Psyllid ID: psy3611
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | 2.2.26 [Sep-21-2011] | |||||||
| O13066 | 580 | Ran GTPase-activating pro | N/A | N/A | 0.514 | 0.418 | 0.491 | 7e-63 | |
| P46060 | 587 | Ran GTPase-activating pro | yes | N/A | 0.521 | 0.419 | 0.506 | 3e-62 | |
| P46061 | 589 | Ran GTPase-activating pro | yes | N/A | 0.521 | 0.417 | 0.497 | 9e-61 | |
| Q9VIW3 | 596 | Ran GTPase-activating pro | yes | N/A | 0.514 | 0.407 | 0.483 | 2e-54 | |
| P34342 | 960 | Ran GTPase-activating pro | yes | N/A | 0.480 | 0.236 | 0.459 | 1e-44 | |
| P41391 | 386 | Ran GTPase-activating pro | yes | N/A | 0.485 | 0.593 | 0.353 | 1e-24 | |
| P11745 | 407 | Ran GTPase-activating pro | yes | N/A | 0.362 | 0.420 | 0.389 | 6e-18 | |
| Q5DU56 | 1064 | Protein NLRC3 OS=Mus musc | no | N/A | 0.508 | 0.225 | 0.289 | 8e-16 | |
| Q7RTR2 | 1065 | Protein NLRC3 OS=Homo sap | no | N/A | 0.824 | 0.365 | 0.243 | 1e-15 | |
| C3VPR6 | 1915 | Protein NLRC5 OS=Mus musc | no | N/A | 0.940 | 0.231 | 0.230 | 8e-15 |
| >sp|O13066|RAGP1_XENLA Ran GTPase-activating protein 1 OS=Xenopus laevis GN=rangap1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 241 bits (616), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 173/244 (70%), Gaps = 1/244 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+L ELDLSDNAFGP GV G LL+S CF L+ELKLNN G+GI G K+L+ AL
Sbjct: 108 ITAGAQLTELDLSDNAFGPDGVRGFEALLKSPTCFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C++ S G PLALKVFIAGRNRLEN+GA L+ F+ + TLE V MPQNGI H GITA
Sbjct: 168 ECHKKSSAHGKPLALKVFIAGRNRLENDGATALSEAFRLIGTLEEVHMPQNGINHAGITA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+++F+ N L+ +NLNDNT T KG + + +AL L + ++N GDCL++S GA +IA
Sbjct: 228 LAESFKANSLLKVINLNDNTFTEKGGVAMAEALKTLRQVEVINFGDCLVRSKGAQAIASA 287
Query: 401 LTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L + L+D+NL+ EI + L +++++K+ L++++++ N GEEG E+++++++S
Sbjct: 288 LKEGLHKLKDLNLSYCEIKADAAVSLAESVEDKSDLEKLDLNGNCLGEEGCEQVQEILES 347
Query: 460 FGMA 463
MA
Sbjct: 348 INMA 351
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Xenopus laevis (taxid: 8355) |
| >sp|P46060|RAGP1_HUMAN Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV+G LL+SS CF L+ELKLNN G+GI G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F+ + TLE V MPQNGI H GITA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADA 287
Query: 401 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +AM +K +L++++++ N GEEG E+++++++
Sbjct: 288 IRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEG 347
Query: 460 FGMAAAL 466
F MA L
Sbjct: 348 FNMAKVL 354
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Homo sapiens (taxid: 9606) |
| >sp|P46061|RAGP1_MOUSE Ran GTPase-activating protein 1 OS=Mus musculus GN=Rangap1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 123/247 (49%), Positives = 169/247 (68%), Gaps = 1/247 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+S CF L+ELKLNN G+GI G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADA 287
Query: 401 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +A+ +K +L++++++ N GEEG E+++++M S
Sbjct: 288 VRGGLPKLKELNLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVMDS 347
Query: 460 FGMAAAL 466
F MA L
Sbjct: 348 FNMAKVL 354
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Required for postimplantation development. Mus musculus (taxid: 10090) |
| >sp|Q9VIW3|RAGP1_DROME Ran GTPase-activating protein OS=Drosophila melanogaster GN=RanGap PE=1 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 159/244 (65%), Gaps = 1/244 (0%)
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 283
GA+L LDLSDNA GP G+ GL +LLRS C++L+EL L N GLG G +LS+AL D +
Sbjct: 107 GAKLTVLDLSDNALGPNGMRGLEELLRSPVCYSLQELLLCNCGLGPEGGSMLSRALIDLH 166
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
++ K G PL L+VFI RNRLE+ GA +A F+ LKT E + + QN IY G+ AL++
Sbjct: 167 ANANKAGFPLQLRVFIGSRNRLEDAGATEMATAFQTLKTFEEIVLEQNSIYIEGVEALAE 226
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL-T 402
+F+ N +LR LN+NDNT+ +GA + +AL LP L ++ GDCL+K+ GA + L
Sbjct: 227 SFKHNPHLRVLNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALER 286
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 462
N LE ++L NEI+ GGL LV AM NK KL+ +N+ N FGEEG E++ M
Sbjct: 287 GNERLEVIDLGFNEINSDGGLVLVNAMGNKPKLRILNLDGNSFGEEGSEKIISEMSKLPT 346
Query: 463 AAAL 466
AAAL
Sbjct: 347 AAAL 350
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state (By similarity). Trans-acting factor necessary for meiotic distortion. Distortion is only seen in individuals that carry the SD tandem duplication and express an SD truncated protein. Binding of truncated SD product to the RSP locus initiates events that lead to sperm dysfunction. Drosophila melanogaster (taxid: 7227) |
| >sp|P34342|RGP2_CAEEL Ran GTPase-activating protein 2 OS=Caenorhabditis elegans GN=ran-2 PE=4 SV=3 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 144/235 (61%), Gaps = 8/235 (3%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ G ++ ELDLSDNAFGPIG + L DLL S F+LE LKLNNNGLGI G K ++K+L
Sbjct: 535 MTAGCKIKELDLSDNAFGPIGADALKDLLESPSSFSLEVLKLNNNGLGIGG-KQIAKSLT 593
Query: 281 DCYESSKKEG--SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 338
+C S G + L LK FIAGRNRLEN GA LAA FK L+T+E ++ QNGI+ GI
Sbjct: 594 ECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALAATFKALETVEWFDVRQNGIHEEGI 653
Query: 339 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398
AL A + N+NLR+L L DNT+ KGA L + L P L +LNL DCL++ AG + I
Sbjct: 654 RALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLESWPKLEVLNLSDCLIRDAGCNYII 713
Query: 399 KYLTD--NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ---INVSENQFGEE 448
+L + L++V L NE++ L++ L +++ N FG+E
Sbjct: 714 DHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFDGLTPKPVLHIHTNSFGDE 768
|
GTPase system comprising ran-1, ran-2 and ran-3 is essential in nucleocytoplasmic trafficking. Ran-2 is a GTPase activator for the nuclear RAS-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Required for correct chromosome alignment and segregation on the metaphase plate. Caenorhabditis elegans (taxid: 6239) |
| >sp|P41391|RNA1_SCHPO Ran GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rna1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 17/246 (6%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
+L + LSDNAFGP E L D L LE L L+NNGLG +++AL + +
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHT--PLEHLYLHNNGLGPQAGAKIARALQELAVN 152
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT-ALSDA 344
K + +P L+ I GRNRLEN K A F+ + L V+M QNGI GI L +
Sbjct: 153 KKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT-- 402
+ L+ L+L DNT T+ G+ L AL P+L L L DCLL + GA+++ +
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ-----INVSENQFGEEG--VEEMEK 455
+N L+ + L NEI LD V+ +K K + ++ N+F EE V+E+ +
Sbjct: 272 ENIGLQTLRLQYNEIE----LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327
Query: 456 LMKSFG 461
+ + G
Sbjct: 328 VFSTRG 333
|
GTPase activator for the nuclear Ras-related regulatory protein spi1 (Ran), converting it to the putatively inactive GDP-bound state. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P11745|RNA1_YEAST Ran GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 6/177 (3%)
Query: 230 LDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE 289
++LSDNAFG +E L D + + ++ L L+NNG+G + + KAL ++ K
Sbjct: 113 VNLSDNAFGLRTIELLEDYIAHAV--NIKHLILSNNGMGPFAGERIGKALFHLAQNKKAA 170
Query: 290 GSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGI-TALSDAFEE 347
P L+ FI GRNRLEN A LA K + L+ V++ QNGI G+ T + +
Sbjct: 171 SKPF-LETFICGRNRLENGSAVYLALGLKSHSEGLKVVKLYQNGIRPKGVATLIHYGLQY 229
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD 403
KNL L+L DNT T ++ L +AL SL LNL DCLLK+AG+ + K T+
Sbjct: 230 LKNLEILDLQDNTFTKHASLILAKALPTWKDSLFELNLNDCLLKTAGSDEVFKVFTE 286
|
GTPase activator for the nuclear Ras-related regulatory protein GSP1 (Ran), converting it to the putatively inactive GDP-bound state. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 36/276 (13%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLR------------------SSCCFA----- 256
SL L+ LDL N+ GP G + LAD L+ C A
Sbjct: 688 SLLVNRSLITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAEALVS 747
Query: 257 ---LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 313
+ L+L N +G+ G + ++ AL K+ S LK + N + + GA L
Sbjct: 748 NQTISMLQLQKNLIGLIGAQQMADAL-------KQNRS---LKALMFSSNTIGDRGAIAL 797
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
A K + LE +++ N I +G+T L A N+ L LNL +N+I+ +GA L QAL
Sbjct: 798 AEALKVNQILENLDLQSNSISDMGVTVLMRALCSNQTLSSLNLRENSISPEGAQALTQAL 857
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
+ +L L+L LL GA +IA + +N +L ++L N I L +A++
Sbjct: 858 CRNNTLKHLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNR 917
Query: 434 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE 469
L +++ EN G+EG + +K AL L+
Sbjct: 918 TLTTLDLQENAIGDEGASSVAGALKVNTTLIALYLQ 953
|
May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA. Mus musculus (taxid: 10090) |
| >sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 195/448 (43%), Gaps = 59/448 (13%)
Query: 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 71
++ + + +N I + G AL+ + N+ L L+L N+I +GA L AL +L L
Sbjct: 668 IQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSL 727
Query: 72 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 131
+L ++ GA S+A+ L N TL ++L N I G + A+K LK++ S
Sbjct: 728 SLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSS 787
Query: 132 NQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHN 191
N G+ G + A A L+ ++G E D +S +D+ L N
Sbjct: 788 NSIGDGGAK-----------ALAEALKVNQGL---ESLDLQSNSISDAGVAALMGALCTN 833
Query: 192 DSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRS 251
+ L+ L L +N+ P G + +A L +
Sbjct: 834 QT---------------------------------LLSLSLRENSISPEGAQAIAHALCA 860
Query: 252 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAK 311
+ L+ L L N L G + ++ A+ + + + L L+ N ++ A+
Sbjct: 861 NS--TLKNLDLTANLLHDQGARAIAVAVRE-----NRTLTSLHLQW-----NFIQAGAAQ 908
Query: 312 MLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371
L + ++L +++ +N I G A++ A + N L L L +I GA LG+
Sbjct: 909 ALGQALQLNRSLTSLDLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGE 968
Query: 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 431
AL+ +L IL+L + AGA ++A L N++L +NL N + + G + + A+
Sbjct: 969 ALAVNRTLEILDLRGNAIGVAGAKALANALKVNSSLRRLNLQENSLGMDGAICIATALSG 1028
Query: 432 KTKLKQINVSENQFGEEGVEEMEKLMKS 459
+L+ IN+ N G+ G + + +K+
Sbjct: 1029 NHRLQHINLQGNHIGDSGARMISEAIKT 1056
|
May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA. Homo sapiens (taxid: 9606) |
| >sp|C3VPR6|NLRC5_MOUSE Protein NLRC5 OS=Mus musculus GN=Nlrc5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 8e-15, Method: Composition-based stats.
Identities = 119/516 (23%), Positives = 196/516 (37%), Gaps = 72/516 (13%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L K L +++ N + +G+ L + + L+L+ N I+ +G + L +
Sbjct: 1233 LCCALSKCNALSQLDLTDNLLGDIGLRCLLECLPQLPISGWLDLSHNNISQEGILYLLET 1292
Query: 62 LSKLPSLAILNLG--------DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 113
L P++ +++ C K GA + + + + E V+ + +S L
Sbjct: 1293 LPSYPNIQEVSVSLSSEQIFRMCFSKKEGAGTSLRLCECSFSPEQVSKLASSLSQAQQLT 1352
Query: 114 LVKAMKNKTKLKQI----NVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169
+ K L Q+ N+ G G+ E + S + A + + C E
Sbjct: 1353 ELWLTKCHLDLPQLTMLLNLVNRPTGLLGLRLEEPWVDSVSLPALMEVCAQASGCLTELS 1412
Query: 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLK---TGAR 226
E + + E H + N A +H + H SH+ ++ T AR
Sbjct: 1413 ISEIQRKLWLQLE-----FPHQEGNSDSMALRLAHCDLETEH-----SHLMIQLVETYAR 1462
Query: 227 LVELDLSDNAFGP---IGVEGLADLLRSSC--------------------------CFAL 257
L +L LS +F + L ++L SSC C L
Sbjct: 1463 LQQLSLSQVSFNDNDGTSSKLLQNILLSSCELKSFRLTFSQVSTKSLTHLAFGLGHCHHL 1522
Query: 258 EELKLNNNGLGITGCKLLSKALHDCYESSKKEGS--PL---ALKVFIAG----------- 301
EEL +NN L +LL AL K S PL +L + I G
Sbjct: 1523 EELDFSNNSLREEDTELLMGALQGTCRLKKLHLSFLPLGASSLALLIQGLSRMTLLQDLC 1582
Query: 302 --RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
N++ + G + LAA+ KL L + ++ N I VG L+ + LR NL+ N
Sbjct: 1583 LSHNQIGDVGTQCLAAILPKLPELRKFDLSHNQIGDVGTQCLAAILPKLPELRKFNLSHN 1642
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
I + G L L KLP L +L + G +A L L +L+ N I
Sbjct: 1643 QIGHVGTQCLAAILPKLPELRKFDLSRNQIGDVGTQCLAAILPKLPELRKFDLSGNRIGP 1702
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 455
GG+ LVK++ + L++I + N GE E+ +
Sbjct: 1703 AGGVQLVKSLTHFEHLEEIKLGNNALGEPTALELAQ 1738
|
Probable regulator of the NF-kappa-B and type I interferon signaling pathways. May also regulate the type II interferon signaling pathway. Plays a role in homeostatic control of innate immunity and in antiviral defense mechanisms. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | ||||||
| 91078814 | 534 | PREDICTED: similar to ran gtpase-activat | 0.504 | 0.445 | 0.665 | 3e-81 | |
| 322796742 | 553 | hypothetical protein SINV_13014 [Solenop | 0.514 | 0.439 | 0.565 | 3e-68 | |
| 405976660 | 517 | Ran GTPase-activating protein 1 [Crassos | 0.533 | 0.487 | 0.543 | 9e-67 | |
| 332019511 | 583 | Ran GTPase-activating protein 1 [Acromyr | 0.493 | 0.399 | 0.572 | 1e-66 | |
| 158296865 | 598 | AGAP008267-PA [Anopheles gambiae str. PE | 0.531 | 0.419 | 0.547 | 9e-66 | |
| 156555416 | 587 | PREDICTED: ran GTPase-activating protein | 0.478 | 0.385 | 0.586 | 2e-65 | |
| 427785591 | 570 | Putative ran gtpase activating protein 1 | 0.512 | 0.424 | 0.551 | 2e-64 | |
| 296486973 | 585 | TPA: chondroadherin-like [Bos taurus] | 0.521 | 0.420 | 0.506 | 4e-63 | |
| 158519829 | 585 | ran GTPase-activating protein 1 [Bos tau | 0.521 | 0.420 | 0.506 | 5e-63 | |
| 440893622 | 640 | Ran GTPase-activating protein 1, partial | 0.521 | 0.384 | 0.506 | 5e-63 |
| >gi|91078814|ref|XP_970649.1| PREDICTED: similar to ran gtpase-activating protein [Tribolium castaneum] gi|270003723|gb|EFA00171.1| hypothetical protein TcasGA2_TC002993 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 159/239 (66%), Positives = 189/239 (79%), Gaps = 1/239 (0%)
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 283
GARL ELD+SDNAFGPIGVEGLA LLRSS C+ALEEL+LNNNGLGITG KLL+ AL DCY
Sbjct: 111 GARLTELDMSDNAFGPIGVEGLAALLRSSSCYALEELRLNNNGLGITGGKLLASALTDCY 170
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
SSK+ G PL LKVFIAGRNRLENEGAK LA VFK + TLE + MPQNGIYHVGI+ALS+
Sbjct: 171 NSSKETGKPLQLKVFIAGRNRLENEGAKALAEVFKMIGTLEEIAMPQNGIYHVGISALSE 230
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL-T 402
AF +NKNL+ LNLNDNTI KGA + +AL L L +N GDCLLK+AGA S+A L T
Sbjct: 231 AFTQNKNLQILNLNDNTIGEKGAEAIAKALPHLQQLKEINFGDCLLKTAGAISLANVLKT 290
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG 461
+ LE++ L NEI ++GGL LVKAM NK+KLK +N++ NQFGE+G +++E +K G
Sbjct: 291 GHANLEELTLGHNEIRLKGGLQLVKAMANKSKLKVLNLNGNQFGEDGRKQIETEIKQIG 349
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322796742|gb|EFZ19175.1| hypothetical protein SINV_13014 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/246 (56%), Positives = 178/246 (72%), Gaps = 3/246 (1%)
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 283
G++L ELDLSDNAFGPIG++GLA+LL SS C+AL++LKLNNNGLGI+G K+L+KAL C+
Sbjct: 75 GSQLTELDLSDNAFGPIGIQGLANLLASSPCYALQQLKLNNNGLGISGGKMLAKALEKCH 134
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
E+S KEG+PLALKVFI GRNRLENEGA+ LA+VF+KLKTLE V M QNGIYHVGI A++
Sbjct: 135 ENSSKEGTPLALKVFIVGRNRLENEGAQALASVFEKLKTLEEVVMQQNGIYHVGIAAIAQ 194
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT- 402
N NLR LNLNDNTI KGA L + L L LNLGDCLLK+ GA ++A+ L
Sbjct: 195 GLSANPNLRVLNLNDNTIGLKGARALAKVLPIFRGLEELNLGDCLLKTKGALALAEALEI 254
Query: 403 --DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 460
++T+L ++L+CNE+ G + KA +KT L + + N FG EG E + +++
Sbjct: 255 HGNHTSLRYLDLSCNELRAPAGNAIAKATHDKTLLTNLQLDGNCFGTEGRENLREILAKL 314
Query: 461 GMAAAL 466
G AL
Sbjct: 315 GRLDAL 320
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405976660|gb|EKC41159.1| Ran GTPase-activating protein 1 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 138/254 (54%), Positives = 188/254 (74%), Gaps = 2/254 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+K GA LV LDLSDNAFGP G+ GL LL+SS C+ L+EL+LNNNGLGITG K+L++ L
Sbjct: 57 MKAGAGLVVLDLSDNAFGPNGIVGLVALLKSSSCYTLQELRLNNNGLGITGGKVLAECLT 116
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+++S K G PL LKVF++GRNRLEN GA LAAVFK L +LE V MPQNGIY GITA
Sbjct: 117 ECHQNSVKAGKPLKLKVFVSGRNRLENPGATALAAVFKALGSLEEVAMPQNGIYAEGITA 176
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L++AF ENKNLR +NL+DNT T KGA + + L KL +L ++N GDCL+++ GA +I +
Sbjct: 177 LAEAFAENKNLRVMNLSDNTFTQKGAKNMAKVLPKLQNLEVINYGDCLVRTEGAIAITEA 236
Query: 401 LTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L + + L+++NL+ +EI +G + +V+ MKNK LK+++++ N FGE G EE+++ MK+
Sbjct: 237 LKEGHQKLKELNLSGSEIHKRGAIAVVENMKNKPNLKKLDLNCNMFGESGKEEIKEAMKN 296
Query: 460 FGMAAALV-LEDDE 472
G L L DDE
Sbjct: 297 NGKLDILASLSDDE 310
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|332019511|gb|EGI59990.1| Ran GTPase-activating protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/236 (57%), Positives = 174/236 (73%), Gaps = 3/236 (1%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
++L ELDLSDNAFGPIG+EGLA+LL SS C+ L++LKLNNNGLGI+G K+L+KAL CYE
Sbjct: 111 SQLTELDLSDNAFGPIGIEGLANLLASSPCYTLQQLKLNNNGLGISGGKMLAKALEKCYE 170
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
+S EG+P ALKVFI GRNRLENEGA+ LA+VF++LKTLE V M QNGIYHVGI A++
Sbjct: 171 NSSSEGTPFALKVFIVGRNRLENEGAQALASVFERLKTLEEVVMQQNGIYHVGIAAIAKG 230
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT-- 402
N NLR LNLNDNTI KGA L +AL L LNLGDCLLK+ GA IA+ L
Sbjct: 231 LSVNPNLRVLNLNDNTIGLKGAKALAKALPTFRGLEELNLGDCLLKTKGALVIAEALQIH 290
Query: 403 -DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 457
++T+L +++L+ NE+ + G + KAM +KT L + + N FG EG E++ +++
Sbjct: 291 GNHTSLRNLDLSNNELRMDAGNAIAKAMHDKTLLTNLELDGNCFGTEGREKLRQIL 346
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158296865|ref|XP_001689011.1| AGAP008267-PA [Anopheles gambiae str. PEST] gi|157014917|gb|EDO63574.1| AGAP008267-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 138/252 (54%), Positives = 178/252 (70%), Gaps = 1/252 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+L LD SDNA GP G+ GL DLL+S+ C+ LE+LKLNN GLGI G +L+KAL
Sbjct: 106 ITAGAQLTVLDCSDNALGPNGMVGLVDLLKSATCYTLEQLKLNNCGLGIEGGTMLAKALL 165
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+ + +S+K G PLALKVFIAGRNRLEN GAK L+ +F + TLE++EMPQNGIYHVGITA
Sbjct: 166 EGHTASRKVGKPLALKVFIAGRNRLENAGAKALSEMFATVGTLEQIEMPQNGIYHVGITA 225
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
LSDAF N+NLR LNLNDNTI KGA L A+ L L +N GDCLLK+ GA I +
Sbjct: 226 LSDAFRVNRNLRILNLNDNTIGPKGAAALSVAVQDLHHLREINFGDCLLKTKGAVLIGEA 285
Query: 401 LTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L +T LE ++ NEI GG LV A NK +L+ + ++ NQFG+E E+M++LM++
Sbjct: 286 LHQAHTELEVMDFGYNEIGPDGGFALVNASANKGRLRSLVLNGNQFGDECCEQMKELMRT 345
Query: 460 FGMAAALVLEDD 471
+ A+ LE+D
Sbjct: 346 YERDRAMELEED 357
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156555416|ref|XP_001605648.1| PREDICTED: ran GTPase-activating protein 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/230 (58%), Positives = 166/230 (72%), Gaps = 4/230 (1%)
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCY 283
G +LVELDLSDNAFGPIGV+GLADLLRSS C+ L+EL+LNNNGLGITG K+L+KAL DC+
Sbjct: 114 GTQLVELDLSDNAFGPIGVKGLADLLRSSSCYTLKELRLNNNGLGITGGKMLAKALMDCH 173
Query: 284 ESSKKEGS-PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 342
+S ++ S P LKVFIAGRNRLENEGA LA VF+ L +LE V MPQNGIYHVGI+AL+
Sbjct: 174 NNSMRDTSKPFGLKVFIAGRNRLENEGATALAEVFRTLTSLEEVVMPQNGIYHVGISALA 233
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402
+ N+ LR LNLNDNT+ KGA L L L LNLGDCLLK+ GA +A L
Sbjct: 234 NGLSVNQGLRILNLNDNTVGPKGAQALADVLHNFSCLERLNLGDCLLKTRGAVVLADALG 293
Query: 403 DN---TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 449
N +L ++NL+ NEI ++G + AM +KT+L + + N FGEEG
Sbjct: 294 INGNHPSLTELNLSFNEIKIRGAGSIADAMADKTQLTTLILDGNAFGEEG 343
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427785591|gb|JAA58247.1| Putative ran gtpase activating protein 1 [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 166/243 (68%), Gaps = 1/243 (0%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A L ELDLSDNAFGPIG L LL S CF LE L+LNNNGLG G + L+KAL C E
Sbjct: 113 ATLTELDLSDNAFGPIGAGALLPLLSSPVCFQLEVLRLNNNGLGTGGAEFLAKALTKCIE 172
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
S K G PLAL+ + GRNRLEN GA + AVF KL TLE V +PQNGIYH GI AL++
Sbjct: 173 DSTKAGKPLALRTLVCGRNRLENVGAIAMGAVFGKLHTLEEVALPQNGIYHEGIAALANG 232
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT-D 403
NKNLR LNLNDNT T KGA + QAL L +L ++N GDCLLK+AGA IA L
Sbjct: 233 LMSNKNLRILNLNDNTFTVKGARHMAQALRHLDNLEVINFGDCLLKTAGAKEIANSLKHG 292
Query: 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 463
+ L++VNL NEI+++GGL++V+A+K K L+ + + N+FG EGV +E +M++ G
Sbjct: 293 HNALKEVNLGNNEIALEGGLEIVEALKGKPDLETLELDGNKFGPEGVNTLEAVMEAVGKI 352
Query: 464 AAL 466
AL
Sbjct: 353 EAL 355
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|296486973|tpg|DAA29086.1| TPA: chondroadherin-like [Bos taurus] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+SS CF L ELKLNN G+GI G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGAVAMAKTLKTLRQVEVINFGDCLVRSKGAIAIADA 287
Query: 401 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI + L + +A+ +KT+L++++++ N GEEG E+++++++
Sbjct: 288 IHGGLPKLKELNLSFGEIKREAALSVAEAVADKTELEKLDLNGNMLGEEGCEQLQEVLEG 347
Query: 460 FGMAAAL 466
F MAA L
Sbjct: 348 FNMAAVL 354
|
Source: Bos taurus Species: Bos taurus Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|158519829|ref|NP_001103559.1| ran GTPase-activating protein 1 [Bos taurus] gi|158262606|gb|AAI54379.1| Ran GTPase activating protein 1 [Bos taurus] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+SS CF L ELKLNN G+GI G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGAVAMAKTLKTLRQVEVINFGDCLVRSKGAIAIADA 287
Query: 401 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI + L + +A+ +KT+L++++++ N GEEG E+++++++
Sbjct: 288 IHGGLPKLKELNLSFGEIKREAALSVAEAVADKTELEKLDLNGNMLGEEGCEQLQEVLEG 347
Query: 460 FGMAAAL 466
F MAA L
Sbjct: 348 FNMAAVL 354
|
Source: Bos taurus Species: Bos taurus Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|440893622|gb|ELR46319.1| Ran GTPase-activating protein 1, partial [Bos grunniens mutus] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+SS CF L ELKLNN G+GI G K+L+ AL
Sbjct: 164 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALT 223
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 224 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 283
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 284 LAQAFAINPLLRVINLNDNTFTEKGAVAMAKTLKTLRQVEVINFGDCLVRSKGAIAIADA 343
Query: 401 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI + L + +A+ +KT+L++++++ N GEEG E+++++++
Sbjct: 344 IHGGLPKLKELNLSFGEIKREAALSVAEAVADKTELEKLDLNGNMLGEEGCEQLQEVLEG 403
Query: 460 FGMAAAL 466
F MAA L
Sbjct: 404 FNMAAVL 410
|
Source: Bos grunniens mutus Species: Bos grunniens Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | ||||||
| UNIPROTKB|P46060 | 587 | RANGAP1 "Ran GTPase-activating | 0.533 | 0.429 | 0.472 | 3.3e-61 | |
| UNIPROTKB|F1MFD5 | 585 | RANGAP1 "Uncharacterized prote | 0.533 | 0.430 | 0.472 | 5.4e-61 | |
| UNIPROTKB|F1NIE8 | 579 | RANGAP1 "Uncharacterized prote | 0.533 | 0.435 | 0.456 | 4.2e-59 | |
| UNIPROTKB|F1PVY6 | 628 | RANGAP1 "Uncharacterized prote | 0.533 | 0.401 | 0.460 | 8.8e-59 | |
| UNIPROTKB|J9NZ28 | 641 | RANGAP1 "Uncharacterized prote | 0.533 | 0.393 | 0.460 | 8.8e-59 | |
| UNIPROTKB|O13066 | 580 | rangap1 "Ran GTPase-activating | 0.533 | 0.434 | 0.456 | 1.8e-58 | |
| MGI|MGI:103071 | 589 | Rangap1 "RAN GTPase activating | 0.533 | 0.427 | 0.464 | 1.8e-58 | |
| RGD|1310380 | 431 | Rangap1 "RAN GTPase activating | 0.533 | 0.584 | 0.456 | 3.8e-58 | |
| UNIPROTKB|F1MAA5 | 586 | Rangap1 "Protein Rangap1" [Rat | 0.533 | 0.430 | 0.452 | 4.2e-57 | |
| ZFIN|ZDB-GENE-060929-492 | 570 | rangap1a "RAN GTPase activatin | 0.527 | 0.436 | 0.446 | 3.8e-56 |
| UNIPROTKB|P46060 RANGAP1 "Ran GTPase-activating protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 120/254 (47%), Positives = 166/254 (65%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV+G LL+SS CF I G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F+ + TLE V MPQNGI H GITA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFRVIGTLEEVHMPQNGINHPGITA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAVNPLLRVINLNDNTFTEKGAVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADA 287
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +AM +K +L++++++ N GEEG E+++++++
Sbjct: 288 IRGGLPKLKELNLSFCEIKRDAALAVAEAMADKAELEKLDLNGNTLGEEGCEQLQEVLEG 347
Query: 460 FGMAAALV-LEDDE 472
F MA L L DDE
Sbjct: 348 FNMAKVLASLSDDE 361
|
|
| UNIPROTKB|F1MFD5 RANGAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 120/254 (47%), Positives = 167/254 (65%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+SS CF I G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGAVAMAKTLKTLRQVEVINFGDCLVRSKGAIAIADA 287
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI + L + +A+ +KT+L++++++ N GEEG E+++++++
Sbjct: 288 IHGGLPKLKELNLSFGEIKREAALSVAEAVADKTELEKLDLNGNMLGEEGCEQLQEVLEG 347
Query: 460 FGMAAALV-LEDDE 472
F MAA L L DDE
Sbjct: 348 FNMAAVLASLSDDE 361
|
|
| UNIPROTKB|F1NIE8 RANGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 116/254 (45%), Positives = 165/254 (64%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+S C+ I G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSPACYTLQELKLNNCGMGIGGGKILAAALK 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALK+F+AGRNRLEN+GA LA F + TLE V MPQNGI H GITA
Sbjct: 168 ECHRKSSAQGKPLALKIFMAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGITA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N L+ +NLNDNT T KGA+ + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINSLLKVINLNDNTFTEKGAVAMAETLKALRQVEVINFGDCLVRSKGALAIADA 287
Query: 401 LTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L + L+++NL+ EI L + +A+++K +L++++++ N GEEG E+++++++
Sbjct: 288 LKEGLHKLKELNLSFCEIKRDAALSVAEAIEDKVELEKLDLNGNSLGEEGCEQLQEILEG 347
Query: 460 FGMAAAL-VLEDDE 472
F MA L L DDE
Sbjct: 348 FNMATVLGSLSDDE 361
|
|
| UNIPROTKB|F1PVY6 RANGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 117/254 (46%), Positives = 162/254 (63%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+SS CF I G K+L+ AL
Sbjct: 149 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALT 208
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 209 ECHRKSSAQGKPLGLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 268
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L ++N GDCL++S GA +IA+
Sbjct: 269 LAQAFAINPLLRVINLNDNTFTEKGAVAMAKTLKTLRQAEVINFGDCLVRSKGAVAIAEA 328
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +A+ +K +L++++++ N GEEG E++++++
Sbjct: 329 VRGGLPKLKELNLSFCEIKRDAALAVAEAVADKAELEKLDLNGNMLGEEGCEQLQEVLDG 388
Query: 460 FGMAAALV-LEDDE 472
F MA L L DDE
Sbjct: 389 FNMARVLASLSDDE 402
|
|
| UNIPROTKB|J9NZ28 RANGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 117/254 (46%), Positives = 162/254 (63%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+SS CF I G K+L+ AL
Sbjct: 162 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSSACFTLHELKLNNCGMGIGGGKILAAALT 221
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 222 ECHRKSSAQGKPLGLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 281
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KGA+ + + L L ++N GDCL++S GA +IA+
Sbjct: 282 LAQAFAINPLLRVINLNDNTFTEKGAVAMAKTLKTLRQAEVINFGDCLVRSKGAVAIAEA 341
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +A+ +K +L++++++ N GEEG E++++++
Sbjct: 342 VRGGLPKLKELNLSFCEIKRDAALAVAEAVADKAELEKLDLNGNMLGEEGCEQLQEVLDG 401
Query: 460 FGMAAALV-LEDDE 472
F MA L L DDE
Sbjct: 402 FNMARVLASLSDDE 415
|
|
| UNIPROTKB|O13066 rangap1 "Ran GTPase-activating protein 1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 116/254 (45%), Positives = 167/254 (65%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+L ELDLSDNAFGP GV G LL+S CF I G K+L+ AL
Sbjct: 108 ITAGAQLTELDLSDNAFGPDGVRGFEALLKSPTCFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C++ S G PLALKVFIAGRNRLEN+GA L+ F+ + TLE V MPQNGI H GITA
