2awx_A           80 NTS   82 (105)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.66  E-value=1.5e-15  Score=93.20  Aligned_cols=73  Identities=29%  Similarity=0.478  Sum_probs=59.9

Q ss_pred             EEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +++.+.. .+|||+|.+++.+.    ...+++|..|.+++||+++|+|++||+|++|||.++.+++|.+++.+|+.++
T Consensus        84 v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g  160 (170)
T 3egg_C           84 VELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK  160 (170)
T ss_dssp             EEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCC
T ss_pred             EEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4444332 49999998522221    2347999999999999999999999999999999999999999999999764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.65  E-value=1.2e-15  Score=83.74  Aligned_cols=74  Identities=32%  Similarity=0.487  Sum_probs=62.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+..+.+|||++.+ +.. ...+++|..+.++|||++++.|++||+|++|||.++.++++.+++.+++.+.
T Consensus         4 ~~v~l~~~~~~~lG~~i~~-~~~-~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   77 (87)
T 4e34_A            4 RKVLLLKEDHEGLGISITG-GKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR   77 (87)
T ss_dssp             EEEEEECCTTBCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             EEEEEEECCCCcccEEEEc-cCC-CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5678888777799999973 322 2245899999999999995349999999999999999999999999998764

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.65  E-value=1.9e-15  Score=85.12  Aligned_cols=72  Identities=21%  Similarity=0.400  Sum_probs=63.2

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+..+++|||++....    ..+++|.++.++|||+++|+|++||.|++|||.++.+++++++.++++.+
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~----~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~   84 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNE----KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET   84 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECT----TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred             cEEEEEEeCCCCCeeEEEEeCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3678899888889999996211    23699999999999999999999999999999999999999999999865

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.65  E-value=1e-15  Score=89.81  Aligned_cols=82  Identities=27%  Similarity=0.418  Sum_probs=67.2

Q ss_pred             CCCcccEEEEEECCC-CCcccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHH
Q psy3490           4 LNPVTSEIVVVPKAK-GEILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLS   75 (88)
Q Consensus         4 ~~~~~~~~~~i~~~~-~~~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~   75 (88)
                      ..+...+.+.+.+.. +.+|||++.++...       ...++++|..+.++|||+++|.|++||.|++|||.++.+.++.
T Consensus        25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~  104 (128)
T 1nf3_C           25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD  104 (128)
T ss_dssp             TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHH
T ss_pred             cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            456777888888765 46999999743210       0123699999999999999998999999999999999999999


Q ss_pred             HHHHHHHhCC
Q psy3490          76 TCQTYIKVNH   85 (88)
Q Consensus        76 ~~~~~lk~~~   85 (88)
                      +++.+++.+.
T Consensus       105 ~~~~~l~~~~  114 (128)
T 1nf3_C          105 QVTDMMIANS  114 (128)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHcCC
Confidence            9999998654

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.65  E-value=2.7e-15  Score=85.17  Aligned_cols=78  Identities=29%  Similarity=0.419  Sum_probs=62.2

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+++.++...+|||++.++.. .....+++|..+.++|||+++|+|++||.|++|||.++.++++.+++.+++.+.
T Consensus         9 ~~~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   87 (106)
T 3axa_A            9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   87 (106)
T ss_dssp             -CCEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CceEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            334455555445699999974322 223447999999999999999999999999999999999999999999998654

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.65  E-value=4.5e-15  Score=82.19  Aligned_cols=73  Identities=26%  Similarity=0.333  Sum_probs=62.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+..+.+|||++.+ +.  ...+++|..+.++|||+++|+|++||.|++|||.++.+.++.++..+++.+.
T Consensus         6 ~~v~l~k~~~~~lG~~~~~-~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   78 (92)
T 2qg1_A            6 LTIGLQKKPGKGLGLSIVG-KR--NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL   78 (92)
T ss_dssp             EEEEEECCTTSCCSEEEEC-CS--SSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             EEEEEEeCCCCcccEEEEe-cc--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            5577887767799999973 22  2346999999999999999999999999999999999999999999988653

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=1.8e-15  Score=87.46  Aligned_cols=78  Identities=26%  Similarity=0.324  Sum_probs=63.4

Q ss_pred             ccEEEEEECCC------CCcccEEEEeCCCC---CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490           8 TSEIVVVPKAK------GEILGVVIVESGWG---SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ   78 (88)
Q Consensus         8 ~~~~~~i~~~~------~~~lG~~i~~~~~~---~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~   78 (88)
                      ..+.+.+.+..      +.+|||++.++...   ....+++|..+.+++||+++|+|++||+|++|||.++.+++|.+++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~   91 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            34667777665      46999999743221   1233699999999999999999999999999999999999999999


Q ss_pred             HHHHhCC
Q psy3490          79 TYIKVNH   85 (88)
Q Consensus        79 ~~lk~~~   85 (88)
                      .+++.+.
T Consensus        92 ~~l~~~~   98 (117)
T 1ujd_A           92 SIISQQS   98 (117)
T ss_dssp             HHHSCCS
T ss_pred             HHHhcCC
Confidence            9998753

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.65  E-value=4.6e-15  Score=84.78  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=67.4

Q ss_pred             cCCCcccEEEEEECCCCC-cccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGE-ILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~-~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      |++++..+.+.+...++. +|||++.+.... ....+++|..+.++|||+++|+|++||.|++|||.++.+.++.++..+
T Consensus         4 y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (111)
T 2koj_A            4 YNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSL   83 (111)
T ss_dssp             CCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred             ccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            677888887777665544 999999743221 112469999999999999998899999999999999999999999999


Q ss_pred             HHhC
Q psy3490          81 IKVN   84 (88)
Q Consensus        81 lk~~   84 (88)
                      ++..
T Consensus        84 l~~~   87 (111)
T 2koj_A           84 LRST   87 (111)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9874

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.65  E-value=3e-15  Score=85.38  Aligned_cols=75  Identities=28%  Similarity=0.337  Sum_probs=62.3

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+. ..+|||++.++...  ....+++|..+.+++||+++|+|++||+|++|||.++.++++++++.+++.+
T Consensus        16 ~~~v~l~k~-~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2d92_A           16 VKIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV   92 (108)
T ss_dssp             CEEEEEEEC-SSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred             eEEEEEEEC-CCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            366777765 36999999743221  1234699999999999999999999999999999999999999999999875

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.65  E-value=2.6e-15  Score=86.61  Aligned_cols=77  Identities=27%  Similarity=0.353  Sum_probs=64.5

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC--------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS--------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT   79 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~--------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~   79 (88)
                      ..+.+.+.+..+.+|||++. ++.+.        ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~-gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   93 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIV-GGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVE   93 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEEC-CCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred             CCEEEEEEeCCCCccCEEEe-CCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            34677788776679999997 33322        2357999999999999999989999999999999999999999999


Q ss_pred             HHHhCC
Q psy3490          80 YIKVNH   85 (88)
Q Consensus        80 ~lk~~~   85 (88)
                      +++.+.
T Consensus        94 ~~~~~g   99 (117)
T 2ehr_A           94 AIKNAG   99 (117)
T ss_dssp             HHHTSC
T ss_pred             HHHcCC
Confidence            998753

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.65  E-value=2.3e-15  Score=85.67  Aligned_cols=71  Identities=28%  Similarity=0.414  Sum_probs=57.7

Q ss_pred             EECCCCCcccEEEEeCCCCCC----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          14 VPKAKGEILGVVIVESGWGSM----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +...+..+|||++.+ +.+..    ..+++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+++.++
T Consensus         7 ~~~~~~~~~Gf~i~g-G~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   81 (106)
T 4amh_A            7 LVPRGSKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTS   81 (106)
T ss_dssp             -----CCCSCEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCC
T ss_pred             cCCCCCCccCEEEEe-ccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            334455699999984 44332    337999999999999999999999999999999999999999999998764

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.65  E-value=5e-15  Score=85.39  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ++.+...+.+++.+....+|||++.++.  ...++++|..+.++|||+++|+|++||.|++|||.++.+.+++++..+++
T Consensus        19 ~~q~~~~~~V~l~~~~~~~lG~~l~~~~--~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~   96 (114)
T 2gzv_A           19 YFQSMVPGKVTLQKDAQNLIGISIGGGA--QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ   96 (114)
T ss_dssp             ---CCCCEEEEEECCTTSCCSEEEEECC--C--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eeccCCCEEEEEEECCCCcEeEEEEeCC--CCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3445556888888877778999997332  22346999999999999999999999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ...
T Consensus        97 ~~~   99 (114)
T 2gzv_A           97 EVK   99 (114)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=4.9e-16  Score=88.98  Aligned_cols=80  Identities=29%  Similarity=0.431  Sum_probs=66.2

Q ss_pred             CcccEEEEEECCCCCcccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490           6 PVTSEIVVVPKAKGEILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ   78 (88)
Q Consensus         6 ~~~~~~~~i~~~~~~~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~   78 (88)
                      |...+.+.+.+..+.+|||++.++...       ....+++|..+.+++||+++|+|++||.|++|||+++.++++.+++
T Consensus         7 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   86 (111)
T 1uju_A            7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            344577888887778999999843211       2234699999999999999999999999999999999999999999


Q ss_pred             HHHHhCC
Q psy3490          79 TYIKVNH   85 (88)
Q Consensus        79 ~~lk~~~   85 (88)
                      .+++...
T Consensus        87 ~~l~~~g   93 (111)
T 1uju_A           87 QLLRSVG   93 (111)
T ss_dssp             HHHSSCS
T ss_pred             HHHHcCC
Confidence            9998653

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.65  E-value=4.5e-15  Score=82.97  Aligned_cols=76  Identities=22%  Similarity=0.338  Sum_probs=62.7

Q ss_pred             cEEEEEECCCCCcccEEEEeCC-----CCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           9 SEIVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~-----~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+.+++.+..+.+|||++.+.+     ......+++|..+.++|||+++| |++||.|++|||.++.+++++++..+++.
T Consensus         5 ~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~   83 (96)
T 2ego_A            5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKA   83 (96)
T ss_dssp             EEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3678888877779999997411     11123468999999999999999 99999999999999999999999999987


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ..
T Consensus        84 ~~   85 (96)
T 2ego_A           84 SG   85 (96)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.65  E-value=5e-15  Score=81.87  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=61.0

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+++.+.. .+|||++.++.   ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++.+.
T Consensus         4 ~r~v~l~r~~-~g~G~~~~~~~---~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   75 (91)
T 1g9o_A            4 PRLCCLEKGP-NGYGFHLHGEK---GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL   75 (91)
T ss_dssp             CEEEEEECBT-TBCCEEEEECT---TCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             cEEEEEEeCC-CcccEEEEecC---CCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4678888754 48999997322   12469999999999999999 9999999999999999999999999998753

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.65  E-value=4.9e-15  Score=84.28  Aligned_cols=81  Identities=21%  Similarity=0.245  Sum_probs=64.6

Q ss_pred             cCCCcccEEEEEEC---CCCCcccEEEEeCCCCC---CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHH
Q psy3490           3 HLNPVTSEIVVVPK---AKGEILGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST   76 (88)
Q Consensus         3 ~~~~~~~~~~~i~~---~~~~~lG~~i~~~~~~~---~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~   76 (88)
                      |+++++++.+.+..   ....+|||++.++....   ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+
T Consensus         5 ~~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~   84 (108)
T 2jre_A            5 YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSD   84 (108)
T ss_dssp             CCSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHH
T ss_pred             cccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            56677776666555   33449999997322211   2347999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy3490          77 CQTYIKV   83 (88)
Q Consensus        77 ~~~~lk~   83 (88)
                      +..+++.
T Consensus        85 ~~~~l~~   91 (108)
T 2jre_A           85 VVEVLRN   91 (108)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999875

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.64  E-value=1.9e-15  Score=83.50  Aligned_cols=75  Identities=27%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+++.+..+.+|||++.+ +.. ...+++|..+.++|||++++.|++||.|++|||.++.++++.+++.+++.+.
T Consensus         5 ~~~v~l~k~~~~~lG~~i~~-~~~-~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            5 RRRVTVRKADAGGLGISIKG-GRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             CEEEEEECCTTTCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             cEEEEEEeCCCCCcCEEEEc-ccC-CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            36788888777899999973 222 2346999999999999999459999999999999999999999999998753

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.64  E-value=3.1e-15  Score=88.27  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=63.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC----------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS----------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT   79 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~----------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~   79 (88)
                      +.+++.+....+|||+|.++....          ...+++|..|.++|||+++| |++||+|++|||.++.++++.+++.
T Consensus        29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~  107 (132)
T 3l4f_D           29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVN  107 (132)
T ss_dssp             CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHH
T ss_pred             EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            678888776679999998543211          11269999999999999999 9999999999999999999999999


Q ss_pred             HHHhCC
Q psy3490          80 YIKVNH   85 (88)
Q Consensus        80 ~lk~~~   85 (88)
                      +++.+.
T Consensus       108 ~l~~~g  113 (132)
T 3l4f_D          108 MIRQGG  113 (132)
T ss_dssp             HHHHTT
T ss_pred             HHHcCC
Confidence            998754

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=2.9e-15  Score=84.96  Aligned_cols=72  Identities=26%  Similarity=0.436  Sum_probs=58.8

Q ss_pred             EEEECCCC-CcccEEEEeCCCC-----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKG-EILGVVIVESGWG-----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~-~~lG~~i~~~~~~-----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++...++ .+|||++.+ +.+     ....+++|..|.+++||+++|.|++||.|++|||.++.++++.+++.+++..
T Consensus         9 ~~v~l~~~~~glG~~l~~-g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   86 (105)
T 1wha_A            9 HVACLARSERGLGFSIAG-GKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEECCCTTCCSCEEEC-CTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             EEEEEEeCCCccCEEEEe-ccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            33433333 489999983 332     1245799999999999999999999999999999999999999999999865

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.64  E-value=5.4e-15  Score=81.56  Aligned_cols=72  Identities=22%  Similarity=0.388  Sum_probs=59.8

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+++.+.. .+|||++.+ +.... .+++|..+.++|||+++|+|++||.|++|||.++.+.++.++..+++.+
T Consensus         4 ~~v~l~~~~-~g~G~~~~~-g~~~~-~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   75 (90)
T 2q9v_A            4 QDIFLWRKE-TGFGFRILG-GNEPG-EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA   75 (90)
T ss_dssp             EEEEEECBT-TBCCEEEEE-CSSTT-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEEECC-CccCEEEEc-cccCC-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            556677543 589999973 33222 3499999999999999999999999999999999999999999998754

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=1.6e-15  Score=87.87  Aligned_cols=76  Identities=32%  Similarity=0.444  Sum_probs=62.4

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+++.+.. .+|||++.++ .+.  ...+++|..|.++|||+++|+|++||.|++|||.++.++++.+++.+++.+.
T Consensus        25 ~~~~v~L~k~~-~glGf~l~~g-~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  102 (117)
T 2fne_A           25 QCKSITLERGP-DGLGFSIVGG-YGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK  102 (117)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEE-EEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ccEEEEEEeCC-CcccEEEecc-cCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34667777643 6999999743 221  1346999999999999999999999999999999999999999999998654

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.64  E-value=4.9e-15  Score=85.05  Aligned_cols=80  Identities=23%  Similarity=0.330  Sum_probs=63.4

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ++.+...+.+.+.+.. .+|||++.+ +. ....+++|..|.++|||+++|+|++||.|++|||.++.+.++.++...++
T Consensus        19 ~~~~~~~~~v~l~~~~-~glG~~l~~-~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   95 (112)
T 2r4h_A           19 YFQSMDFYTVELERGA-KGFGFSLRG-GR-EYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK   95 (112)
T ss_dssp             ----CCEEEEEEECBT-TBTSEEEEE-CG-GGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ccCCCceEEEEEEcCC-CccCEEEec-cc-cCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            4566777778887643 589999973 32 22346999999999999999989999999999999999999999999988


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ..+
T Consensus        96 ~~g   98 (112)
T 2r4h_A           96 NGG   98 (112)
T ss_dssp             TTT
T ss_pred             cCC
Confidence            643

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=2.1e-15  Score=88.32  Aligned_cols=78  Identities=18%  Similarity=0.226  Sum_probs=64.3

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECC-CCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-GLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~-~~~~~~~~~~lk~~~   85 (88)
                      ..+.+.+.+....+|||++.++... ....+++|..|.+++||+++|+|++||.|++|||.++. ++++.+++.+++...
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~  104 (128)
T 2db5_A           25 QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT  104 (128)
T ss_dssp             EEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence            3466778876667999999743221 12337999999999999999999999999999999997 999999999998754

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.64  E-value=4e-15  Score=83.25  Aligned_cols=78  Identities=23%  Similarity=0.402  Sum_probs=64.0

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..+.+++.+....+|||++.++....    ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++.
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            34678888767779999997432211    12369999999999999999899999999999999999999999999986


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ..
T Consensus        85 ~g   86 (98)
T 1ihj_A           85 AD   86 (98)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.64  E-value=4.4e-15  Score=86.52  Aligned_cols=74  Identities=23%  Similarity=0.396  Sum_probs=62.0

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+. ..+|||++. ++......+++|..|.++|||+++|+|++||.|++|||+++.++++.+++.+++.+.
T Consensus        27 ~~v~l~k~-~~glG~~l~-~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           27 HIIELEKD-KNGLGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             EEEEEECC-SSCCCEEEE-CBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             EEEEEEeC-CCccCEEEe-ccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45666654 459999997 343344457999999999999999999999999999999999999999999998754

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.64  E-value=1.4e-14  Score=80.39  Aligned_cols=76  Identities=29%  Similarity=0.368  Sum_probs=62.5

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +.+.+++.+. ..+|||++.+ +.+.    ...+++|..+.++|||+++|.|++||.|++|||.++.++++.++..+++.
T Consensus         3 ~~~~v~l~k~-~~g~G~~i~g-g~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (94)
T 2fe5_A            3 TIMEVNLLKG-PKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   80 (94)
T ss_dssp             CEEEEEEECC-TTCSCEEEEE-CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             EEEEEEEEEC-CCCCCEEEEc-ccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3466777764 4599999984 3222    23479999999999999999999999999999999999999999999986


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ..
T Consensus        81 ~~   82 (94)
T 2fe5_A           81 TS   82 (94)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.63  E-value=7e-16  Score=90.45  Aligned_cols=82  Identities=27%  Similarity=0.339  Sum_probs=63.9

Q ss_pred             cCCCcccE--EEEEECC--CCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHH
Q psy3490           3 HLNPVTSE--IVVVPKA--KGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST   76 (88)
Q Consensus         3 ~~~~~~~~--~~~i~~~--~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~   76 (88)
                      ++.|...+  .+++...  ...+|||++.++...  ....+++|..|.+++||+++|+|++||+|++|||.++.+++|.+
T Consensus        16 ~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~   95 (127)
T 1wg6_A           16 ALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHE   95 (127)
T ss_dssp             CSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHH
T ss_pred             ccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            55665544  4556543  344999999733211  01236999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC
Q psy3490          77 CQTYIKVN   84 (88)
Q Consensus        77 ~~~~lk~~   84 (88)
                      ++.+|+.+
T Consensus        96 ~~~~l~~~  103 (127)
T 1wg6_A           96 AMETLRRS  103 (127)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.63  E-value=8.5e-15  Score=81.92  Aligned_cols=74  Identities=28%  Similarity=0.439  Sum_probs=60.6

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+. ..+|||++.+ +.+....+++|..+.++|||+++|+|++||.|++|||.++.++++.++...++...
T Consensus         6 ~~v~l~~~-~~~lG~~l~~-~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (98)
T 2opg_A            6 TTIEISKG-RTGLGLSIVG-GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP   79 (98)
T ss_dssp             EEEEEECB-TTBTCEEEEE-CTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             EEEEEEEC-CCcccEEEec-CCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            44555543 3589999973 33333357999999999999999999999999999999999999999999988653

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.63  E-value=1.2e-14  Score=81.90  Aligned_cols=75  Identities=28%  Similarity=0.380  Sum_probs=62.0

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+. ..+|||++.+ +.+.    ...+++|..+.++|||+++|.|++||.|++|||.++.++++.+++..++.+
T Consensus         5 ~~~v~l~k~-~~glG~~i~~-g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   82 (102)
T 2i1n_A            5 YEEIVLERG-NSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA   82 (102)
T ss_dssp             EEEEEEECB-TTBTSEEEEE-CTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             EEEEEEEEC-CCcCCEEEEc-ccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            355667653 4599999984 3322    245799999999999999999999999999999999999999999999875


Q ss_pred             C
Q psy3490          85 H   85 (88)
Q Consensus        85 ~   85 (88)
                      .
T Consensus        83 g   83 (102)
T 2i1n_A           83 G   83 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=3.6e-15  Score=82.82  Aligned_cols=74  Identities=30%  Similarity=0.370  Sum_probs=62.6

Q ss_pred             CcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         6 ~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++..+.+.+.+..+.+|||++.+  .   ..+++|..+.+++||+++|.|++||.|++|||+++ +.+++++..+++...
T Consensus         4 ~~~~r~v~l~k~~~~~lG~~i~~--~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~   77 (91)
T 2e7k_A            4 GSSGRMVGIRKTAGEHLGVTFRV--E---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNAS   77 (91)
T ss_dssp             CCCSCBCCBCCCTTCCCCEEEEE--S---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCC
T ss_pred             CCCcEEEEEEECCCCcEeEEEEe--c---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCC
Confidence            44456677777777799999973  1   23599999999999999988999999999999999 899999999998653

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=1.6e-14  Score=82.14  Aligned_cols=74  Identities=27%  Similarity=0.366  Sum_probs=59.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC-------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS-------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~-------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +.+++.+. ..+|||++.+ +...       ...+++|..+.+++||++++.|++||.|++|||+++.++++.+++.+++
T Consensus        10 ~~v~l~k~-~~~lG~~i~g-~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~   87 (107)
T 1uhp_A           10 LTLVLHRD-SGSLGFNIIG-GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK   87 (107)
T ss_dssp             EEEEECCS-SSCCSEEEEC-CCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeC-CCccCEEEEc-CCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            33445443 4599999983 3211       2447999999999999999459999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      .+.
T Consensus        88 ~~~   90 (107)
T 1uhp_A           88 TAK   90 (107)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            654

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.63  E-value=8.8e-15  Score=82.88  Aligned_cols=73  Identities=32%  Similarity=0.449  Sum_probs=62.5