Sbjct: 168 ECHKKSSAHGKPLALKVFIAGRNRLENDGATALSEAFRLIGTLEEVHMPQNGINHAGITA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+++F+ N L+ +NLNDNT T KG + + +AL L + ++N GDCL++S GA +IA
Sbjct: 228 LAESFKANSLLKVINLNDNTFTEKGGVAMAEALKTLRQVEVINFGDCLVRSKGAQAIASA 287
Query: 401 LTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L + L+D+NL+ EI + L +++++K+ L++++++ N GEEG E+++++++S
Sbjct: 288 LKEGLHKLKDLNLSYCEIKADAAVSLAESVEDKSDLEKLDLNGNCLGEEGCEQVQEILES 347
Query: 460 FGMAAAL-VLEDDE 472
MA L L DDE
Sbjct: 348 INMANILGSLSDDE 361
|
|
| MGI|MGI:103071 Rangap1 "RAN GTPase activating protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 118/254 (46%), Positives = 162/254 (63%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+S CF I G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PLALKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADA 287
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +A+ +K +L++++++ N GEEG E+++++M S
Sbjct: 288 VRGGLPKLKELNLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVMDS 347
Query: 460 FGMAAALV-LEDDE 472
F MA L L DDE
Sbjct: 348 FNMAKVLASLSDDE 361
|
|
| RGD|1310380 Rangap1 "RAN GTPase activating protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 116/254 (45%), Positives = 161/254 (63%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+S CF I G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLTLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADA 287
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +A+ +K +L++++++ N GEEG E++++++ S
Sbjct: 288 VRGGLPKLKELNLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVLDS 347
Query: 460 FGMAAALV-LEDDE 472
F MA L L DDE
Sbjct: 348 FNMAKVLASLSDDE 361
|
|
| UNIPROTKB|F1MAA5 Rangap1 "Protein Rangap1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 115/254 (45%), Positives = 159/254 (62%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALH 280
+ GA+LVELDLSDNAFGP GV G LL+S CF I G K+L+ AL
Sbjct: 108 ITAGAQLVELDLSDNAFGPDGVRGFEALLKSPACFTLQELKLNNCGMGIGGGKILAAALT 167
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+C+ S +G PL LKVF+AGRNRLEN+GA LA F + TLE V MPQNGI H G+TA
Sbjct: 168 ECHRKSSAQGKPLTLKVFVAGRNRLENDGATALAEAFGIIGTLEEVHMPQNGINHPGVTA 227
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400
L+ AF N LR +NLNDNT T KG + + + L L + ++N GDCL++S GA +IA
Sbjct: 228 LAQAFAINPLLRVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKGAVAIADA 287
Query: 401 LTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ L+++NL+ EI L + +A + +L++++++ N GEEG E++++++ S
Sbjct: 288 VRGGLPKLKELNLSFCEIKRDAALVVAEAGADHAELEKLDLNGNALGEEGCEQLQEVLDS 347
Query: 460 FGMAAALV-LEDDE 472
F MA L L DDE
Sbjct: 348 FNMAKVLASLSDDE 361
|
|
| ZFIN|ZDB-GENE-060929-492 rangap1a "RAN GTPase activating protein 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 112/251 (44%), Positives = 168/251 (66%)
Query: 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFAXXXXXXXXXXXXITGCKLLSKALHDCY 283
GARL LDLSDNAFGP GV+G+ LL+S+ C I G K+L+ AL +C+
Sbjct: 111 GARLKVLDLSDNAFGPDGVKGIEKLLKSAACHTLQELRLNNCGMGIGGGKILAAALSECH 170
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
+ S G+P LKVFIAGRNRLEN+GA LA F+ + +LE V MPQNGI + G+TAL+
Sbjct: 171 QQSSALGAPFKLKVFIAGRNRLENDGATALAQAFQLMGSLEEVHMPQNGINYPGVTALAT 230
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
A + N LR LNLNDNT T KGA+ + QAL L ++ ++N GDCL++S GAS++A+ + +
Sbjct: 231 AMQHNPQLRVLNLNDNTFTKKGAMAMAQALKHLRNVQVINFGDCLVRSEGASALAETVRE 290
Query: 404 NTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 462
L+++NL+ EI + L++ +++++K + ++++++ N GE+G + +++LM+S M
Sbjct: 291 GLPILKELNLSFGEIMEEAALEVAQSVQHKDQFEKLDLNGNSLGEDGCKSLKQLMESINM 350
Query: 463 AAAL-VLEDDE 472
A L L DDE
Sbjct: 351 ADKLGSLSDDE 361
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P46060 | RAGP1_HUMAN | No assigned EC number | 0.5060 | 0.5211 | 0.4190 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 472 | |||
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-52 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-26 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 3e-25 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 7e-13 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-12 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-11 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 6e-11 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 5e-10 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-06 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 2e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 6e-04 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 0.002 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-52
Identities = 103/256 (40%), Positives = 149/256 (58%), Gaps = 14/256 (5%)
Query: 219 MSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278
L G L ELDLSDNA GP G L LLRSS +L+ELKLNNNGLG G +LL+K
Sbjct: 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS---SLQELKLNNNGLGDRGLRLLAKG 131
Query: 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI 338
L D P AL+ + GRNRLE + LA + + L+ + + NGI GI
Sbjct: 132 LKDL---------PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182
Query: 339 TALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398
AL++ + N NL L+LN+N +T +GA L + L+ L SL +LNLGD L AGA+++A
Sbjct: 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242
Query: 399 K-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 457
L+ N +L ++L+CN+I+ G DL + + K L ++++ N+FGEEG + + + +
Sbjct: 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302
Query: 458 KSFG-MAAALVLEDDE 472
G +L ++DD
Sbjct: 303 LEPGNELESLWVKDDS 318
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
LA + + L+ + + NGI GI AL++ + N L L+LN+N +T +GA L +
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
L+ L SL +LNLGD L AGA+++A L+ N +L ++L+CN+I+ G DL + +
Sbjct: 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALVLEDDE 161
K L ++++ N+FGEEG + + + + G +L ++DD
Sbjct: 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 4/179 (2%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
RL ++DLSDNAFG E L DL+ SS L LKLNNNGLG + KAL +
Sbjct: 93 RLQKVDLSDNAFGSEFPEELGDLISSST--DLVHLKLNNNGLGPIAGGRIGKALFHLAYN 150
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 344
K P L+V I GRNRLEN ++ AA+ + + L+ V++ QNGI G+T L+
Sbjct: 151 KKAADKP-KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLG 209
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
+ +L L+L DNT T +G+ L AL + L L L DCLL + G S+ + +
Sbjct: 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268
|
Length = 388 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 35/335 (10%)
Query: 59 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVK 116
+ L KL L +L L L A ++A L +L+++ L+ NE +G L++
Sbjct: 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+ L+++++S+N G +G +E L++S + + + G
Sbjct: 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG-------------- 121
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
D D + N + +L+ L EL+L++N
Sbjct: 122 ---DRGLRLLAKGLKDLPPALEKLVLGRN--RLEGASCEALAKALRANRDLKELNLANNG 176
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALK 296
G G+ LA+ L+++C LE L LNNNGL G L++ L +L+
Sbjct: 177 IGDAGIRALAEGLKANC--NLEVLDLNNNGLTDEGASALAETLAS----------LKSLE 224
Query: 297 VFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN 355
V G N L + GA LA+ +L + + N I G L++ E ++L L+
Sbjct: 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284
Query: 356 LNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLL 389
L N +GA L ++L L L + D
Sbjct: 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 257 LEELKLNNNGLGITGCKLLSKALHD-------CYESSKKEGSPLALKVFIAG-------- 301
L+ L+L N LG K L+ AL C ++ P L+ + G
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84
Query: 302 --------------------------------RNRLENEGAKMLAAVFKKLK-TLERVEM 328
N L + G ++LA K L LE++ +
Sbjct: 85 ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
Query: 329 PQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL 388
+N + AL+ A N++L+ LNL +N I G L + L +L +L+L +
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 389 LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGE 447
L GAS++A+ L +LE +NL N ++ G L A+ + L +++S N +
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264
Query: 448 EGVE 451
+G +
Sbjct: 265 DGAK 268
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 19 QNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78
+N + AL+ A N+ L+ LNL +N I G L + L +L +L+L + L
Sbjct: 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205
Query: 79 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEE 137
GAS++A+ L +LE +NL N ++ G L A+ + L +++S N ++
Sbjct: 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265
Query: 138 GVE 140
G +
Sbjct: 266 GAK 268
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 28/259 (10%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
G+ +L + L+ L+L+DN + G L ++L + SL L L + L G
Sbjct: 69 GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRL 127
Query: 86 IAKYLTDNT-TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144
+AK L D LE + L N + L KA++ LK++N++ N G+ G+ + +
Sbjct: 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187
Query: 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG---DNSNLSHNDSNHSHNASN 201
+K+ L L ++ E S +L +
Sbjct: 188 GLKANCNLEVLDLNNNGLTD-----------EGASALAETLASLKSLEVLNLGD------ 230
Query: 202 QSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELK 261
N+ + + L L+ L LS N G + LA++L L EL
Sbjct: 231 ----NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES--LLELD 284
Query: 262 LNNNGLGITGCKLLSKALH 280
L N G G +LL+++L
Sbjct: 285 LRGNKFGEEGAQLLAESLL 303
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 5e-10
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
AA+ + + L+ V++ QNGI G+T L+ + L L+L DNT T +G+ L
Sbjct: 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDL-VKA 117
AL + L L L DCLL + G S+ + + L + NE LD+ +
Sbjct: 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE 296
Query: 118 MK--NKTKLKQINVSENQFGEEGV--EEMEKLMKSFGMAAALVLEDDEGECSDEEQDEES 173
+ L + + N+ E + E + + V+E EG+ EE +E
Sbjct: 297 FEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVE-----VVEKQEGDVVTEESTDEE 351
Query: 174 EEENDSDAE 182
E+ E
Sbjct: 352 SEDEVEIDE 360
|
Length = 388 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 11 TLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQALSKLPSLA 69
+L+ +++ NG+ G+ L+ ++ L L L N + L +AL L
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168
Query: 70 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINV 129
LNL + + AG ++A+ L N LE ++L N ++ +G L + + + L+ +N+
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228
Query: 130 SENQFGEEGVEEMEKLMKS 148
+N + G + + S
Sbjct: 229 GDNNLTDAGAAALASALLS 247
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 308 EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT----- 362
E K + + + L V++ N I + L + +NLR +N +D
Sbjct: 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDE 76
Query: 363 -YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 421
Y + L +AL K P L ++L D S + ++ +T L + L N +
Sbjct: 77 LYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136
Query: 422 GLDLVKAM---------KNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
G + KA+ +K KL+ + N+ E L++S
Sbjct: 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183
|
Length = 388 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 32/186 (17%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN-------------------- 355
+ KL L+ + + N + AL+ A +L+ L
Sbjct: 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77
Query: 356 ----------LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
L+DN + G L ++L + SL L L + L G +AK L D
Sbjct: 78 TKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136
Query: 406 -TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464
LE + L N + L KA++ LK++N++ N G+ G+ + + +K+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 465 ALVLED 470
L L +
Sbjct: 197 VLDLNN 202
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 15/160 (9%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTIT------YKGAIP 57
+ + L V++ N I + L + + LR +N +D Y +
Sbjct: 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM 83
Query: 58 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117
L +AL K P L ++L D S + ++ +T L + L N + G + KA
Sbjct: 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA 143
Query: 118 M---------KNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
+ +K KL+ + N+ E L++S
Sbjct: 144 LFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183
|
Length = 388 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| KOG1909|consensus | 382 | 99.97 | ||
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.96 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| KOG1909|consensus | 382 | 99.93 | ||
| KOG4194|consensus | 873 | 99.91 | ||
| KOG4194|consensus | 873 | 99.91 | ||
| KOG0444|consensus | 1255 | 99.88 | ||
| KOG0444|consensus | 1255 | 99.85 | ||
| KOG0618|consensus | 1081 | 99.82 | ||
| KOG0472|consensus | 565 | 99.79 | ||
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.78 | |
| KOG4308|consensus | 478 | 99.76 | ||
| KOG0472|consensus | 565 | 99.71 | ||
| KOG4308|consensus | 478 | 99.7 | ||
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.67 | |
| KOG0618|consensus | 1081 | 99.67 | ||
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.63 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.63 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.61 | |
| KOG4341|consensus | 483 | 99.55 | ||
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.52 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.52 | |
| KOG4341|consensus | 483 | 99.51 | ||
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.46 | |
| KOG4237|consensus | 498 | 99.43 | ||
| KOG4237|consensus | 498 | 99.23 | ||
| KOG3207|consensus | 505 | 99.23 | ||
| KOG2120|consensus | 419 | 99.22 | ||
| KOG2120|consensus | 419 | 99.21 | ||
| KOG3207|consensus | 505 | 99.12 | ||
| KOG0617|consensus | 264 | 98.98 | ||
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.96 | |
| KOG0617|consensus | 264 | 98.95 | ||
| KOG1259|consensus | 490 | 98.89 | ||
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.82 | |
| KOG1259|consensus | 490 | 98.69 | ||
| KOG2982|consensus | 418 | 98.58 | ||
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.46 | |
| KOG1947|consensus | 482 | 98.42 | ||
| KOG2982|consensus | 418 | 98.41 | ||
| KOG3665|consensus | 699 | 98.35 | ||
| KOG1859|consensus | 1096 | 98.33 | ||
| PLN03150 | 623 | hypothetical protein; Provisional | 98.23 | |
| KOG1947|consensus | 482 | 98.18 | ||
| KOG3665|consensus | 699 | 98.17 | ||
| KOG1859|consensus | 1096 | 98.14 | ||
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.13 | |
| KOG0531|consensus | 414 | 98.13 | ||
| KOG0532|consensus | 722 | 98.09 | ||
| KOG0532|consensus | 722 | 98.08 | ||
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.03 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.01 | |
| KOG0531|consensus | 414 | 98.01 | ||
| KOG4658|consensus | 889 | 97.94 | ||
| KOG4658|consensus | 889 | 97.89 | ||
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.86 | |
| KOG4242|consensus | 553 | 97.78 | ||
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.52 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.33 | |
| KOG4579|consensus | 177 | 97.31 | ||
| KOG4579|consensus | 177 | 97.31 | ||
| KOG1644|consensus | 233 | 97.3 | ||
| KOG2123|consensus | 388 | 97.2 | ||
| KOG4242|consensus | 553 | 97.1 | ||
| KOG2123|consensus | 388 | 96.86 | ||
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.35 | |
| KOG3735|consensus | 353 | 96.26 | ||
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 96.19 | |
| KOG1644|consensus | 233 | 96.09 | ||
| KOG3735|consensus | 353 | 96.05 | ||
| KOG2739|consensus | 260 | 95.95 | ||
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 95.86 | |
| KOG2739|consensus | 260 | 95.78 | ||
| KOG3864|consensus | 221 | 95.77 | ||
| KOG3864|consensus | 221 | 95.58 | ||
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.53 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.36 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 94.88 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 91.83 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 90.85 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 86.38 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.89 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 85.54 | |
| KOG3763|consensus | 585 | 82.93 |
| >KOG1909|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=227.84 Aligned_cols=299 Identities=39% Similarity=0.587 Sum_probs=248.6
Q ss_pred HHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhH-HhhhccCCCCCCccccchhhhcccCCccccCCCccCCCC
Q psy3611 114 LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA-ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND 192 (472)
Q Consensus 114 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~-~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (472)
+...+....+++.+++++|.++.+....+++.++..+.|+ ..+-+.+.++...++|.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e---------------------- 79 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPE---------------------- 79 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHH----------------------
Confidence 3444444455555555555555555555555555555442 23334445555555554
Q ss_pred CCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHH
Q psy3611 193 SNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 272 (472)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~ 272 (472)
....+ ...+..++.|++|+||.|.+++.++..+..++++ |..|++|.|.+|.+++.+.
T Consensus 80 -------------------~L~~l-~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag 137 (382)
T KOG1909|consen 80 -------------------ALKML-SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSS--CTDLEELYLNNCGLGPEAG 137 (382)
T ss_pred -------------------HHHHH-HHHHhcCCceeEeeccccccCccchHHHHHHHHh--ccCHHHHhhhcCCCChhHH
Confidence 22223 3335566799999999999999999999999975 6799999999999999999
Q ss_pred HHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCcc
Q psy3611 273 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 352 (472)
Q Consensus 273 ~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~ 352 (472)
..+++++..+. ...+.+..+.|+.+...+|++.+.|+..+...+...++|+.+.++.|.|...|+..+..++..+++|+
T Consensus 138 ~~l~~al~~l~-~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 138 GRLGRALFELA-VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred HHHHHHHHHHH-HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 99999988887 56788899999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc-CCCCCEEECcCCCCCchhHHHHHHHHhc
Q psy3611 353 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKN 431 (472)
Q Consensus 353 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 431 (472)
.|||.+|.++.+|...+++.++.+++|+.|++++|.+.+.|+..+..++.. ++.|+.+.+.+|.|+.+++..+..++..
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999888864 5999999999999999999999999999
Q ss_pred CCcccEEEccCCCC--ChhHHHHHHHHH
Q psy3611 432 KTKLKQINVSENQF--GEEGVEEMEKLM 457 (472)
Q Consensus 432 ~~~L~~L~l~~n~i--~~~~~~~l~~~l 457 (472)
.+.|+.|++++|.+ .+.++..+...+
T Consensus 297 k~dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred chhhHHhcCCcccccccchhHHHHHHhc
Confidence 99999999999999 667777666655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=220.94 Aligned_cols=236 Identities=42% Similarity=0.648 Sum_probs=179.4
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
++.|++|++++|.+.......+...... ++|++|++++|++++.+...+...+... +++|+.|++++|
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~---------~~~L~~L~L~~n 147 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDL---------PPALEKLVLGRN 147 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhC---------CCCceEEEcCCC
Confidence 3677777777777655444445444321 4577778877777776666666555542 156888888888
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+...+...+...+..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+..+++|++|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 88776666677777778888888888888887777777777777888888888888888777767777788888888888
Q ss_pred cCCCCCChHHHHHHHHHhh-cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC-C
Q psy3611 384 LGDCLLKSAGASSIAKYLT-DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF-G 461 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~-~ 461 (472)
+++|.+++.+...+...+. ..+.|+.|++++|.+++.+...+...+..+++|+++++++|.++..+...++..++.. +
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 8888888777666655443 2578888999888888888888888888888889999999988888888888888888 7
Q ss_pred ceeEEecCCC
Q psy3611 462 MAAALVLEDD 471 (472)
Q Consensus 462 ~L~~L~l~~~ 471 (472)
.++.+++.++
T Consensus 308 ~~~~~~~~~~ 317 (319)
T cd00116 308 ELESLWVKDD 317 (319)
T ss_pred chhhcccCCC
Confidence 8888888765
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-26 Score=218.68 Aligned_cols=313 Identities=29% Similarity=0.420 Sum_probs=213.0
Q ss_pred eeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccC--cchHHHHHHHhhh
Q psy3611 43 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS--VQGGLDLVKAMKN 120 (472)
Q Consensus 43 L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~--~~~~~~l~~~l~~ 120 (472)
|+|..+.+....+. ..+..+.+|++++++++.+++.+...++..+...+.+++++++++.+. ..++..++..+..
T Consensus 3 l~L~~~~l~~~~~~---~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERAT---ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchH---HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 44555544433332 233444456666666666665555556666666666666666666655 4445555666666
Q ss_pred CCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccccc
Q psy3611 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNAS 200 (472)
Q Consensus 121 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (472)
+++|+.|++++|.+....+..+...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l------------------------------------------------------- 104 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESL------------------------------------------------------- 104 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHH-------------------------------------------------------
Confidence 6677777777666654333322221
Q ss_pred ccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHH
Q psy3611 201 NQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280 (472)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 280 (472)
... +.|++|++++|.+++.+...+...+... .++|++|++++|.++..+...+...+.
T Consensus 105 --------------------~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 105 --------------------LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL-PPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred --------------------hcc-CcccEEEeeCCccchHHHHHHHHHHHhC-CCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 011 3577777777777655555555554322 146777888777777666656655554
Q ss_pred hhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q psy3611 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360 (472)
Q Consensus 281 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 360 (472)
. +++|+.|++++|.+.+.+...++..+..+++|++|++++|.+++.+...+...+..+++|++|++++|.
T Consensus 163 ~----------~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 163 A----------NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred h----------CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 4 256788888888887777666777777778888888888888877777788888888888888888888
Q ss_pred CCcccHHHHHHHhcC-CCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEE
Q psy3611 361 ITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQI 438 (472)
Q Consensus 361 l~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L 438 (472)
+++.+...+++.+.. .+.|++|++++|.+++.+...+...+..+++|+.+++++|.+++.|...++..+... +.++++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 887666565554432 568888888888888777777888888888889999999988888888888888777 788888
Q ss_pred EccCCCC
Q psy3611 439 NVSENQF 445 (472)
Q Consensus 439 ~l~~n~i 445 (472)
++..|++
T Consensus 313 ~~~~~~~ 319 (319)
T cd00116 313 WVKDDSF 319 (319)
T ss_pred ccCCCCC
Confidence 8887754
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=266.77 Aligned_cols=376 Identities=20% Similarity=0.218 Sum_probs=234.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHh-hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDA-FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+..|..+++|+.|+|++|.+.. .+|.. +..+++|++|++++|.+. +..+. ..+++|++|++++|.+.+
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~----~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~----~~l~~L~~L~Ls~n~~~~- 154 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSG----PIPDDIFTTSSSLRYLNLSNNNFT--GSIPR----GSIPNLETLDLSNNMLSG- 154 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCC----cCChHHhccCCCCCEEECcCCccc--cccCc----cccCCCCEEECcCCcccc-
Confidence 3456677777777777776653 23433 336677777777777664 33331 345677777777777765
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~ 161 (472)
.++..++.+++|++|++++|.+.. .++..+..+++|++|++++|.+....+..+.. ++.|+.|.+....
T Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~L~~n~ 223 (968)
T PLN00113 155 ---EIPNDIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ----MKSLKWIYLGYNN 223 (968)
T ss_pred ---cCChHHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcC----cCCccEEECcCCc
Confidence 345556667777777777777664 35666667777777777777766554444332 4555554433221
Q ss_pred CCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh
Q psy3611 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241 (472)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 241 (472)
....++. ......+++.+++..- ......+..+..+++|++|++++|.+....
T Consensus 224 --l~~~~p~----------~l~~l~~L~~L~L~~n---------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 224 --LSGEIPY----------EIGGLTSLNHLDLVYN---------------NLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred --cCCcCCh----------hHhcCCCCCEEECcCc---------------eeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 1111111 0111222222222110 011122334455677777777777765443
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
...+.. +++|++|++++|.++..... .+..+++|+.|++++|.+.+. ++..+..++
T Consensus 277 p~~l~~------l~~L~~L~Ls~n~l~~~~p~--------------~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~ 332 (968)
T PLN00113 277 PPSIFS------LQKLISLDLSDNSLSGEIPE--------------LVIQLQNLEILHLFSNNFTGK----IPVALTSLP 332 (968)
T ss_pred chhHhh------ccCcCEEECcCCeeccCCCh--------------hHcCCCCCcEEECCCCccCCc----CChhHhcCC
Confidence 344432 34677777777776532211 123356788888888877653 566677788
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|++++|.+.. .++..+..+++|+.|++++|.+... +++.+...++|+.|++++|.+.+. ++..+
T Consensus 333 ~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~p~~~ 400 (968)
T PLN00113 333 RLQVLQLWSNKFSG----EIPKNLGKHNNLTVLDLSTNNLTGE----IPEGLCSSGNLFKLILFSNSLEGE----IPKSL 400 (968)
T ss_pred CCCEEECcCCCCcC----cCChHHhCCCCCcEEECCCCeeEee----CChhHhCcCCCCEEECcCCEeccc----CCHHH
Confidence 88888888887752 3455667778888888888877631 335566677888888888887754 56677
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
..+++|+.|++++|.+... ++..+..++.|+.|++++|.++.... ..+..+++|+.|+++++
T Consensus 401 ~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGE----LPSEFTKLPLVYFLDISNNNLQGRIN----SRKWDMPSLQMLSLARN 462 (968)
T ss_pred hCCCCCCEEECcCCEeeeE----CChhHhcCCCCCEEECcCCcccCccC----hhhccCCCCcEEECcCc
Confidence 7788889999988888764 57777888889999999888765332 23445888999998876
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=262.79 Aligned_cols=378 Identities=21% Similarity=0.266 Sum_probs=232.0
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+++.+.++++|++|++++|.+.. .+|..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+.+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~--~~~p--~~l~~l~~L~~L~L~~n~l~~- 274 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLT--GPIP--SSLGNLKNLQYLFLYQNKLSG- 274 (968)
T ss_pred CChHHcCcCCccEEECcCCccCC----cCChhHhcCCCCCEEECcCceec--cccC--hhHhCCCCCCEEECcCCeeec-
Confidence 46778899999999999998875 56777889999999999999875 4555 678899999999999999876
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~ 161 (472)
.++..+..+++|++|++++|.+.. .++..+..+++|+.|++++|.+.+..+..+. .+++|+.|.+....
T Consensus 275 ---~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~ 343 (968)
T PLN00113 275 ---PIPPSIFSLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALT----SLPRLQVLQLWSNK 343 (968)
T ss_pred ---cCchhHhhccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccCCcCChhHh----cCCCCCEEECcCCC
Confidence 356667778999999999999886 4677778899999999999988776555443 36667665554321
Q ss_pred CCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh
Q psy3611 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241 (472)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 241 (472)
..+.++. ......+++.++++.-. .....+..+...+.|++|++++|.+....
T Consensus 344 --l~~~~p~----------~l~~~~~L~~L~Ls~n~---------------l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 344 --FSGEIPK----------NLGKHNNLTVLDLSTNN---------------LTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred --CcCcCCh----------HHhCCCCCcEEECCCCe---------------eEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 1112221 01112222222221110 00011112233456666666666664333
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
...+. .+++|+.|++++|.++..... .+..++.|+.|++++|.+.+. ++..+..++
T Consensus 397 p~~~~------~~~~L~~L~L~~n~l~~~~p~--------------~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~ 452 (968)
T PLN00113 397 PKSLG------ACRSLRRVRLQDNSFSGELPS--------------EFTKLPLVYFLDISNNNLQGR----INSRKWDMP 452 (968)
T ss_pred CHHHh------CCCCCCEEECcCCEeeeECCh--------------hHhcCCCCCEEECcCCcccCc----cChhhccCC
Confidence 33332 245666666666665432111 112245666666666666542 344444566
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|++++|++.. .++..+ ..++|+.|++++|.+.. . ++..+..+++|+.|++++|.+.+. ++..+
T Consensus 453 ~L~~L~L~~n~~~~----~~p~~~-~~~~L~~L~ls~n~l~~--~--~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~ 519 (968)
T PLN00113 453 SLQMLSLARNKFFG----GLPDSF-GSKRLENLDLSRNQFSG--A--VPRKLGSLSELMQLKLSENKLSGE----IPDEL 519 (968)
T ss_pred CCcEEECcCceeee----ecCccc-ccccceEEECcCCccCC--c--cChhhhhhhccCEEECcCCcceee----CChHH
Confidence 66666666666541 122222 34566666666666652 1 224455566666777766666543 45555
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
..+++|+.|+|++|.++.. ++..+..+++|++|++++|++.... ...+..++.|+.|++++|
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQ----IPASFSEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHN 581 (968)
T ss_pred cCccCCCEEECCCCccccc----CChhHhCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCC
Confidence 6666677777776666543 4556666666777777766665432 233444666666666665
|
|
| >KOG1909|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=193.65 Aligned_cols=346 Identities=25% Similarity=0.363 Sum_probs=176.5
Q ss_pred HHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcc---ccc---hhHHHHHHHhhcCCcccEEECcC
Q psy3611 30 LSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL---LKS---AGASSIAKYLTDNTTLEDVNLTC 103 (472)
Q Consensus 30 l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~---l~~---~~~~~l~~~l~~~~~L~~L~l~~ 103 (472)
+...+.....++.+++++|.++......++..+++.+.|+..++++-- ..+ ..+..+.+.+..+++|++|+||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334444455566666666666555555555666666666666665431 111 11222233333444566666666
Q ss_pred CccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCcccc
Q psy3611 104 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183 (472)
Q Consensus 104 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 183 (472)
|-+...+...+.+.++++..|++|.|.+|.+++.+...++..+..+... .
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~-----k------------------------- 151 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN-----K------------------------- 151 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH-----h-------------------------
Confidence 6666555555555555566666666666666555555555543332110 0
Q ss_pred CCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEee
Q psy3611 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN 263 (472)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~ 263 (472)
-....+.|+.+...+|.+.+.+...++..++.. +.|+++.+.
T Consensus 152 ------------------------------------k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~--~~leevr~~ 193 (382)
T KOG1909|consen 152 ------------------------------------KAASKPKLRVFICGRNRLENGGATALAEAFQSH--PTLEEVRLS 193 (382)
T ss_pred ------------------------------------ccCCCcceEEEEeeccccccccHHHHHHHHHhc--cccceEEEe
Confidence 011124555555555555555555555555432 455555555
Q ss_pred CCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHH
Q psy3611 264 NNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343 (472)
Q Consensus 264 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 343 (472)
.|.|...+...++.++..+ ++|+.||+..|.++..|...+...+..++.|+.|++++|.+...|...+.+
T Consensus 194 qN~I~~eG~~al~eal~~~----------~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHC----------PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccccCchhHHHHHHHHhC----------CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 5555555555555555543 455555555555555555555555555555555555555555555555555
Q ss_pred HHhc-CCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC--ChHHHHHHHHHhhcC-CCCCEEECcCCCCCc
Q psy3611 344 AFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL--KSAGASSIAKYLTDN-TTLEDVNLTCNEISV 419 (472)
Q Consensus 344 ~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i--~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~ 419 (472)
++.. .|.|+.|.+.+|.|+.++...+...+...|.|+.|++++|.+ .++++..+...+..- ..+...+.+.+.+.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~ 343 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELER 343 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccccccchhhchhHHHHHh
Confidence 4442 355555555555555555544444444455555555555555 444444444433211 223333444445555
Q ss_pred hhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 420 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 420 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
+|............+-+.++++++.+...+...+
T Consensus 344 eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 344 EGEEDEEEEVEKKETFKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred hhhhHHHHHHHhcCcchhhcccccccchhHHHHh
Confidence 5555444444444455555555555544444433
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-26 Score=219.23 Aligned_cols=196 Identities=19% Similarity=0.214 Sum_probs=124.0
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+.++++|+.|.+..|.+..-....| ..|.++++|+|..|++.... ..++.+++.|+.|++
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~F------y~l~kme~l~L~~N~l~~vn--------------~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAF------YGLEKMEHLNLETNRLQAVN--------------EGWLFGLTSLEQLDL 300 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcce------eeecccceeecccchhhhhh--------------cccccccchhhhhcc
Confidence 3445666666666666633222222 12346777777777764221 134455677888888
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH-HHhcCCCCC
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG-QALSKLPSL 379 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~~L 379 (472)
|.|.+..- -+..++.+++|+.|++++|+|+.-. ...|..+..|++|++++|.++. ++ .++...++|
T Consensus 301 S~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~----~~sf~~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL 367 (873)
T KOG4194|consen 301 SYNAIQRI----HIDSWSFTQKLKELDLSSNRITRLD----EGSFRVLSQLEELNLSHNSIDH-----LAEGAFVGLSSL 367 (873)
T ss_pred chhhhhee----ecchhhhcccceeEeccccccccCC----hhHHHHHHHhhhhcccccchHH-----HHhhHHHHhhhh
Confidence 88877752 3445667888888888888876322 3455566778888888887762 22 245667788
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
+.|||..|.+... +..-+.++..++.|+.|++.||++... --.++..++.|++|++.+|.|-......+.
T Consensus 368 ~~LdLr~N~ls~~-IEDaa~~f~gl~~LrkL~l~gNqlk~I----~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 368 HKLDLRSNELSWC-IEDAAVAFNGLPSLRKLRLTGNQLKSI----PKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhhcCcCCeEEEE-EecchhhhccchhhhheeecCceeeec----chhhhccCcccceecCCCCcceeecccccc
Confidence 8888888876421 111234556678888888888887763 234677778888888888877655444443
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-26 Score=215.68 Aligned_cols=370 Identities=21% Similarity=0.255 Sum_probs=241.1
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
+.|.++++|+.++|.+|.++ .+|.+.....+|+.|+|.+|.|+.... +.+..++.|++||||.|.|+....
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt-----~IP~f~~~sghl~~L~L~~N~I~sv~s----e~L~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELT-----RIPRFGHESGHLEKLDLRHNLISSVTS----EELSALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHhcCCcceeeeeccchhh-----hcccccccccceeEEeeeccccccccH----HHHHhHhhhhhhhhhhchhhcccC
Confidence 45667777777777777766 466666666667777777777754433 345556677777777776664321
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
..+ ..-.++++|+|++|.|+..+. ..+....+|.+|.|+.|.++.-.+..+ +.++.|+.|.++...-+
T Consensus 167 ~sf----p~~~ni~~L~La~N~It~l~~----~~F~~lnsL~tlkLsrNrittLp~r~F----k~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 167 PSF----PAKVNIKKLNLASNRITTLET----GHFDSLNSLLTLKLSRNRITTLPQRSF----KRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCC----CCCCCceEEeecccccccccc----ccccccchheeeecccCcccccCHHHh----hhcchhhhhhcccccee
Confidence 122 223567777777777775332 233444577777777777764433322 23555655554432211
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
.... +. |..-.++.+-+.....+..+..+++-.+.++++|+|+.|.++...-.
T Consensus 235 ive~--------------------lt-------FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 235 IVEG--------------------LT-------FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred eehh--------------------hh-------hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 1100 00 00111222333334455566667777889999999999998655444
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
++.. ++.|+.|++++|.|.-.-.. .+.-+++|+.|+|+.|+++.- =+..|..+..|
T Consensus 288 ~lfg------Lt~L~~L~lS~NaI~rih~d--------------~WsftqkL~~LdLs~N~i~~l----~~~sf~~L~~L 343 (873)
T KOG4194|consen 288 WLFG------LTSLEQLDLSYNAIQRIHID--------------SWSFTQKLKELDLSSNRITRL----DEGSFRVLSQL 343 (873)
T ss_pred cccc------cchhhhhccchhhhheeecc--------------hhhhcccceeEeccccccccC----ChhHHHHHHHh
Confidence 4432 46899999999997532222 233367899999999999863 23466678899
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
++|++++|.++... .-+|.++++|++||+++|.+...- .--+..+.++++|+.|++.+|+++.. -..+++.
T Consensus 344 e~LnLs~Nsi~~l~----e~af~~lssL~~LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I----~krAfsg 414 (873)
T KOG4194|consen 344 EELNLSHNSIDHLA----EGAFVGLSSLHKLDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSI----PKRAFSG 414 (873)
T ss_pred hhhcccccchHHHH----hhHHHHhhhhhhhcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeec----chhhhcc
Confidence 99999999987322 236778899999999999876311 11225677899999999999999873 2368899
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHHHHHh
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKLMKS 459 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~ 459 (472)
+..|+.|+|.+|.|... =+.++..+ .|++|.+..-. +-+=.+..+.+++..
T Consensus 415 l~~LE~LdL~~NaiaSI----q~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASI----QPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred CcccceecCCCCcceee----cccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 99999999999988774 36677776 88888876544 333344566666653
|
|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-24 Score=209.08 Aligned_cols=349 Identities=19% Similarity=0.238 Sum_probs=238.9
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+|.....++.++.|.|..-.+. .+|+-+..+.+|++|.+.+|.+. .+. --+..+|.|+.+.+..|.+.+.
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~---~vh--GELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLI---SVH--GELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CchhHHHhhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhH---hhh--hhhccchhhHHHhhhccccccC
Confidence 3555666777777766554433 67888888888888888888753 222 3456778888888888888777
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 161 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~ 161 (472)
| +|.-+..+..|..|||+.|.+. ++|..+..-+++-+|++++|+|... |..++-. +..|..|.+..
T Consensus 94 G---iP~diF~l~dLt~lDLShNqL~-----EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfin---LtDLLfLDLS~-- 159 (1255)
T KOG0444|consen 94 G---IPTDIFRLKDLTILDLSHNQLR-----EVPTNLEYAKNSIVLNLSYNNIETI-PNSLFIN---LTDLLFLDLSN-- 159 (1255)
T ss_pred C---CCchhcccccceeeecchhhhh-----hcchhhhhhcCcEEEEcccCccccC-CchHHHh---hHhHhhhcccc--
Confidence 4 6777778888889999988887 4788888888888899998887532 3322221 22222222211
Q ss_pred CCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh
Q psy3611 162 GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241 (472)
Q Consensus 162 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 241 (472)
+ ....+.++ ++.+..|+.|.+++|.+...-
T Consensus 160 N-------------------------------------------------rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 160 N-------------------------------------------------RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred c-------------------------------------------------hhhhcCHH-HHHHhhhhhhhcCCChhhHHH
Confidence 1 11112222 345678889999998874332
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
+..+ +.+++|.+|++++..=| ... ++..+-.+.+|..+|+|.|.+.. +|+.+-..+
T Consensus 190 LrQL------PsmtsL~vLhms~TqRT---l~N----------~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~ 245 (1255)
T KOG0444|consen 190 LRQL------PSMTSLSVLHMSNTQRT---LDN----------IPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLR 245 (1255)
T ss_pred HhcC------ccchhhhhhhcccccch---hhc----------CCCchhhhhhhhhccccccCCCc-----chHHHhhhh
Confidence 2222 33457778888775422 112 22333334678899999998884 888888899
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|++++|+|+. +......+.+|++|++++|+++ .+++++.+++.|+.|.+.+|.++-+| +|..+
T Consensus 246 ~LrrLNLS~N~ite-----L~~~~~~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~FeG---iPSGI 312 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITE-----LNMTEGEWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLTFEG---IPSGI 312 (1255)
T ss_pred hhheeccCcCceee-----eeccHHHHhhhhhhccccchhc-----cchHHHhhhHHHHHHHhccCcccccC---Cccch
Confidence 99999999999873 3334445678899999999887 37788888899999999888887666 67777
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++.+|+.+...+|.+.- .|+++..|..|+.|.++.|.+- .+++++--++.|..||+..|
T Consensus 313 GKL~~Levf~aanN~LEl-----VPEglcRC~kL~kL~L~~NrLi-----TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLEL-----VPEGLCRCVKLQKLKLDHNRLI-----TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhhhhHHHHhhcccccc-----CchhhhhhHHHHHhccccccee-----echhhhhhcCCcceeeccCC
Confidence 777788888888777765 5777777888888888877742 13444444677777777654
|
|
| >KOG0444|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-23 Score=200.17 Aligned_cols=326 Identities=22% Similarity=0.345 Sum_probs=179.6
Q ss_pred ChHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 1 ~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
|+|+-+++|.+|++|.+.+|++. .+..-++.+|.|+.+++..|.+...|. | ..+.++.-|+.||||.|.+..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGi-P--~diF~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGI-P--TDIFRLKDLTILDLSHNQLRE 117 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCC-C--chhcccccceeeecchhhhhh
Confidence 57888899999999999999776 355567777888888888887765554 3 345667788888888887763
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh-hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
.|..+.+.+++-.|+|++|+|.. +|..+ -++.-|-.||+++|.+..- |.. ++.+..|++|.+..
T Consensus 118 -----vP~~LE~AKn~iVLNLS~N~Iet-----IPn~lfinLtDLLfLDLS~NrLe~L-PPQ----~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 118 -----VPTNLEYAKNSIVLNLSYNNIET-----IPNSLFINLTDLLFLDLSNNRLEML-PPQ----IRRLSMLQTLKLSN 182 (1255)
T ss_pred -----cchhhhhhcCcEEEEcccCcccc-----CCchHHHhhHhHhhhccccchhhhc-CHH----HHHHhhhhhhhcCC
Confidence 56666667778888888887763 44333 3445566667777755321 111 22233333333322
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
..-. .....-+..+++|+.|.+++.+-+-
T Consensus 183 NPL~---------------------------------------------------hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 183 NPLN---------------------------------------------------HFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred Chhh---------------------------------------------------HHHHhcCccchhhhhhhcccccchh
Confidence 1000 0000000112334444444433211
Q ss_pred hhH-HHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh
Q psy3611 240 IGV-EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318 (472)
Q Consensus 240 ~~~-~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 318 (472)
... .++.++ .+|+.++++.|.++. ++..+.+ +++|+.|++|+|.++. +.....
T Consensus 212 ~N~Ptsld~l------~NL~dvDlS~N~Lp~-----vPecly~----------l~~LrrLNLS~N~ite-----L~~~~~ 265 (1255)
T KOG0444|consen 212 DNIPTSLDDL------HNLRDVDLSENNLPI-----VPECLYK----------LRNLRRLNLSGNKITE-----LNMTEG 265 (1255)
T ss_pred hcCCCchhhh------hhhhhccccccCCCc-----chHHHhh----------hhhhheeccCcCceee-----eeccHH
Confidence 111 111111 255556666555541 1122221 2455666666665553 333333
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
...+|+.|++++|+++ .++.++..++.|++|.+.+|+++-+| ++..++++..|+.+..++|.+.- +|
T Consensus 266 ~W~~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LEl-----VP 332 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLEL-----VP 332 (1255)
T ss_pred HHhhhhhhccccchhc-----cchHHHhhhHHHHHHHhccCcccccC---CccchhhhhhhHHHHhhcccccc-----Cc
Confidence 4445666666666655 45556666666666666666655444 23455555566666666555532 45
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
..++.|..|+.|.|+.|++-+ +|+++.-++.|+.|++..|+
T Consensus 333 EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhHHHHHhcccccceee-----chhhhhhcCCcceeeccCCc
Confidence 555666666666666665444 56666666666666666654
|
|
| >KOG0618|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-21 Score=195.24 Aligned_cols=397 Identities=20% Similarity=0.190 Sum_probs=222.5
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+.+++-+|+.|+|++|.+.. +|..+...++|+.|+++.|.+ ...| ....++++|++++|.+|.+.
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~-----fp~~it~l~~L~~ln~s~n~i---~~vp--~s~~~~~~l~~lnL~~n~l~----- 104 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISS-----FPIQITLLSHLRQLNLSRNYI---RSVP--SSCSNMRNLQYLNLKNNRLQ----- 104 (1081)
T ss_pred HhhheeeeEEeecccccccc-----CCchhhhHHHHhhcccchhhH---hhCc--hhhhhhhcchhheeccchhh-----
Confidence 44455567788887777663 455566667777788877776 3344 34667777888888777665
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC-cCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN-QFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
.+|..+..+++|++|+++.|.++. +|.-+..+.....+..++| .+.. +.+. ..+...+..+...+.
T Consensus 105 ~lP~~~~~lknl~~LdlS~N~f~~-----~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~---~ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSFNHFGP-----IPLVIEVLTAEEELAASNNEKIQR-----LGQT---SIKKLDLRLNVLGGS 171 (1081)
T ss_pred cCchhHHhhhcccccccchhccCC-----CchhHHhhhHHHHHhhhcchhhhh-----hccc---cchhhhhhhhhcccc
Confidence 466677777788888888777764 3333444444444444444 1100 0000 001111222222222
Q ss_pred CCccccchhh-hcc---cCC-cccc----------CCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCccc
Q psy3611 164 CSDEEQDEES-EEE---NDS-DAEG----------DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLV 228 (472)
Q Consensus 164 ~~~~i~~~~~-~~~---~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 228 (472)
+..++..... .+. ... .... ....+.+++...+.....-.-.+... .......+.+|+
T Consensus 172 ~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-------~~~~~p~p~nl~ 244 (1081)
T KOG0618|consen 172 FLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-------TLDVHPVPLNLQ 244 (1081)
T ss_pred hhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-------eeccccccccce
Confidence 2222211111 000 000 0000 00111111111111100000001100 111122347899
Q ss_pred EEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCCh--------hHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 229 ELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGI--------TGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 229 ~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~--------~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+++++.+.++... +++.. |++|+.++..+|+++. ..+..+.-+..+...+++......+|++|++
T Consensus 245 ~~dis~n~l~~lp-~wi~~------~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGA------CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred eeecchhhhhcch-HHHHh------cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 9999999886665 55543 6799999999999752 2223444455555666777777889999999
Q ss_pred CCCCCChhhHHHHHHHHh--------------------------cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEE
Q psy3611 301 GRNRLENEGAKMLAAVFK--------------------------KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~--------------------------~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 354 (472)
..|.+.. +|..+. ....|+.|.+.+|.+++.. ...+.+.++|+.|
T Consensus 318 ~~N~L~~-----lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c----~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 318 QSNNLPS-----LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC----FPVLVNFKHLKVL 388 (1081)
T ss_pred hhccccc-----cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc----hhhhccccceeee
Confidence 9998764 222110 1124555666677777654 3456677888888
Q ss_pred EccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCc
Q psy3611 355 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 434 (472)
Q Consensus 355 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 434 (472)
+|++|.+..--. ..+.+++.|++|+++||.++. ++.....++.|+.|...+|.+.. +| .+.+.+.
T Consensus 389 hLsyNrL~~fpa----s~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~-----fP-e~~~l~q 453 (1081)
T KOG0618|consen 389 HLSYNRLNSFPA----SKLRKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS-----FP-ELAQLPQ 453 (1081)
T ss_pred eecccccccCCH----HHHhchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee-----ch-hhhhcCc
Confidence 888887762111 456677788888888888876 66666666777777777776665 45 5566677
Q ss_pred ccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 435 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 435 L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
|+.+|++.|.++......-. + -|+|++||+++|
T Consensus 454 L~~lDlS~N~L~~~~l~~~~---p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEAL---P-SPNLKYLDLSGN 486 (1081)
T ss_pred ceEEecccchhhhhhhhhhC---C-CcccceeeccCC
Confidence 77777777776654333222 1 167777777765
|
|
| >KOG0472|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-21 Score=174.24 Aligned_cols=341 Identities=22% Similarity=0.279 Sum_probs=226.6
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+|+-++.+..|+.|+|+.|.+. .+| .|.+|..|+++.++.|.+ ..++. +....++++.+||++.|+++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-----~lP-ef~gcs~L~Elh~g~N~i---~~lpa-e~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-----FLP-EFPGCSLLKELHVGENQI---EMLPA-EHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-----cCC-CCCccHHHHHHHhcccHH---HhhHH-HHhcccccceeeecccccccc-
Confidence 3455666777777777777776 355 577788888888888877 55553 566788999999999999984
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchh---hHHhhhc
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM---AAALVLE 158 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~---l~~L~~~ 158 (472)
.|+.+.-+++|++||+++|.++. ++..++++ +|+.|-+.||.+.. +.+-+-..+. +++|.-.
T Consensus 267 ----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrT-----iRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 267 ----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRT-----IRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred ----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHH-----HHHHHHcccHHHHHHHHHHh
Confidence 56666778999999999999995 88899988 99999999997642 1111111111 1222210
Q ss_pred cCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCC
Q psy3611 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238 (472)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 238 (472)
.... ++.. -+.....+.+...+.+.+ .......+.|++++-.++
T Consensus 332 ~~~d----glS~----se~~~e~~~t~~~~~~~~----------------------------~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 332 IKDD----GLSQ----SEGGTETAMTLPSESFPD----------------------------IYAIITTKILDVSDKQLT 375 (565)
T ss_pred hccC----CCCC----CcccccccCCCCCCcccc----------------------------hhhhhhhhhhcccccccc
Confidence 0000 0000 000000000000000000 001146677888888887
Q ss_pred hhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh
Q psy3611 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318 (472)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 318 (472)
....+-|... + -.-+..++++.|++.. +++.+.... .-++.++++.|.++ +.+..++
T Consensus 376 ~VPdEVfea~-~---~~~Vt~VnfskNqL~e-----lPk~L~~lk---------elvT~l~lsnn~is-----fv~~~l~ 432 (565)
T KOG0472|consen 376 LVPDEVFEAA-K---SEIVTSVNFSKNQLCE-----LPKRLVELK---------ELVTDLVLSNNKIS-----FVPLELS 432 (565)
T ss_pred cCCHHHHHHh-h---hcceEEEecccchHhh-----hhhhhHHHH---------HHHHHHHhhcCccc-----cchHHHH
Confidence 7766555432 1 1137888999988642 222221111 12455667777776 4677888
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
++++|..|++++|.+. .++..+++...|+.|++++|.+. .+++.+-....++.+-.++|.++... +
T Consensus 433 ~l~kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr-----~lP~~~y~lq~lEtllas~nqi~~vd----~ 498 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFR-----MLPECLYELQTLETLLASNNQIGSVD----P 498 (565)
T ss_pred hhhcceeeecccchhh-----hcchhhhhhhhhheecccccccc-----cchHHHhhHHHHHHHHhccccccccC----h
Confidence 9999999999999887 56777778888999999999886 24455545556677777778887642 2
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
..+..+.+|..||+.+|.+.. +|..++++++|++|.++||+|.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~-----IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQ-----IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchhh-----CChhhccccceeEEEecCCccC
Confidence 346778999999999999887 7999999999999999999985
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=148.06 Aligned_cols=225 Identities=36% Similarity=0.418 Sum_probs=182.4
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+-.|++|+.++++.|.++....+.+.++++.. +.|+.|.+++|.+++.+...+++++...... ++...-|.|+.+..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~--t~l~HL~l~NnGlGp~aG~rigkal~~la~n-KKaa~kp~Le~vic 164 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSS--TDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-KKAADKPKLEVVIC 164 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcC--CCceeEEeecCCCCccchhHHHHHHHHHHHH-hhhccCCCceEEEe
Confidence 45689999999999999999999999998755 5899999999999998888888776655432 33445578999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCC
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 379 (472)
..|++...........+..-.+|+.+.+..|.|..+|+..+. ..+..+.+|+.||+.+|.++..|...++.+++.++.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 999998766665555555556999999999999999987764 4566788999999999999999999999999999999
Q ss_pred cEEEcCCCCCChHHHHHHHHHhh--cCCCCCEEECcCCCCCchhHHH--HHHHH-hcCCcccEEEccCCCCChh
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLD--LVKAM-KNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~--l~~~l-~~~~~L~~L~l~~n~i~~~ 448 (472)
+.|.++.|-++..|+..+...+. ..++|..|...+|.+....+.. +.... ...|-|..|.+.+|.+...
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 99999999999999988887765 4589999999999765443322 33333 2566788888899988653
|
|
| >KOG4308|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=170.84 Aligned_cols=373 Identities=26% Similarity=0.332 Sum_probs=241.1
Q ss_pred CCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcC-CcccEEECcCCccCcchHHHHHHHh
Q psy3611 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 40 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
+.++++.+|.+.+.+...++.++..+++|..|++++|.+++++...+++.+... ..+++|.+..|.++..|...+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555566666655555555555556666666666666666665555555555554 4555555556666665555566655
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHh----chhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCC
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKS----FGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 194 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~----~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (472)
..+..++.++++.|.+...+...+...++. ...++.|....+.-.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t------------------------------- 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT------------------------------- 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC-------------------------------
Confidence 555566666666655554444444444432 222233322221100
Q ss_pred CcccccccccCCCCcccccchhhhhhhhcCCc-ccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHH
Q psy3611 195 HSHNASNQSHNNSNQSHNTSNQSHMSLKTGAR-LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273 (472)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~ 273 (472)
...+..+. ..+...+. +.++++..|.+.+.++..+...+.... +.+++++++.|.+++.+..
T Consensus 218 ---------------~~~c~~l~-~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~-~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 218 ---------------SSSCALLD-EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLS-ETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred ---------------hHHHHHHH-HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccc-hhhhhhhhhcCCccccchH
Confidence 00000111 11122233 666888888888778888887776554 3678888888888888888
Q ss_pred HHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHH-HHHHHHHhcCCCcc
Q psy3611 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGI-TALSDAFEENKNLR 352 (472)
Q Consensus 274 ~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~l~~~~~L~ 352 (472)
.+++.+..+ +.++.+.++.|.+.+.+...+.+.......+.++.+.++.....+. ..++........+.
T Consensus 281 ~L~~~l~~~----------~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (478)
T KOG4308|consen 281 DLAEVLVSC----------RQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLS 350 (478)
T ss_pred HHHHHHhhh----------HHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhH
Confidence 888877664 5788888888888888877777777777777777777655443332 23333333333445
Q ss_pred EEEccCCCCCcccHHHHHHHhcCCCC-CcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhc
Q psy3611 353 HLNLNDNTITYKGAIPLGQALSKLPS-LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 431 (472)
Q Consensus 353 ~L~l~~n~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 431 (472)
...++++...+++...+.......+. +..+++..+.+...+...++..+..+..++.++++.|...++++..+......
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~ 430 (478)
T KOG4308|consen 351 ELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSR 430 (478)
T ss_pred HHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhh
Confidence 55666666666666555555555444 78888888888888887788888888999999999998888888888887776
Q ss_pred CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCC
Q psy3611 432 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 432 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 470 (472)
+..++.+.++.|+++..+.....+.....+.........