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+++.+..+.+|||++.+ +. ....+++|..|.+++||+++| |++||.|++|||.++.++++.+++.+++..
T Consensus        16 ~~~v~l~k~~~~~lG~~~~~-~~-~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   88 (104)
T 1wi2_A           16 PRIVTLKKPPGAQLGFNIRG-GK-ASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA   88 (104)
T ss_dssp             CEEEEECCCTTCCCSEEEEC-CS-SSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             CEEEEEEeCCCCCccEEEEc-cc-CCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence            47788888777799999973 32 223468999999999999999 999999999999999999999999999863

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=3.6e-15  Score=84.36  Aligned_cols=70  Identities=21%  Similarity=0.342  Sum_probs=57.7

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++.+ ...+|||++. ++. ....+++|..+.+++||+++|+|++||.|++|||+++.++++.+++.+++.+
T Consensus        13 v~l~~-~~~g~G~~i~-~g~-~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   82 (103)
T 1uep_A           13 VHLRR-MESGFGFRIL-GGD-EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             CEEES-SSSSCCEEEC-CCC-STTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             EEEEe-CCCccCEEEe-eec-CCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34444 3449999996 232 2334689999999999999999999999999999999999999999999764

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.63  E-value=5.7e-15  Score=82.50  Aligned_cols=73  Identities=29%  Similarity=0.506  Sum_probs=58.6

Q ss_pred             EEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          11 IVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        11 ~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++.+ ...+|||++.++...  ....+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus         6 ~v~l~k-~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   80 (97)
T 2jil_A            6 EVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC   80 (97)
T ss_dssp             EEEEEC-BTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             EEEEEe-CCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            344543 345999999743221  1234799999999999999998999999999999999999999999999863

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.63  E-value=3.5e-15  Score=86.42  Aligned_cols=73  Identities=25%  Similarity=0.393  Sum_probs=59.6

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+  ..+|||++. ++.......++|.++.+++||+++|.|++||+|++|||.++.+++|++++++|+..
T Consensus        19 ~~~~~~~~--~~glG~~i~-gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   91 (118)
T 1v6b_A           19 VRLLRIKK--EGSLDLALE-GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA   91 (118)
T ss_dssp             EEEEEEES--CSCCCCEEE-EBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred             EEEEEECC--CCccCEEEE-cccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            35555554  348999997 34444444599999999999999956999999999999999999999999999754

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.63  E-value=1.1e-14  Score=81.09  Aligned_cols=73  Identities=30%  Similarity=0.360  Sum_probs=60.9

Q ss_pred             EEEEEECC-CCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~-~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+. .+.+|||++.+ +.  ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++...++.+.
T Consensus         5 ~~v~l~k~~~~~~lG~~~~~-~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   78 (95)
T 2vwr_A            5 LQVALHKRDSGEQLGIKLVR-RT--DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASG   78 (95)
T ss_dssp             EEEEEECSSTTCCCCEEEEE-CS--SSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             EEEEEEECCCCCcccEEEEe-cc--CCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45667765 34599999973 22  2346999999999999999999999999999999999999999999988653

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.62  E-value=2.3e-14  Score=79.84  Aligned_cols=77  Identities=26%  Similarity=0.370  Sum_probs=62.3

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .....+.+.+. +.+|||++.+ +...  ...+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++.+
T Consensus         4 g~~~~v~l~k~-~~~lG~~i~~-g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   81 (96)
T 1d5g_A            4 GDIFEVELAKN-DNSLGISVTG-GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT   81 (96)
T ss_dssp             TCEEEEEEECS-SSSCCEEEEC-CSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCEEEEEEEeC-CCCCCEEEEC-CCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            33455666653 4699999973 3322  234799999999999999998999999999999999999999999999864


Q ss_pred             C
Q psy3490          85 H   85 (88)
Q Consensus        85 ~   85 (88)
                      .
T Consensus        82 g   82 (96)
T 1d5g_A           82 G   82 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=7.7e-15  Score=83.45  Aligned_cols=79  Identities=28%  Similarity=0.439  Sum_probs=61.4

Q ss_pred             cccEEEEEECCC-CCcccEEEEeC--CCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490           7 VTSEIVVVPKAK-GEILGVVIVES--GWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus         7 ~~~~~~~i~~~~-~~~lG~~i~~~--~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      +..+.+.+...+ ..+|||++.++  +...  ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.++
T Consensus         6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   85 (107)
T 1wf8_A            6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVL   85 (107)
T ss_dssp             CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHH
T ss_pred             CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            334444444323 35999999852  2222  234799999999999999999999999999999999999999999999


Q ss_pred             HhCC
Q psy3490          82 KVNH   85 (88)
Q Consensus        82 k~~~   85 (88)
                      +...
T Consensus        86 ~~~~   89 (107)
T 1wf8_A           86 RNTK   89 (107)
T ss_dssp             HHCC
T ss_pred             hcCC
Confidence            8654

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.62  E-value=7.9e-16  Score=90.70  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=57.4

Q ss_pred             CCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          18 KGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        18 ~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+|||++.++.. .....++||..|.+++||+++|+|++||+|++|||+++.+++|++++.+++.+
T Consensus        46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~  113 (131)
T 1wfg_A           46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILES  113 (131)
T ss_dssp             SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred             CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            45699999974322 12234799999999999999999999999999999999999999999999876

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1e-14  Score=84.48  Aligned_cols=75  Identities=28%  Similarity=0.354  Sum_probs=62.2

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..+.+++.+.. .+|||++.+ +.+.    ...+++|..|.+++||+++|+|++||.|++|||+++.++++.+++.+++.
T Consensus        17 ~~~~v~l~r~~-~~lG~~i~~-~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   94 (120)
T 2eno_A           17 TEEEINLTRGP-SGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   94 (120)
T ss_dssp             EEEEEEEECCS-SSCSEEEEC-CTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH
T ss_pred             ceEEEEEEECC-CCCCEEEec-ccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34667777644 699999973 3322    24479999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy3490          84 N   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus        95 ~   95 (120)
T 2eno_A           95 A   95 (120)
T ss_dssp             H
T ss_pred             C
Confidence            4

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.62  E-value=3.2e-14  Score=78.58  Aligned_cols=76  Identities=25%  Similarity=0.321  Sum_probs=62.4

Q ss_pred             CCcccEEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           5 NPVTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         5 ~~~~~~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +|.....+++.+..+ .+|||++.++.   ...+++|..+.++|||+++| |++||.|++|||.++.++++.++...++.
T Consensus         3 ~~~~~~~v~l~k~~~~~~~G~~~~~~~---~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~   78 (91)
T 1m5z_A            3 TPVELHKVTLYKDSGMEDFGFSVADGL---LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAE   78 (91)
T ss_dssp             SCCEEEEEEEECCTTCSSSSEEEEECT---TSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCcceEEEEEEECCCCCCccEEEEecc---CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345556777777655 48999997322   12469999999999999999 99999999999999999999999888875


Q ss_pred             C
Q psy3490          84 N   84 (88)
Q Consensus        84 ~   84 (88)
                      .
T Consensus        79 ~   79 (91)
T 1m5z_A           79 S   79 (91)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.61  E-value=8.7e-15  Score=79.97  Aligned_cols=70  Identities=23%  Similarity=0.288  Sum_probs=58.4

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++.+. ..+|||++.+ +. ....+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++..
T Consensus         4 v~l~k~-~~g~G~~i~~-~~-~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   73 (85)
T 2i04_A            4 TKLRKS-SRGFGFTVVG-GD-EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI   73 (85)
T ss_dssp             EEEECB-TTBSSEEEEE-CC-STTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             EEEEEC-CCCCCEEEEc-cc-CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            445543 3499999973 22 2344699999999999999998999999999999999999999999999875

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.61  E-value=1.7e-14  Score=83.96  Aligned_cols=70  Identities=21%  Similarity=0.336  Sum_probs=58.3

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++.+ ...+|||++. ++. ....+++|..|.+++||+++|+|++||.|++|||+++.++++.++..+|+..
T Consensus        23 v~l~~-~~~glG~~~~-~g~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (123)
T 1ueq_A           23 TTLKK-SNMGFGFTII-GGD-EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV   92 (123)
T ss_dssp             EEEEC-CTTSCSEEEE-CCS-SSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTS
T ss_pred             EEEEe-CCCceeEEEe-ccc-CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            44443 2349999997 332 2345699999999999999999999999999999999999999999999874

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.61  E-value=2.4e-14  Score=81.59  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=61.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC----------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS----------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT   79 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~----------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~   79 (88)
                      +.+.+.+....+|||++.++....          ...+++|..+.++|||+++| |++||.|++|||.++.+++|.++..
T Consensus         9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~   87 (109)
T 1q3o_A            9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVN   87 (109)
T ss_dssp             EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            567777766679999997433211          12269999999999999999 9999999999999999999999999


Q ss_pred             HHHhCC
Q psy3490          80 YIKVNH   85 (88)
Q Consensus        80 ~lk~~~   85 (88)
                      +++...
T Consensus        88 ~l~~~~   93 (109)
T 1q3o_A           88 MIRQGG   93 (109)
T ss_dssp             HHHHTT
T ss_pred             HHHhCC
Confidence            998653

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.61  E-value=1.7e-14  Score=79.58  Aligned_cols=65  Identities=22%  Similarity=0.419  Sum_probs=56.2

Q ss_pred             EEECC-CCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          13 VVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        13 ~i~~~-~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++.+. ....|||.+.+        +++|.++.++|||+++|+|++||+|++|||.++.+++++++..+++++.
T Consensus         5 ~l~~~~~~~~~G~~~~~--------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~   70 (88)
T 3e17_A            5 LLMKSRANEEYGLRLGS--------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR   70 (88)
T ss_dssp             EEECBTTBCCCCEEEEE--------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCCCEEEeC--------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34443 34489999851        4899999999999999999999999999999999999999999998765

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.60  E-value=4.3e-14  Score=77.98  Aligned_cols=71  Identities=27%  Similarity=0.368  Sum_probs=60.2

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+++.+.. .+|||++.+ ..  ...+++|..+.++|||+++| |++||.|++|||.++.+.+|+++..+++..
T Consensus         5 ~r~v~l~k~~-~g~G~~~~~-~~--~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   75 (90)
T 2he4_A            5 PRLCHLRKGP-QGYGFNLHS-DK--SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR   75 (90)
T ss_dssp             CEEEEEECBT-TBCCEEEEE-CS--SSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred             cEEEEEEECC-CCccEEEEc-cC--CCCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3677787644 599999963 22  13469999999999999999 999999999999999999999999999875

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.8e-14  Score=83.25  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             EEEEEECCCCCcccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +.+.+.+...++|||++.++...       ....+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++
T Consensus        26 ~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  105 (123)
T 2iwq_A           26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR  105 (123)
T ss_dssp             EEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            56777776667999999743211       11247999999999999999999999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ...
T Consensus       106 ~~~  108 (123)
T 2iwq_A          106 KAG  108 (123)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            754

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.60  E-value=8.8e-15  Score=80.31  Aligned_cols=72  Identities=26%  Similarity=0.359  Sum_probs=59.8

Q ss_pred             EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+++.++...+|||++.+ +.+ ...+++|..+.++|||+++| |++||.|++|||.++.+++++++..+++...
T Consensus         3 ~~~v~~~~~~~lG~~l~~-~~~-~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   74 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITG-GRD-FHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP   74 (87)
T ss_dssp             EEEEEECSSSCCSEEEEE-EGG-GTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred             EEEEEECCCCccCEEEec-ccC-CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            355666666699999973 222 23468999999999999998 9999999999999999999999999998753

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.60  E-value=2.7e-14  Score=82.05  Aligned_cols=74  Identities=27%  Similarity=0.491  Sum_probs=62.8

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +..+.+.+.+..+.+|||.+...     ..+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++...
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~~-----~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   97 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRNE-----MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   97 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEEC-----SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CceEEEEEEeCCCCceeEEEEeC-----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34567888887766999999632     235999999999999999944999999999999999999999999998653

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.60  E-value=5.5e-15  Score=83.94  Aligned_cols=76  Identities=21%  Similarity=0.386  Sum_probs=62.5

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCG-QLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g-~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+.+.+....+|||++.+ +.+ ...+++|..|.+++||+++| +|++||+|++|||.++.++++.+++.+++.+.
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~g-g~~-~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~   93 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKG-GYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   93 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred             CEEEEEEEcCCCCCCCEEEEc-cCC-CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            346666776665699999973 222 22358999999999999999 59999999999999999999999999998754

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.60  E-value=7.7e-15  Score=82.08  Aligned_cols=76  Identities=25%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             CCcccEEEE--EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           5 NPVTSEIVV--VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         5 ~~~~~~~~~--i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +++.++.++  +.+....+|||++..     ...+++|..+.++|||+++|+|++||.|++|||+++.++++.+++.+++
T Consensus         3 ~~~~~~~~~v~l~~~~~~glG~~~~~-----~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~   77 (96)
T 2qkv_A            3 PRNSLEKFNVDLMKKAGKELGLSLSP-----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFK   77 (96)
T ss_dssp             CCCCCCCEEEEEECBTTBCCCEEEEE-----CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ChHHCceEEEEEEeCCCCCccEEEEe-----CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            455554444  444455699999863     2235999999999999999989999999999999999999999999988


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ...
T Consensus        78 ~~~   80 (96)
T 2qkv_A           78 GAN   80 (96)
T ss_dssp             TCS
T ss_pred             cCC
Confidence            754

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.60  E-value=3.7e-14  Score=80.01  Aligned_cols=74  Identities=27%  Similarity=0.346  Sum_probs=61.8

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+++.+. +.+|||++.++..   ..+++|..+.++|||+++|+|++||.|++|||.++.+.++.+++..++.+.
T Consensus        11 ~~~~v~l~k~-~~glG~~~~~~~~---~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A           11 EPRRIVIHRG-STGLGFNIVGGEX---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             SCEEEEEECB-TTBTSEEEEECC----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             ccEEEEEEeC-CCccCEEEECCCC---CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3466777765 4599999973321   346999999999999999999999999999999999999999999988654

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.60  E-value=4.3e-14  Score=82.13  Aligned_cols=82  Identities=27%  Similarity=0.381  Sum_probs=65.2

Q ss_pred             cCCCcccEEEEEECCCCC-cccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGE-ILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~-~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      |++++..+.+.+....+. +|||++...... ....+++|..|.++|||+++|+|++||.|++|||.++.+++++++..+
T Consensus        23 y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~  102 (121)
T 2kom_A           23 YNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSL  102 (121)
T ss_dssp             CCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHH
T ss_pred             ccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence            556666676666554444 999999732211 113469999999999999998899999999999999999999999999


Q ss_pred             HHhC
Q psy3490          81 IKVN   84 (88)
Q Consensus        81 lk~~   84 (88)
                      ++..
T Consensus       103 l~~~  106 (121)
T 2kom_A          103 LRST  106 (121)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            9874

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.60  E-value=1.9e-14  Score=80.13  Aligned_cols=72  Identities=25%  Similarity=0.353  Sum_probs=57.8

Q ss_pred             EEEECCCCCcccEEEEeCCC--CC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          12 VVVPKAKGEILGVVIVESGW--GS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~--~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +++.+.++++|||++.++..  +.    ...+++|..+.++|||++ | |++||.|++|||.++.++++.+++..++.+.
T Consensus         5 ~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (95)
T 1mfg_A            5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ   82 (95)
T ss_dssp             EEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCC
Confidence            44555556699999984321  11    234799999999999999 6 9999999999999999999999999988653

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=83.99  Aligned_cols=78  Identities=21%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECC-CCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-GLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~-~~~~~~~~~~lk~~~   85 (88)
                      ..+.+.+.+..+.+|||++.++... ....+++|..+.++|||+++|+|++||.|++|||.++. ++++.+++.+++.+.
T Consensus        20 ~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~   99 (117)
T 2o2t_A           20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK   99 (117)
T ss_dssp             CEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCC
Confidence            3466778876677999999743221 12347999999999999999999999999999999998 999999999998654

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.60  E-value=7.7e-15  Score=84.41  Aligned_cols=81  Identities=35%  Similarity=0.440  Sum_probs=65.7

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ++.+...+.+.+.+. ..+|||++. ++.+....+++|..|.+++||+++|+|++||.|++|||.++.++++.++..+++
T Consensus        12 ~~~~~~~~~v~l~~~-~~glG~~l~-~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~   89 (116)
T 2dm8_A           12 PIVPGQEMIIEISKG-RSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR   89 (116)
T ss_dssp             CCCTTSCEEEEEECC-SSCCCCCCB-CCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHH
T ss_pred             ccCCCCEEEEEEEEC-CCcccEEEe-CCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456666677777643 459999996 333333347999999999999999999999999999999999999999999998


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ...
T Consensus        90 ~~~   92 (116)
T 2dm8_A           90 QTP   92 (116)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            653

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.59  E-value=2.4e-14  Score=82.02  Aligned_cols=75  Identities=27%  Similarity=0.423  Sum_probs=60.1

Q ss_pred             EEEEECCCC-CcccEEEEeC--CCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPKAKG-EILGVVIVES--GWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~~~~-~~lG~~i~~~--~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+++...++ .+|||++.+.  +...  ...+++|..+.++|||+++|+|++||.|++|||.++.++++.+++.+++.+.
T Consensus         5 ~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   84 (113)
T 2g5m_B            5 LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK   84 (113)
T ss_dssp             EEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             EEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            344444344 4999999852  2221  2347999999999999999999999999999999999999999999998754

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.59  E-value=3.3e-14  Score=81.12  Aligned_cols=75  Identities=29%  Similarity=0.414  Sum_probs=60.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC-CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~-~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+. ..+|||++.++.... ...+++|..+.++|||+++|+|++||.|++|||+++.++++.+++..++...
T Consensus        10 ~~v~l~~~-~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A           10 FTVELERG-PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             EEEEEECC-TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             EEEEEEEC-CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            44445543 359999998432211 2457999999999999999999999999999999999999999999998753

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=3.6e-14  Score=78.60  Aligned_cols=73  Identities=34%  Similarity=0.526  Sum_probs=60.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+. ..+|||++. ++. ....+++|..+.+++||+++|.|++||.|++|||.++.++++.++..+++...
T Consensus         7 r~v~l~k~-~~glG~~l~-~~~-~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   79 (93)
T 2dkr_A            7 GVVELPKT-DEGLGFNIM-GGK-EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ   79 (93)
T ss_dssp             CEEEEECC-TTCCCEEEE-CSS-SSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             EEEEEEeC-CCCccEEEe-ccc-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            66777764 479999997 332 23346999999999999999669999999999999999999999999998654

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.59  E-value=7.8e-15  Score=80.82  Aligned_cols=73  Identities=22%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+....+|||++.+ +.. ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++...
T Consensus         3 ~~~~v~~~~~~~~G~~l~g-g~~-~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   75 (89)
T 2q3g_A            3 DSFKVVLEGPAPWGFRLQG-GKD-FNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACG   75 (89)
T ss_dssp             EEEEEEEESSSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCT
T ss_pred             cEEEEEEcCCCcccEEEEC-cCC-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3445555555699999973 222 23468999999999999999 9999999999999999999999999988653

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.59  E-value=1.9e-14  Score=80.61  Aligned_cols=72  Identities=17%  Similarity=0.308  Sum_probs=58.5

Q ss_pred             EEEEEECCCCC--cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGE--ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~--~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +.+.+.+.+..  +|||++.... .....+++|..+.++|||+++| |+.||.|++|||.++.+++++++..++++
T Consensus         8 ~~v~i~k~~~~~~~~Gf~v~~~~-~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~   81 (94)
T 3kzd_A            8 HSIHIEKSDTAADTYGFSLSSVE-EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ   81 (94)
T ss_dssp             EEEEEEC------CCSEEEEEEC-SSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS
T ss_pred             eEEEEEeCCCCcCCcCEEEEecC-CCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            66788887643  8999997322 2234579999999999999998 99999999999999999999999998875

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.59  E-value=1.3e-14  Score=82.71  Aligned_cols=71  Identities=28%  Similarity=0.322  Sum_probs=59.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .++.+.+..+.+|||++.+     ...+++|..+.++|||+++|+|++||.|++|||+++.++++.+++.+++...
T Consensus         4 ~~v~L~k~~~~glG~~i~~-----~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~   74 (106)
T 2la8_A            4 FNVDLMKKAGKELGLSLSP-----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN   74 (106)
T ss_dssp             EEEEECCBSSSTTCCEEEE-----CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCB
T ss_pred             EEEEEEeCCCCccCEEEEe-----CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            3455665666699999963     2246999999999999999999999999999999999999999999988653

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.58  E-value=2e-14  Score=78.46  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=56.3

Q ss_pred             EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +......+|||++. ++.+ ...+++|..+.++|||+++| |++||.|++|||.++.+.++.++...++...
T Consensus         5 v~l~~~~~~G~~l~-gg~~-~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   73 (85)
T 1rgw_A            5 VTLTGPGPWGFRLQ-GGKD-FNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS   73 (85)
T ss_dssp             EEECCSSCCCEEEC-CCGG-GTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCS
T ss_pred             EEEeCCCccCEEEE-eccC-CCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCC
Confidence            33344569999996 2322 23458999999999999988 9999999999999999999999999987653

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.58  E-value=4.5e-14  Score=78.93  Aligned_cols=72  Identities=33%  Similarity=0.553  Sum_probs=58.5

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+ .+.+|||++.  +......+++|..+.+++||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus         7 ~~v~l~~-~~~~lG~~i~--~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   78 (97)
T 1n7e_A            7 YTVELKR-YGGPLGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA   78 (97)
T ss_dssp             EEEEEEC-TTSCCCEEEE--CCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             EEEEEEe-CCCCcCEEEE--cccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4455543 3457999996  2223334699999999999999999999999999999999999999999999843

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.58  E-value=3.3e-14  Score=79.03  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...+.+.+.+ ...+|||++.. +..  ..+++|..+.++|||+++| |++||.|++|||.++.+++|+++..+++.+.
T Consensus         4 ~~~r~v~l~~-~~~~~G~~l~~-~~~--~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (95)
T 3r68_A            4 HQPRVVVIKK-GSNGYGFYLRA-GPE--QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG   77 (95)
T ss_dssp             CCCEEEEEEC-BTTBCSCEEEE-C----CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCcEEEEEec-CCCcccEEEEe-cCC--CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3446677775 34699999963 221  2369999999999999999 9999999999999999999999999998753