T Consensus 431 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (478)
T KOG4308|consen 431 NGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRG 469 (478)
T ss_pred cccchhhhhccChhhhcchHHHHHHHhcCCCcceeeccc
Confidence 668999999999998888888888888788777665543
|
|
| >KOG0472|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-19 Score=163.06 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=55.7
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch------------------hHHHH-HHHHhc
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ------------------GGLDL-VKAMKN 431 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~------------------~~~~l-~~~l~~ 431 (472)
..++..++|..|++++|.+.+ +|..++..-.|+.++++.|++..- .++++ +.++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred HHHHhhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 344455555566665555544 455555555555555555544320 00012 345777
Q ss_pred CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 432 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 432 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+.+|..||+.+|.+ +.++..+..+++|++|++++|
T Consensus 504 m~nL~tLDL~nNdl-----q~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDL-----QQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhcceeccCCCch-----hhCChhhccccceeEEEecCC
Confidence 88888899988765 456667778999999999876
|
|
| >KOG4308|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-17 Score=160.24 Aligned_cols=377 Identities=27% Similarity=0.343 Sum_probs=297.1
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccC-CCCcEEeccCccccchhHHHHHHHh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~-~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+..+.|.+|.+.+.+...+...+..+++|..|++++|.+++.+...++..+... ..+++|++..|.+++++...++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 778899999999999999999999999999999999999988888888888776 7888899999999999999999999
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhh----CCCccEEEecCCcCChhhHHHHHHHHHhchh-hHHhhhccCCCCCC
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKN----KTKLKQINVSENQFGEEGVEEMEKLMKSFGM-AAALVLEDDEGECS 165 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~----~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~-l~~L~~~~~~~~~~ 165 (472)
..+..++.++++.|.+...|...++..+.. ..++++|.+++|.++......+...+...+. +..+..... ...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n--~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN--KLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc--Ccc
Confidence 888999999999999888887778877775 6689999999999988877777777776666 333333221 111
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC-CcccEEeCCCCCCChhhHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG-ARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~ 244 (472)
+. .+..+ ...+..+ +.++.+++..|.+++.+...
T Consensus 247 d~--------------------------------------------g~~~L-~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 247 DV--------------------------------------------GVEKL-LPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred hH--------------------------------------------HHHHH-HHHhcccchhhhhhhhhcCCccccchHH
Confidence 11 11111 1222333 68899999999999999999
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhh-HHHHHHHHhcCCCc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEG-AKMLAAVFKKLKTL 323 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~~~~L 323 (472)
+++.+. .|+.++++.+++|.+++.+...+.+.+... ..+.++.+.++.....+ ...+.........+
T Consensus 282 L~~~l~--~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 349 (478)
T KOG4308|consen 282 LAEVLV--SCRQLEELSLSNNPLTDYGVELLLEALERK----------TPLLHLVLGGTGKGTRGGTSVLAEADAQRQLL 349 (478)
T ss_pred HHHHHh--hhHHHHHhhcccCccccHHHHHHHHHhhhc----------ccchhhhccccCccchhHHHHHHHHHHHhhhh
Confidence 999885 567999999999999999999998888875 46777888866655443 33344444444455
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCC-ccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKN-LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
.....+++...+.+...+.....+-+. +..+++..+.+...+...++..+...+.++.++++.|...++++..+.....
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~ 429 (478)
T KOG4308|consen 350 SELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLS 429 (478)
T ss_pred HHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhh
Confidence 555666677666665556655555443 7788888887777788888888899999999999999999888877777777
Q ss_pred cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 403 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
.+..++.+.++.|.++..|...+..+....+........+|.++.
T Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 430 RNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIGR 474 (478)
T ss_pred hcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCcccc
Confidence 667999999999999999999999999999999999999887753
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=131.07 Aligned_cols=237 Identities=19% Similarity=0.214 Sum_probs=194.1
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCC------hhHHHHHHHHHHhhcccCcCCCCCcceeE
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG------ITGCKLLSKALHDCYESSKKEGSPLALKV 297 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~------~~~~~~l~~~l~~~~~~~~~~~~~~~L~~ 297 (472)
...++++++++|.++..+++.++..++.. ++|+..+++.-..+ ......+.+++.. ||.|+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~--~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk----------cp~l~~ 96 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANV--RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK----------CPRLQK 96 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhh--cceeEeehhhhhhcccHHHHHHHHHHHHHHHhc----------CCccee
Confidence 57899999999999999999999998754 47888888764322 2333445555555 689999
Q ss_pred EEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhc---------CCCccEEEccCCCCCcccHHH
Q psy3611 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE---------NKNLRHLNLNDNTITYKGAIP 368 (472)
Q Consensus 298 L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~---------~~~L~~L~l~~n~l~~~~~~~ 368 (472)
.++|.|.++..-...+...+++...|++|.+++|.++..+-.++.+++.. -|.|+.++..+|++..-....
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 99999999988777788889999999999999999998766677755533 368999999999987633445
Q ss_pred HHHHhcCCCCCcEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 369 LGQALSKLPSLAILNLGDCLLKSAGASSIA-KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 369 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++..+.....|+.+.+..|.|..+|+..+. ..+..+++|+.|||+.|-++..|-+.++.++...+.|++|.+..|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 556677778999999999999999875553 4566789999999999999999988899999888899999999999999
Q ss_pred hHHHHHHHHHHh--CCceeEEecCCCC
Q psy3611 448 EGVEEMEKLMKS--FGMAAALVLEDDE 472 (472)
Q Consensus 448 ~~~~~l~~~l~~--~~~L~~L~l~~~~ 472 (472)
.|...+...+.+ .|+|..|..+|||
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhh
Confidence 999887776654 7889999999986
|
|
| >KOG0618|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-17 Score=165.83 Aligned_cols=326 Identities=20% Similarity=0.211 Sum_probs=204.9
Q ss_pred EeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCC
Q psy3611 15 VEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 94 (472)
Q Consensus 15 L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~ 94 (472)
|+|++|.+.. ..+..+++|+.|....|.+. ...-..++++.|+.+.|.++... ......
T Consensus 183 ldLr~N~~~~-------~dls~~~~l~~l~c~rn~ls--------~l~~~g~~l~~L~a~~n~l~~~~------~~p~p~ 241 (1081)
T KOG0618|consen 183 LDLRYNEMEV-------LDLSNLANLEVLHCERNQLS--------ELEISGPSLTALYADHNPLTTLD------VHPVPL 241 (1081)
T ss_pred eecccchhhh-------hhhhhccchhhhhhhhcccc--------eEEecCcchheeeeccCcceeec------cccccc
Confidence 6666665442 22445566666666666552 11123467888888888887421 122357
Q ss_pred cccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhh
Q psy3611 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 174 (472)
Q Consensus 95 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~ 174 (472)
+|++++++.+.++. +++++..+.+++.+++.+|.++ +.+..+.. .++++.+......-. .++.
T Consensus 242 nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~----~~~L~~l~~~~nel~---yip~---- 304 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLV-ALPLRISR----ITSLVSLSAAYNELE---YIPP---- 304 (1081)
T ss_pred cceeeecchhhhhc-----chHHHHhcccceEecccchhHH-hhHHHHhh----hhhHHHHHhhhhhhh---hCCC----
Confidence 89999999999985 7899999999999999999884 33443433 445544443222110 1111
Q ss_pred cccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCC
Q psy3611 175 EENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC 254 (472)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~ 254 (472)
.....+.|+.|++..|.+.......+.-. .
T Consensus 305 ---------------------------------------------~le~~~sL~tLdL~~N~L~~lp~~~l~v~-----~ 334 (1081)
T KOG0618|consen 305 ---------------------------------------------FLEGLKSLRTLDLQSNNLPSLPDNFLAVL-----N 334 (1081)
T ss_pred ---------------------------------------------cccccceeeeeeehhccccccchHHHhhh-----h
Confidence 12335789999999998855443222211 1
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
..++.|+.+.+++.... .... ...+.|..|.+.+|.+++. ..+.+....+|+.|++++|+++
T Consensus 335 ~~l~~ln~s~n~l~~lp--~~~e------------~~~~~Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLP--SYEE------------NNHAALQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred HHHHHHhhhhccccccc--cccc------------hhhHHHHHHHHhcCccccc----chhhhccccceeeeeecccccc
Confidence 14666676666654221 0000 1134577788888888875 4446667888888888888877
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~ 414 (472)
... +..+.+++.|+.|++++|+++ .+++.+..++.|++|...+|.+.. +| .+...++|+.+|++.
T Consensus 397 ~fp----as~~~kle~LeeL~LSGNkL~-----~Lp~tva~~~~L~tL~ahsN~l~~-----fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 397 SFP----ASKLRKLEELEELNLSGNKLT-----TLPDTVANLGRLHTLRAHSNQLLS-----FP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred cCC----HHHHhchHHhHHHhcccchhh-----hhhHHHHhhhhhHHHhhcCCceee-----ch-hhhhcCcceEEeccc
Confidence 332 345556778888888888877 366777788888888888888764 55 567778888888888
Q ss_pred CCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecC
Q psy3611 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE 469 (472)
Q Consensus 415 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 469 (472)
|.++... ++..... ++|++||++||.-.... .+.++.++.+..++++
T Consensus 462 N~L~~~~---l~~~~p~-p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 462 NNLSEVT---LPEALPS-PNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDIT 508 (1081)
T ss_pred chhhhhh---hhhhCCC-cccceeeccCCcccccc----hhhhHHhhhhhheecc
Confidence 8877641 3333322 78888888888632222 2334445555555544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-16 Score=160.72 Aligned_cols=265 Identities=20% Similarity=0.245 Sum_probs=161.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
..-..|+++++.++. +|..+. ++|+.|++.+|.++. +| ...++|++|++++|.++. ++..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~---LP-----~lp~~Lk~LdLs~N~Lts-----LP~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTS---LP-----ALPPELRTLEVSGNQLTS-----LPVL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCC---CC-----CCCCCCcEEEecCCccCc-----ccCc
Confidence 345677787777763 555443 467888888877642 23 124678888888887774 3322
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
.++|++|++++|.+.. ++.. ...|+.|++++|.+..- |
T Consensus 261 ---p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~L-------------------------------P 298 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTSL-------------------------------P 298 (788)
T ss_pred ---ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCccccc-------------------------------c
Confidence 3577788888877763 4432 24677777777766421 0
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
. ..++|++|++++|.+..... +
T Consensus 299 ~----------------------------------------------------~p~~L~~LdLS~N~L~~Lp~--l---- 320 (788)
T PRK15387 299 V----------------------------------------------------LPPGLQELSVSDNQLASLPA--L---- 320 (788)
T ss_pred c----------------------------------------------------cccccceeECCCCccccCCC--C----
Confidence 0 01567777887777743211 1
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
+ .+|+.|++++|.++... .+ +.+|+.|++++|.+.. +|. ...+|+.|+++
T Consensus 321 --p--~~L~~L~Ls~N~L~~LP--~l----------------p~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls 370 (788)
T PRK15387 321 --P--SELCKLWAYNNQLTSLP--TL----------------PSGLQELSVSDNQLAS-----LPT---LPSELYKLWAY 370 (788)
T ss_pred --c--ccccccccccCcccccc--cc----------------ccccceEecCCCccCC-----CCC---CCcccceehhh
Confidence 1 25777777777765211 00 1357778888777764 333 13567777777
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCE
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 409 (472)
+|++.. ++.. ..+|+.|++++|.++. . +. ..+.|+.|++++|.+.. ++.. .+.|+.
T Consensus 371 ~N~L~~-----LP~l---~~~L~~LdLs~N~Lt~--L---P~---l~s~L~~LdLS~N~Lss-----IP~l---~~~L~~ 426 (788)
T PRK15387 371 NNRLTS-----LPAL---PSGLKELIVSGNRLTS--L---PV---LPSELKELMVSGNRLTS-----LPML---PSGLLS 426 (788)
T ss_pred cccccc-----Cccc---ccccceEEecCCcccC--C---CC---cccCCCEEEccCCcCCC-----CCcc---hhhhhh
Confidence 777762 2221 2457778888777762 1 11 13467778888877764 3321 245677
Q ss_pred EECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 410 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
|++++|.++. +|..+..++.|+.|++++|++++.....+
T Consensus 427 L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCcccc-----cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7777777775 67777777778888888887776555544
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-16 Score=172.22 Aligned_cols=347 Identities=14% Similarity=0.134 Sum_probs=202.8
Q ss_pred HHHhhhcCCccEEeccCCCcchh-h-HHHHHHhhhcCC-CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcccc
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHV-G-ITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 79 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~-~-~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~ 79 (472)
.++|.++++|+.|.+..+..... . ...+|..+..+| +|+.|.+.++.+ ..+| ..+ ...+|++|+++++.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l---~~lP--~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL---RCMP--SNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC---CCCC--CcC-CccCCcEEECcCcccc
Confidence 36799999999999976542210 0 013455555553 688888888765 3444 233 3578888988888776
Q ss_pred chhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 80 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 80 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
. ++..+..+++|+.|+++++.... .++ .+..+++|+.|++++|..-...+.. +..+++|+.|.+..
T Consensus 625 ~-----L~~~~~~l~~Lk~L~Ls~~~~l~----~ip-~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~ 690 (1153)
T PLN03210 625 K-----LWDGVHSLTGLRNIDLRGSKNLK----EIP-DLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSR 690 (1153)
T ss_pred c-----cccccccCCCCCEEECCCCCCcC----cCC-ccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCC
Confidence 3 55556678888888888764322 233 3566788888888887544443333 33466666665554
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
+.. ...+|.. ..+..++.+++..- + .... .+ ....+|++|+++++.+..
T Consensus 691 c~~--L~~Lp~~-----------i~l~sL~~L~Lsgc----------~----~L~~-~p---~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 691 CEN--LEILPTG-----------INLKSLYRLNLSGC----------S----RLKS-FP---DISTNISWLDLDETAIEE 739 (1153)
T ss_pred CCC--cCccCCc-----------CCCCCCCEEeCCCC----------C----Cccc-cc---cccCCcCeeecCCCcccc
Confidence 321 1112210 01111111111100 0 0000 00 012466777777766532
Q ss_pred hhHHHHHHHHhccCCCcceEEEeeCCCCChh--HHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHH
Q psy3611 240 IGVEGLADLLRSSCCFALEELKLNNNGLGIT--GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 317 (472)
Q Consensus 240 ~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~--~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 317 (472)
... . ..+++|++|.+.++..... ....+.. .....+++|+.|++++|..... +|..+
T Consensus 740 lP~-----~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~---------~~~~~~~sL~~L~Ls~n~~l~~----lP~si 798 (1153)
T PLN03210 740 FPS-----N---LRLENLDELILCEMKSEKLWERVQPLTP---------LMTMLSPSLTRLFLSDIPSLVE----LPSSI 798 (1153)
T ss_pred ccc-----c---ccccccccccccccchhhccccccccch---------hhhhccccchheeCCCCCCccc----cChhh
Confidence 211 0 1234666666655332100 0000000 0112246789999988865543 77788
Q ss_pred hcCCCccEEeCCCCC-CChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 318 KKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
.++++|+.|++++|. +. .++..+ .+++|+.|++++|.... .++. ..++|+.|++++|.+..
T Consensus 799 ~~L~~L~~L~Ls~C~~L~-----~LP~~~-~L~sL~~L~Ls~c~~L~----~~p~---~~~nL~~L~Ls~n~i~~----- 860 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLE-----TLPTGI-NLESLESLDLSGCSRLR----TFPD---ISTNISDLNLSRTGIEE----- 860 (1153)
T ss_pred hCCCCCCEEECCCCCCcC-----eeCCCC-CccccCEEECCCCCccc----cccc---cccccCEeECCCCCCcc-----
Confidence 889999999998875 33 334333 57789999999875321 1111 23578899999988875
Q ss_pred HHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 397 IAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
+|..+..+++|+.|++++| .+.. ++..+..++.|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 7777888899999999876 5554 55666677888888888774
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=168.99 Aligned_cols=363 Identities=15% Similarity=0.152 Sum_probs=211.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccc--hHHHHHHhccC-CCCcEEeccCccccchhHHHHH
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKG--AIPLGQALSKL-PSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~l~~~-~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
..+.+.+.-..+.... .-+.+|..+++|+.|.+..+.+.... ...+...+..+ ++|+.|++.++++.. +|
T Consensus 533 ~v~~i~l~~~~~~~~~--i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP 605 (1153)
T PLN03210 533 KVLGITLDIDEIDELH--IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MP 605 (1153)
T ss_pred eeeEEEeccCccceee--ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CC
Confidence 3444444433333211 23566889999999999765432111 11111344444 479999999998764 44
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
..+ ...+|+.|+++++.+.. ++..+..+++|+.|+++++..-...+. +...+.|+.|.+..+..- ..
T Consensus 606 ~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L--~~ 672 (1153)
T PLN03210 606 SNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSL--VE 672 (1153)
T ss_pred CcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCc--cc
Confidence 443 46899999999998873 667777899999999998753333232 333667777766554321 12
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
+|. ....+.++..+++..-. ....+... ..+++|++|++++|..... +..
T Consensus 673 lp~----------si~~L~~L~~L~L~~c~--------------~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~----~p~ 722 (1153)
T PLN03210 673 LPS----------SIQYLNKLEDLDMSRCE--------------NLEILPTG--INLKSLYRLNLSGCSRLKS----FPD 722 (1153)
T ss_pred cch----------hhhccCCCCEEeCCCCC--------------CcCccCCc--CCCCCCCEEeCCCCCCccc----ccc
Confidence 222 01112222222221100 00000000 0346777888877754111 111
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChh--hHHHH-HHHHhcCCCcc
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE--GAKML-AAVFKKLKTLE 324 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l-~~~~~~~~~L~ 324 (472)
. ..+|++|+++++.+... +. ...+++|+.|++.++....- ....+ +.....+++|+
T Consensus 723 ~-----~~nL~~L~L~~n~i~~l-----P~-----------~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 723 I-----STNISWLDLDETAIEEF-----PS-----------NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred c-----cCCcCeeecCCCccccc-----cc-----------cccccccccccccccchhhccccccccchhhhhccccch
Confidence 1 13678888877776421 11 01245677777765332100 00001 11223457899
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcC
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 404 (472)
.|++++|... ..++..+.++++|+.|++++|..-. .++..+ .+++|+.|++++|..... ++. ..
T Consensus 782 ~L~Ls~n~~l----~~lP~si~~L~~L~~L~Ls~C~~L~----~LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~ 845 (1153)
T PLN03210 782 RLFLSDIPSL----VELPSSIQNLHKLEHLEIENCINLE----TLPTGI-NLESLESLDLSGCSRLRT----FPD---IS 845 (1153)
T ss_pred heeCCCCCCc----cccChhhhCCCCCCEEECCCCCCcC----eeCCCC-CccccCEEECCCCCcccc----ccc---cc
Confidence 9999998643 1457778889999999999875321 133332 578999999999864332 332 23
Q ss_pred CCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHHHHHhCCceeEEecCC
Q psy3611 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~ 470 (472)
++|+.|+|++|.+.. +|..+..+++|++|++++|+ +.. +......++.|+.+++++
T Consensus 846 ~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 846 TNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCC
Confidence 689999999999986 78889999999999999864 432 122234466677777654
|
syringae 6; Provisional |
| >KOG4341|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=133.20 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=148.3
Q ss_pred hcCCcccEEeCCCCCC-ChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 222 KTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
+++..++++.+.+|.- ..+.....+ ..|+.+.++++..|. ++|.+...++.. |..|+.++
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~-----~~~~~i~~lnl~~c~~lTD~~~~~i~~~-------------c~~lq~l~ 300 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAA-----AYCLEILKLNLQHCNQLTDEDLWLIACG-------------CHALQVLC 300 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHh-----ccChHhhccchhhhccccchHHHHHhhh-------------hhHhhhhc
Confidence 3445566665555533 333323222 245567777765544 788887776665 34578888
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC-CChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCC
Q psy3611 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 300 l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 378 (472)
.+++.-.+ ...+.....++.+|+.+-+..|+ +++.|+..+.. +++.|+.+++..+...-++ .+...-..++.
T Consensus 301 ~s~~t~~~--d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~ 373 (483)
T KOG4341|consen 301 YSSCTDIT--DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPR 373 (483)
T ss_pred ccCCCCCc--hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCch
Confidence 88765432 22344445578999999999985 77777665554 5789999999999776444 35555567999
Q ss_pred CcEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHHH
Q psy3611 379 LAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEKL 456 (472)
Q Consensus 379 L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~ 456 (472)
|+.|.++.| .++++|++.+...-.....|+.+.++++....+ ...+.+..|++|+.+++.+++ ++..++..+..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~- 449 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD---ATLEHLSICRNLERIELIDCQDVTKEAISRFAT- 449 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH---HHHHHHhhCcccceeeeechhhhhhhhhHHHHh-
Confidence 999999998 577888877777667779999999999965444 267888999999999998886 66565555554
Q ss_pred HHhCCceeEE
Q psy3611 457 MKSFGMAAAL 466 (472)
Q Consensus 457 l~~~~~L~~L 466 (472)
++|+++..
T Consensus 450 --~lp~i~v~ 457 (483)
T KOG4341|consen 450 --HLPNIKVH 457 (483)
T ss_pred --hCccceeh
Confidence 56666543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-14 Score=150.85 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 67 ~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+|+.|++++|.++. ++..+. ++|++|++++|.++. ++..+. .+|+.|++++|.+.
T Consensus 200 ~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 200 QITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred CCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccC
Confidence 55666666665553 222221 356666666665552 333322 35666666665553
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=149.76 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|+.|++.+|.++. +|. ..++|++|++++|.++. +| . ..++|+.|++++|.+.. ++..
T Consensus 222 ~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lts---LP--~---lp~sL~~L~Ls~N~L~~-----Lp~l 280 (788)
T PRK15387 222 AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTS---LP--V---LPPGLLELSIFSNPLTH-----LPAL 280 (788)
T ss_pred cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccCc---cc--C---cccccceeeccCCchhh-----hhhc
Confidence 479999999998884 443 25899999999998852 23 1 23689999999998874 4543
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
.+.|+.|++++|.++. ++.. .++|+.|++++|.+..
T Consensus 281 ---p~~L~~L~Ls~N~Lt~-----LP~~---p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 281 ---PSGLCKLWIFGNQLTS-----LPVL---PPGLQELSVSDNQLAS 316 (788)
T ss_pred ---hhhcCEEECcCCcccc-----cccc---ccccceeECCCCcccc
Confidence 3678999999999984 4532 4689999999998763
|
|
| >KOG4341|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-14 Score=131.91 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=97.0
Q ss_pred CCcccEEeCCCCCC-ChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC
Q psy3611 224 GARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301 (472)
Q Consensus 224 ~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~ 301 (472)
+..+.++++..+.. ++.+.-.++.+ |..|+.|+.+++. +++.....+.+. +.+|+.+.+.
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~-----c~~lq~l~~s~~t~~~d~~l~aLg~~-------------~~~L~~l~l~ 328 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACG-----CHALQVLCYSSCTDITDEVLWALGQH-------------CHNLQVLELS 328 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhh-----hhHhhhhcccCCCCCchHHHHHHhcC-------------CCceEEEecc
Confidence 34444555444433 55443333332 3456666665544 344433333321 3566666666
Q ss_pred CCC-CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHHHHHHHhcCCCCC
Q psy3611 302 RNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 302 ~~~-l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L 379 (472)
+++ +++.|+..+ -.+++.|+.+++..+.....+ .+...-.+++.|+.+.++++. ++++|...+...-.....+
T Consensus 329 ~c~~fsd~~ft~l---~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 329 GCQQFSDRGFTML---GRNCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred ccchhhhhhhhhh---hcCChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 665 333333322 235566777777666554333 333333356667777777663 4555554444444445566
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEc
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINV 440 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l 440 (472)
..+.+++|....+. ..+.+..++.|+.+++-++ .++..+++.+.. ++|++++..+
T Consensus 404 ~~lEL~n~p~i~d~---~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~---~lp~i~v~a~ 459 (483)
T KOG4341|consen 404 EVLELDNCPLITDA---TLEHLSICRNLERIELIDCQDVTKEAISRFAT---HLPNIKVHAY 459 (483)
T ss_pred ceeeecCCCCchHH---HHHHHhhCcccceeeeechhhhhhhhhHHHHh---hCccceehhh
Confidence 77777777655443 3455566677777776655 455554333333 4455554433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.9e-14 Score=144.96 Aligned_cols=261 Identities=20% Similarity=0.246 Sum_probs=166.0
Q ss_pred CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHH
Q psy3611 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145 (472)
Q Consensus 66 ~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 145 (472)
.+...|+++++.++. +|..+ .+.|+.|++++|.++. ++..+. .+|++|++++|.+.. .+..+..
T Consensus 178 ~~~~~L~L~~~~Lts-----LP~~I--p~~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~~- 241 (754)
T PRK15370 178 NNKTELRLKILGLTT-----IPACI--PEQITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-IPATLPD- 241 (754)
T ss_pred cCceEEEeCCCCcCc-----CCccc--ccCCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-CChhhhc-
Confidence 356788888887774 34333 2578899999998884 454443 589999999887763 2222211
Q ss_pred HHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCC
Q psy3611 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGA 225 (472)
Q Consensus 146 l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (472)
.++.|.+....- ..+|. ....
T Consensus 242 -----~L~~L~Ls~N~L---~~LP~---------------------------------------------------~l~s 262 (754)
T PRK15370 242 -----TIQEMELSINRI---TELPE---------------------------------------------------RLPS 262 (754)
T ss_pred -----cccEEECcCCcc---CcCCh---------------------------------------------------hHhC
Confidence 222222221100 01111 0124
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCC
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 305 (472)
.|++|++++|.+.... ..+ .++|+.|++++|.++... .. + +++|+.|++++|.+
T Consensus 263 ~L~~L~Ls~N~L~~LP-~~l--------~~sL~~L~Ls~N~Lt~LP-----~~----------l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 263 ALQSLDLFHNKISCLP-ENL--------PEELRYLSVYDNSIRTLP-----AH----------L--PSGITHLNVQSNSL 316 (754)
T ss_pred CCCEEECcCCccCccc-ccc--------CCCCcEEECCCCccccCc-----cc----------c--hhhHHHHHhcCCcc
Confidence 7889999988885321 111 247999999999876321 10 0 13688888998888
Q ss_pred ChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcC
Q psy3611 306 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385 (472)
Q Consensus 306 ~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~ 385 (472)
.. ++..+ .++|+.|++++|.++. ++..+ .++|+.|++++|.+.. ++..+ .+.|+.|+++
T Consensus 317 t~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~-----LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 317 TA-----LPETL--PPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITV-----LPETL--PPTITTLDVS 375 (754)
T ss_pred cc-----CCccc--cccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCc-----CChhh--cCCcCEEECC
Confidence 74 44322 3689999999998873 33333 2689999999998872 22333 3689999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 386 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 386 ~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
+|.+.. ++..+. ..|+.|++++|.+.... ..++......+.+..+++.+|+++...++.+...
T Consensus 376 ~N~Lt~-----LP~~l~--~sL~~LdLs~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 376 RNALTN-----LPENLP--AALQIMQASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred CCcCCC-----CCHhHH--HHHHHHhhccCCcccCc-hhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 999885 454443 36888999999887510 1133344455788999999999987666655443
|
|
| >KOG4237|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-15 Score=137.14 Aligned_cols=208 Identities=17% Similarity=0.201 Sum_probs=118.7
Q ss_pred hhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 220 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
.++.+++|++|++++|.++.....+|... ..+++|.|..|++....-.++ .++..|+.|+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~------a~l~eL~L~~N~l~~v~~~~f--------------~~ls~L~tL~ 328 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGA------AELQELYLTRNKLEFVSSGMF--------------QGLSGLKTLS 328 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcch------hhhhhhhcCcchHHHHHHHhh--------------hccccceeee
Confidence 36677888888888888877766666654 268888888888753332222 1246788888
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChh-HHHHHHHHHhcC----------C-CccEEEccCCCCCcccHH
Q psy3611 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-GITALSDAFEEN----------K-NLRHLNLNDNTITYKGAI 367 (472)
Q Consensus 300 l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~l~~~----------~-~L~~L~l~~n~l~~~~~~ 367 (472)
+++|+++.. .|.+|.....|.+|++-.|.+... .+..+.+++.+. | .++.+.+++..+++-...
T Consensus 329 L~~N~it~~----~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~ 404 (498)
T KOG4237|consen 329 LYDNQITTV----APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG 404 (498)
T ss_pred ecCCeeEEE----ecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence 888888863 455666777888888877665432 233555555331 1 355666666654421100
Q ss_pred HHHHHhc-----CC----CCCcEEE-cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccE
Q psy3611 368 PLGQALS-----KL----PSLAILN-LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437 (472)
Q Consensus 368 ~l~~~l~-----~~----~~L~~L~-l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 437 (472)
-++... .+ +.+.++. .++..++ .+|..+. ....++.+.+|.++. ++.. ....| .