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.58  E-value=5.8e-14  Score=79.13  Aligned_cols=75  Identities=24%  Similarity=0.357  Sum_probs=59.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCC--------CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSM--------LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~--------~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      +.+.+.+.....|||++.+ ..+..        ..+++|..+.++|||+++|+|++||.|++|||.++.++++.++..++
T Consensus         6 ~~v~l~~~~~~~lG~~~~~-~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l   84 (103)
T 2fcf_A            6 RRVELWREPSKSLGISIVG-GRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   84 (103)
T ss_dssp             EEEEECCCC-CCCCEEEEC-CCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEeCCCCceeEEEEc-cCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4566777666799999973 22211        24699999999999999999999999999999999999999999999


Q ss_pred             HhCC
Q psy3490          82 KVNH   85 (88)
Q Consensus        82 k~~~   85 (88)
                      +...
T Consensus        85 ~~~~   88 (103)
T 2fcf_A           85 RKAG   88 (103)
T ss_dssp             HTCC
T ss_pred             HhCC
Confidence            8754

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.58  E-value=5.5e-14  Score=79.50  Aligned_cols=75  Identities=25%  Similarity=0.313  Sum_probs=62.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCC-----CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW-----GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~-----~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+..+.+|||.+.+...     .....+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++..
T Consensus        17 ~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   95 (104)
T 2z17_A           17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSS   95 (104)
T ss_dssp             CEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Confidence            5566887767799999974211     1123469999999999999999 999999999999999999999999999875


Q ss_pred             C
Q psy3490          85 H   85 (88)
Q Consensus        85 ~   85 (88)
                      .
T Consensus        96 ~   96 (104)
T 2z17_A           96 G   96 (104)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.58  E-value=7.6e-14  Score=86.85  Aligned_cols=81  Identities=19%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCC-CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCC--CCHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSML-PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG--LPLSTCQT   79 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~-~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~--~~~~~~~~   79 (88)
                      ++.+.....+++.+ .+.+|||++. ++.+... .+++|..+.++|||+++|+|+.||+|++|||.++.+  +++.+++.
T Consensus        13 ~~~~~~~~~v~~~~-~~~~lG~~i~-~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~   90 (206)
T 3r0h_A           13 EIKPNKKILIELKV-EKKPMGVIVC-GGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQ   90 (206)
T ss_dssp             CCCTTSCEEEEEEC-TTSCCCEEEE-CCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHH
T ss_pred             CCCCCCEEEEEEEe-CCCCcCEEEe-cccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHH
Confidence            34455556667775 4579999998 4443333 479999999999999999999999999999999999  99999999


Q ss_pred             HHHhCC
Q psy3490          80 YIKVNH   85 (88)
Q Consensus        80 ~lk~~~   85 (88)
                      +++...
T Consensus        91 ~~~~~~   96 (206)
T 3r0h_A           91 LFHTTY   96 (206)
T ss_dssp             HHHSCC
T ss_pred             HHHhcC
Confidence            998754

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.58  E-value=2.9e-14  Score=80.82  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+..+.+|||.+.. .  ....+++|..+.++|||+++| |++||.|++|||.++.+++|.++..+++.+.
T Consensus         3 r~v~l~~~~~~~~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   74 (106)
T 3ngh_A            3 RESKLSKQEGQNYGFFLRI-E--KDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSG   74 (106)
T ss_dssp             EEEEEECCTTCCCCCEEEC-C--TTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCeeCEEEEE-E--eCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5678888877899999862 2  223458999999999999999 9999999999999999999999999997543

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.57  E-value=2.2e-14  Score=78.78  Aligned_cols=69  Identities=23%  Similarity=0.336  Sum_probs=56.8

Q ss_pred             EEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          13 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        13 ~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++..+...+|||++.+ +.+ ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..
T Consensus         6 ~v~l~~~~~~G~~l~~-g~~-~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   74 (88)
T 2uzc_A            6 SVSLVGPAPWGFRLQG-GKD-FNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC   74 (88)
T ss_dssp             EEEEESSSCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             EEEEcCCCcccEEEEC-cCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3344445699999973 322 23458999999999999999 999999999999999999999999998865

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.57  E-value=5e-14  Score=78.55  Aligned_cols=74  Identities=22%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+.. .+|||++..........+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..
T Consensus         4 ~r~v~l~k~~-~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   77 (96)
T 2v90_A            4 PRCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ   77 (96)
T ss_dssp             CEEEEEECBT-TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CEEEEEEeCC-CcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3667777644 4999999632111223369999999999999999 999999999999999999999999999864

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=81.35  Aligned_cols=73  Identities=25%  Similarity=0.387  Sum_probs=58.8

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC-CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~-~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+.+.+. ..+|||.+.+ +... ...+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.+++..
T Consensus        13 ~~v~l~~~-~~g~G~~l~~-~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   86 (104)
T 2djt_A           13 FSVELVRG-YAGFGLTLGG-GRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG   86 (104)
T ss_dssp             EEEEEECC-SSSCCEEEEC-CEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT
T ss_pred             EEEEEEeC-CCCccEEEEe-ccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            44555543 3599999972 2222 134689999999999999998999999999999999999999999998864

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.57  E-value=2.8e-14  Score=82.29  Aligned_cols=73  Identities=21%  Similarity=0.311  Sum_probs=58.8

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC-----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS-----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~-----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+..+.+|||++. ++.+.     ...+++|..+.+++||+ ++ |++||.|++|||.++.++++.+++.+++.+
T Consensus        16 ~~v~l~k~~~~glG~~i~-gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   92 (117)
T 2csj_A           16 YTVTLQKDSKRGFGIAVS-GGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKS   92 (117)
T ss_dssp             EEEEEECCSSSTTCEEEE-CCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             EEEEEEECCCCccCEEEe-CCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            345566555569999998 34332     24469999999999997 55 999999999999999999999999999875


Q ss_pred             C
Q psy3490          85 H   85 (88)
Q Consensus        85 ~   85 (88)
                      .
T Consensus        93 ~   93 (117)
T 2csj_A           93 G   93 (117)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.56  E-value=3.8e-14  Score=82.93  Aligned_cols=79  Identities=24%  Similarity=0.337  Sum_probs=61.9

Q ss_pred             CcccEEEEEEC--CCCCcccEEEEeCCCCC---CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490           6 PVTSEIVVVPK--AKGEILGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus         6 ~~~~~~~~i~~--~~~~~lG~~i~~~~~~~---~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      +...+.+.+..  ....+|||++.++....   ...+++|..+.+++||+++|+|++||.|++|||.++.++++.++..+
T Consensus        11 ~~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   90 (129)
T 2dmz_A           11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEV   90 (129)
T ss_dssp             SCCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            33444444444  44559999997432211   23479999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q psy3490          81 IKVN   84 (88)
Q Consensus        81 lk~~   84 (88)
                      ++..
T Consensus        91 l~~~   94 (129)
T 2dmz_A           91 LRNA   94 (129)
T ss_dssp             HHHC
T ss_pred             HHcC
Confidence            9863

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=2e-15  Score=85.12  Aligned_cols=80  Identities=26%  Similarity=0.324  Sum_probs=63.2

Q ss_pred             cCCCcccEEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      |++++.++.+.+...++ .+|||++.++ .+ ...+++|..+.+++||+++|.|++||.|++|||.++.++++.++..++
T Consensus         4 ~~~~~~~~~~~v~l~~~~~g~G~~~~~~-~~-~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   81 (103)
T 1wfv_A            4 GSSGQDFDYFTVDMEKGAKGFGFSIRGG-RE-YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI   81 (103)
T ss_dssp             CCSCCCSCCEECCEECCTTSSSBCCEEE-TT-TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCCccCceEEEEEEecCCCcCCEEEecc-cc-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            56677666555554333 4899999632 22 223699999999999999998999999999999999999999999988


Q ss_pred             HhC
Q psy3490          82 KVN   84 (88)
Q Consensus        82 k~~   84 (88)
                      +..
T Consensus        82 ~~~   84 (103)
T 1wfv_A           82 KSG   84 (103)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            743

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.56  E-value=1.7e-14  Score=81.41  Aligned_cols=72  Identities=25%  Similarity=0.353  Sum_probs=57.6

Q ss_pred             EEEECCCCCcccEEEEeCCC--CC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          12 VVVPKAKGEILGVVIVESGW--GS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~--~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +++.+.++++|||++.++..  +.    ...+++|..+.++|||++ | |++||.|++|||.++.++++.+++..++.+.
T Consensus        13 ~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   90 (103)
T 1n7t_A           13 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ   90 (103)
T ss_dssp             EEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHHHCC
T ss_pred             EEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhhcCC
Confidence            33444445699999984321  11    344799999999999999 6 9999999999999999999999999998654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.56  E-value=9.3e-15  Score=94.93  Aligned_cols=74  Identities=27%  Similarity=0.293  Sum_probs=62.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+..+.+|||+|.+ +.+ ...+++|..|.+++||++++.|++||+|++|||+++.+++|.+++.+++..+
T Consensus        79 r~V~L~k~~~~glGf~I~g-g~d-~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g  152 (263)
T 1z87_A           79 RRVTVRKADAGGLGISIKG-GRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTG  152 (263)
T ss_dssp             EEECCCTTTTCCCCCEEEE-ETT-TTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCC
T ss_pred             EEEEEEeCCCCCEeEEEee-ccC-CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence            6677777666799999983 332 2346999999999999995459999999999999999999999999998764

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.56  E-value=2.1e-14  Score=84.25  Aligned_cols=70  Identities=23%  Similarity=0.283  Sum_probs=58.4

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++.+ ...+|||++.+ +. ....+++|..+.++|+|+++|+|++||.|++|||.++.+++|.+++.+++.+
T Consensus        22 v~l~~-~~~g~G~~i~g-~~-~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~   91 (129)
T 2kpk_A           22 TKLRK-SSRGFGFTVVG-GD-EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI   91 (129)
T ss_dssp             EEEEE-CSSCCSEEEEE-EE-ETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             EEEEE-CCCcccEEEeC-cc-CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            44554 33499999973 22 2334699999999999999999999999999999999999999999999876

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=7.2e-14  Score=80.23  Aligned_cols=75  Identities=29%  Similarity=0.388  Sum_probs=61.0

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCC--CC---CcEEEEEECCCChhhh-hCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGS--ML---PTVVIANLAPAGAAAR-CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~--~~---~~i~I~~v~~g~~a~~-~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+.+.+.+....+|||++.++....  ..   .+++|..|.+++||++ +| |++||.|++|||.++.++++.++..+++
T Consensus        11 ~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~   89 (114)
T 1uew_A           11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3668788777779999997432111  11   1479999999999999 66 9999999999999999999999999998


Q ss_pred             hC
Q psy3490          83 VN   84 (88)
Q Consensus        83 ~~   84 (88)
                      ..
T Consensus        90 ~~   91 (114)
T 1uew_A           90 DA   91 (114)
T ss_dssp             HT
T ss_pred             cC
Confidence            63

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=3.2e-14  Score=80.06  Aligned_cols=78  Identities=26%  Similarity=0.303  Sum_probs=62.5

Q ss_pred             CCcccEEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           5 NPVTSEIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         5 ~~~~~~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+..++.+.+.+.. ..+|||++.+. . ....+++|..|.+++||+++| |++||.|++|||.++.++.+.+++..++.
T Consensus         5 ~~~~~~~v~l~~~~~~~~lG~~~~~~-~-~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~   81 (101)
T 1uez_A            5 SSGEVRLVSLRRAKAHEGLGFSIRGG-S-EHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG   81 (101)
T ss_dssp             CSCCCEEECCCCCCTTTCSSEEEEEC-T-TTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred             CCCccEEEEEEECCCCCcccEEEeCC-C-CCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC
Confidence            45666777777644 34999999732 2 223469999999999999999 99999999999999999999888887765


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ..
T Consensus        82 ~~   83 (101)
T 1uez_A           82 SK   83 (101)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=1.5e-14  Score=83.62  Aligned_cols=73  Identities=22%  Similarity=0.423  Sum_probs=60.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhh-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~-g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+....+|||++.+ +.+ ...+++|..|.++|||+++ +.|++||.|++|||.++.+++|.+++.+++..
T Consensus        17 ~~v~l~k~~~~~~G~~l~g-g~~-~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~   90 (119)
T 2cs5_A           17 VLIRMKPDENGRFGFNVKG-GYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   90 (119)
T ss_dssp             EEEEECCCSSSCCSEEEEE-EGG-GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCcCEEEec-ccC-CCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            5566776555589999973 322 2335999999999999998 34999999999999999999999999999865

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.6e-14  Score=81.33  Aligned_cols=79  Identities=20%  Similarity=0.294  Sum_probs=64.5

Q ss_pred             CCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           4 LNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         4 ~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..+.+++.+.+.+....+|||++.+ +.. ...+++|..|.+++||+++|.|++||.|++|||.++.+. +.+++..++.
T Consensus         5 ~~~~~~~~~~v~~~~~~~~G~~~~g-g~~-~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~   81 (100)
T 2edp_A            5 SSGGSFQYVPVQLQGGAPWGFTLKG-GLE-HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG   81 (100)
T ss_dssp             CCCCCCEEEEEECCSCSCCCCCEEE-EGG-GTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT
T ss_pred             CCCCCcEEEEEEECCCCCcCEEEec-cCC-CCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh
Confidence            4567778888988766699999973 222 223589999999999999944999999999999999987 8889999886


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ..
T Consensus        82 ~~   83 (100)
T 2edp_A           82 SF   83 (100)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.55  E-value=1.6e-13  Score=84.45  Aligned_cols=77  Identities=27%  Similarity=0.402  Sum_probs=63.9

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCC----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSM----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ...+++++.+. +.+|||++. ++.+.+    ..+++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus         4 ~~~~~v~l~~~-~~~lG~~i~-~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   81 (196)
T 3gsl_A            4 MEYEEITLERG-NSGLGFSIA-GGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK   81 (196)
T ss_dssp             EEEEEEEEECB-TTBSSEEEE-CCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             cEEEEEEEEEC-CCCCCEEEE-cccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34567777764 568999998 343332    457999999999999999999999999999999999999999999888


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ...
T Consensus        82 ~~g   84 (196)
T 3gsl_A           82 EAG   84 (196)
T ss_dssp             TSC
T ss_pred             hCC
Confidence            654

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.55  E-value=3.6e-15  Score=101.15  Aligned_cols=82  Identities=59%  Similarity=0.938  Sum_probs=70.2

Q ss_pred             cCCCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +.+++..+.+.+.+.++++|||++.+...+...++++|..+.++|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus       199 ~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~  278 (388)
T 3suz_A          199 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK  278 (388)
T ss_dssp             TCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred             hcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            46777889999998888899999974333444556899999999999999999999999999999999999999999998


Q ss_pred             hC
Q psy3490          83 VN   84 (88)
Q Consensus        83 ~~   84 (88)
                      ..
T Consensus       279 ~~  280 (388)
T 3suz_A          279 GL  280 (388)
T ss_dssp             TC
T ss_pred             hc
Confidence            75

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.54  E-value=1.2e-13  Score=80.25  Aligned_cols=75  Identities=21%  Similarity=0.405  Sum_probs=60.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCC--CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW--GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~--~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+....+|||++.++..  .....+++|..+.+++||+++|.|++||.|++|||+++.+++++++..+++..
T Consensus        17 ~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   93 (122)
T 1v5q_A           17 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4566666555799999973311  11234589999999999999988999999999999999999999999999864

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.54  E-value=6e-14  Score=79.79  Aligned_cols=78  Identities=24%  Similarity=0.303  Sum_probs=61.8

Q ss_pred             cccEEEEEECCCCCcccEEEE-----eCCCC-CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490           7 VTSEIVVVPKAKGEILGVVIV-----ESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~-----~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      ...+.+++.+. +.+|||++.     ++... ....+++|..+.++|||+++|+|++||.|++|||.++.++++.+++.+
T Consensus         8 ~~~~~v~l~k~-~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAKN-DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEESS-SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEEC-CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            33455666653 469999995     22111 124579999999999999999999999999999999999999999999


Q ss_pred             HHhCC
Q psy3490          81 IKVNH   85 (88)
Q Consensus        81 lk~~~   85 (88)
                      ++.+.
T Consensus        87 ~~~~g   91 (108)
T 1q7x_A           87 LRNTG   91 (108)
T ss_dssp             HHHTT
T ss_pred             HHcCC
Confidence            98753

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.54  E-value=1.9e-14  Score=79.61  Aligned_cols=70  Identities=26%  Similarity=0.359  Sum_probs=57.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+++.+..+ +|||++.  +. ....+++|..+.++|||+++| |++||.|++|||.++.+++++++..+++..
T Consensus         5 r~v~l~k~~~-~~G~~l~--~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (91)
T 2vsp_A            5 KLCRLAKGEN-GYGFHLN--AI-RGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS   74 (91)
T ss_dssp             EEEEEECBTT-BTSCCCB--CC-TTCSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred             EEEEEEeCCC-cccEEEE--ec-cCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            6677876543 8999995  21 223458999999999999999 999999999999999999999999999864

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.54  E-value=1.7e-13  Score=77.34  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=53.9

Q ss_pred             cccEEEEeCCCC----------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          21 ILGVVIVESGWG----------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        21 ~lG~~i~~~~~~----------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +|||++.++...          ....+++|..+.++|||+++| |++||.|++|||.++.+.+|+++...++..
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   92 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR   92 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCT
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            799999833221          224479999999999999999 999999999999999999999999999754

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.54  E-value=3.5e-13  Score=75.34  Aligned_cols=70  Identities=23%  Similarity=0.334  Sum_probs=58.5

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+. ..+|||++.. ..  ...+++|..+.++|||+++| |++||.|++|||+++.++++.++..+++..
T Consensus        11 ~~~~l~~~-~~g~G~~~~~-~~--~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   80 (98)
T 2jxo_A           11 RLCTMKKG-PSGYGFNLHS-DK--SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG   80 (98)
T ss_dssp             EEEEEECT-TTCCCEEEEC-CC--SSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             EEEEEEeC-CCcccEEEEe-cC--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            55666653 3599999962 22  23369999999999999999 999999999999999999999999999875

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.53  E-value=2.6e-13  Score=76.93  Aligned_cols=73  Identities=22%  Similarity=0.283  Sum_probs=59.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+++.+..+.+|||++.++....    ...+++|..+.++|||+ +| |++||.|++|||.++.+.++.+++..++..
T Consensus         9 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (107)
T 2h2b_A            9 HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKS   85 (107)
T ss_dssp             EEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             EEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCC
Confidence            567788776679999998432211    23479999999999999 66 999999999999999999999988877754

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-13  Score=77.04  Aligned_cols=72  Identities=25%  Similarity=0.372  Sum_probs=59.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+++.+.....|||++.+ .. ....+++|..+.+++||+++| |++||.|++|||.++.+.++.+++..++..
T Consensus        12 ~~v~l~~~~~~~lG~~~~~-~~-~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   83 (100)
T 2eeh_A           12 HSVRVEKSPAGRLGFSVRG-GS-EHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSS   83 (100)
T ss_dssp             CCEEECCCSSSSCSEEEEC-CT-TTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCccEEEEc-cc-cCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCC
Confidence            5567776666689999973 22 223469999999999999999 999999999999999999999999998764

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.53  E-value=2.7e-13  Score=75.31  Aligned_cols=74  Identities=24%  Similarity=0.312  Sum_probs=57.3

Q ss_pred             EEEEECCC-CCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          11 IVVVPKAK-GEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        11 ~~~i~~~~-~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++...+ ..+|||++.+....  ....+++|..+.+++||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus         5 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (97)
T 2iwn_A            5 TFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT   81 (97)
T ss_dssp             EEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred             EEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            33343333 34999999732111  1234699999999999999988999999999999999999999999988764

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.52  E-value=1.2e-13  Score=76.34  Aligned_cols=68  Identities=25%  Similarity=0.299  Sum_probs=56.2

Q ss_pred             EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +......+|||++.+ +. ....+++|..+.++|||+++| |++||.|++|||.++.+..+.++..+++..
T Consensus         7 v~~~~~~~~G~~l~~-~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (91)
T 2pkt_A            7 IDLQGPGPWGFRLVG-GK-DFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGC   74 (91)
T ss_dssp             EEEESSSCCSEEEEE-EG-GGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             EEECCCCCCCEEEEc-cC-CCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            333445699999973 22 222468999999999999999 999999999999999999999999998863

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.52  E-value=2.9e-13  Score=74.81  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+++.+. ..+|||.+.  +.    .+++|..+.++|||+++| |+.||.|++|||.++.++++.++..+++...
T Consensus         4 ~r~v~l~~~-~~g~G~~l~--~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   72 (91)
T 2f5y_A            4 YRQITIPRG-KDGFGFTIC--CD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP   72 (91)
T ss_dssp             EEEEEEECB-TTBTSEEEE--CS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             eEEEEEEeC-CCCccEEEe--cC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            366777753 358999995  21    238999999999999999 9999999999999999999999999998643

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.52  E-value=3.4e-13  Score=75.12  Aligned_cols=71  Identities=24%  Similarity=0.393  Sum_probs=57.1

Q ss_pred             EEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+. ..+|||++.++....    ...+++|..+.++|||+++| |++||.|++|||.++.+.++.+++..++..
T Consensus         7 v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   81 (97)
T 2w4f_A            7 LTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA   81 (97)
T ss_dssp             EEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             EEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            445543 459999997433211    23579999999999999999 999999999999999999999888887654

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=8e-13  Score=75.29  Aligned_cols=65  Identities=26%  Similarity=0.398  Sum_probs=54.6

Q ss_pred             CCcccEEEEeCCCC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          19 GEILGVVIVESGWG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        19 ~~~lG~~i~~~~~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+|||++.++...    ....+++|..|.+++||+++| |++||.|++|||+++.+.++.+++..++..
T Consensus        25 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   93 (110)
T 1x5q_A           25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA   93 (110)
T ss_dssp             SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCC
Confidence            45999999743221    123579999999999999999 999999999999999999999998888754

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-13  Score=77.33  Aligned_cols=71  Identities=30%  Similarity=0.473  Sum_probs=59.2

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+ .+.+|||.+. ++.   ..+++|..+.+++||+++|+|++||.|++|||.++.++++.+++.+++.+
T Consensus        16 ~~~v~l~~-~~~~lG~~l~-~~~---~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   86 (111)
T 2dlu_A           16 VEEVELIN-DGSGLGFGIV-GGK---TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC   86 (111)
T ss_dssp             EEEEEEEC-CSSCCCEEEE-CCS---SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEEe-CCCccCEEEe-ccC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            35566664 3469999996 222   23599999999999999999999999999999999999999999999754

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.50  E-value=1.2e-13  Score=85.69  Aligned_cols=73  Identities=25%  Similarity=0.375  Sum_probs=62.4

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..+.+.+.+..+.+|||++.+ +. ....+++|..|.++|||+++| |++||.|++|||.++.++++.+++.+++.
T Consensus        84 ~~~~v~l~k~~~~~lG~~i~~-~~-~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~  156 (192)
T 3k1r_A           84 KLKEVRLDRLHPEGLGLSVRG-GL-EFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT  156 (192)
T ss_dssp             SCEEEEEETTSTTCCCEEEEE-EG-GGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS
T ss_pred             ceEEEEEEeCCCCceeEEEEc-cc-ccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC
Confidence            346788888767799999973 22 123469999999999999999 99999999999999999999999999986

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=76.19  Aligned_cols=65  Identities=26%  Similarity=0.234  Sum_probs=54.9

Q ss_pred             CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ....+|||++. ++.+ ...+++|..+.+++||+++| |++||.|++|||.++.++++.++...++..
T Consensus        15 ~~~~~~G~~l~-gg~~-~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   79 (94)
T 2eeg_A           15 RGPSPWGFRLV-GGRD-FSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGC   79 (94)
T ss_dssp             CCSSCCSCCEE-CCTT-TTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTC
T ss_pred             eCCCccCEEEE-CccC-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            44469999997 3332 23458999999999999998 999999999999999999999999888764

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.50  E-value=5.3e-13  Score=76.99  Aligned_cols=74  Identities=27%  Similarity=0.341  Sum_probs=60.8

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+.+.+.+.. .+|||++.++.   ...+++|..+.++|||+++|.|++||.|++|||.++.++++.+++..++...
T Consensus        14 ~~~~v~l~k~~-~glG~~l~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   87 (119)
T 1tp5_A           14 EPRRIVIHRGS-TGLGFNIVGGE---DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   87 (119)
T ss_dssp             SCEEEEEECTT-SCCCEEEEECG---GGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             ccEEEEEEECC-CCccEEEecCC---CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34667777643 58999997322   1246999999999999999989999999999999999999999988887654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.50  E-value=6.9e-13  Score=73.52  Aligned_cols=66  Identities=27%  Similarity=0.473  Sum_probs=55.0

Q ss_pred             EEEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+.+ ..+|||.+. ++        +|..|.++|||+++| |++||.|++|||.++.+.++.++..+++.+.
T Consensus        13 ~~~~i~~~~~~~~lG~~~~-~G--------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g   79 (90)
T 1y7n_A           13 TTVLIRRPDLRYQLGFSVQ-NG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV   79 (90)
T ss_dssp             EEEEEEESSTTSCCCEEEE-TT--------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             ceEEEEeCCCccccCeEec-CC--------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            444455444 349999984 21        899999999999999 9999999999999999999999999998653

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5e-14  Score=81.33  Aligned_cols=79  Identities=16%  Similarity=0.299  Sum_probs=64.1

Q ss_pred             cCCCcccEEEEEECCCCC--cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490           3 HLNPVTSEIVVVPKAKGE--ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus         3 ~~~~~~~~~~~i~~~~~~--~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      .+.|...+.+.+.+....  +|||++.. .......+++|..|.+++||+++| |++||.|++|||.++.++++.++..+
T Consensus        10 e~~~~~~~~v~l~k~~~~~~~~G~~v~~-~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~   87 (114)
T 2d8i_A           10 EICPKVTQSIHIEKSDTAADTYGFSLSS-VEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDF   87 (114)
T ss_dssp             CSSCCEEEEEEEECSCTTTCCCCCEEEE-EEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHH
T ss_pred             EeccCceEEEEEEeCCCCccccCEEEEe-cCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            455666778888876653  79999963 211122469999999999999999 99999999999999999999999998


Q ss_pred             HHh
Q psy3490          81 IKV   83 (88)
Q Consensus        81 lk~   83 (88)
                      ++.
T Consensus        88 l~~   90 (114)
T 2d8i_A           88 LSQ   90 (114)
T ss_dssp             HTS
T ss_pred             HhC
Confidence            875

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=78.39  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+ .+.+|||++.. .  ....+++|..+.++|||+++| |++||.|++|||.++.++++.++...++.+
T Consensus         9 ~r~v~l~k-~~~~~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   79 (106)
T 2eei_A            9 PRLCYLVK-EGGSYGFSLKT-V--QGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS   79 (106)
T ss_dssp             SEEEEEEC-CSSSCSCCEEC-C--SSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred             CEEEEEEE-CCCCCCEEEEe-c--cCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            36777776 45699999962 2  223468999999999999999 999999999999999999999999988754

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.49  E-value=5.3e-14  Score=79.44  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=56.2

Q ss_pred             EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +......+|||++.+ +.+ ...+++|..+.++|||+++| |++||.|++|||.++.++++.++...++...
T Consensus         9 v~l~~~~~~G~~l~g-g~~-~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   77 (103)
T 1wf7_A            9 VSLVGPAPWGFRLQG-GKD-FNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT   77 (103)
T ss_dssp             EEEESSSCCSCCEEE-ETT-TTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS
T ss_pred             EEEeCCCccCEEEec-ccc-CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            333345699999973 332 23358999999999999999 9999999999999999999999998887653

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=2.5e-13  Score=76.46  Aligned_cols=71  Identities=25%  Similarity=0.390  Sum_probs=59.3

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+++.+. ..+|||++.. .  ....+++|..+.++|||+++| |++||.|++|||.++.++++.++...++..
T Consensus         7 ~r~v~l~k~-~~g~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   77 (102)
T 2d90_A            7 GRVVVIKKG-SNGYGFYLRA-G--PEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG   77 (102)
T ss_dssp             SEEEEEECC-SSSSSCEEEE-C--SSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHS
T ss_pred             CEEEEEeeC-CCCccEEEEe-e--cCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            367777764 3599999963 2  123469999999999999999 999999999999999999999999998764

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.48  E-value=8.8e-13  Score=81.87  Aligned_cols=74  Identities=31%  Similarity=0.436  Sum_probs=61.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+..+.+|||++. ++... ..+++|..+.++|||++++.|++||.|++|||.++.+++|.++..+++...
T Consensus         9 ~~v~l~~~~~~~lG~~i~-~~~~~-~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   82 (200)
T 2qt5_A            9 TVVELMKKEGTTLGLTVS-GGIDK-DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVG   82 (200)
T ss_dssp             EEEEEECCTTCCCCEEEE-CCTTS-SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEeCCCCCCCEEEe-cccCC-CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            567777777779999997 33322 335899999999999999449999999999999999999999999987653

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.48  E-value=7.1e-14  Score=77.74  Aligned_cols=70  Identities=23%  Similarity=0.318  Sum_probs=58.5

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.++...+|||++.++. . ...+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++..
T Consensus         8 ~~~~~~~~~~lG~~l~~g~-~-~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   77 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGR-D-FHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS   77 (94)
T ss_dssp             EEEEECSSSCCSBCCEEET-T-TTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             EEEEecCCCCccEEEeccc-C-CCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4566555669999997322 2 23468999999999999998 999999999999999999999999999865

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.22  E-value=3.1e-15  Score=86.10  Aligned_cols=74  Identities=32%  Similarity=0.492  Sum_probs=60.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+..+.+|||++. ++.. ...+++|..+.++|||++++.|++||.|++|||.++.+.++.+++.+++.+.
T Consensus        29 ~~v~l~k~~~~glG~~l~-~g~~-~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~  102 (112)
T 2lob_A           29 RKVLLLKEDHEGLGISIT-GGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR  102 (112)
Confidence            556777776679999996 2322 2345899999999999993339999999999999999999999999997653

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.48  E-value=8.2e-14  Score=75.77  Aligned_cols=68  Identities=24%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+.. .+|||++.  +.    .+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++...
T Consensus         4 r~v~l~~~~-~g~G~~~~--~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   71 (83)
T 2kv8_A            4 RSVEVARGR-AGYGFTLS--GQ----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCS   71 (83)
T ss_dssp             EEEEECCCS-SCCSCBCC--CS----SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             EEEEEEeCC-CcccEEEE--cC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            556666543 58999884  21    248999999999999999 9999999999999999999999999997653

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.47  E-value=4.9e-13  Score=76.63  Aligned_cols=73  Identities=29%  Similarity=0.427  Sum_probs=60.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+....+|||++.++ . ....+++|..+.+++||+++| |++||.|++|||+++.++.+.++..+++...
T Consensus        17 ~~v~~~~~~~~~lG~~l~~~-~-~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~   89 (114)
T 1x5n_A           17 KKVFISLVGSRGLGCSISSG-P-IQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   89 (114)
T ss_dssp             EEEEECCCSSCCCCEEEEEC-C-SSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             EEEEEEEcCCCceeEEEeec-C-CCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            66777776666999999733 2 233469999999999999998 9999999999999999999888888887653

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.47  E-value=1.6e-13  Score=77.20  Aligned_cols=74  Identities=19%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             CCcccEEEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           5 NPVTSEIVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         5 ~~~~~~~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +++.++.+.+...++. +|||.+.  ..    .+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++.
T Consensus        10 ~~~~~~~~~v~l~~~~~g~G~~~~--~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~   82 (100)
T 1whd_A           10 DPENGEKLQITIRRGKDGFGFTIC--CD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS   82 (100)
T ss_dssp             SCCCCEEEEEEEECCSSSSSCBCC--CS----SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CccccceEEEEEECCCCeeeEEEe--CC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            4455555555554444 9999884  21    348999999999999999 99999999999999999999999999986


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ..
T Consensus        83 ~~   84 (100)
T 1whd_A           83 CP   84 (100)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.47  E-value=3.2e-13  Score=75.58  Aligned_cols=72  Identities=21%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             EEEECCCCCcccEEEEeCCCCCC-----CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSM-----LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~-----~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+ .+.+|||++........     ..+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..+
T Consensus         6 v~l~~-~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   82 (99)
T 3khf_A            6 IVIHS-SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSG   82 (99)
T ss_dssp             EEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             EEEEe-CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            44554 45699999963321111     1256899999999999999 9999999999999999999999999998553

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.46  E-value=6.6e-13  Score=76.57  Aligned_cols=67  Identities=15%  Similarity=0.054  Sum_probs=52.6

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+. ..+|||+|.++..     +.+|.++.+  ++..+ .|++||.|++|||.++.+++|+|++++||+++
T Consensus        14 ~~V~L~Kg-~~G~GFsI~~~~~-----g~~V~~I~~--~~~~a-GL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~   80 (113)
T 3soe_A           14 VTIPLIKG-PKGFGFAIADSPT-----GQKVKMILD--SQWCQ-GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP   80 (113)
T ss_dssp             EEEEEECB-TTBSSEEEEEETT-----EEEEEEESC--GGGST-TCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             EEEEEEEC-CCcccEEEeCCCC-----CcEEEEecC--hHHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            55666653 3499999963221     357999988  45554 59999999999999999999999999999753

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.46  E-value=1.6e-12  Score=74.20  Aligned_cols=72  Identities=32%  Similarity=0.385  Sum_probs=59.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+.+.+.+..+|||++....   ...+++|..+.++|||+++|.|++||.|++|||.++.+++++++..+++..
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~---~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~   74 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERV---SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI   74 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECS---SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHS
T ss_pred             EEEEEEcCCCCceeEEEEecC---CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            346666665669999996322   234699999999999999994499999999999999999999999999864

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.45  E-value=7.2e-13  Score=81.86  Aligned_cols=64  Identities=25%  Similarity=0.367  Sum_probs=54.6

Q ss_pred             CcccEEEEeCCC--C----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          20 EILGVVIVESGW--G----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        20 ~~lG~~i~~~~~--~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+|||+|.++..  +    ....+++|..+.+++||++ | |++||.|++|||.++.+++|.+++..++...
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   71 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ   71 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            589999985321  1    1245799999999999999 7 9999999999999999999999999998764

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.45  E-value=8.8e-13  Score=75.55  Aligned_cols=68  Identities=22%  Similarity=0.227  Sum_probs=56.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+ ...+|||.+. +.     .+++|..+.+++||+++| |++||.|++|||.++.+++++++.++++...
T Consensus        25 r~v~l~k-~~~~~G~~l~-~~-----~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~   92 (109)
T 2vsv_A           25 RSIRFTA-EEGDLGFTLR-GN-----APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFG   92 (109)
T ss_dssp             EEEEECC-GGGCCCEEEE-SS-----SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             EEEEEEe-CCCceeEEEe-CC-----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5566665 2359999985 21     237999999999999998 9999999999999999999999999998654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.45  E-value=9.7e-13  Score=75.48  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+.+.+.....|||.+.. .  ....+++|..+.++|||+++| |++||.|++|||.++.+.++.++...++..
T Consensus        15 ~~~~l~~~~~~~~G~~l~~-~--~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   85 (114)
T 2edz_A           15 RECKLSKQEGQNYGFFLRI-E--KDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS   85 (114)
T ss_dssp             EEEEEECCTTCCCSCEEEC-C--TTCCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCcccEEEEE-e--cCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            5566777767799999852 2  223468999999999999999 999999999999999999999999999864

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.44  E-value=1.2e-12  Score=77.74  Aligned_cols=73  Identities=23%  Similarity=0.296  Sum_probs=58.0

Q ss_pred             EEEEEECCCC---CcccEEEEeCCCC----------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHH
Q psy3490          10 EIVVVPKAKG---EILGVVIVESGWG----------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLST   76 (88)
Q Consensus        10 ~~~~i~~~~~---~~lG~~i~~~~~~----------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~   76 (88)
                      +.+.+.+...   .+|||++.++...          ....+++|..|.++|||+++| |++||.|++|||.++.++++.+
T Consensus        25 ~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~  103 (139)
T 2vz5_A           25 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQ  103 (139)
T ss_dssp             EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHH
Confidence            4455554321   2899999743221          123579999999999999999 9999999999999999999999


Q ss_pred             HHHHHHh
Q psy3490          77 CQTYIKV   83 (88)
Q Consensus        77 ~~~~lk~   83 (88)
                      +..+++.
T Consensus       104 ~~~~l~~  110 (139)
T 2vz5_A          104 ARKRLTK  110 (139)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9999976

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.44  E-value=3.2e-12  Score=74.47  Aligned_cols=71  Identities=23%  Similarity=0.344  Sum_probs=59.3

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+++.+. ..+|||.+....   ...+++|..+.++|||+++| |++||.|++|||.++.++++.++..+++..
T Consensus        10 ~r~v~l~~~-~~g~G~~l~~~~---~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   80 (128)
T 2kjd_A           10 PRLCTMKKG-PSGYGFNLHSDK---SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG   80 (128)
T ss_dssp             CEEEEEECC-SSSCCEEEEECS---SSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             cEEEEEecC-CCcccEEEEecC---CCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            366767754 358999996322   23369999999999999999 999999999999999999999999999865

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.44  E-value=1.6e-12  Score=80.58  Aligned_cols=75  Identities=21%  Similarity=0.411  Sum_probs=63.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .++.+.+....+|||++.++...  ....+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++..
T Consensus         8 ~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            8 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             EEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             EEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            55777777667999999854221  1245689999999999999998999999999999999999999999999865

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.43  E-value=1.4e-12  Score=72.37  Aligned_cols=66  Identities=29%  Similarity=0.465  Sum_probs=55.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +.+.+.+ ...+|||.+.  +    ..+++|..+.+++||+++| |++||.|++|||+++.++++.+++..++.
T Consensus        10 r~v~l~~-~~~~~G~~l~--~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~   75 (93)
T 2dls_A           10 RCVIIQK-DQHGFGFTVS--G----DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS   75 (93)
T ss_dssp             EEEEEEC-SSSSCCEEEE--C----SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS
T ss_pred             EEEEEEe-CCCceeEEEe--C----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC
Confidence            5666664 3459999995  2    1358999999999999999 99999999999999999999998888874

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.43  E-value=1.4e-12  Score=94.06  Aligned_cols=74  Identities=28%  Similarity=0.419  Sum_probs=61.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+.. .+|||+|. ++.+.    ...+++|..+.+++||+++|+|+.||+|++|||.++.+++|.+++.+++.++
T Consensus        61 ~~v~l~k~~-~glGf~i~-gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g  138 (721)
T 2xkx_A           61 EEITLERGN-SGLGFSIA-GGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG  138 (721)
T ss_pred             EEEEEEeCC-CCCCEEEe-CCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccc
Confidence            445566544 49999998 44433    2457999999999999999999999999999999999999999999998654

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=4.4e-12  Score=74.03  Aligned_cols=73  Identities=27%  Similarity=0.410  Sum_probs=59.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+.....|||.+.+ +. ....+++|..+.+++||+++| |++||.|++|||.++.++++.+++..++...
T Consensus        22 ~~v~v~~~~~~~lG~~~~~-~~-~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   94 (128)
T 1uf1_A           22 KKVNLVLGDGRSLGLTIRG-GA-EYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR   94 (128)
T ss_dssp             EEEEEECCSSCCCCEEEEC-CT-TTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCccCEEEEC-cc-cCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            4566666555689999973 22 223468999999999999999 9999999999999999999999998887643

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.42  E-value=3.1e-12  Score=78.60  Aligned_cols=66  Identities=27%  Similarity=0.328  Sum_probs=55.6

Q ss_pred             CcccEEEEeCCCCC---CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          20 EILGVVIVESGWGS---MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        20 ~~lG~~i~~~~~~~---~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+|||++.++....   ...+++|..+.++|+|+++|+|++||+|++|||+++.++++.+++.+++.+.
T Consensus       111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  179 (196)
T 3gsl_A          111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  179 (196)
T ss_dssp             TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC
T ss_pred             CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            38999997432211   1346999999999999999999999999999999999999999999998753

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=6.8e-13  Score=75.74  Aligned_cols=72  Identities=26%  Similarity=0.355  Sum_probs=59.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+. ..+|||++.+ +.  ...+++|..+.+++||+++|+|++||.|++|||+++.++++.++..+++...
T Consensus        17 ~~v~l~k~-~~glG~~l~~-~~--~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~   88 (113)
T 1um7_A           17 RKIILHKG-STGLGFNIVG-GE--DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG   88 (113)
T ss_dssp             EEEEEECC-SSCSSBCCBC-CS--TTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred             EEEEEEEC-CCcccEEEEe-cc--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            55667653 3699999962 22  1346899999999999999889999999999999999999999999888653

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.41  E-value=3.5e-13  Score=79.05  Aligned_cols=61  Identities=30%  Similarity=0.404  Sum_probs=53.5

Q ss_pred             CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        19 ~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+|||++.+     ...+++|..+.+++||+++|+|++||.|++|||.++.+.++++++.+++..
T Consensus        37 ~~glG~~i~~-----~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~   97 (126)
T 1wif_A           37 NLGLGLVVIQ-----NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI   97 (126)
T ss_dssp             TTCCCCCEEE-----ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred             CceEeEEEEc-----CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            3499999863     123589999999999999999999999999999999999999999999863

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.40  E-value=7.3e-13  Score=77.23  Aligned_cols=77  Identities=30%  Similarity=0.336  Sum_probs=62.9

Q ss_pred             CCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         5 ~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+...+.+.+.+....+|||++....   ...+++|..+.++|||+++|.|++||.|++|||.++.+++++++..+++..
T Consensus         5 ~~~~~~~v~l~~~~~~glG~~~~~~~---~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (127)
T 1b8q_A            5 IEPNVISVRLFKRKVGGLGFLVKERV---SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI   81 (127)
T ss_dssp             CCCCSEEEEEECTTTSCCSCCEEECT---TSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSC
T ss_pred             cCCceEEEEEEeCCCCcEeEEEEecC---CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34445777787766679999996322   234699999999999999994499999999999999999999999999864

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.39  E-value=5.8e-12  Score=73.45  Aligned_cols=62  Identities=24%  Similarity=0.400  Sum_probs=53.7

Q ss_pred             CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .++.+|||.+.++. .   .+++|..|.++|||+++| |++||.|++|||.++.+++++++...++.
T Consensus        36 ~~~~~lG~~l~~~~-~---~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   97 (124)
T 3tsv_A           36 RKGDSVGLRLAGGN-D---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD   97 (124)
T ss_dssp             ECSSCCCEEEEECT-T---SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCCceeEEEecCC-C---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34579999996322 1   459999999999999999 99999999999999999999999998874

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.39  E-value=2.8e-12  Score=70.33  Aligned_cols=67  Identities=19%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +.+++.+. ..+|||++....   ...+++|..+ ++|||+ +| |++||.|++|||.++.++++.++..+++.
T Consensus         5 ~~v~l~k~-~~g~G~~~~~~~---~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~   71 (88)
T 3bpu_A            5 ITVHIVKG-PMGFGFTIADSP---GGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVE   71 (88)
T ss_dssp             EEEEEECB-TTBSSCEEEECT---TSSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             EEEEEEcC-CCceeEEEEecC---CCCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            45556653 359999996321   1235888886 999999 76 99999999999999999999999999984

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.38  E-value=4.4e-12  Score=78.82  Aligned_cols=67  Identities=28%  Similarity=0.387  Sum_probs=56.2

Q ss_pred             EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+....+|||++...     ..+++|..+.++|+|+++|+|++||+|++|||+++.++++.+++.+++.+.
T Consensus       119 l~~~~~~~lG~~~~~~-----~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~  185 (206)
T 3r0h_A          119 LMKKAGKELGLSLSPN-----EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN  185 (206)
T ss_dssp             EECCTTCCCCEEEEEC-----SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             EecCCCCccCeEEEcC-----CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3343445899999621     235899999999999999889999999999999999999999999998754

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=6.4e-12  Score=70.21  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=51.4

Q ss_pred             EEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          11 IVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        11 ~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++...++ .+|||++.+..     .+++|..+.++  |+++| |++||.|++|||.++.+++|++++++|+..
T Consensus        11 ~~~v~l~~~~~g~G~~i~~~~-----~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   77 (96)
T 1ujv_A           11 LMTLTIVKGAQGFGFTIADSP-----TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDC   77 (96)
T ss_dssp             CEEEEEECCSSSSSEEEEEET-----TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCceeEEEEcCC-----CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            333333334 49999995211     25899999983  66666 999999999999999999999999999874