T Consensus 405 -~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-----~lp~~iP--~d~telyl~gn~~~~-----vp~~--~~~~l-~ 468 (498)
T KOG4237|consen 405 -GPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-----LLPRGIP--VDVTELYLDGNAITS-----VPDE--LLRSL-L 468 (498)
T ss_pred -CccccCCCCCCCCCCCcchhhhhHhhcccchh-----hcCCCCC--chhHHHhcccchhcc-----cCHH--HHhhh-h
Confidence 001110 01 1111111 0111111 1222222 344678888888876 4444 34566 7
Q ss_pred EEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 438 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 438 L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++++|+|..-.-.. |.....+.+|-|+||
T Consensus 469 ~dls~n~i~~Lsn~t----f~n~tql~tlilsyn 498 (498)
T KOG4237|consen 469 LDLSNNRISSLSNYT----FSNMTQLSTLILSYN 498 (498)
T ss_pred cccccCceehhhccc----ccchhhhheeEEecC
Confidence 899999876433333 334667888888886
|
|
| >KOG4237|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-13 Score=121.42 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcC-CccC
Q psy3611 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC-NEIS 107 (472)
Q Consensus 29 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~-~~i~ 107 (472)
.+|.-+ -+.-..++|..|.|+ .+|- .+|..+++|+.||||+|.|+.++. +++..+..+.+|.+-+ |.|+
T Consensus 60 eVP~~L--P~~tveirLdqN~I~---~iP~-~aF~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 60 EVPANL--PPETVEIRLDQNQIS---SIPP-GAFKTLHRLRRLDLSKNNISFIAP----DAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCcccC--CCcceEEEeccCCcc---cCCh-hhccchhhhceecccccchhhcCh----HhhhhhHhhhHHHhhcCCchh
Confidence 445443 245677788888874 3333 577888888888888888876433 4444455555554444 7777
Q ss_pred cchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 108 VQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 108 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+ --.+.+..+.+++.|.+.-|.+.
T Consensus 130 ~----l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 130 D----LPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred h----hhhhHhhhHHHHHHHhcChhhhc
Confidence 5 22334455666777766655554
|
|
| >KOG3207|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-12 Score=120.79 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=142.6
Q ss_pred EeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCC
Q psy3611 15 VEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 94 (472)
Q Consensus 15 L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~ 94 (472)
+.+++-++..-|...+...-++..+|+.+.|.++.....+.. .....|++++.|||+.|-+.. |..+++...+++
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp 172 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLP 172 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcc
Confidence 344455555566667777777778888888888876544432 245667888888888888765 556777777788
Q ss_pred cccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhh
Q psy3611 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 174 (472)
Q Consensus 95 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~ 174 (472)
+|+.|+++.|.+.......... ..++|+.|.++.|.++...+..+ +..+|.+..|.+....+.......
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~---~~~fPsl~~L~L~~N~~~~~~~~~----- 241 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWI---LLTFPSLEVLYLEANEIILIKATS----- 241 (505)
T ss_pred cchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHH---HHhCCcHHHhhhhcccccceecch-----
Confidence 8888888888765321112222 35678888888888886544433 444777766655433211111100
Q ss_pred cccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCC
Q psy3611 175 EENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC 254 (472)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~ 254 (472)
....+.|++|+|++|++-+....... ...
T Consensus 242 ----------------------------------------------~~i~~~L~~LdLs~N~li~~~~~~~~-----~~l 270 (505)
T KOG3207|consen 242 ----------------------------------------------TKILQTLQELDLSNNNLIDFDQGYKV-----GTL 270 (505)
T ss_pred ----------------------------------------------hhhhhHHhhccccCCccccccccccc-----ccc
Confidence 11236788888888887322211111 123
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
|.|..|+++.+.+++...-... +..+.-..++|+.|+++.|++.+. .....+....+|++|.+..+.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~--------s~~kt~~f~kL~~L~i~~N~I~~w---~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVE--------SLDKTHTFPKLEYLNISENNIRDW---RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCcc--------chhhhcccccceeeecccCccccc---cccchhhccchhhhhhccccccc
Confidence 6788888887776532211110 001112246777888887777432 12223445567777776666655
Q ss_pred h
Q psy3611 335 H 335 (472)
Q Consensus 335 ~ 335 (472)
.
T Consensus 340 ~ 340 (505)
T KOG3207|consen 340 K 340 (505)
T ss_pred c
Confidence 3
|
|
| >KOG2120|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-11 Score=106.00 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=29.1
Q ss_pred CCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 67 ~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.|+++|||...++-. .+-..++.+.+|+.|.+.++.+.| .++..++.+.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccc
Confidence 355555555444432 222334445555555555555555 34444555555555555544
|
|
| >KOG2120|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=106.00 Aligned_cols=200 Identities=18% Similarity=0.259 Sum_probs=139.2
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
.+||.|++++..++...+..+ + ++|..|+.|.+.+++++|..+..+++. .+|+.++++.+.
T Consensus 185 sRlq~lDLS~s~it~stl~~i---L--s~C~kLk~lSlEg~~LdD~I~~~iAkN--------------~~L~~lnlsm~s 245 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGI---L--SQCSKLKNLSLEGLRLDDPIVNTIAKN--------------SNLVRLNLSMCS 245 (419)
T ss_pred hhhHHhhcchhheeHHHHHHH---H--HHHHhhhhccccccccCcHHHHHHhcc--------------ccceeecccccc
Confidence 678899999888765544433 3 257789999999999888777666652 678999998764
Q ss_pred -CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC--CCcccHHHHHHHhcCCCCCcE
Q psy3611 305 -LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT--ITYKGAIPLGQALSKLPSLAI 381 (472)
Q Consensus 305 -l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~L~~ 381 (472)
++..+ +...+..|..|..|+++.|.+....++.+...+ -++|+.|+++++. +.+ ..+.....++|.|.+
T Consensus 246 G~t~n~---~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 246 GFTENA---LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVH 317 (419)
T ss_pred ccchhH---HHHHHHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhh---hHHHHHHHhCCceee
Confidence 44333 344567888999999999987765555554444 2578889998873 322 234445567899999
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHh
Q psy3611 382 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459 (472)
Q Consensus 382 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~ 459 (472)
||+++|.....+ .+.++.+++.|+.+.++.| .|... -.-.+...|+|.+|++.++ +++..++.+.+.+.+
T Consensus 318 LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRCY~i~p~----~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 318 LDLSDSVMLKND---CFQEFFKFNYLQHLSLSRCYDIIPE----TLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSH 388 (419)
T ss_pred eccccccccCch---HHHHHHhcchheeeehhhhcCCChH----HeeeeccCcceEEEEeccc-cCchHHHHHHHhCcc
Confidence 999988654444 5667777888999999877 45443 2334567789999998886 455677777665443
|
|
| >KOG3207|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-12 Score=116.44 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=37.0
Q ss_pred EEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcC
Q psy3611 70 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134 (472)
Q Consensus 70 ~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i 134 (472)
.+.+++-++...|++.++.-=++..+|+.+.|.++.+...+.. .....|++++.||++.|-+
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~ 158 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLF 158 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhH
Confidence 4445555555566666665545566677777777766654332 3445667777777776644
|
|
| >KOG0617|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-12 Score=105.29 Aligned_cols=178 Identities=29% Similarity=0.363 Sum_probs=126.9
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
...+++|-+++|.++... ..++++ .+|+.|++.+|+|.+. +..++++++|+.|+++-|
T Consensus 32 ~s~ITrLtLSHNKl~~vp-pnia~l------~nlevln~~nnqie~l---------------p~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP-PNIAEL------KNLEVLNLSNNQIEEL---------------PTSISSLPKLRILNVGMN 89 (264)
T ss_pred hhhhhhhhcccCceeecC-CcHHHh------hhhhhhhcccchhhhc---------------Chhhhhchhhhheecchh
Confidence 367788889999885443 445554 4789999999887532 334455678888888888
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
++.. +|..|..++-|+.|++.+|.+... .++..|..+.+|+-|.+++|.+. .++..++++++|+.|.
T Consensus 90 rl~~-----lprgfgs~p~levldltynnl~e~---~lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 90 RLNI-----LPRGFGSFPALEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILS 156 (264)
T ss_pred hhhc-----CccccCCCchhhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEe
Confidence 7763 777788888888888888888644 34555556778888888888765 2556677788899999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCC---cccEEEccCCCCC
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT---KLKQINVSENQFG 446 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~---~L~~L~l~~n~i~ 446 (472)
+..|.+.+ ++..++....|++|++++|+++. ++..+.+.. +-..+.+..|++-
T Consensus 157 lrdndll~-----lpkeig~lt~lrelhiqgnrl~v-----lppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 157 LRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV-----LPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eccCchhh-----CcHHHHHHHHHHHHhcccceeee-----cChhhhhhhhhhhHHHHhhhhCCCC
Confidence 88887765 78888888889999999998876 555444332 2223445556543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-10 Score=97.18 Aligned_cols=125 Identities=19% Similarity=0.291 Sum_probs=31.7
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
..++.|++.+|.+.. + +.+. .+.+|+.|++++|.|+.. +.+..++.|+.|++++|.++..+ +
T Consensus 19 ~~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~-----~ 81 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSIS-----E 81 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-C-----H
T ss_pred ccccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccc-----c
Confidence 445666666665552 1 1222 345566666666655521 23334555666666666555322 1
Q ss_pred Hh-cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEE
Q psy3611 372 AL-SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438 (472)
Q Consensus 372 ~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 438 (472)
.+ ..+|+|++|++++|.|.+.+. ...+..+++|+.|++.+|.+.....- =...+..+|+|+.|
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVL 145 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEE
T ss_pred chHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhhee
Confidence 11 234556666666665543211 13334455555555555554432110 11233445555555
|
|
| >KOG0617|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-12 Score=104.29 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=108.4
Q ss_pred HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC
Q psy3611 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321 (472)
Q Consensus 242 ~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~ 321 (472)
...+.+.-....+.+++.|.++.|+++ . .++.+..+.+|+.|++++|+++. +|..++.++
T Consensus 20 iSsf~~~~gLf~~s~ITrLtLSHNKl~-----~----------vppnia~l~nlevln~~nnqie~-----lp~~issl~ 79 (264)
T KOG0617|consen 20 ISSFEELPGLFNMSNITRLTLSHNKLT-----V----------VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLP 79 (264)
T ss_pred cccHhhcccccchhhhhhhhcccCcee-----e----------cCCcHHHhhhhhhhhcccchhhh-----cChhhhhch
Confidence 334444322233345666667776664 2 23333445677777777777764 777777777
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 401 (472)
+|+.|+++-|++. .++..|+..|-|+.||+..|.+.+.. ++.-+-.+..|+.|.+++|.+.- ++...
T Consensus 80 klr~lnvgmnrl~-----~lprgfgs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe~-----lp~dv 146 (264)
T KOG0617|consen 80 KLRILNVGMNRLN-----ILPRGFGSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFEI-----LPPDV 146 (264)
T ss_pred hhhheecchhhhh-----cCccccCCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCccc-----CChhh
Confidence 8888887777765 45677777777777777777665311 22222223456667777776643 66677
Q ss_pred hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 402 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++.++|+.|.+..|.+-. ++..++....|++|++.+|.++
T Consensus 147 g~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceee
Confidence 777888888888776654 6788888888888888888753
|
|
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-10 Score=100.01 Aligned_cols=130 Identities=25% Similarity=0.288 Sum_probs=92.9
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
-+.|+++++++|.++... ..++ -.|.++.|++++|.|...+. ++. +++|..||+++|
T Consensus 283 Wq~LtelDLS~N~I~~iD-----ESvK--L~Pkir~L~lS~N~i~~v~n--La~--------------L~~L~~LDLS~N 339 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID-----ESVK--LAPKLRRLILSQNRIRTVQN--LAE--------------LPQLQLLDLSGN 339 (490)
T ss_pred Hhhhhhccccccchhhhh-----hhhh--hccceeEEeccccceeeehh--hhh--------------cccceEeecccc
Confidence 378999999999884321 1111 12689999999999875443 222 468999999999
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+.. +..|-..+.+++.|.++.|.|.+- .++..+-+|..||+++|+|.. ...+ ..++++|.|+.+.
T Consensus 340 ~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~--ldeV-~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 340 LLAE-----CVGWHLKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEE--LDEV-NHIGNLPCLETLR 405 (490)
T ss_pred hhHh-----hhhhHhhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhh--HHHh-cccccccHHHHHh
Confidence 8874 445556788999999999887532 345566788999999998873 2222 5677888888888
Q ss_pred cCCCCCC
Q psy3611 384 LGDCLLK 390 (472)
Q Consensus 384 l~~~~i~ 390 (472)
+-+|.+.
T Consensus 406 L~~NPl~ 412 (490)
T KOG1259|consen 406 LTGNPLA 412 (490)
T ss_pred hcCCCcc
Confidence 8888775
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-09 Score=92.18 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=57.2
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhh-cCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFE-ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+.++..+++|+|++|.|.. +. .+. .+.+|+.|++++|.+... +.+..+++|++|++++|.+++.+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-----Ie-~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~-- 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-----IE-NLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSIS-- 80 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-C--
T ss_pred ccccccccccccccccccc-----cc-chhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccc--
Confidence 3356678999999998884 33 333 568999999999998632 34677899999999999998642
Q ss_pred HHHHHh-hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCC
Q psy3611 85 SIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 162 (472)
Q Consensus 85 ~l~~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~ 162 (472)
+.+ ..+++|+.|++++|.|.+-+. ...+..+++|+.|++.+|.+... ..+-...+..+|+|+.|....+..
T Consensus 81 ---~~l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 81 ---EGLDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp ---HHHHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS
T ss_pred ---cchHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccH
Confidence 222 347899999999999986321 24567899999999999998754 444555567789998888766654
|
|
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-09 Score=93.40 Aligned_cols=127 Identities=22% Similarity=0.267 Sum_probs=93.7
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc-ccHHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY-KGAIPLGQA 372 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~-~~~~~l~~~ 372 (472)
.|+.+|+++|.+.. +.+.+.-.+.++.|++++|.|...+ .+..+++|+.||+++|.++. +|+.
T Consensus 285 ~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~~~Gwh----- 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAECVGWH----- 348 (490)
T ss_pred hhhhccccccchhh-----hhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccchhHhhhhhH-----
Confidence 57788888887763 6666677788888888888887433 35567888888888887763 2332
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
.++.+++.|.+++|.|.+ + ..+.+..+|..||+++|+|..-. -+..++++|.|+.+.+.+|++.
T Consensus 349 -~KLGNIKtL~La~N~iE~-----L-SGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 -LKLGNIKTLKLAQNKIET-----L-SGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hhhcCEeeeehhhhhHhh-----h-hhhHhhhhheeccccccchhhHH---HhcccccccHHHHHhhcCCCcc
Confidence 246678888888888764 2 44566688888999998887642 3667788888999999888863
|
|
| >KOG2982|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.5e-08 Score=86.81 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=37.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 363 (472)
|++..+.+..+.+.+...+ +.....+.+.-|+++.++|.+.. -.+.+.++++|..|.++++.+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~e---k~se~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSE---KGSEPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhc---ccCCCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccc
Confidence 5666667766666543211 22334555666677777776432 23556667777777777776653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-07 Score=93.43 Aligned_cols=171 Identities=23% Similarity=0.319 Sum_probs=115.1
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCC-cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP-LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 333 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 333 (472)
+.++.|++.++.+++... ..+.. ++|+.|++++|.+.. ++..+..+++|+.|++++|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~---------------~~~~~~~nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 116 TNLTSLDLDNNNITDIPP---------------LIGLLKSNLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred cceeEEecCCcccccCcc---------------ccccchhhcccccccccchhh-----hhhhhhccccccccccCCchh
Confidence 468888888888763321 11112 268889998888874 556677888999999999987
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 334 YHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 334 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
.+ ++......+.|+.|++++|.+.+ ++........|++|++++|.+.. ....+...+.+..+.+.
T Consensus 176 ~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 176 SD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELS 240 (394)
T ss_pred hh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccC
Confidence 73 34444367788899999988874 22333344558888888885332 34555666777777777
Q ss_pred CCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 414 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 414 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|++.. ++..+...+.++.|++++|.+++... +....+++.|+++++
T Consensus 241 ~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n 287 (394)
T COG4886 241 NNKLED-----LPESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGN 287 (394)
T ss_pred Cceeee-----ccchhccccccceecccccccccccc------ccccCccCEEeccCc
Confidence 777765 35566667778888888887764322 445677777777764
|
|
| >KOG1947|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=86.31 Aligned_cols=189 Identities=22% Similarity=0.259 Sum_probs=107.2
Q ss_pred hcCCcccEEeCCCCC-CChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 222 KTGARLVELDLSDNA-FGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
..+++|+.|+++++. +++.+...++.. |++|++|.+.+|. +++.+...++.. |+.|++|+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~-----c~~L~~L~l~~c~~lt~~gl~~i~~~-------------~~~L~~L~ 301 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASR-----CPNLETLSLSNCSNLTDEGLVSIAER-------------CPSLRELD 301 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhh-----CCCcceEccCCCCccchhHHHHHHHh-------------cCcccEEe
Confidence 445788888888887 677777777763 6788888887777 788888777664 56688888
Q ss_pred cCCCCCC-hhhHHHHHHHHhcCCCccEEeCCCCC----CChhHHH---------HHHHHHhcCCCccEEEccCCCCCccc
Q psy3611 300 AGRNRLE-NEGAKMLAAVFKKLKTLERVEMPQNG----IYHVGIT---------ALSDAFEENKNLRHLNLNDNTITYKG 365 (472)
Q Consensus 300 l~~~~l~-~~~~~~l~~~~~~~~~L~~L~l~~~~----i~~~~~~---------~l~~~l~~~~~L~~L~l~~n~l~~~~ 365 (472)
++.+... +.+ +......+++++.|.+.... +++.++. .....+..++.++.+.+..+...+.|
T Consensus 302 l~~c~~~~d~~---l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~ 378 (482)
T KOG1947|consen 302 LSGCHGLTDSG---LEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLG 378 (482)
T ss_pred eecCccchHHH---HHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcc
Confidence 8877654 333 33334457776666544432 3322211 11123345666666666666544433
Q ss_pred HHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC-CCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 366 AIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 366 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
. ...+.+++.| + .+ +......+..++.|+++.+. .+..++...... +..++.+++.+++
T Consensus 379 ~---~~~l~gc~~l----------~-~~---l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~---~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 379 L---ELSLRGCPNL----------T-ES---LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS---CSNLKDLDLSGCR 438 (482)
T ss_pred h---HHHhcCCccc----------c-hH---HHHHhccCCccceEecccCccccccchHHHhhh---hhccccCCccCcc
Confidence 2 1233334433 1 11 22222223337788887774 444433222221 6677778887776
Q ss_pred -CChhHHH
Q psy3611 445 -FGEEGVE 451 (472)
Q Consensus 445 -i~~~~~~ 451 (472)
++.....
T Consensus 439 ~~~~~~~~ 446 (482)
T KOG1947|consen 439 VITLKSLE 446 (482)
T ss_pred cccchhhh
Confidence 4444433
|
|
| >KOG2982|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-07 Score=81.83 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCC
Q psy3611 320 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390 (472)
Q Consensus 320 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 390 (472)
++++..+.+..|.+.+.. -.+.....|.+--|+++.++|+ .+.++ +.+.+++.|..|.+..+.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~id--swasv-D~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNID--SWASV-DALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchh---hcccCCCCCcchhhhhcccccc--cHHHH-HHHcCCchhheeeccCCccc
Confidence 455555555555554331 1233334445555555555554 22222 45555555555555555543
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=88.81 Aligned_cols=208 Identities=19% Similarity=0.168 Sum_probs=128.2
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHH---------HHHHHHHhhcccCcCCCCCccee
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK---------LLSKALHDCYESSKKEGSPLALK 296 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~---------~l~~~l~~~~~~~~~~~~~~~L~ 296 (472)
++.++++.+........+.+-. ..|+++.+.+......... .+...+.+.. -.+|+
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~-------~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~s--------r~nL~ 125 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRK-------QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEES--------RQNLQ 125 (699)
T ss_pred eeEEeeccceecchhHHHHHhh-------ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHH--------HHhhh
Confidence 5666777666665554444322 2477777765443211111 1122222221 14789
Q ss_pred EEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC
Q psy3611 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376 (472)
Q Consensus 297 ~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~ 376 (472)
+|++++......| +..+.-..+|+|++|.+++-.+.... +.+...+.|+|..||+++..+++- ..++.+
T Consensus 126 ~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------~GIS~L 194 (699)
T KOG3665|consen 126 HLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------SGISRL 194 (699)
T ss_pred hcCccccchhhcc--HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------HHHhcc
Confidence 9999887655432 22233346889999999987776443 445555788999999999888742 567788
Q ss_pred CCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh--HHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 377 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
++|+.|.+.+-.+.... -...+..+++|+.||+|...-.... +.-..+.-..+|.|+.||.+++.+.....+.+.
T Consensus 195 knLq~L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred ccHHHHhccCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 88888888777665421 1244556789999999876544332 233344445688999999998888776666555
Q ss_pred HHHHhCCceeE
Q psy3611 455 KLMKSFGMAAA 465 (472)
Q Consensus 455 ~~l~~~~~L~~ 465 (472)
. ..|+|+.
T Consensus 272 ~---sH~~L~~ 279 (699)
T KOG3665|consen 272 N---SHPNLQQ 279 (699)
T ss_pred H---hCccHhh
Confidence 4 4554443
|
|
| >KOG1859|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.7e-08 Score=95.35 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=72.2
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
|...+.+.|.+. .+.+++.-++.+++|++++|++++. +++..++.|+.|||+.|.+.. +..+ ...
T Consensus 166 L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~--vp~l--~~~ 230 (1096)
T KOG1859|consen 166 LATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH--VPQL--SMV 230 (1096)
T ss_pred HhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc--cccc--chh
Confidence 334444555444 2344444556677777777776532 355567777777777776652 1111 011
Q ss_pred CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
.|. |+.|.+.+|.+++ + ..++++++|+.||+++|.|.+-. =...+..+..|+.|.+.||++
T Consensus 231 gc~-L~~L~lrnN~l~t-----L-~gie~LksL~~LDlsyNll~~hs---eL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 231 GCK-LQLLNLRNNALTT-----L-RGIENLKSLYGLDLSYNLLSEHS---ELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-heeeeecccHHHh-----h-hhHHhhhhhhccchhHhhhhcch---hhhHHHHHHHHHHHhhcCCcc
Confidence 223 7777777777664 2 33456677777777777665421 123344556777777777775
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=90.44 Aligned_cols=93 Identities=24% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhh
Q psy3611 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119 (472)
Q Consensus 40 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 119 (472)
++.|+|++|.+. +.++ ..+..+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|.++. .++..+.
T Consensus 420 v~~L~L~~n~L~--g~ip--~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLR--GFIP--NDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNG----SIPESLG 487 (623)
T ss_pred EEEEECCCCCcc--ccCC--HHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence 677888888774 6666 567888888888888888876 466667778888888888888876 4677778
Q ss_pred hCCCccEEEecCCcCChhhHHHHHH
Q psy3611 120 NKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 120 ~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
.+++|+.|++++|.+.+..|..+..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhh
Confidence 8888888888888888777766654
|
|
| >KOG1947|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.4e-06 Score=83.44 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=81.5
Q ss_pred HhhhcCCccEEeccCC-CcchhhHHHHHHhhhcCCCCCeeeCCCC-c-cCccchHHHHHHhccCCCCcEEeccCcc-ccc
Q psy3611 5 VFKKLKTLEHVEMPQN-GIYHVGITALSDAFEENKKLRHLNLNDN-T-ITYKGAIPLGQALSKLPSLAILNLGDCL-LKS 80 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~-~~~~~~~~l~~~l~~~~~L~~L~ls~~~-l~~ 80 (472)
....++.|+.+.+.++ .+.+.+ +......+++|+.|+++++ . +...+.... .....+++|+.|+++.+. +++
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLL-LLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhh-hhhhhcCCcCccchhhhhccCc
Confidence 3445788888888877 455433 4445566788999988873 2 222222222 345667888899998887 787
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCc-cCcchHHHHHHHhhhCCCccEEEecCCcC
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQF 134 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~~~i 134 (472)
.++..++.. ++.|+.|.+.+|. +++.|...+. ..++.|++|++++|..
T Consensus 259 ~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 259 IGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHG 307 (482)
T ss_pred hhHHHHHhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCcc
Confidence 766666554 7788888888887 7877655444 5577899999988743
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-06 Score=85.72 Aligned_cols=113 Identities=14% Similarity=0.231 Sum_probs=80.0
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
.+|++|++++...-..+ |+.+.-..+|.|+.|.+.+-.+..+. +.....++|+|..||+|++.+++. ..
T Consensus 122 ~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------SG 190 (699)
T ss_pred HhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------HH
Confidence 46888888887544333 55555566799999998887765443 335568888999999999888762 55
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
++++++|+.|.+.+-.+... .-...+-++++|++||+|......
T Consensus 191 IS~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred HhccccHHHHhccCCCCCch---hhHHHHhcccCCCeeecccccccc
Confidence 67788999988888777652 122334468899999998765443
|
|
| >KOG1859|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.5e-07 Score=89.21 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=73.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
+.++.|+|++|+++.. . .+..++.|++||+++|.+.... .+. ..++. |+.|.+.+|.++. + ..
T Consensus 187 ~ale~LnLshNk~~~v-----~-~Lr~l~~LkhLDlsyN~L~~vp--~l~--~~gc~-L~~L~lrnN~l~t-----L-~g 249 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV-----D-NLRRLPKLKHLDLSYNCLRHVP--QLS--MVGCK-LQLLNLRNNALTT-----L-RG 249 (1096)
T ss_pred HHhhhhccchhhhhhh-----H-HHHhcccccccccccchhcccc--ccc--hhhhh-heeeeecccHHHh-----h-hh
Confidence 4577777887777642 1 5566777888888877765322 221 12333 7777777776651 1 34
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh--HHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG--GLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
+.++.+|+.||++.|.+.+-.- + .-+..+..|+.|.|+||.+--.. -.+.+.-+..+..-..+-+++-.++.+
T Consensus 250 ie~LksL~~LDlsyNll~~hse--L-~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~ 324 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSE--L-EPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGR 324 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchh--h-hHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccch
Confidence 5566777777877776654211 1 11122355677777777543211 111222232233334455665555443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-06 Score=61.43 Aligned_cols=61 Identities=31% Similarity=0.546 Sum_probs=40.1
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccc
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l 78 (472)
|+|++|++++|.++.-. +..|..+++|++|++++|.+. ...+ .+|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~----~~~f~~l~~L~~L~l~~N~l~--~i~~--~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP----PDSFSNLPNLETLDLSNNNLT--SIPP--DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC----TTTTTTGTTESEEEETSSSES--EEET--TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC----HHHHcCCCCCCEeEccCCccC--ccCH--HHHcCCCCCCEEeCcCCcC
Confidence 46777777777776521 345667777777777777764 2333 4567777777777777754
|
... |
| >KOG0531|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-07 Score=92.26 Aligned_cols=85 Identities=29% Similarity=0.345 Sum_probs=39.3
Q ss_pred hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHH
Q psy3611 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 113 (472)
Q Consensus 34 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 113 (472)
+..+++|+.|++.+|.+... . ..+..+++|++|++++|.|++. ..+..++.|+.|++.+|.+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i---~--~~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~----- 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI---E--NLLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISD----- 154 (414)
T ss_pred cccccceeeeeccccchhhc---c--cchhhhhcchheeccccccccc------cchhhccchhhheeccCcchh-----
Confidence 34445555555555554211 1 1134455555555555555432 122333445555555555553
Q ss_pred HHHHhhhCCCccEEEecCCcCC
Q psy3611 114 LVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 114 l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
...+..+..|+.+++++|.+.
T Consensus 155 -~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 155 -ISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred -ccCCccchhhhcccCCcchhh
Confidence 122233445555555555444
|
|
| >KOG0532|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-07 Score=91.31 Aligned_cols=104 Identities=24% Similarity=0.308 Sum_probs=54.4
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
|+.|-+++|++.. +|+.+....+|.+|+.+.|.+. .++..+.++.+|+.|.+..|++.+ +++.+.
T Consensus 145 Lkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~~-----lp~El~ 209 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLED-----LPEELC 209 (722)
T ss_pred ceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhhh-----CCHHHh
Confidence 5555555555553 4444444455555555555543 344445555555555555555431 333333
Q ss_pred CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
.-.|..||++.|++.. +|..+..+.+|++|-|++|.+..
T Consensus 210 -~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 210 -SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred -CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCC
Confidence 2235555555555554 55555555555555555555544
|
|
| >KOG0532|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-07 Score=92.07 Aligned_cols=140 Identities=23% Similarity=0.277 Sum_probs=106.3
Q ss_pred CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHH
Q psy3611 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368 (472)
Q Consensus 289 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~ 368 (472)
++.+..|+.++++.|++.. +|..+. .--|+.|-+++|+++ .+++.++..++|..||.+.|.+. .
T Consensus 117 i~~L~~lt~l~ls~NqlS~-----lp~~lC-~lpLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~-----s 180 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSH-----LPDGLC-DLPLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQ-----S 180 (722)
T ss_pred hhhhhHHHHhhhccchhhc-----CChhhh-cCcceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhh-----h
Confidence 3444567888888888774 443322 235788888888877 45666666778888888888765 3
Q ss_pred HHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 369 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
++..+..+.+|+.|.+..|.+.+ ++..+. .=.|..||+++|+|.. +|..+..++.|++|-|.+|++.+-
T Consensus 181 lpsql~~l~slr~l~vrRn~l~~-----lp~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLED-----LPEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhhh-----CCHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCC
Confidence 55667778888888888888765 777777 4568899999999998 899999999999999999999876
Q ss_pred HHHHHHH
Q psy3611 449 GVEEMEK 455 (472)
Q Consensus 449 ~~~~l~~ 455 (472)
-++.+..
T Consensus 250 PAqIC~k 256 (722)
T KOG0532|consen 250 PAQICEK 256 (722)
T ss_pred hHHHHhc
Confidence 6665543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-06 Score=84.36 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=116.5
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCC-CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+.++.+++.++.+.+ ++....... +|+.|++++|.+. .++..+..+++|+.|++++|++.+ ++.
T Consensus 116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~-----~l~~~~~~l~~L~~L~l~~N~l~~-----l~~ 180 (394)
T COG4886 116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSD-----LPK 180 (394)
T ss_pred cceeEEecCCccccc-----Cccccccchhhcccccccccchh-----hhhhhhhccccccccccCCchhhh-----hhh
Confidence 469999999999885 666666664 9999999999987 444677789999999999999884 333
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
.....+.|+.|++++|.+.+ ++........|+.+.+++|.+.. .+..+...+.+..+.+.+|++...
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~--- 247 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDL--- 247 (394)
T ss_pred hhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeec---
Confidence 33367899999999999987 56554455779999999995333 467788888999999888887532
Q ss_pred HHHHHHHhCCceeEEecCCC
Q psy3611 452 EMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 452 ~l~~~l~~~~~L~~L~l~~~ 471 (472)
...+...+.++.|+++++
T Consensus 248 --~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 248 --PESIGNLSNLETLDLSNN 265 (394)
T ss_pred --cchhccccccceeccccc
Confidence 445566778999998876
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.4e-06 Score=85.99 Aligned_cols=105 Identities=25% Similarity=0.414 Sum_probs=58.5
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
++.|+|++|.+.. .++..+..+++|+.|+|++|.+. +.+| ..+..+++|+.|++++|.+.+ .++..++
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~--g~iP--~~~~~l~~L~~LdLs~N~lsg----~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIR--GNIP--PSLGSITSLEVLDLSYNSFNG----SIPESLG 487 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCccc--CcCC--hHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence 4556666665543 44555666666666666666553 4444 445666666666666666655 2455555
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhC-CCccEEEecCC
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSEN 132 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~ 132 (472)
.+++|+.|+|++|.++. .+|..+... .++..+++.+|
T Consensus 488 ~L~~L~~L~Ls~N~l~g----~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 488 QLTSLRILNLNGNSLSG----RVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCCCCEEECcCCcccc----cCChHHhhccccCceEEecCC
Confidence 56666666666666654 244443321 23444555544
|
|
| >KOG0531|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=8e-07 Score=88.46 Aligned_cols=109 Identities=27% Similarity=0.353 Sum_probs=84.7
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.+.+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~---- 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDI---- 155 (414)
T ss_pred cccccceeeeeccccchhh-----cccchhhhhcchheeccccccccc------cchhhccchhhheeccCcchhc----
Confidence 5568899999999998885 344377789999999999998633 2345566799999999999853
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCCh
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~ 136 (472)
..+..++.|+.+++++|.+.. +... +..+.+++.+.+.+|.+..
T Consensus 156 --~~~~~l~~L~~l~l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 156 --SGLESLKSLKLLDLSYNRIVD-----IENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred --cCCccchhhhcccCCcchhhh-----hhhhhhhhccchHHHhccCCchhc
Confidence 223447899999999999985 3332 4678899999999987754
|
|
| >KOG4658|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.4e-06 Score=89.40 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=76.4
Q ss_pred hcCCccEEeccCCC--cchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 8 KLKTLEHVEMPQNG--IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 8 ~~~~L~~L~L~~~~--l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
.++.|++|-+.+|. +.. ....+|..+|.|++||+++|.- .+.+| ..++.+-+|++|++++..+. .
T Consensus 543 ~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~~--l~~LP--~~I~~Li~LryL~L~~t~I~-----~ 609 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNSS--LSKLP--SSIGELVHLRYLDLSDTGIS-----H 609 (889)
T ss_pred CCCccceEEEeecchhhhh----cCHHHHhhCcceEEEECCCCCc--cCcCC--hHHhhhhhhhcccccCCCcc-----c
Confidence 36678888777774 222 2244577788888888887642 25666 67888888888888887776 5
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCc
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 133 (472)
+|..+++++.|.+|++..+.... .++.....+.+|++|.+....
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLE----SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cchHHHHHHhhheeccccccccc----cccchhhhcccccEEEeeccc
Confidence 78888888888888888775443 234455557788888776543
|
|
| >KOG4658|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.1e-06 Score=88.94 Aligned_cols=86 Identities=28% Similarity=0.306 Sum_probs=58.1
Q ss_pred cCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHH
Q psy3611 36 ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 115 (472)
Q Consensus 36 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 115 (472)
.++.|+.|-+..+.. .....+. ..|..++.|++||+++|.=.+ .+|..++.+-+|++|+++++.+. .+|
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~-~ff~~m~~LrVLDLs~~~~l~----~LP~~I~~Li~LryL~L~~t~I~-----~LP 611 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISG-EFFRSLPLLRVLDLSGNSSLS----KLPSSIGELVHLRYLDLSDTGIS-----HLP 611 (889)
T ss_pred CCCccceEEEeecch-hhhhcCH-HHHhhCcceEEEECCCCCccC----cCChHHhhhhhhhcccccCCCcc-----ccc
Confidence 455677777766641 0011221 346778888888888764333 47777777788888888888877 478
Q ss_pred HHhhhCCCccEEEecCC
Q psy3611 116 KAMKNKTKLKQINVSEN 132 (472)
Q Consensus 116 ~~l~~~~~L~~L~l~~~ 132 (472)
..+.+++.|.+|++..+
T Consensus 612 ~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hHHHHHHhhheeccccc
Confidence 88888888888887765
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-06 Score=58.67 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=4.0
Q ss_pred CCccEEEccCC
Q psy3611 349 KNLRHLNLNDN 359 (472)
Q Consensus 349 ~~L~~L~l~~n 359 (472)
++|++|++++|
T Consensus 25 ~~L~~L~l~~N 35 (61)
T PF13855_consen 25 PNLETLDLSNN 35 (61)
T ss_dssp TTESEEEETSS
T ss_pred CCCCEeEccCC
Confidence 33333333333
|
... |
| >KOG4242|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.8e-05 Score=75.74 Aligned_cols=190 Identities=17% Similarity=0.060 Sum_probs=116.3
Q ss_pred cceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCCh
Q psy3611 256 ALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYH 335 (472)
Q Consensus 256 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 335 (472)
++ .|++..+....+....+.-.+..... +.=-++|++.|...+.. ..++-..-..+++|....|.+..
T Consensus 301 sg-hln~~~~~~psE~lks~LLgla~ne~--------t~g~rldl~~cp~~~a~---vleaci~g~R~q~l~~rdnnldg 368 (553)
T KOG4242|consen 301 SG-HLNSRPRYTPSEKLKSMLLGLAENEA--------TLGARLDLRRCPLERAE---VLEACIFGQRVQVLLQRDNNLDG 368 (553)
T ss_pred cc-ccccccccCchhhhhhhhcccccccc--------cccccCChhhccccccc---hhhccccceeeeEeecccccccc
Confidence 45 66666666665555554433333221 11123555555554321 11222222357888888877664
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCC---CcccHHH--HHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 336 VGITALSDAFEENKNLRHLNLNDNTI---TYKGAIP--LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 336 ~~~~~l~~~l~~~~~L~~L~l~~n~l---~~~~~~~--l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
.+-... .++..++.+.+++.+-.. .+.+... +...-.....+..+.++.|..+. +.......+...+++.+|
T Consensus 369 eg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~stqtl~kl 445 (553)
T KOG4242|consen 369 EGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLLSTQTLAKL 445 (553)
T ss_pred cccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhccCcccccc
Confidence 432222 455677788888766432 1112111 11111123367888888888775 344455666777999999
Q ss_pred ECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC
Q psy3611 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 460 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 460 (472)
++++|..++.|+..++..++.+.+++.+..+.|.++..+...+...++.+
T Consensus 446 disgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 446 DISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred cccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhhcccc
Confidence 99999999988888999999888999999999888877777776666655
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=47.34 Aligned_cols=36 Identities=31% Similarity=0.514 Sum_probs=20.0
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+|+.|++++|.|++ ++..+.++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 45666666666655 4444566666666666666554
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00026 Score=45.44 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=15.5
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
+|++|++++|.|++ ++..+..+++|+.|++++|.|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444443 3333444444444444444444
|
... |
| >KOG4579|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=6.1e-05 Score=60.32 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHh-cCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
-+..++++.|++.. +-.....+.....|+..++++|.+. .+++.|. ..|.++.|++++|.+.+ +++.
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk-----~fp~kft~kf~t~t~lNl~~neisd-----vPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFK-----KFPKKFTIKFPTATTLNLANNEISD-----VPEE 95 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhh-----hCCHHHhhccchhhhhhcchhhhhh-----chHH
Confidence 45667788777652 0112233445567777788888765 3344443 34578888888888774 4455
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
+..++.|+.|+++.|.+.. +++.+..+.++-.|+..+|.+.+
T Consensus 96 ~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCcccc
Confidence 6778888888888888775 45555556777777777776665
|
|
| >KOG4579|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00012 Score=58.62 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=81.7
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh-cCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
-+..++++.|.+.. +......+.....|+..++++|.+.+ .++.+ .+++....|++++|.|++ +|..
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-----vPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-----VPEE 95 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-----chHH
Confidence 56678888888752 22445555667778888999997763 23333 345688889999999887 7777
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
+..++.|+.++++.|.+.. .+..+..+.++-.|+.-+|.+-.....
T Consensus 96 ~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888999999999998876 567776677888888888765443333
|
|
| >KOG1644|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=8.6e-05 Score=63.49 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=73.4
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
-+.+++.+.++... +-++ .......+++++|.+.. ...|..++.|.+|.++.|.|+..+- ...
T Consensus 21 e~e~~LR~lkip~i------enlg~~~d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~p----~L~ 84 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI------ENLGATLDQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRIDP----DLD 84 (233)
T ss_pred ccccccccccccch------hhccccccccceecccccchhh------cccCCCccccceEEecCCcceeecc----chh
Confidence 46677776665531 1111 23466677788877642 2355567777888888887774221 111
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
...|+|+.|.+.+|.|..-|- ..-+..|++|+.|.+-+|.+..+..-- .-.+...|+|+.||+.+
T Consensus 85 ~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~~k~~YR-~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 TFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVEHKKNYR-LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchhcccCce-eEEEEecCcceEeehhh
Confidence 235677788887777765321 123345677788877777766531100 01344567777777654
|
|
| >KOG2123|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00012 Score=65.64 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
.+.++|++-+|.++|.. ....|+.|+.|.|+-|+|+ .. ..+..|+.|++|+|..|.|.+.. -...
T Consensus 19 ~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIs--sL----~pl~rCtrLkElYLRkN~I~sld---EL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKIS--SL----APLQRCTRLKELYLRKNCIESLD---ELEY 83 (388)
T ss_pred HHhhhhcccCCCccHHH------HHHhcccceeEEeeccccc--cc----hhHHHHHHHHHHHHHhcccccHH---HHHH
Confidence 35666666666666542 2235666777777776665 21 34455666666666666665422 1234
Q ss_pred hhcCCCCCEEECcCCCCCchhHHH-HHHHHhcCCcccEE
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLD-LVKAMKNKTKLKQI 438 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~L~~L 438 (472)
+.+.++|+.|.|..|.--..++.. =...++-+|+|+.|
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 455566666666655322221111 12344555666655
|
|
| >KOG4242|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00029 Score=67.71 Aligned_cols=352 Identities=16% Similarity=0.066 Sum_probs=190.7
Q ss_pred CccEEeccCCCcchhhHHHH--HHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 11 TLEHVEMPQNGIYHVGITAL--SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
.++.+++.-|.+..+....+ +.....++-+++++++.|.+.+...+.+..-.. -++++.|.+++..+..++.
T Consensus 136 ~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~------pl~lr~c~lsskfis~l~~ 209 (553)
T KOG4242|consen 136 PLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGN------PLSLRVCELSSKFISKLLI 209 (553)
T ss_pred cCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCC------ccchhhhhhhhhHHHHhhh
Confidence 35556666665554333222 223445677899999999987766665432211 2778889888876666652
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhh-HHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG-VEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
.-+ -..+.+++++.|...+.- ............++.++.++..+.-.. ...+...-...-....+..+.+...-..+
T Consensus 210 qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~E 287 (553)
T KOG4242|consen 210 QSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEE 287 (553)
T ss_pred hhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccc
Confidence 212 245788999998877531 122223333446777777766543221 11111100000011222233332222222
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
.+. .....++.-.++ .|++.++...++.+..+.-
T Consensus 288 gg~---------------------------------------------~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 288 GGG---------------------------------------------AEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred ccc---------------------------------------------ccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 222 000111112344 6667666665555555544
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
.+..+.-+.=-.+++..|...+. .. +..+.. =..++.+.++.|++.++|.... .+.+.+..+.+.
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a--~v----leaci~-------g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~ 386 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERA--EV----LEACIF-------GQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILK 386 (553)
T ss_pred ccccccccccccCChhhcccccc--ch----hhcccc-------ceeeeEeecccccccccccccc--ceeecccccccc
Confidence 44333222222344555443221 11 111111 0247888888888877654433 445666777777
Q ss_pred CCCCCC---ChhHHHHHHHHHhcC--CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 328 MPQNGI---YHVGITALSDAFEEN--KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 328 l~~~~i---~~~~~~~l~~~l~~~--~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
+++-.. -+.+........... --+..+.++.+.... +.......+...+.++.|++++|...+.|+.-++.++.
T Consensus 387 agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq 465 (553)
T KOG4242|consen 387 AGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ 465 (553)
T ss_pred ccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhccCcccccccccCCCcccCCCCcCccccC
Confidence 765332 111211112222222 246788888887764 44445566777788999999999888888777888888
Q ss_pred cCCCCCEEECcCCCCCchhHHHHHHHHhcC
Q psy3611 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNK 432 (472)
Q Consensus 403 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 432 (472)
.+..++....+.|.++..|...+...+..+
T Consensus 466 ~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 466 SNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred CCCccCCCCCCCCCccccccchhhhhcccc
Confidence 888888888888888888765555555443
|
|
| >KOG2123|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00034 Score=62.84 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+.+.|++-+|++++ ......++.|++|.|+-|.|+ .. ..+..|.+|++|+|..|.|.+. ..+ .++
T Consensus 20 ~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIs--sL----~pl~rCtrLkElYLRkN~I~sl--dEL-~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKIS--SL----APLQRCTRLKELYLRKNCIESL--DEL-EYL 84 (388)
T ss_pred HhhhhcccCCCccH------HHHHHhcccceeEEeeccccc--cc----hhHHHHHHHHHHHHHhcccccH--HHH-HHH
Confidence 34445555554443 112233455555555555443 11 1234445555555555555432 122 334
Q ss_pred hcCCcccEEECcCCcc
Q psy3611 91 TDNTTLEDVNLTCNEI 106 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i 106 (472)
.++++|+.|.|..|..
T Consensus 85 knlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPC 100 (388)
T ss_pred hcCchhhhHhhccCCc
Confidence 4445555555554443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0017 Score=62.88 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=74.6
Q ss_pred hhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCC-ChhHHHHHHHHHHhhcccCcCCCCCcceeEE
Q psy3611 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVF 298 (472)
Q Consensus 220 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i-~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L 298 (472)
-+..+..+++|++++|.+.... . .. .+|++|.+++|.- +... ..+ +++|+.|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-----~----LP-~sLtsL~Lsnc~nLtsLP-~~L----------------P~nLe~L 99 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-----V----LP-NELTEITIENCNNLTTLP-GSI----------------PEGLEKL 99 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-----C----CC-CCCcEEEccCCCCcccCC-chh----------------hhhhhhe
Confidence 3455688999999988764332 1 12 3699999987542 1110 011 2478888
Q ss_pred EcCCC-CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHHHHHHHhcCC
Q psy3611 299 IAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQALSKL 376 (472)
Q Consensus 299 ~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~ 376 (472)
++++| .+. .+ +.+|+.|++..+.... +..+|. +|+.|.+.++. ....+ ++.. -+
T Consensus 100 ~Ls~Cs~L~-----sL------P~sLe~L~L~~n~~~~--L~~LPs------sLk~L~I~~~n~~~~~~---lp~~--LP 155 (426)
T PRK15386 100 TVCHCPEIS-----GL------PESVRSLEIKGSATDS--IKNVPN------GLTSLSINSYNPENQAR---IDNL--IS 155 (426)
T ss_pred EccCccccc-----cc------ccccceEEeCCCCCcc--cccCcc------hHhheeccccccccccc---cccc--cC
Confidence 88877 333 13 3467888877665431 112222 46666664422 11000 1111 13
Q ss_pred CCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC
Q psy3611 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415 (472)
Q Consensus 377 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n 415 (472)
++|+.|++++|.... ++..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 577888887776542 333233 56777777654
|
|
| >KOG3735|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.012 Score=54.62 Aligned_cols=121 Identities=15% Similarity=0.240 Sum_probs=87.7
Q ss_pred CCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 320 LKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 320 ~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
-+.++..++... +|...-+..+..++..+...+.+.+.+....+..+..++.++.-+++|+.|++.+|.|++.|+..+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 357888888775 3555556677788888888888888888777767777778888888888888888888888887777
Q ss_pred HHhhcCCCCCEEECcCC--CCCchhHHHHHHHHhcCCcccEEEc
Q psy3611 399 KYLTDNTTLEDVNLTCN--EISVQGGLDLVKAMKNKTKLKQINV 440 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~l 440 (472)
.++..+.+|..+...+. .++....-.++..+..+.+|-.+-.
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy 320 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGY 320 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccc
Confidence 88888888887776543 2444444456666666666555433
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0062 Score=34.72 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=9.6
Q ss_pred CccEEEccCCCCCcccHHHHHH
Q psy3611 350 NLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 350 ~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+|++|+|++|.++++|+..+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHH
Confidence 3444444444444444444433
|
|
| >KOG1644|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0024 Score=54.90 Aligned_cols=109 Identities=20% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
.+...+||.+|.+.. ..-|...+.|..|.+++|.|+..+ + ..-..+++|+.|.+.+|.+...+ .+ +-
T Consensus 42 d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~--p--~L~~~~p~l~~L~LtnNsi~~l~--dl-~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRID--P--DLDTFLPNLKTLILTNNSIQELG--DL-DP 108 (233)
T ss_pred cccceecccccchhh------cccCCCccccceEEecCCcceeec--c--chhhhccccceEEecCcchhhhh--hc-ch
Confidence 356788898887775 334667788999999999986432 2 22344578999999999776422 12 22
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
+..+++|++|.+-+|.+....--+ ...+...++|++||..+-
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR-~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYR-LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCchhcccCce-eEEEEecCcceEeehhhh
Confidence 445789999999999887532111 123456789999987653
|
|
| >KOG3735|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.02 Score=53.12 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=88.4
Q ss_pred CCCccEEEccCCC-CCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHH
Q psy3611 348 NKNLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 426 (472)
Q Consensus 348 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 426 (472)
=+.++..++..+. |...-.....+++...+..+...+.+.+..+..+-.++..+..+++|+.|++++|.|+..|+..+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 3578888887763 444345566678888888888888888888777766777778888899999999999988888888
Q ss_pred HHHhcCCcccEEEccCCC--CChhHHHHHHHHHHhCCceeEE
Q psy3611 427 KAMKNKTKLKQINVSENQ--FGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 427 ~~l~~~~~L~~L~l~~n~--i~~~~~~~l~~~l~~~~~L~~L 466 (472)
.++..+.+|..+.+.+-. .+...-..++..++.+.++-.+
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~ 318 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKF 318 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccc
Confidence 888888888888776532 3444445577777777776544
|
|
| >KOG2739|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0032 Score=56.35 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=68.7
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.+..|+.+.+.+..++. ...+-.+|+|+.|.++.|.....+-.. -....+|+|+++++++|++.. +..+.
T Consensus 41 ~~~~le~ls~~n~gltt------~~~~P~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT------LTNFPKLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccchhhhhhhccceee------cccCCCcchhhhhcccCCcccccccce--ehhhhCCceeEEeecCCcccc--ccccc
Confidence 34556667776666654 223445789999999999544334333 234556999999999999875 22342
Q ss_pred HHhhcCCcccEEECcCCccCcch-H-HHHHHHhhhCCCccEEE
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQG-G-LDLVKAMKNKTKLKQIN 128 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~-~-~~l~~~l~~~~~L~~L~ 128 (472)
-+..+.+|..|++.+|..+... . ..++ .-+++|++|+
T Consensus 111 -pl~~l~nL~~Ldl~n~~~~~l~dyre~vf---~ll~~L~~LD 149 (260)
T KOG2739|consen 111 -PLKELENLKSLDLFNCSVTNLDDYREKVF---LLLPSLKYLD 149 (260)
T ss_pred -hhhhhcchhhhhcccCCccccccHHHHHH---HHhhhhcccc
Confidence 2455788999999998776411 1 1223 3356777775
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.014 Score=33.25 Aligned_cols=24 Identities=25% Similarity=0.713 Sum_probs=11.6
Q ss_pred cccEEEccCCCCChhHHHHHHHHH
Q psy3611 434 KLKQINVSENQFGEEGVEEMEKLM 457 (472)
Q Consensus 434 ~L~~L~l~~n~i~~~~~~~l~~~l 457 (472)
+|++|+|++|.+++.|...+.+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHHh
Confidence 444455555555544444444443
|
|
| >KOG2739|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0027 Score=56.80 Aligned_cols=115 Identities=23% Similarity=0.215 Sum_probs=74.7
Q ss_pred hhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCc--cccchhHHHHHHHhhcCCcccEEECcCCccCcchH
Q psy3611 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGG 111 (472)
Q Consensus 34 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~--~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~ 111 (472)
......|+.|.+.++.++ ++ ..+..+++|+.|.++.| ++.. .+......+++|++|++++|.+.+ +
T Consensus 39 ~d~~~~le~ls~~n~glt-----t~-~~~P~Lp~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~Nki~~--l 106 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-----TL-TNFPKLPKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGNKIKD--L 106 (260)
T ss_pred cccccchhhhhhhcccee-----ec-ccCCCcchhhhhcccCCcccccc----cceehhhhCCceeEEeecCCcccc--c
Confidence 334456777776666553 22 35677899999999999 4443 233333446999999999999985 2
Q ss_pred HHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCC
Q psy3611 112 LDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 162 (472)
Q Consensus 112 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~ 162 (472)
+.+. -+....+|..|++.+|..+. .-..--+....+++|+.|......+
T Consensus 107 stl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 107 STLR-PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred cccc-hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 2333 33567789999999996654 2222233344477777777666554
|
|
| >KOG3864|consensus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.012 Score=50.75 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=17.1
Q ss_pred CCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 405 TTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 405 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
++|+.|+|++| +|++.| ...+...++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~G----L~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGG----LACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhH----HHHHHHhhhhHHHHhcC
Confidence 55555555555 455543 22333445555555544
|
|
| >KOG3864|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0085 Score=51.61 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCC-CChhHHHHHHH
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQ-FGEEGVEEMEK 455 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~ 455 (472)
.++.+|-+++.|..+|. ..+..++.++.+.+.+| .+.+.+..-+.. -.++|+.|++++|+ |++.|+..+..
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHH
Confidence 57788888888888775 44567788899999888 577765444333 45699999999997 99999886665
Q ss_pred HHHhCCceeEEecCC
Q psy3611 456 LMKSFGMAAALVLED 470 (472)
Q Consensus 456 ~l~~~~~L~~L~l~~ 470 (472)
+++|+.|.+.+
T Consensus 175 ----lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 ----LKNLRRLHLYD 185 (221)
T ss_pred ----hhhhHHHHhcC
Confidence 78888877654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.014 Score=56.78 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC-
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN- 331 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~- 331 (472)
.|++++.|++++|.++ .+ + .-+++|+.|.++++.--. .++..+ +.+|++|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~-----sL----------P---~LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 50 EARASGRLYIKDCDIE-----SL----------P---VLPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HhcCCCEEEeCCCCCc-----cc----------C---CCCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcc
Confidence 4678999999998763 11 1 123579999998753321 244433 458999999988
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC-CCCCcEEEcCCCC-CChHHHHHHHHHhhcCCCCCE
Q psy3611 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLED 409 (472)
Q Consensus 332 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~ 409 (472)
.+. .++ ++|+.|++.++.... +.. .++|+.|.+.++. ....+ ++..++ ++|+.
T Consensus 106 ~L~-----sLP------~sLe~L~L~~n~~~~---------L~~LPssLk~L~I~~~n~~~~~~---lp~~LP--sSLk~ 160 (426)
T PRK15386 106 EIS-----GLP------ESVRSLEIKGSATDS---------IKNVPNGLTSLSINSYNPENQAR---IDNLIS--PSLKT 160 (426)
T ss_pred ccc-----ccc------cccceEEeCCCCCcc---------cccCcchHhheeccccccccccc---cccccC--CcccE
Confidence 442 222 368888887765442 122 3467888875433 11100 121122 78999
Q ss_pred EECcCCCCCchhHHHHHHHHhcCCcccEEEccCC
Q psy3611 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 443 (472)
Q Consensus 410 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 443 (472)
|++++|.... ++..+. .+|++|.++.+
T Consensus 161 L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 161 LSLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 9999887543 343332 48888888765
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.015 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=14.7
Q ss_pred cCCccEEeccCCCcchhhHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALS 31 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~ 31 (472)
|++|++|+|++|.|++.|++++.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46778888888888877766554
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.022 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=10.1
Q ss_pred CcccEEEccCCCCChhHHHHH
Q psy3611 433 TKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 433 ~~L~~L~l~~n~i~~~~~~~l 453 (472)
++|++|++++|+|++.+++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555555544
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.16 Score=28.15 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=14.3
Q ss_pred CCcceEEEeeCCC-CChhHHHHHH
Q psy3611 254 CFALEELKLNNNG-LGITGCKLLS 276 (472)
Q Consensus 254 ~~~L~~L~l~~~~-i~~~~~~~l~ 276 (472)
|++|+.|++++|. ++|.+...++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4566677776664 6666665554
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.27 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=13.3
Q ss_pred CCcccEEEccCCC-CChhHHHHHH
Q psy3611 432 KTKLKQINVSENQ-FGEEGVEEME 454 (472)
Q Consensus 432 ~~~L~~L~l~~n~-i~~~~~~~l~ 454 (472)
|++|++|++++|. |++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 3556666666664 6666655543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=86.38 E-value=0.37 Score=38.92 Aligned_cols=60 Identities=22% Similarity=0.491 Sum_probs=23.6
Q ss_pred HhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCC
Q psy3611 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386 (472)
Q Consensus 317 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~ 386 (472)
|..+.+|+.+.+..+ +...+ ..++..+++++.+.+.+ .+...+. ..+..++.++.+++..
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~----~~~F~~~~~l~~i~~~~-~~~~i~~----~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIG----DNAFSNCKSLESITFPN-NLKSIGD----NAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-----TTTTTT-TT-EEEEETS-TT-EE-T----TTTTT-TTECEEEETT
T ss_pred ccccccccccccccc-ccccc----eeeeecccccccccccc-ccccccc----ccccccccccccccCc
Confidence 344555666665553 32211 22344455566666644 2221111 2344455556665544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.89 E-value=0.52 Score=38.03 Aligned_cols=107 Identities=28% Similarity=0.472 Sum_probs=57.5
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.+|++|+.+.+... +..-+ ..+|..+++|+.+.+..+ +...+. .++..+++++.+.+.. .+...+
T Consensus 6 ~~F~~~~~l~~i~~~~~-~~~I~----~~~F~~~~~l~~i~~~~~-~~~i~~----~~F~~~~~l~~i~~~~-~~~~i~- 73 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT-IKKIG----ENAFSNCTSLKSINFPNN-LTSIGD----NAFSNCKSLESITFPN-NLKSIG- 73 (129)
T ss_dssp TTTTT-TT--EEEETST---EE-----TTTTTT-TT-SEEEESST-TSCE-T----TTTTT-TT-EEEEETS-TT-EE--
T ss_pred HHHhCCCCCCEEEECCC-eeEeC----hhhccccccccccccccc-ccccce----eeeecccccccccccc-cccccc-
Confidence 46888999999998753 44311 455788889999999875 432232 4678888899999976 333221
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 131 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 131 (472)
...+..+++|+.+++..+ +..- -...+..+ .|+.+.+..