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.37  E-value=1.3e-11  Score=67.78  Aligned_cols=66  Identities=18%  Similarity=0.285  Sum_probs=53.9

Q ss_pred             EEEECCCCC--cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          12 VVVPKAKGE--ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        12 ~~i~~~~~~--~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +.+.+..+.  .|||++..     ...+++|..+.++|||+++| |++||.|++|||.++.+.++.++..+++.
T Consensus         7 ~~~~~~~~~~~~lG~~~~~-----~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2eaq_A            7 ISINQTPGKSLDFGFTIKW-----DIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAK   74 (90)
T ss_dssp             EEEECCTTCSSCCSEEEEE-----ETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred             EEEEecCCCCCcccEEEEe-----cCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            445554444  79999852     12358999999999999998 99999999999999988899999888864

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.2e-13  Score=77.60  Aligned_cols=73  Identities=25%  Similarity=0.364  Sum_probs=59.0

Q ss_pred             EEEEEECCCCCcccEEEEeCC----------------------CC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEE
Q psy3490          10 EIVVVPKAKGEILGVVIVESG----------------------WG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIA   63 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~----------------------~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~   63 (88)
                      +.+++.+.. .+|||++.+..                      ..    ....+++|..|.+++||+++| |++||.|++
T Consensus        10 r~v~l~r~~-~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~   87 (126)
T 2yuy_A           10 KTVTLKRTS-QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIK   87 (126)
T ss_dssp             CCEEEECCS-SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCCCE
T ss_pred             EEEEEEECC-CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEEEE
Confidence            667787643 58999996310                      00    012458999999999999999 999999999


Q ss_pred             ECCEECCCCCHHHHHHHHHhC
Q psy3490          64 VNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        64 Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      |||.++.++++.+++.+|+..
T Consensus        88 ing~~v~~~~~~~~~~~l~~~  108 (126)
T 2yuy_A           88 VNGESVIGKTYSQVIALIQNS  108 (126)
T ss_dssp             ETTEECSSCCHHHHHHHHHTC
T ss_pred             ECCEECCCCCHHHHHHHHHcC
Confidence            999999999999999999865

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.36  E-value=1.9e-11  Score=65.62  Aligned_cols=64  Identities=23%  Similarity=0.433  Sum_probs=54.4

Q ss_pred             EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.......|||.+.        .+++|..+.++|||+++|.|++||.|++|||.++.++++.++..+++...
T Consensus         7 ~~~~~~~~~g~~~~--------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   70 (81)
T 2rcz_A            7 VKSRKNEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK   70 (81)
T ss_dssp             ECCSTTCCCCEEEE--------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             EECCCCCCCCEEEe--------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            34444558999873        24899999999999999889999999999999999999999999998643

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.35  E-value=7.3e-12  Score=85.11  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=58.6

Q ss_pred             CCcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           5 NPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         5 ~~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..+..+.+.+.+  +.+|||++.++.    ..+++|..|.+||||+++| |++||.|++|||.++.++++++++.+++.
T Consensus         6 ~~~~~~~v~~~k--~~~lG~~i~gg~----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~   77 (391)
T 3tsz_A            6 LRPSMKLVKFRK--GDSVGLRLAGGN----DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD   77 (391)
T ss_dssp             ---CEEEEEEEC--CSSCCEEEEEET----TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEeec--CCceeEEEEecC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            344446666665  457999997322    2469999999999999999 99999999999999999999999999985

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.35  E-value=2.3e-13  Score=76.83  Aligned_cols=65  Identities=23%  Similarity=0.309  Sum_probs=54.6

Q ss_pred             CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ....+|||++.++. + ...+++|..+.+++||+++| |++||.|++|||.++.++++.++..+++..
T Consensus        12 ~~~~~lG~~l~~g~-~-~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   76 (103)
T 1v5l_A           12 PGPAPWGFRLSGGI-D-FNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA   76 (103)
T ss_dssp             ESSSCCSBCCEEET-T-TTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             cCCCCcCEEEeccc-c-CCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34569999997322 1 22358999999999999998 999999999999999999999999999864

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.35  E-value=2.7e-11  Score=66.65  Aligned_cols=59  Identities=22%  Similarity=0.438  Sum_probs=52.1

Q ss_pred             CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        19 ~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...|||.+.        .+++|..+.++|||+++|+|++||.|++|||.++.++++.++..+++...
T Consensus        14 ~~~~g~~~~--------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   72 (92)
T 3cyy_A           14 NEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK   72 (92)
T ss_dssp             TSCCCEEEE--------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCCCCEEEe--------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            348998873        34899999999999999889999999999999999999999999998643

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=2.7e-11  Score=69.62  Aligned_cols=69  Identities=26%  Similarity=0.389  Sum_probs=56.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+. ..+|||++..+.    ..+++|..+.+++||+++| |++||.|++|||+++.++++.+++..++..
T Consensus        21 ~~v~l~~~-~~~lG~~~~~~~----~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   89 (117)
T 1uit_A           21 RHVKVQKG-SEPLGISIVSGE----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ   89 (117)
T ss_dssp             EEEEEECS-SCCCCEEEEECT----TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC
T ss_pred             EEEEEEeC-CCCccEEEEccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45666654 369999996321    2369999999999999999 999999999999999999999888766543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.34  E-value=1.2e-11  Score=85.71  Aligned_cols=67  Identities=24%  Similarity=0.397  Sum_probs=58.1

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +.+.+.+  +.+|||++.++. .   .+++|.+|.+||||+++| |++||.|++|||.++.++++++++.+|+.
T Consensus         3 r~V~l~k--~~~lG~~i~gg~-~---~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~   69 (468)
T 3shw_A            3 KLVKFRK--GDSVGLRLAGGN-D---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD   69 (468)
T ss_dssp             EEEEEEC--CSSCCEEEEEET-T---TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEec--CCccceEEEccC-c---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4566665  579999997332 2   469999999999999999 99999999999999999999999999987

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=72.90  Aligned_cols=67  Identities=19%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             EEEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+++.+.... +|||.+.  +    ..+++|..+.+++||+ +| |++||.|++|||.++.++++.+++.+++..
T Consensus        10 ~~v~l~~~~~~~~~G~~l~--~----~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~   77 (96)
T 2edv_A           10 HTVKIDKDTLLQDYGFHIS--E----SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREA   77 (96)
T ss_dssp             EEEEECCCSSSCSCSBCCC--S----SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHC
T ss_pred             EEEEEEECCCCCcccEEEe--c----CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            55667765544 8999984  2    2358999999999995 55 999999999999999999999999999864

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.33  E-value=2.9e-11  Score=73.24  Aligned_cols=70  Identities=19%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.+.....|||++...     ..+++|..+.++|||+++| |+.||.|++|||.++.+++++.+..+++..
T Consensus         5 ~r~v~l~k~~~~~lG~~~~~~-----~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   74 (166)
T 1w9e_A            5 PREVILCKDQDGKIGLRLKSI-----DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQA   74 (166)
T ss_dssp             CEEEEEECCTTSCCSEEEEEE-----TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CEEEEEEeCCCCcEeEEEEeC-----CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            367888887777999999632     2469999999999999998 999999999999999999887777777654

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.32  E-value=2e-11  Score=69.02  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             CCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          17 AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        17 ~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ....++||.+..     ...+.+|..|.++|||+++| |++||.|++|||.++...+++++...++.
T Consensus        25 ~~~~g~G~~l~~-----~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~   85 (101)
T 3qik_A           25 PQEEDYGFDIEE-----KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQ   85 (101)
T ss_dssp             CCSSSSSEEEEE-----ETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHH
T ss_pred             eCCCcccEEEEc-----cCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHH
Confidence            345699999952     12247899999999999999 99999999999999988899999999976

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=1.7e-11  Score=71.25  Aligned_cols=73  Identities=21%  Similarity=0.308  Sum_probs=55.7

Q ss_pred             EEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.+... .+|||.+..........+++|..|.+++||+++|+|++||.|++|||.++.  ++.++..+|+..
T Consensus        21 ~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~   94 (124)
T 1wh1_A           21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSE   94 (124)
T ss_dssp             CCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCS
T ss_pred             EEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence            4444444333 389999963222112357999999999999999889999999999999997  588999998763

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=3.1e-12  Score=73.40  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=56.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+ .+.+|||.+. +.     .+++|..+.+++||+++| |+.||.|++|||.++.+++++++..+++...
T Consensus        17 r~v~l~~-~~~~~G~~l~-~~-----~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~   84 (111)
T 1vae_A           17 RGIHFTV-EEGDLGFTLR-GN-----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG   84 (111)
T ss_dssp             CCCCEEC-CSSCCSCCEE-SS-----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTT
T ss_pred             eEEEEEc-CCCcccEEEe-CC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4455665 3469999985 22     237899999999999998 9999999999999999999999999998654

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.25  E-value=1.3e-10  Score=72.01  Aligned_cols=66  Identities=29%  Similarity=0.510  Sum_probs=55.4

Q ss_pred             CCcccEEEEeCCCCC-C-CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          19 GEILGVVIVESGWGS-M-LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        19 ~~~lG~~i~~~~~~~-~-~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+|||.+.++.... . ..+++|..+.++++|+++|+|++||.|++|||.++.+++++++..+++..
T Consensus       116 ~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~  183 (200)
T 2qt5_A          116 GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC  183 (200)
T ss_dssp             TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            458999997432211 1 34699999999999999999999999999999999999999999999873

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-11  Score=76.80  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=57.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+++.+. ..+|||.+.  +. ....+++|..|.+++||+++| |+.||.|++|||.++.++++.++..+++..
T Consensus        11 r~v~l~k~-~~glG~~l~--~~-~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~   80 (216)
T 2krg_A           11 RLCTMKKG-PSGYGFNLH--SD-KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG   80 (216)
T ss_dssp             EEEEEECC-SSSSCEEEC--CC-SSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHH
T ss_pred             EEEEEEeC-CCCceEEEE--ec-CCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            55666653 358999995  22 223468999999999999999 999999999999999999999999998753

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.23  E-value=1e-10  Score=72.45  Aligned_cols=74  Identities=22%  Similarity=0.369  Sum_probs=58.4

Q ss_pred             EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+.+.....|||.+..........+++|..+.++|||+++|+|++||.|++|||.++.+++++++.++++..
T Consensus       110 ~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~  183 (196)
T 1p1d_A          110 HVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC  183 (196)
T ss_dssp             EEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC
T ss_pred             EEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34444333448999996322211234689999999999999998999999999999999999999999999865

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.18  E-value=2.1e-10  Score=82.80  Aligned_cols=72  Identities=29%  Similarity=0.362  Sum_probs=59.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+.+.+. ..+|||++.+ +.  ...+++|..|.++|+|+++|+|++||.|++|||.++.++++++++.+|+.+.
T Consensus       309 ~~v~l~~~-~~~lG~~i~~-~~--~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~  380 (721)
T 2xkx_A          309 RRIVIHRG-STGLGFNIVG-GE--DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG  380 (721)
T ss_pred             EEEEEEEC-CCCccEEEec-cC--CCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence            44555543 3589999962 21  1346999999999999999999999999999999999999999999998754

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=1.5e-10  Score=66.92  Aligned_cols=74  Identities=18%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCC-CCCCCcEEEEEECC--CChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW-GSMLPTVVIANLAP--AGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~--g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+.+.......+||.+.-... .....+++|..+.+  ++||+++| |++||.|++|||.++.+++|.++...++..
T Consensus        17 ~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~   93 (118)
T 2yub_A           17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT   93 (118)
T ss_dssp             EEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC
T ss_pred             EEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC
Confidence            3333433333445555531111 12345799999999  99999998 999999999999999999999999998764

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.82  E-value=8.7e-08  Score=57.76  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+.....|||.+.        .+ +|..+.+++||+++| |++||.|++|||.++.+..+.++...++...
T Consensus        90 ~~v~l~~~~~~~lG~~~~--------~g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g  155 (166)
T 1w9e_A           90 RTITMHKDSTGHVGFIFK--------NG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG  155 (166)
T ss_dssp             EEEEEECCTTSCCSEEEE--------TT-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             EEEEEecCCCCcEeEEEe--------CC-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCC
Confidence            445555433457888874        12 899999999999998 9999999999999999999998887776543

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.77  E-value=7.2e-10  Score=75.19  Aligned_cols=55  Identities=27%  Similarity=0.424  Sum_probs=0.0

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +|||++.+         .+|..+.++|+|+++| |++||+|++|||.++.+.+|++++.+++++.
T Consensus       309 ~lG~~i~~---------g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~  363 (388)
T 3suz_A          309 QLGFSVQN---------GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSV  363 (388)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ccceEEec---------CEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            67777631         2889999999999999 9999999999999999999999999998754

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.72  E-value=6.2e-08  Score=65.54  Aligned_cols=60  Identities=28%  Similarity=0.473  Sum_probs=50.4

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++|+.+....  ....+++|..+.++|||+++| |++||.|++|||.++.+++.+++..+++.
T Consensus        86 giG~~~~~~~--~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~  145 (388)
T 1fc6_A           86 GVGLEITYDG--GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQG  145 (388)
T ss_dssp             BCSEEEEECT--TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCB
T ss_pred             EEEEEEEEee--cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            7899885210  112358999999999999998 99999999999999999999999988874

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.71  E-value=8.4e-08  Score=54.47  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=40.2

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +..+....++.
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~   79 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT   79 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC
Confidence            469999999999999999 9999999999999997  56777777764

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.63  E-value=1.7e-07  Score=52.27  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          35 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        35 ~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..+++|..+.++|||+. | |++||.|++|||.++.  +.++....+..
T Consensus         6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~--~~~dl~~~l~~   50 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFK--SSQEFIDYIHS   50 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCS--SHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            34699999999999995 6 9999999999999997  55677777764

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.63  E-value=1.6e-07  Score=52.08  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             EEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          39 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        39 ~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +|..+.++|||+++| |+.||.|++|||..+.  +.+++...+..
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~   46 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVD   46 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHH
Confidence            788999999999998 9999999999999997  56777777754

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.58  E-value=3e-07  Score=52.08  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=38.6

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +..+....++
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~   78 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVL   78 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHH
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHh
Confidence            469999999999999998 9999999999999997  4567766664

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.56  E-value=8.6e-08  Score=53.04  Aligned_cols=45  Identities=24%  Similarity=0.408  Sum_probs=38.7

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++|..+.++|||++ | |++||.|++|||.++.  +..+....++..
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~--~~~~l~~~l~~~   49 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPIN--TSEQIVSYVREK   49 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCC--CHHHHHHHHHHS
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence            3589999999999998 7 9999999999999997  457777777654

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.56  E-value=1.8e-08  Score=55.62  Aligned_cols=44  Identities=18%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++|..+.++|||++ | |++||.|++|||.++.  +..++...++..
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~--~~~~l~~~l~~~   45 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQ--SAEKLIDYISSK   45 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCS--SHHHHHHHHSSC
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECC--CHHHHHHHHHcC
Confidence            467888999999998 7 9999999999999997  467888887654

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.54  E-value=1.6e-07  Score=51.22  Aligned_cols=43  Identities=33%  Similarity=0.536  Sum_probs=37.8

Q ss_pred             EEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        38 i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ++|..+.++|||+++| |+.||.|++|||.++.  +..++...++.
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~   48 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRD   48 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHH
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhc
Confidence            5788899999999988 9999999999999997  56788777765

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.54  E-value=3.6e-07  Score=53.55  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=38.5

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++|..+.++|||+ +| |++||.|++|||.++.  +..+....++..
T Consensus        57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~--~~~~l~~~l~~~  101 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIA--SSTDLQSALYNH  101 (134)
T ss_dssp             SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECC--CHHHHHHHHHHS
T ss_pred             CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcC--CHHHHHHHHHhC
Confidence            468999999999999 88 9999999999999997  456777766643

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.51  E-value=3.8e-07  Score=56.97  Aligned_cols=38  Identities=21%  Similarity=0.195  Sum_probs=34.6

Q ss_pred             CcEEEEEECCCChhhhhCCCCCC-CEEEEECCEECCCCCH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIG-DQIIAVNGVSLVGLPL   74 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~g-d~i~~Vng~~~~~~~~   74 (88)
                      .+++|..+.++|||+++| |+.| |.|++|||.++.+...
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~   54 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDND   54 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSS
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHH
Confidence            469999999999999999 9999 9999999999987653

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.51  E-value=2.7e-07  Score=50.21  Aligned_cols=43  Identities=21%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ++.|..+.|+|+|+++| |++||.|++|||.++.  +..+....++
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~--~~~d~~~~~~   62 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQ   62 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHH
Confidence            56788888888999998 9999999999999997  4566666554

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.39  E-value=1.9e-06  Score=56.82  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=44.9

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+|+.+.  .. ....+++|..+.+++||+++| |+.||.|++|||.++.  +..+....++.
T Consensus       230 ~lGi~~~--~~-~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~l~~~l~~  286 (324)
T 1y8t_A          230 SLGVQVT--ND-KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRS  286 (324)
T ss_dssp             ECCEEEE--SC-SSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECC--SHHHHHHHHHT
T ss_pred             ccceEee--ec-cCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            6777774  11 123468999999999999998 9999999999999997  45677766654

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.36  E-value=1e-06  Score=60.18  Aligned_cols=51  Identities=18%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             cccEEEEeCCCCCCCC-cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCC
Q psy3490          21 ILGVVIVESGWGSMLP-TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP   73 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~-~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~   73 (88)
                      |+||.+.... ..... .++|..+.++|||+++| |++||.|++|||.++.+..
T Consensus        75 G~~~~l~~~~-~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~  126 (403)
T 3k50_A           75 GFDYTLYKVL-DNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV  126 (403)
T ss_dssp             SEEEEEEECT-TCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT
T ss_pred             ceEEEEEEcC-CCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh
Confidence            7777775211 11111 37899999999999999 9999999999999998774

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.34  E-value=3e-06  Score=49.23  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=37.7

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.+++||+++  |++||.|++|||.++.  +..+....++.
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~--~~~dl~~~l~~   68 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTS--NLTTYSAALKT   68 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECS--SHHHHHHHHTT
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            36899999999999987  9999999999999997  45677766653

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.31  E-value=1.9e-06  Score=57.56  Aligned_cols=45  Identities=22%  Similarity=0.455  Sum_probs=40.2

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +..+....++.
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~  307 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIAT  307 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHT
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            468999999999999999 9999999999999997  66777777764

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.29  E-value=1.4e-06  Score=48.98  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=33.9

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ++.|....|+|+|+++| |++||.|++|||.++.+..  +...+++
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~   80 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQ   80 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHH
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHH
Confidence            45677788888889998 9999999999999998653  3334443

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.29  E-value=2.4e-06  Score=58.65  Aligned_cols=46  Identities=22%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+++|..+.++|||+++| |++||.|++|||+++.  +.++..+.++..
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~  408 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAK  408 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence            368999999999999998 9999999999999997  678888888764

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.28  E-value=2.4e-06  Score=56.28  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=39.9

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||+++.  +..+....++.
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~--~~~~l~~~l~~  288 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAE  288 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECC--CHHHHHHHHHT
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            469999999999999998 9999999999999997  46777777764

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.27  E-value=2.9e-06  Score=56.17  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=40.0

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||+++.  +..+....++.
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~l~~~l~~  300 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT  300 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHhC
Confidence            479999999999999999 9999999999999997  56777777764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.24  E-value=3.8e-06  Score=59.83  Aligned_cols=52  Identities=21%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHH
Q psy3490          20 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC   77 (88)
Q Consensus        20 ~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~   77 (88)
                      ..+|+.+...     ..+++|..|.++|||+++| |++||.|++|||.++......++
T Consensus       485 ~~lG~~~~~~-----~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~~~l~~~  536 (597)
T 4fgm_A          485 VNFGAKYKAS-----PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRI  536 (597)
T ss_dssp             CCCSEEEEEE-----TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCTTTHHHH
T ss_pred             cccceEEecc-----CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCHHHHHHH
Confidence            3788887421     1258999999999999999 99999999999999954444443

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.23  E-value=3.4e-06  Score=58.23  Aligned_cols=45  Identities=24%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++|..+.++|||+++| |++||.|++|||.++.  +.++..+.++..
T Consensus       387 Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~  431 (451)
T 3pv2_A          387 GVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEK  431 (451)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSS
T ss_pred             ceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcC
Confidence            68999999999999999 9999999999999997  568888888753

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.20  E-value=2.2e-06  Score=53.50  Aligned_cols=59  Identities=22%  Similarity=0.244  Sum_probs=43.1

Q ss_pred             cccEEEEeCCCC-CCCCcEEEEEECCCChhhhhCCCCC-CCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          21 ILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        21 ~lG~~i~~~~~~-~~~~~i~I~~v~~g~~a~~~g~l~~-gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+|+.+..-... ....+++|..+.++|||+++| |++ ||.|++|||. +.  +.++....++.
T Consensus        96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~--~~~~l~~~l~~  156 (209)
T 3rle_A           96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MN--ESEDLFSLIET  156 (209)
T ss_dssp             SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CC--SSSCHHHHHHH
T ss_pred             ccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eC--CHHHHHHHHHh
Confidence            678887521111 122579999999999999999 999 9999999997 54  44555555554

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.17  E-value=6.8e-06  Score=56.69  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=39.0

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |+.||.|++|||.++.+  ..+....+..
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~--~~~l~~~l~~  326 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQ--ATQVKTTISL  326 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHT
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            579999999999999999 99999999999999974  5666666653

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.15  E-value=6.7e-06  Score=56.43  Aligned_cols=44  Identities=23%  Similarity=0.465  Sum_probs=37.8

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.++|||+++| |+.||.|++|||.++.+  ..+....+.
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~--~~~l~~~l~  306 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIA  306 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHH
Confidence            468999999999999999 99999999999999984  455555554

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.99  E-value=8e-06  Score=54.48  Aligned_cols=45  Identities=29%  Similarity=0.471  Sum_probs=39.1

Q ss_pred             CcEEEEEECCCChhhhhCCCCC-----------CCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNI-----------GDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~-----------gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |+.           ||.|++|||.++.+.  ++....+..
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~  306 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQ  306 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTT
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHh
Confidence            479999999999999999 998           999999999999744  677777743

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.83  E-value=2.4e-06  Score=56.65  Aligned_cols=44  Identities=32%  Similarity=0.432  Sum_probs=0.0

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +..+....++
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~  297 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIK  297 (332)
T ss_dssp             -----------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECC--CHHHHHHHHh
Confidence            368999999999999998 9999999999999996  3445555544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.72  E-value=8.6e-05  Score=54.94  Aligned_cols=56  Identities=11%  Similarity=0.005  Sum_probs=45.0

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCC--------ChhhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPA--------GAAARCGQ-LNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g--------~~a~~~g~-l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++|+.+..     ...+++|..+.++        |||+++|. |+ ||.|++|||.++.++.  ++..+++..
T Consensus       738 g~G~~~~~-----~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~  802 (1045)
T 1k32_A          738 RIACDFKL-----DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEK  802 (1045)
T ss_dssp             BCSEEEEE-----ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTT
T ss_pred             eecEEEEE-----eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCC
Confidence            88888742     1235899999998        99999883 88 9999999999998775  677777753

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.70  E-value=5.1e-06  Score=57.29  Aligned_cols=45  Identities=27%  Similarity=0.393  Sum_probs=0.0

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  ++++..++++.
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~  427 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDS  427 (448)
T ss_dssp             ------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHc
Confidence            358999999999999999 9999999999999997  46677777664

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.52  E-value=2e-05  Score=54.34  Aligned_cols=44  Identities=20%  Similarity=0.470  Sum_probs=37.9

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..|.++|||+++| |+.||.|++|||.++.+.  .+....+.
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~  329 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVG  329 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTT
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence            378999999999999988 999999999999999865  56666654

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.38  E-value=0.00061  Score=48.16  Aligned_cols=48  Identities=10%  Similarity=0.188  Sum_probs=42.4

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      .+++|+.|.++++|...+ ++.||.|++|||+++.  +..+..+++++++.
T Consensus       415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~  462 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIR--NIHHLAHLIDMCKD  462 (539)
T ss_dssp             CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECC--SHHHHHHHHHTCCS
T ss_pred             eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcC--CHHHHHHHHHHcCC
Confidence            368999999999999988 9999999999999997  67788888887753

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.19  E-value=0.00059  Score=48.21  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCC
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG   71 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~   71 (88)
                      .+++|..|.++|||++ + |+.||.|++|||..+..
T Consensus       277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~  310 (539)
T 4fln_A          277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGC  310 (539)
T ss_dssp             BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBS
T ss_pred             CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCc
Confidence            4799999999999986 4 99999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-18
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	3e-12
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-11
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	3e-11
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-11
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	2e-10
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-10
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-10
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-10
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	6e-10
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	6e-10
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-09
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-09
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-09
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-09
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-09
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	4e-09
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	4e-09
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	8e-09
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-08
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-08
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-08
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-08
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	7e-08
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-07
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	4e-07
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-07
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-06
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	1e-06
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-06
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-06
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-06
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	4e-06
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	6e-06
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	8e-06
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	8e-06
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	1e-05
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-05
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-05
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-05
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-05
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	3e-05
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	5e-05
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	6e-05
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	7e-05
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-04
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-04
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-04
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-04
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-04
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	4e-04
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-04
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	0.003

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 6e-18
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K KGEILGVVIVESGWGS+LPTV+IAN+   G A + G+LNIGDQI+++NG SLVG
Sbjct: 2  VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 61

Query: 72 LPLSTCQTYIK 82
          LPLSTCQ+ IK
Sbjct: 62 LPLSTCQSIIK 72

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (132), Expect = 3e-12
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 9  SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
              V+   K   LG+ I+     +  P V I  + P G   + G+L  GDQ++++N  S
Sbjct: 7  PAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 66

Query: 69 LVGLPLSTCQTYIK 82
          ++G+     ++ I 
Sbjct: 67 MIGVSFEEAKSIIT 80

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (129), Expect = 1e-11
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          ++ ++   K   L + +   G  S +  VV++ +   GAA R G +  GD+I+A+NG  +
Sbjct: 18 DVRLLRIKKEGSLDLALE-GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76

Query: 70 VGLPLSTCQTYIK 82
              L+  +  ++
Sbjct: 77 TDYTLAEAEAALQ 89

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (125), Expect = 3e-11
 Identities = 16/71 (22%), Positives = 32/71 (45%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V +PK     LG+ I           +VI+++     A R G L +GD+++A++ + L  
Sbjct: 14 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 73

Query: 72 LPLSTCQTYIK 82
            +      ++
Sbjct: 74 CSMEDAVQILQ 84

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 3e-11
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 9  SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          S  +V  K     LG+ I   G  +  P   I  +   G+A  CGQL +G  I+ VNG++
Sbjct: 6  SGTLVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64

Query: 69 LVGLPLSTCQTYIK 82
          L G         I 
Sbjct: 65 LRGKEHREAARIIA 78

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 2e-10
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
           + ++ K +G  LG  +   G       + +  + P G A++ G +  G++++++NG SL
Sbjct: 10 HVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 68

Query: 70 VGLPLSTCQTYIK 82
           G         ++
Sbjct: 69 KGTTHHDALAILR 81

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 2e-10
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 16 KAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGL 72
             G  LG+ IV   E    S      IA + P G+A + G+L  G Q++  NG+ L   
Sbjct: 26 TVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSK 85

Query: 73 PLSTCQTYIK 82
               Q+ I 
Sbjct: 86 TYEEVQSIIS 95

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.3 bits (120), Expect = 2e-10
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 10 EIVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
           +V + K   +  G+ IV    +    +    + I  + P   A  CG+L +GD+I+++N
Sbjct: 5  HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 66 GVSLVGLPLSTCQTYIK 82
          G  +           IK
Sbjct: 65 GKDVRNSTEQAVIDLIK 81

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 4e-10
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +V   K   E +G+ +  +         ++A +   G   R G L++GD+I  +NG+S+ 
Sbjct: 4  LVQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

Query: 71 GLPLSTCQTYIK 82
             +   Q  ++
Sbjct: 60 NQTVEQLQKMLR 71

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 6e-10
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 12 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
            +PK  G +LG+ +V    +  G +     I  +     A   G L  GD+++  NG  
Sbjct: 22 TTMPKDSGALLGLKVVGGKMTDLGRL--GAFITKVKKGSLADVVGHLRAGDEVLEWNGKP 79

Query: 69 LVGLPLSTCQTYIK 82
          L G         I 
Sbjct: 80 LPGATNEEVYNIIL 93

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 6e-10
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 4  LNPVTSEIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 60
          +    +  VV+        G+ +     +      P  ++  + P   A RCG L +GD+
Sbjct: 4  IVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSP-PLVCFIEPDSPAERCGLLQVGDR 62

Query: 61 IIAVNGVSLVGLPLSTCQTYIK 82
          ++++NG++     +      ++
Sbjct: 63 VLSINGIATEDGTMEEANQLLR 84

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 47.6 bits (113), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V +   K   LG+ IV          + I ++   GA A  G++  GD ++ VN ++   
Sbjct: 5  VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFEN 64

Query: 72 LPLSTCQTYIK 82
          +        ++
Sbjct: 65 MSNDDAVRVLR 75

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 2e-09
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 10 EIVVVPKAKGEILGVVIV-ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          EI+ V   K   +G+ IV   G G     + + ++   GAA   G+L  GDQ+++V+G S
Sbjct: 4  EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 63

Query: 69 LVGLPLSTCQTYIK 82
          LVGL        + 
Sbjct: 64 LVGLSQERAAELMT 77

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 2e-09
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 12 VVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
          V + +   + LG+ IV           G ++  + I ++     A + G L  GD+I+ V
Sbjct: 5  VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 64

Query: 65 NGVSLVGLPLSTCQTYIK 82
          +G+ L           I+
Sbjct: 65 DGMDLRDASHEQAVEAIR 82

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (114), Expect = 2e-09
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 9  SEIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          ++++      G + LG+V++++G     P + I++L   GAAA  G L  GD +I+V   
Sbjct: 26 NKVIQTKLTVGNLGLGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHA 80

Query: 68 SLVGLPLSTCQTYIK 82
          +++G  L      ++
Sbjct: 81 NVLGYTLREFLKLLQ 95

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 3e-09
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 12  VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
           + +  +    LGV +        G+ L  + I ++   GAA + G+L + DQ+IAVNG +
Sbjct: 29  IPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87

Query: 69  LVGLPLSTCQTYIK 82
           L+G         ++
Sbjct: 88  LLGKSNHEAMETLR 101

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (111), Expect = 4e-09
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 18 KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTC 77
           G  LG+ I  SG       ++I++L   G A R G ++IGD+I+A+N  SL G PLS  
Sbjct: 12 YGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 69

Query: 78 QTYIK 82
             ++
Sbjct: 70 IHLLQ 74

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 4e-09
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V V KA    LG+ I   G  + +P ++I+ +    AA +   L +GD I++VNG  L  
Sbjct: 8  VTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65

Query: 72 LPLSTCQTYIK 82
                   +K
Sbjct: 66 ATHDEAVQALK 76

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 8e-09
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 3  HLNPVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
          H    T +IV + KA+   LG  +          +V+I+ +   GAA + G L+ GD+++
Sbjct: 13 HYGGETVKIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVL 67

Query: 63 AVNGVSLVGLPLSTCQTYIK 82
           +NG+ + G  ++     + 
Sbjct: 68 EINGIEIRGKDVNEVFDLLS 87

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          E+ +      + LG+ +           + I+ + P   AA+ G++  GD+II +NG+ +
Sbjct: 22 EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81

Query: 70 VGLP 73
              
Sbjct: 82 QNRE 85

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 1e-08
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +V + K  G  LG+ +  +   +    + I  + PA    R G L+ GD I++++G S+ 
Sbjct: 18 MVEIVKTPGSALGISLTTTSLRNKSV-ITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76

Query: 71 GLPLSTCQTYIK 82
             L      + 
Sbjct: 77 HCSLLEATKLLA 88

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 3e-08
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          E+ V  +      G  I+  G       ++I  +   G+A R G+L+ GD+++ V+G+ +
Sbjct: 10 ELDVHLRRMESGFGFRIL--GGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67

Query: 70 VGLPLSTCQTYIK 82
           G         + 
Sbjct: 68 AGKTHRYVIDLMH 80

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 3e-08
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAV 64
          E+  V   K E  LG+ I+  G G+        + +  +   GAA R G++ + DQI+ V
Sbjct: 2  ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 61

Query: 65 NGVSLVGLPLSTCQTYIK 82
          +G+SLVG+  +   T ++
Sbjct: 62 DGISLVGVTQNFAATVLR 79

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 4e-08
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 15 PKAKGEILGVVIV--ESGWGSML-------PTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
           + KG  L   +     G+G  +         + + ++ P G AA+ G++  GD I+ +N
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73

Query: 66 GVSLVGLPLSTCQTYIK 82
           V ++G   +      +
Sbjct: 74 EVCVLGHTHADVVKLFQ 90

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (103), Expect = 7e-08
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          EI +     G  LG  I    ++      P++ I  + P GAAA+ G+L + D I+ VN 
Sbjct: 4  EITLERGNSG--LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61

Query: 67 VSLVGLPLSTCQTYIK 82
          V +  +  S     +K
Sbjct: 62 VDVREVTHSAAVEALK 77

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 1e-07
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 12 VVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 64
          + + KA GE LG+ I         +        + I+ ++P GAA R G+L +G +++ V
Sbjct: 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72

Query: 65 NGVSLVGLPLSTCQTYIK 82
          N  SL+GL        ++
Sbjct: 73 NQQSLLGLTHGEAVQLLR 90

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 4e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 8  TSEIVVVPKAKGEI-LGVVIVE-SGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          +  +  V   +G   LG+ +++        P + I  L P   AA  G+L++GD+I+ VN
Sbjct: 6  SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65

Query: 66 GVSLVGLPLSTCQTYIK 82
          G SL+GL        I+
Sbjct: 66 GSSLLGLGYLRAVDLIR 82

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 7e-07
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 12 VVVPKAKGEILGVVIV--ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          VV+        G+ +        ++    +I+ +     A RCG L IGD+++A+NG+  
Sbjct: 19 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPT 78

Query: 70 VGLPLSTCQTYIK 82
                     ++
Sbjct: 79 EDSTFEEANQLLR 91

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 12 VVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          VV+ + + E  G VI+      ESG    +P   I  +     A RC +L +GD+I+AVN
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILAVN 72

Query: 66 GVSLVGLPLSTCQTYIK 82
          G S++ +P +     IK
Sbjct: 73 GQSIINMPHADIVKLIK 89

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.7 bits (95), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 10 EIVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 62
           + ++     + LG  I         +      P + I+ L P G A   G L + D++I
Sbjct: 5  RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 64

Query: 63 AVNGVSLVGLPLSTCQTYIK 82
           VNG+ + G  L      + 
Sbjct: 65 EVNGIEVAGKTLDQVTDMMV 84

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (94), Expect = 2e-06
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V + K K   LG ++ E       P V+I++L   GAA + G +  GD I+AVN   LV 
Sbjct: 5  VRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61

Query: 72 LPLSTCQTYIK 82
          L   +    ++
Sbjct: 62 LSYDSALEVLR 72

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 12 VVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          V + K      G+ +        + +   ++VI+++ P G A   G L   D+++ VNG 
Sbjct: 11 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGT 68

Query: 68 SLVGLPLSTCQTYIK 82
           +  +  S     ++
Sbjct: 69 PMEDVLHSFAVQQLR 83

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-06
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V +    G  LG+ I   G    L  + I  + P   A   G L +GDQI+ VNG S + 
Sbjct: 24 VNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLN 80

Query: 72 LPLSTCQTYIKVNHHL 87
          +        +K + HL
Sbjct: 81 ILHDEAVRLLKSSRHL 96

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (91), Expect = 4e-06
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 69
          ++ +   +  E  G  + +   G +   V + N+ PAG     G L   D+++ VN V  
Sbjct: 9  KVTLYKDSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRT 64

Query: 70 VGLPLSTCQTYIK 82
                     I 
Sbjct: 65 RDFDCCLVVPLIA 77

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 6e-06
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 10 EIVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 66
          E+ ++   KG  LG  I     +       ++ I  +   GAA + G+L IGD+++AVN 
Sbjct: 4  EVNLLKGPKG--LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 61

Query: 67 VSLVGLPLSTCQTYIK 82
           +L  +        +K
Sbjct: 62 TNLQDVRHEEAVASLK 77

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          IV + K  G  LG  I   G  S L  + I+ + P   A R   L  GDQ++AVN V   
Sbjct: 18 IVTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQ 74

Query: 71 GLPLSTCQTYIK 82
           +  S     +K
Sbjct: 75 DIEHSKAVEILK 86

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 8e-06
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 69
          ++ +   +    G  +       M   V+++ +AP   A  C  +LN GDQ++ +NG  +
Sbjct: 11 LIRMKPDENGRFGFNVKGGYDQKM--PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 68

Query: 70 VGLPLSTCQTYIK 82
                    +IK
Sbjct: 69 AEHTHDQVVLFIK 81

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 1e-05
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIAVN 65
          V + K  G  LG+ +        + T      + +  + P GAA   G+++ GD+++AVN
Sbjct: 8  VELAKTDGS-LGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 66

Query: 66 GVSLVGLPLSTCQTYIK 82
          GVSL G         ++
Sbjct: 67 GVSLEGATHKQAVETLR 83

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 1e-05
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 9  SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          S  + V  A     G  I     G    T +I         A    L  GD I+A+NG S
Sbjct: 5  SSGLTVDVAGPAPWGFRIS---GGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQS 61

Query: 69 LVGLPLSTCQTYIK 82
             +  +  Q+ I+
Sbjct: 62 AENMLHAEAQSKIR 75

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
          +   V   KG    G  I   G    +  + +  LA  G A R G++ +GDQII +NG S
Sbjct: 11 DYFTVDMEKGAKGFGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGES 68

Query: 69 LVGLPLSTCQTYIK 82
             +  +     IK
Sbjct: 69 TRDMTHARAIELIK 82

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (87), Expect = 2e-05
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 6  PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          P     +V+ +     LG  IV    G     + I+ +   G A   G+L  GDQI++VN
Sbjct: 7  PREPRRIVIHRGSTG-LGFNIVG---GEDGEGIFISFILAGGPADLSGELRKGDQILSVN 62

Query: 66 GVSLVGLPLSTCQTYIK 82
          GV L           +K
Sbjct: 63 GVDLRNASHEQAAIALK 79

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-05
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 22 LGVVIV-ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY 80
          LG  IV   G       + +  +   GAA+  G+L  GDQIIAVNG SL G+        
Sbjct: 15 LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI 74

Query: 81 IK 82
          +K
Sbjct: 75 LK 76

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 17 AKGEILGVVIV--ESGWG-SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
           + E++ + IV    G+G ++  +     +        C  L  GD I+ +N  ++  L 
Sbjct: 7  GQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLS 66

Query: 74 LSTCQTYIK 82
           +     +K
Sbjct: 67 HTEVVDILK 75

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (85), Expect = 3e-05
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 12 VVVPKAKGEILGVVIVESGWGSML----------PTVVIANLAPAGAAARCGQLNIGDQI 61
          V++ K   E  G V+  +   + +              + ++   G A R G L +GD +
Sbjct: 9  VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFL 67

Query: 62 IAVNGVSLVGLPLSTCQTYIK 82
          I VNG ++V +        I+
Sbjct: 68 IEVNGQNVVKVGHRQVVNMIR 88

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 5e-05
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 8   TSEIVVVPKAKGEI-LGVVIVESGWGSML--PTVVIANLAPAGAAARCGQLNIGDQIIAV 64
            + +  V   K    LG  +   G GS+     + I  +    A+ +   +  GD+I+ +
Sbjct: 27  EATVCTVTLEKMSAGLGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL 85

Query: 65  NGVSLVGLPLSTCQTYIK 82
            G ++ GL        IK
Sbjct: 86  GGTAMQGLTRFEAWNIIK 103

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 6e-05
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVG 71
          V++ K +   +G+ +     G     + +  +     A+  G L  GDQ++ +NG +  G
Sbjct: 6  VILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENCAG 59

Query: 72 LPLSTCQTYIK 82
                   +K
Sbjct: 60 WSSDKAHKVLK 70

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 7e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLP 73
          V        G  +     G      +  +    G+ A   QL+ GD ++A++GV+   + 
Sbjct: 5  VTLTGPGPWGFRLQ---GGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT 61

Query: 74 LSTCQTYIK 82
              Q  IK
Sbjct: 62 HLEAQNKIK 70

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 70
          +  + K      G  +             I  + P   A + G L  GD+++ VNG ++ 
Sbjct: 6  LCCLEKGPNG-YGFHLH---GEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVE 60

Query: 71 GLPLSTCQTYIK 82
                  + I+
Sbjct: 61 KETHQQVVSRIR 72

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 23 GVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          G   V++  GS    + ++ +  +G AA+ G L I D+II VNG  L            K
Sbjct: 28 GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 38 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + ++ +A  GAA R G L +GD+++++NGV +         + + 
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT 84

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 8  TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 67
          +S  VV+P       G  +   G     P V+       G+ A    L  GD I+A++G 
Sbjct: 5  SSGNVVLPGPAP--WGFRLS-GGIDFNQPLVITRITP--GSKAAAANLCPGDVILAIDGF 59

Query: 68 SLVGLPLSTCQTYIK 82
              +  +  Q  IK
Sbjct: 60 GTESMTHADAQDRIK 74

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 28 ESGWG---SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
          + G+G        V +  +   G A R G L   D ++ +N   +           I+
Sbjct: 7  KDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIR 63

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 4e-04
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 10 EIVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 65
          E+ +    +   LG+ I      + +      + I+ ++  G AAR   + +GD+++ VN
Sbjct: 9  ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVN 67

Query: 66 GVSLVGLPLSTCQTYIK 82
          GV+L G         ++
Sbjct: 68 GVALQGAEHHEAVEALR 84

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 7e-04
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 10 EIVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 68
           +V + +AK    LG  I   G    +  + ++ + P   A + G L +GDQI+ VN  S
Sbjct: 10 RLVSLRRAKAHEGLGFSIR-GGSEHGVG-IYVSLVEPGSLAEKEG-LRVGDQILRVNDKS 66

Query: 69 LVGLPLSTCQTYIK 82
          L  +  +     +K
Sbjct: 67 LARVTHAEAVKALK 80

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 0.003
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 28 ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK 82
              G  +   +I +L   G A R G + +G +II +NG S+V  P       + 
Sbjct: 12 RYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILS 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.89
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.85
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.85
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.85
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.84
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.84
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.83
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.83
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.83
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.83
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.83
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.82
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.82
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.82
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.81
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.81
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.8
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.8
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.8
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.8
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.79
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.79
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.79
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.79
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.79
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.79
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.79
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.79
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.79
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.78
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.77
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.77
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.77
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.77
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.77
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.77
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.76
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.76
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.75
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.75
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.74
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.74
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.73
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.73
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.69
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.69
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.68
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.65
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.63
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.58
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.49
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.19
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.0
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.87
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.76
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.68
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.5
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.46
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.44

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=110.62  Aligned_cols=76  Identities=66%  Similarity=1.047  Sum_probs=68.9

Q ss_pred             EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      ++++++.++.+|||+++.++.+...+++||.++.|+|||+++|+|++||+|++|||+++.+++|++++++||+++.
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~   76 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN   76 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4778998889999999866666667789999999999999999999999999999999999999999999998753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.85  E-value=1.3e-21  Score=108.20  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=63.2

Q ss_pred             EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++++.+.+.++|||++.++.......++||.++.|+|||+++|+|++||+|++|||+++.+++|++|+++||++
T Consensus         4 tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~   77 (92)
T d2f0aa1           4 TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDI   77 (92)
T ss_dssp             EEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhc
Confidence            45666655669999998444333456899999999999999999999999999999999999999999999863

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.2e-21  Score=105.87  Aligned_cols=77  Identities=22%  Similarity=0.340  Sum_probs=62.8

Q ss_pred             EEEEEECCCCCcccEEEEeCCC-------CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW-------GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~-------~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +.+++.+..+.+|||++.++..       .....++||.++.++|||+++|+|++||+|++|||+++.+++|++++++||
T Consensus         3 r~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk   82 (96)
T d2fcfa1           3 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR   82 (96)
T ss_dssp             EEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            6688888877899999983321       122347999999999999999999999999999999999999999999999


Q ss_pred             hCCC
Q psy3490          83 VNHH   86 (88)
Q Consensus        83 ~~~~   86 (88)
                      ++..
T Consensus        83 ~~~~   86 (96)
T d2fcfa1          83 KAGN   86 (96)
T ss_dssp             TCCS
T ss_pred             cCCC
Confidence            8753