T Consensus 74 ---~~~F~~~~~l~~i~~~~~-~~~i----~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 ---DNAFSNCTNLKNIDIPSN-ITEI----GSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ---TTTTTT-TTECEEEETTT--BEE----HTTTTTT--T--EEE-TT
T ss_pred ---cccccccccccccccCcc-ccEE----chhhhcCC-CceEEEECC
Confidence 133445789999998765 3321 12234555 888888765
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.62 Score=22.89 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=4.9
Q ss_pred CCcEEeccCcccc
Q psy3611 67 SLAILNLGDCLLK 79 (472)
Q Consensus 67 ~L~~L~ls~~~l~ 79 (472)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
|
... |
| >KOG3763|consensus | Back alignment and domain information |
|---|
Probab=82.93 E-value=1.9 Score=43.23 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=38.2
Q ss_pred cCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCC--CCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 347 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
+.|.+..+++++|++.+-.. +-..-...|.|+.|+|++| .+... ..+.+ -+...|++|-+.||.+-+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~--~el~K--~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSE--SELDK--LKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcch--hhhhh--hcCCCHHHeeecCCcccc
Confidence 45678888888887764221 2233345677888888887 33321 01111 123556777777776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 472 | ||||
| 1k5d_C | 386 | Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl | 9e-20 | ||
| 1yrg_A | 385 | The Crystal Structure Of Rna1p: A New Fold For A Gt | 1e-19 |
| >pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 386 | Back alignment and structure |
|
| >pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase- Activating Protein Length = 385 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 9e-67
Identities = 100/390 (25%), Positives = 160/390 (41%), Gaps = 58/390 (14%)
Query: 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 152
++E +L + I+ + + + +K+I +S N G E
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAAR-----------W 51
Query: 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHN 212
+ + +L + S + + +
Sbjct: 52 LSENIAS-------------------------KKDLEI---------AEFSDIFTGRVKD 77
Query: 213 TSNQSHMS----LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG 268
++ L +L + LSDNAFGP E L D L LE L L+NNGLG
Sbjct: 78 EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP--LEHLYLHNNGLG 135
Query: 269 ITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEM 328
+++AL + + K + +P L+ I GRNRLEN K A F+ + L V+M
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194
Query: 329 PQNGIYHVGIT-ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
QNGI GI L + + L+ L+L DNT T+ G+ L AL P+L L L DC
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Query: 388 LLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQ 444
LL + GA+++ + N L+ + L NEI + L + K L + ++ N+
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314
Query: 445 FGEEG--VEEMEKLMKSFGMAAALVLEDDE 472
F EE V+E+ ++ + G L+D E
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDDME 344
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGIT-ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
A F+ + L V+M QNGI GI L + ++L+ L+L DNT T+ G+ L
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAM 118
AL P+L L L DCLL + GA+++ + N L+ + L NEI + L +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298
Query: 119 KNK-TKLKQINVSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEE 175
K L + ++ N+F EE V+E+ ++ + G L+D E +EE+DEE E
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEA 358
Query: 176 ENDSD 180
E+ S
Sbjct: 359 ESQSP 363
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 5e-36
Identities = 64/389 (16%), Positives = 120/389 (30%), Gaps = 62/389 (15%)
Query: 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLA 69
++E + + I ++ E+ ++ + L+ NTI + A L + ++ L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 70 ILNLGDCLLKS------AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 123
I D + + L L V L+ N L+ + T
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 124 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
L+ + + N G + + +A AL +E +
Sbjct: 124 LEHLYLHNNGLGPQAGAK---------IARAL------------------QELAVNKKAK 156
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
+ L N ++ + + ++ L + + N P G+E
Sbjct: 157 NAPPLRSII----------CGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIE 205
Query: 244 G-LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302
L + L C L+ L L +N G L+ AL L+
Sbjct: 206 HLLLEGLAY--CQELKVLDLQDNTFTHLGSSALAIALKSW----------PNLRELGLND 253
Query: 303 NRLENEGAKMLAAVFKKL--KTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDN 359
L GA + F KL L+ + + N I + L +E +L L LN N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313
Query: 360 TITYKGAI--PLGQALSKLPSLAILNLGD 386
+ + + + + S + L D
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDELDD 342
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 15/154 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTI------TYKGA 55
+ AV + +++ + + N I LS+ K L +D +
Sbjct: 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83
Query: 56 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 115
L QAL K P L + L D + +L+ +T LE + L N + Q G +
Sbjct: 84 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143
Query: 116 KA---------MKNKTKLKQINVSENQFGEEGVE 140
+A KN L+ I N+ ++
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-19
Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 15/155 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHV------GITALSDAFEENKKLRHLNLNDNTITYKGA 55
L+ K LE E V + L A + KL + L+DN
Sbjct: 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111
Query: 56 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD---------NTTLEDVNLTCNEI 106
PL LSK L L L + L + IA+ L + L + N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Query: 107 SVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 141
+ K ++ L + + +N EG+E
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 5e-19
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEE---------NKKLRHLNLNDNTITY 52
L K LEH+ + NG+ ++ A +E LR + N +
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173
Query: 53 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASS-IAKYLTDNTTLEDVNLTCNEISVQGG 111
+ L + + ++ G + + L L+ ++L N + G
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233
Query: 112 LDLVKAMKNKTKLKQINVSENQFGEEGVEE 141
L A+K+ L+++ +++ G
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAA 263
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 3e-52
Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 36/445 (8%)
Query: 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLA 69
++ +++ + L ++ + + L+D +T + AL P+LA
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPL---LQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 70 ILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 128
LNL L G + + L + ++ ++L ++ G L ++ L++++
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 129 VSENQFGEEGVEEMEKLMKSFGMA-AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSN 187
+S+N G+ G++ + + + L LE CS E + +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY----CSLSAASCEPL----ASVLRAKPD 171
Query: 188 LSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247
NN + +L L L L
Sbjct: 172 FKELTV----------SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221
Query: 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLEN 307
++ S L EL L +N LG G L L L+ +
Sbjct: 222 IVASKAS--LRELALGSNKLGDVGMAELCPGLLHPSSR---------LRTLWIWECGITA 270
Query: 308 EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGA 366
+G L V + ++L+ + + N + G L + E L L + + T
Sbjct: 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330
Query: 367 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDL 425
L++ L L + + L+ AG + + L + L + L ++S L
Sbjct: 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390
Query: 426 VKAMKNKTKLKQINVSENQFGEEGV 450
+ L+++++S N G+ G+
Sbjct: 391 AATLLANHSLRELDLSNNCLGDAGI 415
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 3e-50
Identities = 92/449 (20%), Positives = 158/449 (35%), Gaps = 46/449 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEE-NKKLRHLNLNDNTITYKGAIPLGQ 60
+++ + L + + N + VG+ + + + K++ L+L + +T G L
Sbjct: 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK 119
L LP+L L+L D LL AG + + L D LE + L +S L ++
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167
Query: 120 NKTKLKQINVSENQFGEEGVEE-MEKLMKSFGMAAALVLED----DEGECSDEEQDEESE 174
K K++ VS N E GV + L S AL LE + C D
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-CRD-------- 218
Query: 175 EENDSDAEGDNSNLSHND--SNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDL 232
++L SN + ++ ++ L +
Sbjct: 219 ---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT------------LWI 263
Query: 233 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSP 292
+ G L +LR+ L+EL L N LG G +LL + L +
Sbjct: 264 WECGITAKGCGDLCRVLRAKES--LKELSLAGNELGDEGARLLCETLLEPG--------- 312
Query: 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE-NKNL 351
L+ ++V + + L +++ N + G+ L + L
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372
Query: 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDV 410
R L L D ++ L L SL L+L + L AG + + + LE +
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 411 NLTCNEISVQGGLDLVKAMKNKTKLKQIN 439
L S + L K+K L+ I+
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 73/428 (17%), Positives = 144/428 (33%), Gaps = 67/428 (15%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
+ ++ L++ ++ L L + + L DC L A I+ L N L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPAL 58
Query: 97 EDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 155
++NL NE+ G +++ ++ K++++++ G + +++
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT------- 111
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND--SNHSHNASNQSHNNSNQSHNT 213
L N +A Q
Sbjct: 112 -----------------------------LPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273
L +L L + E LA +LR+ +EL ++NN + G +
Sbjct: 143 R------------LEKLQLEYCSLSAASCEPLASVLRAKPD--FKELTVSNNDINEAGVR 188
Query: 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 333
+L + L D SP L+ + ++ + L + +L + + N +
Sbjct: 189 VLCQGLKD---------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 334 YHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392
VG+ L + LR L + + IT KG L + L SL L+L L
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 393 GASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451
GA + + L + LE + + + + L ++ +S N+ + GV
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 452 EMEKLMKS 459
E+ + +
Sbjct: 360 ELCQGLGQ 367
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-38
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 14/242 (5%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ + A L EL L N G +G+ L L L L + G+ GC L + L
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLR 281
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGIT 339
+LK N L +EGA++L + LE + + +
Sbjct: 282 AKE----------SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSIA 398
S +N+ L L +++N + G L Q L + L +L L DC + + SS+A
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391
Query: 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLM 457
L N +L +++L+ N + G L LV++++ L+Q+ + + + EE + ++ L
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451
Query: 458 KS 459
K
Sbjct: 452 KD 453
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-35
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 14/234 (5%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
L+ EL +S+N GV L L+ S C LE LKL + G+ C+ L +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVA 224
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMPQNGIYHVGIT 339
+L+ G N+L + G L L + + + GI G
Sbjct: 225 SK----------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSIA 398
L ++L+ L+L N + +GA L + L + L L + C +A S +
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334
Query: 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 451
L N L ++ ++ N + G +L + + + L+ + +++ +
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 7e-19
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A + L+ + V + G+ +S A N L LNL N + G + Q
Sbjct: 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79
Query: 62 LSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK- 119
L + L+L +C L AG ++ L TL++++L+ N + G L + +
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKS 148
+ +L+++ + E + ++++
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRA 168
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-41
Identities = 66/408 (16%), Positives = 127/408 (31%), Gaps = 67/408 (16%)
Query: 20 NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLL 78
H G + + + L+L+ N + + L QA + P S+ LNL L
Sbjct: 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
Query: 79 KSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGE 136
+ + + L + +NL+ N +S + +LVK + + +++ N F
Sbjct: 64 GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
Query: 137 EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND--SN 194
+ E A ++++ + N
Sbjct: 124 KSSSE---------FKQAF--------------------------SNLPASITSLNLRGN 148
Query: 195 HSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCC 254
S+ + + S L+L N LA L S
Sbjct: 149 DLGIKSSDELIQILAAIPANVNS------------LNLRGNNLASKNCAELAKFLASIPA 196
Query: 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA 314
++ L L+ N LG+ L+ P + N L + L
Sbjct: 197 -SVTSLDLSANLLGLKSYAELAYIFSSI---------PNHVVSLNLCLNCLHGPSLENLK 246
Query: 315 AVFKKLKTLERVEMPQNGIYHVG---ITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371
+ LK L+ V + + + ++ AL AF + + ++ N I +IP+
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 372 ALSKL-PSLAILNLGDCLLKSAGASSI-AKYLTDNTTLEDVNLTCNEI 417
+ +L + +L + L A + L L + TC +
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-37
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 15/244 (6%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ LDLS N I L ++ ++ L L+ N LG L + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDELVQIL- 75
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGIT 339
P + N L + + L + T+ +++ N +
Sbjct: 76 --------AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127
Query: 340 ALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSI 397
AF ++ LNL N + K + L Q L+ +P ++ LNL L S + +
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187
Query: 398 AKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEK 455
AK+L ++ ++L+ N + ++ +L + +N+ N +E ++
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 456 LMKS 459
L S
Sbjct: 248 LKDS 251
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-36
Identities = 50/383 (13%), Positives = 110/383 (28%), Gaps = 66/383 (17%)
Query: 76 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQF 134
L G++ + ++ + + ++L+ N + ++L++A + +N+S N
Sbjct: 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
Query: 135 GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSN 194
G + +E+ L +N++ +
Sbjct: 64 GFKNSDEL---------VQIL--------------------------AAIPANVTSLN-- 86
Query: 195 HSHNASNQSHNNSNQSHNTSNQ--SHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSS 252
+ N S+ + LDL N F +
Sbjct: 87 ----------LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 312
++ L L N LGI L + L P + N L ++
Sbjct: 137 PA-SITSLNLRGNDLGIKSSDELIQILAAI---------PANVNSLNLRGNNLASKNCAE 186
Query: 313 LAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEENKN-LRHLNLNDNTITYKGAIPLG 370
LA + ++ +++ N + L+ F N + LNL N + L
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246
Query: 371 QALSKLPSLAILNLGDCLLKSAG---ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 427
L L + L ++K+ ++ + + V+ EI + +
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 428 AMKNK-TKLKQINVSENQFGEEG 449
++ K ++
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQ 329
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-35
Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 16/243 (6%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A + L+LS N + L L + + L L N +A +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNL-- 136
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSD 343
P ++ N L + + L + + + + + N + L+
Sbjct: 137 -------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189
Query: 344 AFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYL 401
++ L+L+ N + K L S +P + LNL L ++
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249
Query: 402 TDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 458
L+ V L + +S + L A N K+ ++ + + + L++
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309
Query: 459 SFG 461
Sbjct: 310 ELS 312
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-34
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 14/243 (5%)
Query: 222 KTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHD 281
T A + L+LS N+ G + L +L + + L L+ N L L K L
Sbjct: 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAA 106
Query: 282 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITA 340
P + V G N ++ + F L ++ + + N +
Sbjct: 107 I---------PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157
Query: 341 LSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIA 398
L N+ LNL N + K L + L+ +P S+ L+L LL + +A
Sbjct: 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217
Query: 399 KYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLM 457
+ + +NL N + +L + L+ + + + E+ + L
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277
Query: 458 KSF 460
+F
Sbjct: 278 AAF 280
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 40/283 (14%), Positives = 90/283 (31%), Gaps = 50/283 (17%)
Query: 2 LAAVFKKLK-TLEHVEMPQNGIYHVGITALSDAFE-ENKKLRHLNLNDNTITYKGAIPLG 59
L + T+ +++ N + AF + LNL N + K + L
Sbjct: 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159
Query: 60 QALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKA 117
Q L+ +P ++ LNL L S + +AK+L ++ ++L+ N + ++ +L
Sbjct: 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219
Query: 118 MK-NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+ +N+ N +E ++ L S
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS---------------------------- 251
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
+L ++ + N S + + +++ ++ +D +
Sbjct: 252 --------LKHLQTVYLDY-----DIVKNMSKEQCKALGAAFPNIQK---IILVDKNGKE 295
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
P +++L+R + L N L +
Sbjct: 296 IHPSHSIPISNLIRELSG-KADVPSLLNQCLIFAQKHQTNIED 337
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-23
Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 262 LNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK 321
+N G + + P + N L + L F
Sbjct: 1 MNYKLTLHPGSNPVEEFTS----------IPHGVTSLDLSLNNLYSISTVELIQAFANTP 50
Query: 322 -TLERVEMPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLP-S 378
++ + + N + L N+ LNL+ N ++YK + L + L+ +P +
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 379 LAILNLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLK 436
+ +L+LG S +S + ++ +NL N++ ++ +L++ + +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 437 QINVSENQFGEEGVEEMEKLMKS 459
+N+ N + E+ K + S
Sbjct: 171 SLNLRGNNLASKNCAELAKFLAS 193
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-19
Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 12/207 (5%)
Query: 2 LAAVFKKL-KTLEHVEMPQNGIYHVGITALSDAFEE-NKKLRHLNLNDNTITYKGAIPLG 59
L + + + + + N + L+ + L+L+ N + K L
Sbjct: 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217
Query: 60 QALSKLP-SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLV 115
S +P + LNL L ++ L+ V L + +S + L
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277
Query: 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD-EESE 174
A N K+ ++ + + + L++ + +C Q + +
Sbjct: 278 AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG--KADVPSLLNQCLIFAQKHQTNI 335
Query: 175 EENDSDAEGDNSNLSHN---DSNHSHN 198
E+ + E S + + +H H+
Sbjct: 336 EDLNIPDELRESIQTCKPLLEHHHHHH 362
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 8e-18
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
+ + +++ N +Y + L AF + LNL+ N++ +K + L Q
Sbjct: 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73
Query: 61 ALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAM 118
L+ +P ++ LNL L + + K L T+ ++L N+ S + + +A
Sbjct: 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133
Query: 119 KN-KTKLKQINVSENQFGEEGVEE 141
N + +N+ N G + +E
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDE 157
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 45 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTC 103
+N + G+ P+ + S + L+L L S + + + ++ +NL+
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 104 NEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 148
N + + +LV+ + + +N+S N + +E+ K + +
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 9e-36
Identities = 49/258 (18%), Positives = 96/258 (37%), Gaps = 18/258 (6%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+ H S + + L +L+L+ P+ +A +L S AL+E+ L +
Sbjct: 53 DHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASC 111
Query: 266 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLE 324
L G + L + L L N L E K L + + +
Sbjct: 112 QLDPAGLRTLLPVFLRARK--------LGL-----QLNSLGPEACKDLRDLLLHDQCQIT 158
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+ + N + G+ L + N ++ HL+L + +G L L + L LN+
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218
Query: 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL---DLVKAMKNKTKLKQINVS 441
A ++A+ ++ +LE ++L NE+S +G DL A + ++
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278
Query: 442 ENQFGEEGVEEMEKLMKS 459
E + ++ ++
Sbjct: 279 GTAVSEYWSVILSEVQRN 296
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 36/279 (12%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
L + + + N + L D ++ ++ L L++N +T G L +
Sbjct: 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
L+ S+ L+L L G +A L N L+++N+ N L L +A +
Sbjct: 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L+ +++ N+ EG + + L + A +V+ EG E E
Sbjct: 238 HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV---- 293
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
+ S + + + L+ DL D+ +
Sbjct: 294 -----------------QRNLNSWDRARVQRHLE------------LLLRDLEDSRGATL 324
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
A LLR + L G
Sbjct: 325 NPWRKAQLLRVEG--EVRALLEQLGSSGSPSGSWSHPQF 361
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 26/227 (11%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
++ L LS+N GV L + L + + L L + GLG G +LL+ L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTS--VTHLSLLHTGLGDEGLELLAAQLD---- 208
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L+ N + A LA ++ +LE + + N + G L D
Sbjct: 209 ------RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262
Query: 345 FEENKNLRHL---NLNDNTITYKGAIPLGQALSKLPSLA-----------ILNLGDCLLK 390
+ + ++ ++ L + L S + +L D
Sbjct: 263 GGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGA 322
Query: 391 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437
+ A+ L + + G +
Sbjct: 323 TLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHH 369
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 2e-21
Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 26/201 (12%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
L + L L G G+E LA L + L+EL + NG G T L++A
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ--LQELNVAYNGAGDTAALALARAAR 236
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE---MPQNGIYHVG 337
+ +L++ N L +EG ++L + + RV +
Sbjct: 237 EHP----------SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286
Query: 338 ITALSDAFEENK-----------NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
LS+ L +L D+ Q L + L
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346
Query: 387 CLLKSAGASSIAKYLTDNTTL 407
S S
Sbjct: 347 GSSGSPSGSWSHPQFEKGAGH 367
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 2/137 (1%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLSKA 278
+ + L L L N G + L DL ++ A + + +LS+
Sbjct: 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV 293
Query: 279 LHDCYESSKKEG-SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 337
+ + L L + +R A + + + +
Sbjct: 294 QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPS 353
Query: 338 ITALSDAFEENKNLRHL 354
+ FE+ H
Sbjct: 354 GSWSHPQFEKGAGHHHH 370
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 5/119 (4%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAG 82
H + E LR LNL +T + L +L +NL C L AG
Sbjct: 58 HYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG 117
Query: 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEEGVE 140
++ L L N + + DL + ++ ++ + +S N GV
Sbjct: 118 LRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 14/139 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK---KLRHLNLNDNTITYKGAIPL 58
LA ++ +LE + + N + G L D + ++ ++ ++ L
Sbjct: 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL 290
Query: 59 GQALSKLPSLA-----------ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
+ L S + +L D + A+ L + +
Sbjct: 291 SEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
Query: 108 VQGGLDLVKAMKNKTKLKQ 126
G +
Sbjct: 351 SPSGSWSHPQFEKGAGHHH 369
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 12/110 (10%), Positives = 21/110 (19%), Gaps = 14/110 (12%)
Query: 1 MLAAVFKKLKTLEHVE---MPQNGIYHVGITALSDAFEENK-----------KLRHLNLN 46
+L + + V + LS+ +L +L
Sbjct: 258 VLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLE 317
Query: 47 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
D+ Q L + L S S
Sbjct: 318 DSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGH 367
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 2e-22
Identities = 93/473 (19%), Positives = 156/473 (32%), Gaps = 79/473 (16%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALS---------------------DAFEENKKL 40
L V + L T E + + N I V ++ +AF L
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75
Query: 41 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 100
R L+L + I + + A L L L L C L A Y + L ++
Sbjct: 76 RILDLGSSKIYF---LHPD-AFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLD 129
Query: 101 LTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 160
L+ N+I L L + LK I+ S NQ E+E L L
Sbjct: 130 LSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-------QGKTLSFF 179
Query: 161 EGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMS 220
+ + + N L D + + + + N SN + S +
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
++ + A L RSS + L L++ + L S+
Sbjct: 239 AH---HIMGAGFGFHNIKDPDQNTFAGLARSS----VRHLDLSHGFV----FSLNSRVFE 287
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
+ LKV N++ K+ F L L+ + + N + +
Sbjct: 288 TLKD----------LKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLLGELY--- 330
Query: 341 LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS-AGASSIAK 399
S F + +++L N I I L L L+L D L + SI
Sbjct: 331 -SSNFYGLPKVAYIDLQKNHIAI---IQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 400 -YLTDN--TTLEDVNLTCNEISVQG----GLDLVKAMKNKTKLKQINVSENQF 445
+L+ N TL +NLT N I + LD++ + L+ + +++N+F
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 69/391 (17%), Positives = 117/391 (29%), Gaps = 113/391 (28%)
Query: 5 VFKKLK--TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L ++ H+++ ++ + S FE K L+ LNL N I I +A
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINK---IA-DEAF 310
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
L +L +LNL LL +S+ + ++L N I++ + K
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSN----FYGLPKVAYIDLQKNHIAIIQD----QTFKFLE 362
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
KL+ +++ +N L S +
Sbjct: 363 KLQTLDLRDNA-----------------------LTTIHFIPSIPDIF------------ 387
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHN--TSNQSHMSLKTGARLVELDLSDNAFGPI 240
LS N + + N + S N + L L L L+ N F
Sbjct: 388 -----LSGNKLVTLPKINL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
+ S LE+L L N L +E+
Sbjct: 442 SGDQTPSENPS-----LEQLFLGENML------------QLAWETELCWD---------- 474
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
VF+ L L+ + + N + + F LR L+LN N
Sbjct: 475 ---------------VFEGLSHLQVLYLNHNYLNSLP----PGVFSHLTALRGLSLNSNR 515
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
+T + +L IL++ L +
Sbjct: 516 LTV---LSHN---DLPANLEILDISRNQLLA 540
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
F+ L L +++ + IY + DAF+ +L L L ++
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRN 121
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 435
L +L L+L ++S + +L+ ++ + N+I + +L + ++ KT L
Sbjct: 122 LKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKT-L 176
Query: 436 KQINVSENQFGEEGVEEMEKLMKSF 460
+++ N + K M F
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPF 201
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ +LE + + +N + T L D FE L+ L LN N + +P G
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS---LPPG-VF 500
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
S L +L L+L L + + LE ++++ N++
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDISRNQLLAPNPDVF-------V 547
Query: 123 KLKQINVSENQF 134
L ++++ N+F
Sbjct: 548 SLSVLDITHNKF 559
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 9e-21
Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 306 ENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 364
+ + L + LE V + I + A ++A + N ++ ++
Sbjct: 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80
Query: 365 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT--CNEISVQGG 422
A L + L +L LN+ + +G ++ + L NT+L ++ + +
Sbjct: 81 VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140
Query: 423 LDLVKAMKNKTKLKQINVSENQFGEEGV 450
+++ ++ T L + Q G
Sbjct: 141 MEIANMLEKNTTLLKFGYHFTQQGPRLR 168
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-20
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 3/143 (2%)
Query: 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356
V + + K A K +++ + AL++ + N L+ LN+
Sbjct: 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100
Query: 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTC 414
N I+ G + L +AL SL L + + L + IA L NTTL
Sbjct: 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160
Query: 415 NEISVQGGLDLVKAMKNKTKLKQ 437
+ + M N +++
Sbjct: 161 TQQGPRLRASNA-MMNNNDLVRK 182
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-20
Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 3/141 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQ-NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
L + LE V + I + A ++A + N ++ ++ A L +
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT--CNEISVQGGLDLVKAM 118
L +L LN+ + +G ++ + L NT+L ++ + + +++ +
Sbjct: 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147
Query: 119 KNKTKLKQINVSENQFGEEGV 139
+ T L + Q G
Sbjct: 148 EKNTTLLKFGYHFTQQGPRLR 168
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 5e-18
Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 19/190 (10%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKAL 279
+K D N+ E L + + LEE+ LNN + + K ++AL
Sbjct: 6 IKPTKYKPVPDEEPNS--TDVEETLKRIQNNDP--DLEEVNLNNIMNIPVPTLKACAEAL 61
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+++ +K F R + A LA + K TL+ + + N I GI
Sbjct: 62 ----KTNTY------VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111
Query: 340 ALSDAFEENKNLRHLNL--NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397
AL +A + N +L L + + + + L K +L
Sbjct: 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ--GPRLRA 169
Query: 398 AKYLTDNTTL 407
+ + +N L
Sbjct: 170 SNAMMNNNDL 179
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 3/127 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A K ++ + AL++ + N L+ LN+ N I+ G + L +A
Sbjct: 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116
Query: 62 LSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
L SL L + + L + IA L NTTL + + M
Sbjct: 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNA-MMN 175
Query: 120 NKTKLKQ 126
N +++
Sbjct: 176 NNDLVRK 182
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 9e-17
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
L + L +NLN+ I +AL + ++ A ++A
Sbjct: 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 86
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN--QFGEEGVEEMEKL 145
+ L N TL+ +N+ N IS G L LV+A+++ T L ++ + G E+ +
Sbjct: 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146
Query: 146 MKS 148
++
Sbjct: 147 LEK 149
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 369 LGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 427
L + + P L +NL + + + A+ L NT ++ ++ + L +
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87
Query: 428 AMKNKTKLKQINVSENQFGEEGVEEM 453
+K LK +NV N G+ +
Sbjct: 88 MLKVNNTLKSLNVESNFISGSGILAL 113
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 63/451 (13%), Positives = 132/451 (29%), Gaps = 73/451 (16%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +L+ + + + + + K L+ LN+ N I + L + S
Sbjct: 95 AFSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSN 147
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTK 123
L +L L+L ++S + + ++L+ N + +Q G + +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------KEIR 201
Query: 124 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
L ++ + N ++ + +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGL-----------------------EVHRLVLGEFR 238
Query: 184 DNSNLSHNDSNHSHNASN--QSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241
+ NL D + N + + L
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV------ 292
Query: 242 VEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLA------ 294
+ + S F + L+L N KL S L +S K G+ +
Sbjct: 293 --TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPS 348
Query: 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354
L+ RN L +G + +L+ +++ NG+ +S F + L HL
Sbjct: 349 LEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHL 401
Query: 355 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414
+ + + + L +L L++ + A ++LE + +
Sbjct: 402 DFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAG 454
Query: 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
N L L +++S+ Q
Sbjct: 455 NSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 71/456 (15%), Positives = 145/456 (31%), Gaps = 52/456 (11%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ F L+ +++ + I + A++ L L L N I + LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AF 96
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