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.8e-21  Score=108.46  Aligned_cols=78  Identities=19%  Similarity=0.377  Sum_probs=68.7

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      ..+.+.+.+..+.+|||++. ++.+....++||..+.++|+|+++|+|++||+|++|||+++.+++|++++++||++..
T Consensus         8 ~~~~v~l~k~~~~~lG~~i~-gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~   85 (107)
T d1x6da1           8 GIHVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQARE   85 (107)
T ss_dssp             TEEEEEEECCTTSCCSEEEE-CCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTS
T ss_pred             CcEEEEEEcCCCCccCEEEe-eccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCC
Confidence            44677788877789999998 4555556679999999999999999999999999999999999999999999998764

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-20  Score=103.97  Aligned_cols=77  Identities=30%  Similarity=0.422  Sum_probs=63.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.+++.+.+..+|||++.++.. .....++||+++.++|||+++|+|++||+|++|||+++.+++|++++++||++..
T Consensus         4 ei~~v~l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~   81 (92)
T d1t2ma1           4 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS   81 (92)
T ss_dssp             EEEEEEEECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCS
T ss_pred             eEEEEEEeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCC
Confidence            3445555556689999985433 2234579999999999999999999999999999999999999999999998753

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1e-20  Score=104.25  Aligned_cols=77  Identities=26%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.+.+++.+..+.+|||++.+ +.+ ...++||..+.|+|||+++|.|++||+|++|||+++.+++|++++.+||++..
T Consensus         4 q~r~V~l~k~~~~~lG~~i~g-g~~-~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~   80 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKG-GRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGK   80 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEE-EGG-GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             eEEEEEEEeCCCCccCEEEEc-ccc-CCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            347788998877799999983 332 23359999999999999999999999999999999999999999999998753

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=2.6e-20  Score=103.16  Aligned_cols=78  Identities=23%  Similarity=0.418  Sum_probs=66.0

Q ss_pred             cEEEEEECCCCCcccEEEEeCCC----CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGW----GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~----~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      .+.+++.+..+.+|||++.++..    .....++||..+.|+|||+++|+|++||+|++|||.++.+++|++++++||++
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45678888777799999984322    11233699999999999999999999999999999999999999999999987


Q ss_pred             CC
Q psy3490          85 HH   86 (88)
Q Consensus        85 ~~   86 (88)
                      ..
T Consensus        84 ~~   85 (94)
T d1ihja_          84 DF   85 (94)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.5e-20  Score=103.09  Aligned_cols=76  Identities=28%  Similarity=0.392  Sum_probs=64.5

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ++++++.+. ..+|||+|.+ +.+.    ...++||.++.++|||+++|+|++||+|++|||.++.+++|++++++||++
T Consensus         2 ~~~V~l~k~-~~glG~~i~g-g~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           2 YEEITLERG-NSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             EEEEEEECC-SSCCSEEECC-CSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CEEEEEEeC-CCcCCEEEEe-ecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            467888764 4589999973 3322    245799999999999999999999999999999999999999999999987


Q ss_pred             CC
Q psy3490          85 HH   86 (88)
Q Consensus        85 ~~   86 (88)
                      ..
T Consensus        80 ~~   81 (93)
T d1rgra_          80 GS   81 (93)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.2e-20  Score=103.92  Aligned_cols=74  Identities=26%  Similarity=0.428  Sum_probs=61.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.  +..+|||+|.++......+++||+.+.++|+|+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus        10 ~~v~~~--~~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   83 (96)
T d1wi4a1          10 RVITVT--KETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   83 (96)
T ss_dssp             EEEEEC--CSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             EEEEec--CCCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            444444  45589999984433334457999999999999999999999999999999999999999999999874

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.7e-20  Score=104.03  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=66.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      ...+++.+..+.+|||++.++.......++||..+.++|+|+++|+|++||+|++|||+++.+++|++++++|+++..
T Consensus        11 ~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~   88 (99)
T d1p1da2          11 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED   88 (99)
T ss_dssp             CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTT
T ss_pred             cEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCC
Confidence            356778777777999999744333344579999999999999999999999999999999999999999999998764

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=6.2e-20  Score=103.39  Aligned_cols=75  Identities=31%  Similarity=0.455  Sum_probs=65.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL   87 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~~   87 (88)
                      +.+++.+..+.+|||++. ++.+ ...++||..|.+++||+++| |++||+|++|||+++.+++|++++++||.+..+
T Consensus        17 r~V~l~r~~~~~lGf~i~-gg~~-~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~~v   91 (104)
T d1wi2a_          17 RIVTLKKPPGAQLGFNIR-GGKA-SQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAREI   91 (104)
T ss_dssp             EEEEECCCTTCCCSEEEE-CCSS-SCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSSSE
T ss_pred             EEEEEEeCCCCCcceEEE-cccc-CCCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCCeE
Confidence            678888877779999998 3433 33469999999999999999 999999999999999999999999999987653

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.5e-20  Score=100.57  Aligned_cols=76  Identities=25%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCC---CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWG---SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~---~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      .++++.|. ..+|||++.++...   ....++||.++.++|||+++|+|++||+|++|||+++.+++|++++++||+++.
T Consensus         3 ~~V~L~k~-~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~   81 (92)
T d2fe5a1           3 MEVNLLKG-PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD   81 (92)
T ss_dssp             EEEEEECC-TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS
T ss_pred             EEEEEEEC-CCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCC
Confidence            45667764 35899999843221   124579999999999999999999999999999999999999999999998753

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.4e-20  Score=103.29  Aligned_cols=76  Identities=26%  Similarity=0.348  Sum_probs=61.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCC------CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW------GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~------~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .++++.+. ..+|||+|.++..      .....++||.++.++++|+++|+|++||+|++|||+++.+++|++|+++||+
T Consensus        10 ~~V~l~k~-~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~   88 (107)
T d1uhpa_          10 LTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT   88 (107)
T ss_dssp             EEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEC-CCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHh
Confidence            34555543 3489999984321      1234579999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy3490          84 NHH   86 (88)
Q Consensus        84 ~~~   86 (88)
                      +..
T Consensus        89 ~~~   91 (107)
T d1uhpa_          89 AKE   91 (107)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            754

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.7e-19  Score=100.63  Aligned_cols=80  Identities=25%  Similarity=0.324  Sum_probs=65.3

Q ss_pred             CcccEEEEEECCCCCcccEEEEeCCC----C--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy3490           6 PVTSEIVVVPKAKGEILGVVIVESGW----G--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQT   79 (88)
Q Consensus         6 ~~~~~~~~i~~~~~~~lG~~i~~~~~----~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~   79 (88)
                      |-+..++++.+.. .+|||+|.....    .  ....++||..+.++|+|+++|+|++||+|++|||+++.+++|+++++
T Consensus         2 pg~~~~V~L~k~~-~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~   80 (99)
T d1ozia_           2 PGDTFEVELAKTD-GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   80 (99)
T ss_dssp             TTCEEEEEEECCS-SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             CCCEEEEEEEECC-CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHH
Confidence            4455677787653 589999973211    1  12347999999999999999999999999999999999999999999


Q ss_pred             HHHhCCC
Q psy3490          80 YIKVNHH   86 (88)
Q Consensus        80 ~lk~~~~   86 (88)
                      +||++..
T Consensus        81 ~lk~~~~   87 (99)
T d1ozia_          81 TLRNTGQ   87 (99)
T ss_dssp             HHHHSCS
T ss_pred             HHHCCCC
Confidence            9998753

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=6.5e-20  Score=102.35  Aligned_cols=80  Identities=28%  Similarity=0.408  Sum_probs=67.1

Q ss_pred             cccEEEEEECCCCC-cccEEEEeCCCC-------CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490           7 VTSEIVVVPKAKGE-ILGVVIVESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ   78 (88)
Q Consensus         7 ~~~~~~~i~~~~~~-~lG~~i~~~~~~-------~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~   78 (88)
                      +++|.+++.+.... +|||++.++...       ...+++||..+.|+|||+++|+|++||+|++|||.++.+++|++++
T Consensus         1 e~~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~   80 (98)
T d1rzxa_           1 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVT   80 (98)
T ss_dssp             CCCEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCcEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHH
Confidence            45788888887655 899999743211       1233699999999999999999999999999999999999999999


Q ss_pred             HHHHhCCC
Q psy3490          79 TYIKVNHH   86 (88)
Q Consensus        79 ~~lk~~~~   86 (88)
                      ++|+++..
T Consensus        81 ~~l~~~~~   88 (98)
T d1rzxa_          81 DMMVANSS   88 (98)
T ss_dssp             HHHHHTCT
T ss_pred             HHHHcCCC
Confidence            99998753

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=105.88  Aligned_cols=78  Identities=28%  Similarity=0.407  Sum_probs=67.0

Q ss_pred             cccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           7 VTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         7 ~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      .+.+.+++.+..+.+|||+|. ++.+. ..++||..|.++++|+++| |++||+|++|||+++.+++|++++++||.+.+
T Consensus        19 ~~~~~v~l~~~~~~~lGf~i~-gg~~~-~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~~   95 (128)
T d1uf1a_          19 GDEKKVNLVLGDGRSLGLTIR-GGAEY-GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSRH   95 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEE-CCTTT-TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSE
T ss_pred             CCeEEEEEEECCCCccCEEEE-eeccC-CCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCc
Confidence            344778888887779999998 44433 3469999999999999998 99999999999999999999999999998765


Q ss_pred             C
Q psy3490          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      +
T Consensus        96 v   96 (128)
T d1uf1a_          96 L   96 (128)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.9e-20  Score=99.81  Aligned_cols=73  Identities=25%  Similarity=0.444  Sum_probs=65.2

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .|.+.+.+..+++|||++..+.    ..++||.++.++|||+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~----~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~   74 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNE----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR   74 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred             cEEEEEEeCCCCCccEEEEEcC----CCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3778999988889999996322    235999999999999999999999999999999999999999999999875

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=106.38  Aligned_cols=77  Identities=29%  Similarity=0.439  Sum_probs=66.3

Q ss_pred             cEEEEEECCCCCcccEEEEeCCC-------CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGW-------GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYI   81 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~-------~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~l   81 (88)
                      .+.+++.+..+.+|||+|.++..       .....++||..+.+++||+++|+|++||+|++|||+++.+++|++++++|
T Consensus        10 ~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   89 (111)
T d1ujua_          10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             eEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHH
Confidence            46788998888899999984321       11234799999999999999999999999999999999999999999999


Q ss_pred             HhCC
Q psy3490          82 KVNH   85 (88)
Q Consensus        82 k~~~   85 (88)
                      |++.
T Consensus        90 k~~~   93 (111)
T d1ujua_          90 RSVG   93 (111)
T ss_dssp             SSCS
T ss_pred             HcCC
Confidence            9865

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-19  Score=100.81  Aligned_cols=76  Identities=29%  Similarity=0.455  Sum_probs=62.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCC----CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGW----GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~----~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .++++.+.. .+|||++.++..    .....++||.++.++|||+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus         4 ~~V~L~k~~-~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   82 (94)
T d1wf8a1           4 FPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK   82 (94)
T ss_dssp             EEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC
T ss_pred             EEEEEEeCC-CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456676643 489999974322    122336999999999999999999999999999999999999999999999875


Q ss_pred             C
Q psy3490          86 H   86 (88)
Q Consensus        86 ~   86 (88)
                      .
T Consensus        83 ~   83 (94)
T d1wf8a1          83 G   83 (94)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.7e-20  Score=99.84  Aligned_cols=77  Identities=29%  Similarity=0.330  Sum_probs=63.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      .+.+++.|. ..+|||+|.++.. .....++||.++.++|+|+++|.|++||+|++|||+++.+++|++++++||++..
T Consensus         3 ~~~V~l~K~-~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           3 CKSITLERG-PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             EEEEEECCB-TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             EEEEEEEeC-CCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            367778764 3589999974321 1223479999999999999999999999999999999999999999999998753

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-19  Score=101.33  Aligned_cols=76  Identities=30%  Similarity=0.443  Sum_probs=65.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHHL   87 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~~   87 (88)
                      .+.+.+.+..+.+|||+|.+ +.+ ..+++||..+.+++||++++ |++||.|++|||+++.+++|++++++||++.++
T Consensus         9 ~~~v~i~~~~~~glG~~i~~-g~~-~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~~   84 (101)
T d1x5na1           9 EKKVFISLVGSRGLGCSISS-GPI-QKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSL   84 (101)
T ss_dssp             SEEEEECCCSSCCCCEEEEE-CCS-SSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCSSE
T ss_pred             cEEEEEEeeCCCcccEEEec-cCC-CCCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCCCE
Confidence            36788888777799999983 332 34569999999999999987 999999999999999999999999999988764

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.3e-19  Score=100.34  Aligned_cols=76  Identities=29%  Similarity=0.409  Sum_probs=63.5

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCC-CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~-~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+++++.+.. .+|||+|.++.... ..+++||.++.+++||+++|+|++||+|++|||+++.+++|+|++++||+++
T Consensus         9 ~~~V~l~k~~-~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   85 (110)
T d1um1a_           9 VFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             EEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             EEEEEEEECC-CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3566676643 48999998543322 3447999999999999999999999999999999999999999999999875

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.7e-19  Score=102.61  Aligned_cols=76  Identities=22%  Similarity=0.361  Sum_probs=67.0

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.+++.+..+.+|||+|.. +.....+++||..+.++++|+++|.|++||+|++|||+++.+++|++++++||++..
T Consensus        17 ~~V~l~k~~~~~lGi~i~~-~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~   92 (117)
T d1v62a_          17 LMVEIVKTPGSALGISLTT-TSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISE   92 (117)
T ss_dssp             EEEEEECCTTCCCCCEEEE-ECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSS
T ss_pred             EEEEEEcCCCCCcCEEEEe-eccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCC
Confidence            6688888777799999984 333456679999999999999999999999999999999999999999999998753

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.9e-19  Score=101.03  Aligned_cols=73  Identities=32%  Similarity=0.384  Sum_probs=63.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+.+..+|||++.+ +.+  ..++||+.+.++|||+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus         3 ~~V~l~k~~~~glG~~i~~-~~~--~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~   75 (112)
T d1qaua_           3 ISVRLFKRKVGGLGFLVKE-RVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   75 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEE-CSS--SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCcEeEEEEe-ecC--CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCC
Confidence            4577888777799999973 222  346999999999999999999999999999999999999999999999875

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=101.57  Aligned_cols=78  Identities=17%  Similarity=0.354  Sum_probs=64.9

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCC--CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGW--GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~--~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...++++.++.+.+|||++.++..  .....++||+.+.++|||+++|+|++||+|++|||.++.+++|++++++||++.
T Consensus         8 e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~   87 (99)
T d1x5ra1           8 ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAA   87 (99)
T ss_dssp             EEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            335577777777799999984322  122346999999999999999999999999999999999999999999999653

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=4e-19  Score=99.74  Aligned_cols=76  Identities=29%  Similarity=0.369  Sum_probs=64.9

Q ss_pred             CcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         6 ~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      |...+.+++.+. ..+|||+|.+ +.  ...++||..+.++|+|+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus         7 ~~~~r~V~l~k~-~~glG~~i~~-~~--~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   82 (102)
T d1tp5a1           7 PREPRRIVIHRG-STGLGFNIVG-GE--DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   82 (102)
T ss_dssp             CCSCEEEEEECT-TSCCCEEEEE-CG--GGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCCCEEEEEEeC-CCcccEEEEe-cc--CCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCC
Confidence            344588888874 4599999973 32  2346999999999999999999999999999999999999999999999764

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.2e-19  Score=98.85  Aligned_cols=75  Identities=24%  Similarity=0.348  Sum_probs=62.6

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +++.+.+.++++|||+|.++....      ..+++||+.|.++|||++  +|++||+|++|||+++.+++|.+|+++||+
T Consensus        11 ~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~   88 (103)
T d2h3la1          11 QEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT   88 (103)
T ss_dssp             EEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            556777777789999998543211      235799999999999985  499999999999999999999999999998


Q ss_pred             CCC
Q psy3490          84 NHH   86 (88)
Q Consensus        84 ~~~   86 (88)
                      ++.
T Consensus        89 ~~~   91 (103)
T d2h3la1          89 FQN   91 (103)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            754

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.2e-19  Score=100.94  Aligned_cols=70  Identities=21%  Similarity=0.342  Sum_probs=58.8

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++.+ ...+|||+|. ++. ....++||..+.+++||+++|+|++||+|++|||+++.+++|++++++||++
T Consensus        13 V~l~k-~~~glG~~i~-gg~-~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~   82 (103)
T d1uepa_          13 VHLRR-MESGFGFRIL-GGD-EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA   82 (103)
T ss_dssp             CEEES-SSSSCCEEEC-CCC-STTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred             EEEEe-CCceEeEEEE-ecc-cCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            44444 3348999996 333 2344689999999999999999999999999999999999999999999865

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.6e-18  Score=97.31  Aligned_cols=77  Identities=23%  Similarity=0.346  Sum_probs=64.8

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCC----------CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHH
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGS----------MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQ   78 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~----------~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~   78 (88)
                      .+.+.+.+..+.+|||.+.++....          ...+++|..+.++|||+++| |++||+|++|||+++.+++|++++
T Consensus         6 ~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           6 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             eEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHH
Confidence            3678888887779999998543211          12258999999999999998 999999999999999999999999


Q ss_pred             HHHHhCCC
Q psy3490          79 TYIKVNHH   86 (88)
Q Consensus        79 ~~lk~~~~   86 (88)
                      ++||+++.
T Consensus        85 ~~ik~~~~   92 (104)
T d1q3oa_          85 NMIRQGGN   92 (104)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHcCCC
Confidence            99998753

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.5e-19  Score=100.47  Aligned_cols=78  Identities=29%  Similarity=0.456  Sum_probs=65.9

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCCC-----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWGS-----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~~-----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      ...++++.+....+|||+|.++....     ...++||.++.++++|+++|.|++||+|++|||+++.+++|++++++||
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            34678888877779999998432211     1235899999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy3490          83 VNH   85 (88)
Q Consensus        83 ~~~   85 (88)
                      ++.
T Consensus        90 ~~~   92 (114)
T d1uewa_          90 DAG   92 (114)
T ss_dssp             HTT
T ss_pred             cCC
Confidence            874

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=9.6e-19  Score=96.35  Aligned_cols=77  Identities=23%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             CCcccEEEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490           5 NPVTSEIVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus         5 ~~~~~~~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      +|.+.+.+++.+..+. +|||+|.++.   ...++||..+.++|+|+++| |++||+|++|||+++.+++|.+++.+|++
T Consensus         3 ~p~e~~~v~l~k~~~~~~~Gf~i~~~~---~~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~   78 (91)
T d1m5za_           3 TPVELHKVTLYKDSGMEDFGFSVADGL---LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAE   78 (91)
T ss_dssp             SCCEEEEEEEECCTTCSSSSEEEEECT---TSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCCceEEEEEEECCCCCceeEEEeccC---CCCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence            3455677888887654 8999997322   23469999999999999998 99999999999999999999999999998


Q ss_pred             CC
Q psy3490          84 NH   85 (88)
Q Consensus        84 ~~   85 (88)
                      ++
T Consensus        79 ~~   80 (91)
T d1m5za_          79 SG   80 (91)
T ss_dssp             ST
T ss_pred             CC
Confidence            65

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.1e-18  Score=96.71  Aligned_cols=73  Identities=32%  Similarity=0.506  Sum_probs=62.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .++++.+ .+.+|||++. ++. ....++||.++.++++|+++|+|++||+|++|||+++.+++|++++.+||++.
T Consensus         5 ~tV~l~k-~~~~lG~~i~-g~~-~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   77 (95)
T d1n7ea_           5 YTVELKR-YGGPLGITIS-GTE-EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   77 (95)
T ss_dssp             EEEEEEC-TTSCCCEEEE-CCS-STTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             EEEEEEE-CCCcEeEEEE-ecc-cCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4566665 4569999997 333 34445999999999999999999999999999999999999999999999864

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5.5e-19  Score=102.01  Aligned_cols=78  Identities=21%  Similarity=0.400  Sum_probs=65.1

Q ss_pred             ccEEEEEECCCCCcccEEEEeCCCC--CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           8 TSEIVVVPKAKGEILGVVIVESGWG--SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         8 ~~~~~~i~~~~~~~lG~~i~~~~~~--~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...++++.+....+|||+|.++...  ....++||..+.++++|+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~   94 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            3466777776666999999843221  22346999999999999999999999999999999999999999999999764

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=9e-19  Score=97.97  Aligned_cols=75  Identities=27%  Similarity=0.478  Sum_probs=66.1

Q ss_pred             CcccEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           6 PVTSEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         6 ~~~~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+..+.+.+.+..+.+|||++.++     ..++||.++.++|+|+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus        16 ~~~i~~V~l~k~~~~~lG~~v~~~-----~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~   90 (100)
T d1va8a1          16 GETVKIVRIEKARDIPLGATVRNE-----MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   90 (100)
T ss_dssp             TEECEEEEEEECTTCCCCEEEEEC-----SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CceEEEEEEEeCCCCCccEEEEec-----CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC
Confidence            345578889988777999999632     125999999999999999999999999999999999999999999999875

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.7e-19  Score=100.63  Aligned_cols=73  Identities=32%  Similarity=0.501  Sum_probs=62.2

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+.+.+ .+.+|||+|. ++.+...+.+||..+.++++|+++|+|++||+|++|||+++.+++|++++++||++
T Consensus         8 ~vv~~~k-~~~~lG~~i~-gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a   80 (103)
T d1ufxa_           8 TLVRVKK-SAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             EEEEEEC-CSSSCCEEEE-CBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             EEEEEEe-CCCccCEEEe-eecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHc
Confidence            3454543 4569999998 44455556689999999999999999999999999999999999999999999975

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5e-19  Score=96.41  Aligned_cols=71  Identities=23%  Similarity=0.285  Sum_probs=58.9

Q ss_pred             EEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          13 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        13 ~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      ++++..+.+|||++. ++.+ ...++||..+.+++||++++ |++||+|++|||+++.+++|++++++||++..
T Consensus         4 ~V~l~~~~~~Gf~i~-gg~~-~~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~   74 (85)
T d1rgwa_           4 SVTLTGPGPWGFRLQ-GGKD-FNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY   74 (85)
T ss_dssp             EEEECCSSCCCEEEC-CCGG-GTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS
T ss_pred             EEEecCCCCCCEEEE-eecC-CCCCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            344455679999996 3333 23458999999999999865 99999999999999999999999999998753

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.4e-19  Score=103.77  Aligned_cols=74  Identities=23%  Similarity=0.283  Sum_probs=61.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC--CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS--MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~--~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+. ..+|||+|. ++.+.  ...++||.++.++++|+++|+|++||+|++|||+++.+++|++++++||+++
T Consensus        31 ~~V~l~k~-~~glG~~i~-gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~  106 (130)
T d1i16a_          31 CTVTLEKM-SAGLGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             EEEEEETT-SSSTTEEEE-CCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             EEEEEEeC-CCccCEEEe-eccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCC
Confidence            34555543 348999998 44332  3447999999999999999999999999999999999999999999999864

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.1e-18  Score=97.13  Aligned_cols=76  Identities=20%  Similarity=0.376  Sum_probs=61.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+. ..+|||+|.++...    ....++||.++.++++|+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus         9 ~~v~l~k~-~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   87 (105)
T d1whaa_           9 HVACLARS-ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS   87 (105)
T ss_dssp             EEEEECCC-TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCC
T ss_pred             EEEEEEEC-CCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCC
Confidence            44555543 34899999843221    12447999999999999999999999999999999999999999999999775


Q ss_pred             C
Q psy3490          86 H   86 (88)
Q Consensus        86 ~   86 (88)
                      .
T Consensus        88 ~   88 (105)
T d1whaa_          88 P   88 (105)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.9e-19  Score=102.00  Aligned_cols=71  Identities=24%  Similarity=0.339  Sum_probs=59.5

Q ss_pred             EECCCCCcccEEEEeCCC-CCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          14 VPKAKGEILGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~-~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +.+..+.+|||++.++.. .....++||..+.++|+|+++|.|++||+|++|||.++.+++|++++++|+++
T Consensus        24 ~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~   95 (108)
T d2cssa1          24 MPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILES   95 (108)
T ss_dssp             CSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHG
T ss_pred             EecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            333445699999984322 22344799999999999999999999999999999999999999999999875

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=97.81  Aligned_cols=77  Identities=27%  Similarity=0.362  Sum_probs=65.0

Q ss_pred             ccEEEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           8 TSEIVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         8 ~~~~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      ..+.+++.+.+.. +|||+|. ++.+. ..++||..+.+++||+++| |++||+|++|||+++.+++|.+++++||+++.
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~-gg~~~-~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~   84 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIR-GGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKK   84 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEE-ECTTT-TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSSS
T ss_pred             CEEEEEEEECCCCCeeCEEEE-ecccC-CCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            3467778876644 8999997 34333 3469999999999999998 99999999999999999999999999998765


Q ss_pred             C
Q psy3490          87 L   87 (88)
Q Consensus        87 ~   87 (88)
                      +
T Consensus        85 ~   85 (101)
T d1ueza_          85 L   85 (101)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.3e-18  Score=94.19  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+.. .+|||++.+ +  ....++||..+.++|||+++| |++||+|++|||.++.+++|++++++||++.
T Consensus         5 r~v~l~k~~-~g~Gf~i~~-~--~~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~   75 (91)
T d1g9oa_           5 RLCCLEKGP-NGYGFHLHG-E--KGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAAL   75 (91)
T ss_dssp             EEEEEECBT-TBCCEEEEE-C--TTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCS
T ss_pred             EEEEEEECC-CeeeEEEEe-c--CCCCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            668888764 579999973 2  233468999999999999998 9999999999999999999999999999775

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.6e-18  Score=92.42  Aligned_cols=68  Identities=22%  Similarity=0.356  Sum_probs=60.7

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      .+.+++.+....+|||++. ++        +|.++.++|||+++| |++||+|++|||+++.+++|++++++||+++.
T Consensus         5 pr~V~l~k~~~g~~Gf~i~-~g--------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~   72 (82)
T d1r6ja_           5 PRTITMHKDSTGHVGFIFK-NG--------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGT   72 (82)
T ss_dssp             CEEEEEECCTTSCCCEEEE-TT--------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CEEEEEEeCCCCCcCEEEE-EE--------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCC
Confidence            3778899877668999996 21        699999999999999 99999999999999999999999999998754

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.3e-18  Score=93.44  Aligned_cols=75  Identities=23%  Similarity=0.357  Sum_probs=60.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCC----CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGS----MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~----~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+++.+ ...+|||+|.++....    ...++||..+.++|||+++| |++||+|++|||+++.+++|.+++.+|+++.
T Consensus        10 ~~v~l~k-~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   87 (97)
T d1x5qa1          10 LTLTILR-QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAG   87 (97)
T ss_dssp             EEEEEEC-SSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             EEEEEEe-CCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            3444554 3348999998443222    23479999999999999999 9999999999999999999999999999865


Q ss_pred             C
Q psy3490          86 H   86 (88)
Q Consensus        86 ~   86 (88)
                      +
T Consensus        88 ~   88 (97)
T d1x5qa1          88 T   88 (97)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-18  Score=92.34  Aligned_cols=71  Identities=18%  Similarity=0.306  Sum_probs=62.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.+.+.+....+|||++...     ..++||.++.++|||+++| |++||+|++|||+++.++++++++.+||++.+
T Consensus         4 r~v~l~k~~~~~lG~~l~~~-----~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~   74 (85)
T d1w9ea1           4 REVILCKDQDGKIGLRLKSI-----DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   74 (85)
T ss_dssp             EEEEEECCTTSCCSEEEEEE-----TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             EEEEEEeCCCCCEeEEEEeC-----CCCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCC
Confidence            56888988877999999622     2359999999999999998 99999999999999999999999999997753

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.2e-18  Score=97.34  Aligned_cols=65  Identities=22%  Similarity=0.328  Sum_probs=57.5

Q ss_pred             CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        19 ~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ..+|||++. ++.. ...++||..+.++++|+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus        29 ~~glG~~i~-gg~~-~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~   93 (123)
T d1ueqa_          29 NMGFGFTII-GGDE-PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             TTSCSEEEE-CCSS-SSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCeeCEEEE-eecC-CCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            349999998 3433 3456999999999999999999999999999999999999999999999863

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.3e-19  Score=99.01  Aligned_cols=73  Identities=21%  Similarity=0.370  Sum_probs=60.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhh-hCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAAR-CGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~-~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+.+.+....+|||++.+ +.+ ...++||.++.++|||++ +|.|++||+|++|||+++.+++|++++++||++
T Consensus        10 ~~v~l~~~~~g~lG~~l~g-g~d-~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1          10 VLIRMKPDENGRFGFNVKG-GYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             EEEEECCCSSSCCSEEEEE-EGG-GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCccEEEEe-eec-CCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4556666656689999973 332 234599999999999998 578999999999999999999999999999864

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.9e-19  Score=102.11  Aligned_cols=65  Identities=26%  Similarity=0.402  Sum_probs=58.5

Q ss_pred             CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          19 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        19 ~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      ..+|||+|. ++.+.+..++||..+.++|+|+++|+|++||+|++|||.++.+++|.+++++||++
T Consensus        27 ~~~lG~~i~-gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   91 (118)
T d1v6ba_          27 EGSLDLALE-GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA   91 (118)
T ss_dssp             CSCCCCEEE-EBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred             CCCCCEEEE-eeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhc
Confidence            458999998 45555566799999999999999999999999999999999999999999999864

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5.9e-19  Score=97.73  Aligned_cols=72  Identities=24%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             EEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+++.+..+.+|||+|.+ +.+ ...++||..+.+++||++.+ |++||+|++|||+++.+++|.+++++||++.
T Consensus         7 ~~tv~~~g~~~~Gf~i~g-g~d-~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   78 (94)
T d1vb7a_           7 GLTVDVAGPAPWGFRISG-GRD-FHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA   78 (94)
T ss_dssp             CEEEEECSSSCCSBCCEE-ETT-TTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             eEEEEEECCCcCCEEEEe-ecc-CCCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356676666699999983 333 23358999999999999876 9999999999999999999999999999875

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.3e-18  Score=100.95  Aligned_cols=72  Identities=26%  Similarity=0.361  Sum_probs=59.3

Q ss_pred             EEEEC--CCCCcccEEEEeCCCCCC---CCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          12 VVVPK--AKGEILGVVIVESGWGSM---LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        12 ~~i~~--~~~~~lG~~i~~~~~~~~---~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++.+  ....+|||+|.+ +.+.+   ..++||..+.++++|+++|+|++||+|++|||+++.+++|++++++||++
T Consensus        27 ~~v~l~~~~~~glG~~i~g-g~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a  103 (127)
T d1wg6a_          27 LEIPLNDSGSAGLGVSLKG-NKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS  103 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEE-EEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             EEEEEccCCCCcEeEEEEe-ecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhc
Confidence            34444  333489999984 33222   23699999999999999999999999999999999999999999999975

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.8e-18  Score=96.44  Aligned_cols=77  Identities=26%  Similarity=0.322  Sum_probs=61.8

Q ss_pred             EEEEEECCC------CCcccEEEEeCCCC---CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHH
Q psy3490          10 EIVVVPKAK------GEILGVVIVESGWG---SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTY   80 (88)
Q Consensus        10 ~~~~i~~~~------~~~lG~~i~~~~~~---~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~   80 (88)
                      ..+.+.+..      +.+|||+|.++...   ....++||..+.++++|+++|+|++||+|++|||+++.+++|++++++
T Consensus        14 ~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~   93 (117)
T d1ujda_          14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI   93 (117)
T ss_dssp             EEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHH
Confidence            445555442      34799999843211   123369999999999999999999999999999999999999999999


Q ss_pred             HHhCCC
Q psy3490          81 IKVNHH   86 (88)
Q Consensus        81 lk~~~~   86 (88)
                      ||++..
T Consensus        94 i~~~~~   99 (117)
T d1ujda_          94 ISQQSG   99 (117)
T ss_dssp             HSCCSS
T ss_pred             HHcCCC
Confidence            998753

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-17  Score=89.21  Aligned_cols=65  Identities=28%  Similarity=0.480  Sum_probs=55.6

Q ss_pred             EEEEECCC-CCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPKAK-GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~~~-~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+.+.+ ..+|||++. ++        +|.++.++|+|++++ |++||+|++|||+++.+++|++++++||++.
T Consensus         3 tv~l~r~~~~~~lGf~i~-~g--------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~   68 (79)
T d1y7na1           3 TVLIRRPDLRYQLGFSVQ-NG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAV   68 (79)
T ss_dssp             EEEEEESSTTSCCCEEEE-TT--------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCC
T ss_pred             EEEEEcCCCCCCcCEEEE-CC--------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCC
Confidence            35566544 349999996 22        799999999999976 9999999999999999999999999999875

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7e-19  Score=98.89  Aligned_cols=73  Identities=29%  Similarity=0.353  Sum_probs=60.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .++++.+. ..+|||+|.+ +.+. ..++||..+.++++|+++|.|++||+|++|||+++.+++|.+++++||.+.
T Consensus        13 ~~v~l~k~-~~glG~~i~g-g~~~-~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~   85 (103)
T d1wfva_          13 FTVDMEKG-AKGFGFSIRG-GREY-KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             EECCEECC-TTSSSBCCEE-ETTT-TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             EEEEEEeC-CCccCEEEEe-eccC-CCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            44555543 3489999973 3322 235899999999999999999999999999999999999999999998754

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=6.7e-18  Score=94.90  Aligned_cols=75  Identities=20%  Similarity=0.304  Sum_probs=61.9

Q ss_pred             EEEEEECCCCCcccEEEEeCCCC----CCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWG----SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~----~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .++++.+..+.+|||++.++...    ....++||.++.++|||+  +.|++||+|++|||+++.+++|.+++++||++.
T Consensus         9 ~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~   86 (104)
T d2csja1           9 YTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG   86 (104)
T ss_dssp             EEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSC
T ss_pred             EEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            56778887777999999843221    123479999999999997  349999999999999999999999999999875


Q ss_pred             C
Q psy3490          86 H   86 (88)
Q Consensus        86 ~   86 (88)
                      .
T Consensus        87 ~   87 (104)
T d2csja1          87 K   87 (104)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.2e-17  Score=87.65  Aligned_cols=67  Identities=19%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             EEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          12 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        12 ~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +++.+.. .+|||++. ++     .++||..+.++|||+++| |++||+|++|||.++.+++|.+++.++++++.
T Consensus         1 v~l~r~~-~g~Gf~l~-~~-----~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~   67 (77)
T d2f5ya1           1 ITIPRGK-DGFGFTIC-CD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPS   67 (77)
T ss_dssp             EEEECBT-TBTSEEEE-CS-----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS
T ss_pred             CEEecCC-CcccEEEE-CC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC
Confidence            3466543 47999996 22     237999999999999999 99999999999999999999999999997753

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-16  Score=91.65  Aligned_cols=70  Identities=27%  Similarity=0.395  Sum_probs=60.3

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+. ..+|||++.+ +.+   .++||..+.++|||++++ |++||+|++|||+++.+++|.+++.+|+.+.
T Consensus        21 r~v~l~k~-~~glG~~i~g-g~~---~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~   90 (117)
T d1uita_          21 RHVKVQKG-SEPLGISIVS-GEK---GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQC   90 (117)
T ss_dssp             EEEEEECS-SCCCCEEEEE-CTT---SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCC
T ss_pred             EEEEEEeC-CCccCEEEEc-cCC---CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCC
Confidence            66777764 4589999973 322   369999999999999987 9999999999999999999999999999775

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.2e-17  Score=92.68  Aligned_cols=70  Identities=21%  Similarity=0.319  Sum_probs=57.6

Q ss_pred             EECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Q psy3490          14 VPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNHH   86 (88)
Q Consensus        14 i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~~   86 (88)
                      +.+..+.+|||+|.++ .+ ...++||..+.++++|++. .|++||+|++|||+++.+++|++++++||++..
T Consensus         9 v~~~g~~g~Gf~i~gg-~d-~~~~v~V~~v~~g~~a~~~-~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~   78 (103)
T d1wf7a_           9 VSLVGPAPWGFRLQGG-KD-FNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTG   78 (103)
T ss_dssp             EEEESSSCCSCCEEEE-TT-TTEEEEECCCCTTCHHHHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHCSS
T ss_pred             EEEECCCCccEEEEcc-cC-CCCCEEEEecCCCChHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3334456999999843 32 2345999999999999975 599999999999999999999999999998753

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.2e-17  Score=94.89  Aligned_cols=68  Identities=22%  Similarity=0.262  Sum_probs=58.7

Q ss_pred             EEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          10 EIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        10 ~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      +.+++.+.. .+|||+|. ++     .++||..|.+++||+++| |++||+|++|||+++.+++|+|++++||++.
T Consensus        17 r~v~l~k~~-~g~Gf~i~-g~-----~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   84 (111)
T d1vaea_          17 RGIHFTVEE-GDLGFTLR-GN-----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG   84 (111)
T ss_dssp             CCCCEECCS-SCCSCCEE-SS-----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTT
T ss_pred             EEEEEEECC-CccCEEEE-CC-----ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCC
Confidence            456677643 48999996 22     238999999999999999 9999999999999999999999999999874

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.9e-17  Score=92.55  Aligned_cols=75  Identities=20%  Similarity=0.292  Sum_probs=59.2

Q ss_pred             cEEEEEECCCC-CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKG-EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~-~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ++.+++.+... .+|||+|.++.......++||..+.+++||+++|+|++||+|++|||.++.  ++++++.+++.+.
T Consensus        20 ~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~   95 (124)
T d1wh1a_          20 LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEE   95 (124)
T ss_dssp             ECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSS
T ss_pred             eEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCC
Confidence            34556665444 489999984333334557999999999999999999999999999999997  5778888887643

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=5.2e-17  Score=94.04  Aligned_cols=70  Identities=27%  Similarity=0.417  Sum_probs=58.9

Q ss_pred             EEEEECCCCC-cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          11 IVVVPKAKGE-ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        11 ~~~i~~~~~~-~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+++...++. ||||.+...     .++++|..+.+++||+++|+|++||+|++|||.++.+++|++++++||+++
T Consensus        28 ~~~v~l~~g~~GlG~~i~~~-----~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~   98 (126)
T d1wifa_          28 VIQTKLTVGNLGLGLVVIQN-----GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             EEEEEEECCTTCCCCCEEEE-----TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             EEEEEEeeCCCcEEEEEEec-----CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCC
Confidence            3444444455 999999632     234899999999999999999999999999999999999999999999753

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=7.2e-17  Score=90.53  Aligned_cols=65  Identities=25%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             CCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          18 KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        18 ~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.+|||+|.+ +.+ ...++||..+.++++|++.+ |++||+|++|||+++.+++|.+++++||.+.
T Consensus        13 g~~~~Gf~l~g-g~d-~~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~   77 (103)
T d1v5la_          13 GPAPWGFRLSG-GID-FNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAAS   77 (103)
T ss_dssp             SSSCCSBCCEE-ETT-TTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCC
T ss_pred             CCCCCCEEEEe-ecC-CCCCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45699999984 333 23459999999999999765 9999999999999999999999999999864

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.58  E-value=7.2e-15  Score=80.65  Aligned_cols=61  Identities=28%  Similarity=0.432  Sum_probs=52.6

Q ss_pred             cccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          21 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        21 ~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      |+|+.+.  .......+++|..+.++|||+++| |++||.|++|||.++.++++++++++||..
T Consensus         6 GiGi~i~--~~~~~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~   66 (92)
T d1fc6a3           6 GVGLEIT--YDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGE   66 (92)
T ss_dssp             BCSEEEE--ECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBS
T ss_pred             EEEEEEE--EcCCCCceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCC
Confidence            8899884  222233459999999999999999 999999999999999999999999999854

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=76.10  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             cEEEEEECCCCCcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490           9 SEIVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus         9 ~~~~~i~~~~~~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...+++.+.. .+|||+|.++...     .++...   .+++..+.|++||+|++|||+++.+++|++++++||++.
T Consensus        11 ~~~v~l~k~~-~glGf~i~g~~~~-----~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~   78 (96)
T d1ujva_          11 LMTLTIVKGA-QGFGFTIADSPTG-----QRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CEEEEEECCS-SSSSEEEEEETTE-----EEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             EEEEEEEeCC-CcccEEEEeeCCC-----ceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            3556666643 4899999743221     233333   345555679999999999999999999999999999753

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=9.1e-11  Score=63.30  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CcccEEEEeCCCCCCCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          20 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        20 ~~lG~~i~~~~~~~~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      ..||+.+.  . .....+++|..+.++|||+++| |++||.|++|||.++.+  ..+....++.
T Consensus         3 ~~LGv~~~--~-~~~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~--~~~~~~~i~~   60 (88)
T d2z9ia1           3 ASLGVQVT--N-DKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRS   60 (88)
T ss_dssp             EECCEEEE--C-CC-CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCS--HHHHHHHHHT
T ss_pred             CEEeEEEE--e-cCCCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCc--HHHHHHHHHh
Confidence            47888884  2 2334579999999999999999 99999999999999974  5666666654

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.6e-10  Score=61.50  Aligned_cols=49  Identities=24%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             CCCcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          34 MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        34 ~~~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      ...+++|..+.++|||+++| |++||.|++|||.++.  +.++....+++++
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~   71 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKP   71 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCC
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCC
Confidence            34579999999999999998 9999999999999997  6788888887654

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.6e-09  Score=57.48  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=40.4

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .+++|..+.++|||+++| |++||.|++|||.++.  +.++..+.++.
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~--s~~dl~~~l~~   75 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT   75 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcC--CHHHHHHHhcC
Confidence            469999999999999999 9999999999999997  67788887764

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=1.9e-08  Score=54.44  Aligned_cols=47  Identities=15%  Similarity=0.082  Sum_probs=39.3

Q ss_pred             cEEEEEECCC--------ChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Q psy3490          37 TVVIANLAPA--------GAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVNH   85 (88)
Q Consensus        37 ~i~I~~v~~g--------~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~~   85 (88)
                      .+.|.++++|        |||+++|..++||.|++|||.++.+.  .+++++|++..
T Consensus        13 ~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~   67 (91)
T d1k32a1          13 HYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG--SNIYRVLSEKA   67 (91)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTT--BCHHHHHHTTT
T ss_pred             eEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCc--ceeEEEEecCC
Confidence            4889999987        99999993389999999999999854  47788887643

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.68  E-value=5.1e-08  Score=53.69  Aligned_cols=44  Identities=27%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKVN   84 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~~   84 (88)
                      +++|..+.+++||+. + |++||.|++|||..+.  +..+....++..
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~   47 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTI   47 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTC
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhC
Confidence            699999999999985 6 9999999999999997  678888888653

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=7.9e-09  Score=56.09  Aligned_cols=44  Identities=20%  Similarity=0.470  Sum_probs=37.3

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      .+++|..+.++|||+++| |+.||.|++|||.++.+.  .+....++
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~   70 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVG   70 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTT
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHH
Confidence            379999999999999998 999999999999999854  45555554

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.8e-08  Score=55.14  Aligned_cols=43  Identities=23%  Similarity=0.472  Sum_probs=36.7

Q ss_pred             cEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy3490          37 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIK   82 (88)
Q Consensus        37 ~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk   82 (88)
                      +++|.++.++|||+++| |++||.|++|||.++.+.  .+....+.
T Consensus        27 Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~--~~l~~~l~   69 (99)
T d1sota1          27 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVA   69 (99)
T ss_dssp             CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCS--HHHHHHHH
T ss_pred             ccEEEEecCCCCHHHcC-CCcceEEEEECCEecccH--HHHHHHHH
Confidence            68999999999999999 999999999999999865  44445554

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.44  E-value=2.3e-07  Score=49.52  Aligned_cols=45  Identities=20%  Similarity=0.196  Sum_probs=37.5

Q ss_pred             CcEEEEEECCCChhhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy3490          36 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVGLPLSTCQTYIKV   83 (88)
Q Consensus        36 ~~i~I~~v~~g~~a~~~g~l~~gd~i~~Vng~~~~~~~~~~~~~~lk~   83 (88)
                      .++.|..+.++|+|+++| |++||.|++|||.++.  +.++....+..
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~--~~~~~~~~~~~   63 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQS   63 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHT
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEee--cHHHHHHHHHh
Confidence            357889999999999999 9999999999999997  45566666543