S L SL L + L S + TL+++N+ N I L + N T
Sbjct: 97 SGLSSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSNLT 149
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEE--QDEESEEENDSD 180
L+ +++S N+ ++ L + + +L L + ++ +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR- 208
Query: 181 AEGDNSNLSHNDSNHSHNASN--QSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238
+N + + + + N N L L + +
Sbjct: 209 ---NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPL 293
+ + +C + L + + L +C
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 353
+LK N+ N + L +LE +++ +NG+ G S + +L++
Sbjct: 326 SLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKY 377
Query: 354 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413
L+L+ N + + L L L+ LK S+ L + L +++
Sbjct: 378 LDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DIS 429
Query: 414 CNEISV--QGGLDLVKAMKNKTKLKQINVSENQFGE 447
V G + + L+ + ++ N F E
Sbjct: 430 HTHTRVAFNGIFN------GLSSLEVLKMAGNSFQE 459
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-09
Identities = 71/447 (15%), Positives = 138/447 (30%), Gaps = 84/447 (18%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L F L LEH+++ N I + T L + L+L+ N + + I G A
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPG-A 196
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
++ L L L + + + L L E +G L+ +
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLEKFDKSALE 252
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDA 181
L + + E + + ++ F +
Sbjct: 253 -GLCNLTIEEFRLAYLDYYL-DDIIDLFNCLTNV-------------------------- 284
Query: 182 EGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241
+ +L + S + N +LK L L + N
Sbjct: 285 --SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNK----- 336
Query: 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
+ +LE L L+ NGL GC S + +LK
Sbjct: 337 ---GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS------------DFGTTSLKYLDLS 381
Query: 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD--AFEENKNLRHLNLNDN 359
N + +++ F L+ LE ++ + + +S+ F +NL +L+++
Sbjct: 382 FNGVIT-----MSSNFLGLEQLEHLDFQHS-----NLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-S 418
G + L SL +L + + I L L ++L+ ++
Sbjct: 432 HTR---VAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL---RNLTFLDLSQCQLEQ 484
Query: 419 VQGGLDLVKAMKNKTKLKQINVSENQF 445
+ A + + L+ +N++ NQ
Sbjct: 485 LSPT-----AFNSLSSLQVLNMASNQL 506
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 84/419 (20%), Positives = 132/419 (31%), Gaps = 61/419 (14%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLG--QAL 62
LKTL+ + + N I L + F L HL+L+ N I I + L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVL 172
Query: 63 SKLPSLAI-LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
++P L + L+L + I L + L N S+ ++ +
Sbjct: 173 HQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG- 226
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKS-FGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L+ + +F EG +EK KS L +E+ D D+ + N
Sbjct: 227 --LEVHRLVLGEFRNEG--NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CL 281
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
+ +L + S + N +LK L L + N G
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNKGGNA 340
Query: 241 GVE--------------GLADLLRSSCCFA----LEELKLNNNGL-----GITGCKLLSK 277
E GL+ S L+ L L+ NG+ G + L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Query: 278 -ALHDCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332
E S L +F L +LE ++M N
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNS 456
Query: 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
L D F E +NL L+L+ + + A + L SL +LN+ LKS
Sbjct: 457 FQE---NFLPDIFTELRNLTFLDLSQCQLEQ---LSPT-AFNSLSSLQVLNMASNQLKS 508
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
VF L+ L ++++ + F L L + N+ L ++
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTE 468
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTK 123
L +L L+L C L+ ++ ++L+ +N+ N++ SV G T
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDG-----IFDRLTS 519
Query: 124 LKQINVSENQF 134
L++I + N +
Sbjct: 520 LQKIWLHTNPW 530
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-17
Identities = 72/469 (15%), Positives = 148/469 (31%), Gaps = 44/469 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLND-NTITYKGAIPLGQ 60
+ + L+ L+ V + + + + L+ A L L L+ + T G L
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR--ADDLETLKLDKCSGFTTDG---LLS 158
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
++ + L + + + + NT+LE +N E + DL +N
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L + V + + E + F AAA + E G +++ E
Sbjct: 219 CRSLVSVKVGDFEILE---------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHN----NSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
+ LS+ N + + + + ++ L L+ +
Sbjct: 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV- 328
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALK 296
IG GL L + C L+ L++ G G + + + +G L+
Sbjct: 329 ---IGDRGLEVL--AQYCKQLKRLRI-ERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELE 381
Query: 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN----KNLR 352
+ + NE + + K L V + + + L + K LR
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLL--DREERITDLPLDNGVRSLLIGCKKLR 439
Query: 353 HLNLNDN--TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410
+T G +GQ P++ + LG G ++ + L+ +
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKL 493
Query: 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ S + V + + L+ + V + G + M+
Sbjct: 494 EMRGCCFSERAIAAAVTKLPS---LRYLWVQGYRASMTGQDLMQMARPY 539
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-11
Identities = 65/455 (14%), Positives = 139/455 (30%), Gaps = 67/455 (14%)
Query: 43 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 102
NL + + + L L ++ ++ +AK D+ LE + L
Sbjct: 89 FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD--LETLKLD 146
Query: 103 -CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE--- 158
C+ + G L+ + + K+K + + E+ F E+ + + +L + L
Sbjct: 147 KCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203
Query: 159 ----DDEG------ECSDEEQDEESEEENDSDA-------------EGDNSNLSHNDSNH 195
+ C + + E G + +
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263
Query: 196 SHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCF 255
+ + S+ N+ + A++ +LDL + E L++ C
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA---LLETEDHCTLIQK--CP 318
Query: 256 ALEELKLNN----NGLG--ITGCKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
LE L+ N GL CK L + + + E +
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE----------GLVSQR 368
Query: 309 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN--DNTITYKGA 366
G L A+ + + LE + + + I + + ++ + + R + L+ +
Sbjct: 369 G---LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 367 IPLGQALSKLPSLAILNLGDC--LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 424
+ L L L G S I +Y + + L S +G ++
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS---PNVRWMLLGYVGESDEGLME 482
Query: 425 LVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
+ N L+++ + F E + + S
Sbjct: 483 FSRGCPN---LQKLEMRGCCFSERAIAAAVTKLPS 514
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 5e-17
Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 362
R+ E + L K +E+ + I L + E + +LR LN+ N +T
Sbjct: 52 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
Query: 363 YKGAIPLGQALSK---LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ L ++ + N +L + + + +N +L V ++ +
Sbjct: 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ + +N +++ + ++
Sbjct: 172 RHRVSE-ALERNYERVRLRRLGKDP 195
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-14
Identities = 22/138 (15%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Query: 2 LAAVFKKLKTLEHVEMPQ-NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
+ + + L+ V + + I +L +A +K + +L + I+ A L +
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV---NLTCNEISVQGGLDLVKA 117
+ PSL +LN+ L + + + ++ + N + + Q +D++ A
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA 152
Query: 118 MKNKTKLKQINVSENQFG 135
++ L ++ +S
Sbjct: 153 IEENESLLRVGISFASME 170
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-14
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 310 AKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368
+ + + L+ V + + I +L +A +K++ +L + I+ A
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89
Query: 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV---NLTCNEISVQGGLDL 425
L + + PSL +LN+ L + + + ++ + N + + Q +D+
Sbjct: 90 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149
Query: 426 VKAMKNKTKLKQINVSENQFG 446
+ A++ L ++ +S
Sbjct: 150 MMAIEENESLLRVGISFASME 170
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 3e-14
Identities = 16/123 (13%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
++ E++ L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKT--KLKQINVSENQFGEEGVEEMEK 144
+ + + +L +N+ N ++ + L+++ ++ + K N ++ G + +M
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 145 LMK 147
++
Sbjct: 152 AIE 154
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-14
Identities = 16/123 (13%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 340 ALSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398
++ E++ +L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK-NKT--KLKQINVSENQFGEEGVEEMEK 455
+ + + +L +N+ N ++ + L+++ ++ + K N ++ G + +M
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151
Query: 456 LMK 458
++
Sbjct: 152 AIE 154
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-08
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 58 LGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116
+ + L +N+ + + S+ + ++ +E +L IS L++
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
++ L+ +NV N E + + +
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-08
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 369 LGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 427
+ + L +N+ + + S+ + ++ +E +L IS L++
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 428 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
++ L+ +NV N E + + +
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLV 124
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 29/124 (23%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L K +E + I L + E + LR LN+ N +T + L ++
Sbjct: 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121
Query: 62 LSK---LPSLAILNLGDCLLKSAGASSIAKYL--------------------------TD 92
+ N +L + + +
Sbjct: 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEALER 181
Query: 93 NTTL 96
N
Sbjct: 182 NYER 185
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALH 280
+ + L++ A GL +L+ +S L L + +N L L ++
Sbjct: 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPS--LRVLNVESNFLTPELLARLLRST- 122
Query: 281 DCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITA 340
S + K ++ L N+ + ++ ++L RV + +
Sbjct: 123 ------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME--ARHR 174
Query: 341 LSDAFEENKNLRHL 354
+S+A E N L
Sbjct: 175 VSEALERNYERVRL 188
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 7e-16
Identities = 64/461 (13%), Positives = 147/461 (31%), Gaps = 70/461 (15%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +LE++ + + + S + L+ LN+ N I L S
Sbjct: 99 SFSGLTSLENLVAVETKLASL----ESFPIGQLITLKKLNVAHNFIHS---CKLPAYFSN 151
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L +L ++L +++ + + + ++++ N I KL
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-----QGIKL 206
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
++ + N +MK+ A + +++ E
Sbjct: 207 HELTLRGNFNSSN-------IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ-SHMSLKT------GARLVELDLSDNAF 237
+ + ++++ S+ ++ ++ + +S+K + L +
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 238 GPIGVEGLADL-------------LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L L + +L L L+ N L +GC
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC------------ 367
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
S + +L+ N +++A F L+ L+ ++ + + +T S A
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI-----IMSANFMGLEELQHLDFQHSTL--KRVTEFS-A 419
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F + L +L+++ G L SL L + K S++ +
Sbjct: 420 FLSLEKLLYLDISYTNTKI---DFDG-IFLGLTSLNTLKMAGNSFKDNTLSNV---FANT 472
Query: 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
T L ++L+ ++ + +L+ +N+S N
Sbjct: 473 TNLTFLDLSKCQLE---QIS-WGVFDTLHRLQLLNMSHNNL 509
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 68/448 (15%), Positives = 137/448 (30%), Gaps = 46/448 (10%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L L ++ + N I +F L +L + + + + +L
Sbjct: 76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLAS---LE-SFPIGQL 127
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L LN+ + S + Y ++ T L V+L+ N I DL +N
Sbjct: 128 ITLKKLNVAHNFIHSC---KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184
Query: 126 QINVSENQFG--EEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
+++S N ++ + KL + + +
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK-- 242
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG-ARLVELDLSDNAFGPIGV 242
D NL + + + + + ++ + A + + L+ +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS------ 296
Query: 243 EGLADLLRSSCCFALEELKLNNNGL-GITGCKLLS-KALHDCY---ESSKKEGSPLALKV 297
+ L F + L + L L K+L S K+ + +L
Sbjct: 297 --IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY 354
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357
RN L G + +L +++ N G +S F + L+HL+
Sbjct: 355 LDLSRNALSFSGCCSYS--DLGTNSLRHLDLSFN-----GAIIMSANFMGLEELQHLDFQ 407
Query: 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 417
+T+ + A L L L++ K T+L + + N
Sbjct: 408 HSTLK---RVTEFSAFLSLEKLLYLDISYTNTK----IDFDGIFLGLTSLNTLKMAGNSF 460
Query: 418 SVQGGLDLVKAMKNKTKLKQINVSENQF 445
L N T L +++S+ Q
Sbjct: 461 K---DNTLSNVFANTTNLTFLDLSKCQL 485
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 72/476 (15%), Positives = 123/476 (25%), Gaps = 119/476 (25%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L A F L L HV++ N I + + L E + L+++ N I + I
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF---IQDQ-- 199
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE--------DVNLTCNEISVQGGLD 113
+ L L L S + + L + NL E S+ GL
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 114 LVK-----------------AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALV 156
V + ++++ + L
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--------KYLEDVPKHFKWQS 311
Query: 157 LEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQ-------SHNNSNQ 209
L ++ + N +
Sbjct: 312 L-----------------------------SIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342
Query: 210 SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGI 269
S L LDLS NA G +DL +S L L L+ NG I
Sbjct: 343 SFKKVALP--------SLSYLDLSRNALSFSGCCSYSDLGTNS----LRHLDLSFNGAII 390
Query: 270 TGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329
+S L+ + L+ + F L+ L +++
Sbjct: 391 -----MSANFMGL----------EELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDIS 432
Query: 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
F +L L + N+ L + +L L+L C L
Sbjct: 433 YTNTKID----FDGIFLGLTSLNTLKMAGNSFKD---NTLSNVFANTTNLTFLDLSKCQL 485
Query: 390 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ L+ +N++ N + LD L ++ S N+
Sbjct: 486 EQISWGV----FDTLHRLQLLNMSHNNLL---FLD-SSHYNQLYSLSTLDCSFNRI 533
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 36/219 (16%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+DLS N + ++ L+ L L+ + + KA H +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSE------LQWLDLSRCEIE----TIEDKAWHGLHH-- 81
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
L I N +++ F L +LE + + + + S
Sbjct: 82 --------LSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASL----ESFPIG 125
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406
+ L+ LN+ N I L S L +L ++L +++ + + +
Sbjct: 126 QLITLKKLNVAHNFIHS---CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
++++ N I KL ++ + N
Sbjct: 183 NLSLDMSLNPIDFIQDQAF-----QGIKLHELTLRGNFN 216
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 60/419 (14%), Positives = 123/419 (29%), Gaps = 80/419 (19%)
Query: 27 ITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86
I + D + KL L L N + + + L L L + L K I
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNS---SNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 87 AKYLT----DNTTLEDVNLTCNEISVQGG-----------LDL-------VKAMKNKTKL 124
+ + T+++ LT + L ++ + K
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ +++ Q + ++ L L L ++G S ++ S
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKS-------LTLTMNKGSISFKKVALPSLSY-------- 354
Query: 185 NSNLSHNDSNHSHNASNQSHNNS-----NQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
+LS N + S S + + S N + + L LD +
Sbjct: 355 -LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ L L L ++ I +L
Sbjct: 414 VTEFSAFLSLEK-----LLYLDISYTNTKI----DFDGIFLGLT----------SLNTLK 454
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
N ++ L+ VF L +++ + + + F+ L+ LN++ N
Sbjct: 455 MAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQIS----WGVFDTLHRLQLLNMSHN 507
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
+ + + ++L SL+ L+ ++ +S +L NLT N ++
Sbjct: 508 NLLF---LDSS-HYNQLYSLSTLDCSFNRIE----TSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 72/475 (15%), Positives = 141/475 (29%), Gaps = 75/475 (15%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
F L+ +++ + I + A++ L L L N I + LG A S L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQS---LALG-AFSGL 99
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
SL L + L S + TL+++N+ N I L + N T L+
Sbjct: 100 SSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLE 152
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLED-------------------DEGECSD 166
+++S N+ ++ L + + +L L D
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Query: 167 EEQDEESEEENDSDAE----GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLK 222
++ + + E + + ++ + N L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 223 TGA-------RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKL 274
+ L + + S F + L+L N KL
Sbjct: 273 DIIDLFNCLTNVSSFSLVSV--------TIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 275 LS-KALHDCYESSKKEGSPL---ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330
S K L S + +L+ RN L +G + +L+ +++
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSF 382
Query: 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390
N G+ +S F + L HL+ + + L +L L++ +
Sbjct: 383 N-----GVITMSSNFLGLEQLEHLDFQHSNLK--QMSEFS-VFLSLRNLIYLDISHTHTR 434
Query: 391 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ ++LE + + N L L +++S+ Q
Sbjct: 435 ----VAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL 482
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 64/463 (13%), Positives = 144/463 (31%), Gaps = 62/463 (13%)
Query: 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 70
+ +++++ N + H+ S +F +L+ L+L+ I A L L+
Sbjct: 29 STKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQ--TIED--GAYQSLSHLST 80
Query: 71 LNLGDCLLKSAGASSIAK-------YLTDN-------------TTLEDVNLTCNEISVQG 110
L L ++S + + + TL+++N+ N I
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--- 137
Query: 111 GLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170
L + N T L+ +++S N+ ++ L + + +L L +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 171 EESE-EENDSDAEGDNSNLSHNDSNHSHNASN--QSHNNSNQSHNTSNQSHMSLKTGARL 227
+E + +N + + + + N N L
Sbjct: 198 KEIRLHKLT---LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 228 VELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG----ITGCKLLSK-ALHDC 282
L + + + + +C + L + + + L +C
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 283 YESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 342
+LK N+ N + L +LE +++ +NG+ G S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCC--S 366
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402
+ +L++L+L+ N + + L L L+ LK S+
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FL 418
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
L ++++ V + L+ + ++ N F
Sbjct: 419 SLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSF 457
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 73/446 (16%), Positives = 135/446 (30%), Gaps = 58/446 (13%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L F L LEH+++ N I + T L + L+L+ N + + I G
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPG-- 195
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
K L L L + + + LE L E +G L+
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTC---IQGLAGLEVHRLVLGEFRNEGNLEKF-DKSAL 251
Query: 122 TKLKQINVSENQF--GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
L + + E + + ++++ L ++ L E + + +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE- 310
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
L + +S + N + S L LDLS N
Sbjct: 311 --------LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSF 361
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
G +D +L+ L L+ NG+ S L+
Sbjct: 362 KGCCSQSD----FGTTSLKYLDLSFNGV---------------ITMSSNFLGLEQLEHLD 402
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+ L+ +VF L+ L +++ + F +L L + N
Sbjct: 403 FQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGN 455
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ ++L +L L+L C L+ ++L+ +N++ N
Sbjct: 456 SFQ--ENFLPD-IFTELRNLTFLDLSQCQLE----QLSPTAFNSLSSLQVLNMSHNNFF- 507
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQF 445
LD K L+ ++ S N
Sbjct: 508 --SLD-TFPYKCLNSLQVLDYSLNHI 530
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 52/395 (13%), Positives = 116/395 (29%), Gaps = 50/395 (12%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG--ASSIAKYLTDNT 94
+L L L +N + + + L L + L ++ G L
Sbjct: 199 EIRLHKLTLRNNFDS--LNVM-KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA- 153
L + D++ T + ++ + +
Sbjct: 256 NLTIEEFRLAYLDYYLD-DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNL-----SHNDSNHSHNASNQSHNNSN 208
S + S + ++ +E D +L S N + S ++
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 209 Q-----SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN 263
S N + +L LD + + + LR+ L L ++
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLDIS 429
Query: 264 NNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323
+ + + + +L+V N + L +F +L+ L
Sbjct: 430 HTHTRV----AFNGIFNGLS----------SLEVLKMAGNSFQEN---FLPDIFTELRNL 472
Query: 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383
+++ Q + + AF +L+ LN++ N L SL +L+
Sbjct: 473 TFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFF--SLDT--FPYKCLNSLQVLD 524
Query: 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
+ ++ + + ++L +NLT N+ +
Sbjct: 525 YSLNHIMTSKKQELQHFP---SSLAFLNLTQNDFA 556
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 90/445 (20%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
F +L L +++ + IY + D F+ +L L L N + + + ALS
Sbjct: 53 FSRLINLTFLDLTRCQIYWIH----EDTFQSQHRLDTLVLTANPLIF---MAET-ALSGP 104
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L + S L + TLE + L N IS + L KLK
Sbjct: 105 KALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHIS---SIKL-PKGFPTEKLK 156
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
++ N E+M L ++ L L
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQA----TNLSL---------------------------- 184
Query: 186 SNLSHN-----DSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240
NL+ N + +A QS N + + T L D I
Sbjct: 185 -NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
L S +E + L + + S H L+
Sbjct: 244 SPAVFEGLCEMS----VESINLQKHYFF----NISSNTFHCFSG----------LQELDL 285
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
L L + L TL+++ + N ++ + +L HL++ NT
Sbjct: 286 TATHLSE-----LPSGLVGLSTLKKLVLSANKFENLC----QISASNFPSLTHLSIKGNT 336
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
+ + G L L +L L+L ++++ ++ L + + L+ +NL+ NE
Sbjct: 337 K--RLELGTG-CLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPL-- 389
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
L +A K +L+ ++++ +
Sbjct: 390 -SLK-TEAFKECPQLELLDLAFTRL 412
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 56/418 (13%), Positives = 119/418 (28%), Gaps = 82/418 (19%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90
+ F L L+L I + I L L L L L
Sbjct: 50 NTTFSRLINLTFLDLTRCQIYW---IHED-TFQSQHRLDTLVLTANPLIF----MAETAL 101
Query: 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE---MEKLMK 147
+ L+ + IS + L N+ L+ + + N + + EKL
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Query: 148 SFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNS 207
L + N+ + + + ++ +
Sbjct: 158 -------LDFQ--------------------------NNAIHYLSKEDMSSLQQATNLSL 184
Query: 208 NQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 267
N + N A L+ + +GL + S L +
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS----LWLGTFEDMDD 240
Query: 268 GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327
+ E S ++ ++ N + + F L+ ++
Sbjct: 241 E----DISPAVFEGLCEMS--------VESINLQKHYFFN----ISSNTFHCFSGLQELD 284
Query: 328 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC 387
+ + + L L+ L L+ N + + S PSL L++
Sbjct: 285 LTATHL-----SELPSGLVGLSTLKKLVLSANKFEN---LC-QISASNFPSLTHLSIKGN 335
Query: 388 LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + L + L +++L+ ++I +L ++N + L+ +N+S N+
Sbjct: 336 TKRLELGTGC---LENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEP 388
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 67/441 (15%), Positives = 129/441 (29%), Gaps = 106/441 (24%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+++L I+ + +NL + I
Sbjct: 224 NSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFF---NISSN-TFHCF 277
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L+L L S + L +TL+ + L+ N+ + N L
Sbjct: 278 SGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLT 328
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDAEGD 184
+++ N E + +++ L L
Sbjct: 329 HLSIKGNTKRLELGTGCLENLEN------LREL--------------------------- 355
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+LSH+D S + Q N S+ L L+LS N + E
Sbjct: 356 --DLSHDDIETSDCCNLQLRNLSH------------------LQSLNLSYNEPLSLKTEA 395
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
+ + LE L L L + + + LH LKV +
Sbjct: 396 FKECPQ------LELLDLAFTRLKVKDAQSPFQNLH-------------LLKVLNLSHSL 436
Query: 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK 364
L+ + +F L L+ + + N +++ + L L L+ ++
Sbjct: 437 LDISSEQ----LFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFCDLSS- 490
Query: 365 GAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLD 424
I A + L + ++L L +S + + +NL N IS +
Sbjct: 491 --ID-QHAFTSLKMMNHVDLSHNRL-----TSSSIEALSHLKGIYLNLASNHIS---IIL 539
Query: 425 LVKAMKNKTKLKQINVSENQF 445
+ ++ + IN+ +N
Sbjct: 540 P-SLLPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 12/130 (9%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ L L+ + + N + ++AF+E +L L+L +
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLK----TEAFKECPQLELLDLAFTRLK---VKDAQSPFQN 423
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L L +LNL LL S + L+ +NL N +G + +++ +L
Sbjct: 424 LHLLKVLNLSHSLLD----ISSEQLFDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRL 478
Query: 125 KQINVSENQF 134
+ + +S
Sbjct: 479 EILVLSFCDL 488
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 14/132 (10%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ F L+ +++ + + L L+ L L+ N + +
Sbjct: 271 SNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFEN---LC-QISA 321
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
S PSL L++ + + L + L +++L+ ++I +L ++N +
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNL--QLRNLS 376
Query: 123 KLKQINVSENQF 134
L+ +N+S N+
Sbjct: 377 HLQSLNLSYNEP 388
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 28/149 (18%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L L+ + + + + F+ L+HLNL N +L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISS----EQLFDGLPALQHLNLQGNHFPKGNIQKTN-SLQT 474
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGG---------LDL 114
L L IL L C L S T + V+L+ N + S L+L
Sbjct: 475 LGRLEILVLSFCDLS----SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530
Query: 115 VK---------AMKNKTKLKQINVSENQF 134
+ ++ + IN+ +N
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPL 559
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 5e-15
Identities = 64/477 (13%), Positives = 145/477 (30%), Gaps = 60/477 (12%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNT-ITYKGAIPLGQ 60
+ A+ LE + + + + + ++ +F K + L L+ + G L
Sbjct: 97 IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF---KNFKVLVLSSCEGFSTDG---LAA 150
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
+ +L L+L + + ++ + T+L +N++C V L + +
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV-SFSALERLVTR 209
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
LK + ++ +E++ L++ LE+ E +
Sbjct: 210 CPNLKSLKLNRA----VPLEKLATLLQRAPQ-----LEELGTGGYTAEVRPDVYSGLSVA 260
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQS---------HNTSNQSHMSLKTGARLVELD 231
G + + A + + S L +L L
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320
Query: 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLS-KALHDCYESSKKE 289
+ D I GL L +S C L EL++ + L+ + L K
Sbjct: 321 VLDY----IEDAGLEVL--ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK- 373
Query: 290 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-------GITALS 342
L+ + ++ N +A + + ++ G A+
Sbjct: 374 -----LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402
E K+LR L+L+ +T K +G + +L++ G +
Sbjct: 429 ---EHCKDLRRLSLS-GLLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLSGCD 481
Query: 403 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459
L + + + L ++ ++ + +S + + + M
Sbjct: 482 S---LRKLEIRDCPFGDKALLANASKLET---MRSLWMSSCSVSFGACKLLGQKMPK 532
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 9e-08
Identities = 60/462 (12%), Positives = 124/462 (26%), Gaps = 87/462 (18%)
Query: 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 98
NL + + S L + L ++ IAK +
Sbjct: 78 HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF---KNFKV 134
Query: 99 VNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVL 157
+ L+ C S G + +N LK++++ E+ + + ++ +L +
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRN---LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191
Query: 158 EDDEGECSDEEQDEES--------EEENDSDAEGDNSNLSHNDSNHSHNASN-QSHNNSN 208
E S E + + A + A +
Sbjct: 192 SCLASEVSFS--ALERLVTRCPNLKSLKLNRAVPLEKLAT-----LLQRAPQLEELGTGG 244
Query: 209 QSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG 268
+ + L + + F L + S C L L L
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY--SVCSRLTTLNL------ 296
Query: 269 ITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL----- 323
+ + S L K L+ + +E+ G ++LA+ K L+ L
Sbjct: 297 -SYATVQSYDLVKLLCQCPK------LQRLWV-LDYIEDAGLEVLASTCKDLRELRVFPS 348
Query: 324 -ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL------ 376
V P + G+ ++S L + +T I + + +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGC---PKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405
Query: 377 --------------------------PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410
L L+L L I Y +E +
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYA---KKMEML 461
Query: 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 452
++ S G + + L+++ + + FG++ +
Sbjct: 462 SVAFAGDSDLG---MHHVLSGCDSLRKLEIRDCPFGDKALLA 500
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 51/297 (17%), Positives = 94/297 (31%), Gaps = 34/297 (11%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQ 60
L+ K L + +G + L + +L LNL+ T+ L +
Sbjct: 256 GLSVALSGCKELRCL----SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVK 308
Query: 61 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL------EDVNLTCNEISVQGGLDL 114
L + P L L + D ++ AG +A D L V ++ QG L
Sbjct: 309 LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---L 364
Query: 115 VKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESE 174
V KL+ + Q + + + + L E + D E +
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT---RFRLCIIEPKAPDYLTLEPLD 421
Query: 175 EENDSDAEGDNS----NLSHNDSNH-----SHNASNQSHNNSNQSHNTSNQSHMSLKTGA 225
+ E +LS ++ A + + ++ H L
Sbjct: 422 IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDC 282
L +L++ D P G + L S + L +++ + CKLL + +
Sbjct: 482 SLRKLEIRDC---PFGDKALLANA--SKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 53/457 (11%), Positives = 116/457 (25%), Gaps = 105/457 (22%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLND--NTITYKGAIPLG 59
L + + L+ +++ + V + L+ + +L L + L
Sbjct: 203 LERLVTRCPNLKSLKLNRA----VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258
Query: 60 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
ALS L L+ G A ++ + L +NL+ + + L+
Sbjct: 259 VALSGCKELRCLS-GFWDAVPAYLPAVYSVC---SRLTTLNLSYATVQSYDLVKLLCQCP 314
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
L+++ V + + G+E + K
Sbjct: 315 K---LQRLWVL-DYIEDAGLEVLASTCK-------------------------------- 338
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
+L S + + + S +L +
Sbjct: 339 -------DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-----KLESVLYFCRQMTN 386
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ +A + +L + L+ D
Sbjct: 387 AALITIA-----RNRPNMTRFRL--CIIEPKAPDYLTLEPLD------------------ 421
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
G + K L+ L + + K + L++
Sbjct: 422 --------IGFGAIVEHCKDLRRL-------SLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ G + LS SL L + DC + A L T+ + ++ +S
Sbjct: 467 GDSDLG---MHHVLSGCDSLRKLEIRDCPFGDKALLANASKL---ETMRSLWMSSCSVSF 520
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
L + M ++ I+ +E++
Sbjct: 521 GACKLLGQKMPK-LNVEVIDERGAPDSRPESCPVERV 556
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 79/485 (16%), Positives = 160/485 (32%), Gaps = 98/485 (20%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+L+ L+ + + N I + + N L+ L L+ N I P
Sbjct: 140 TQVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIK--EFSP--GCFHA 193
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ-----GGLDLVKAMK 119
+ L L L + L + + L NT++ +++L+ +++S GL
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGL------- 245
Query: 120 NKTKLKQINVSENQF---GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
T L +++S N G + + +L LE + + +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-------FFLEYN------------NIQH 286
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA 236
S + N+ + + S + S + + + S + L L++ DN
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS------FQWLKCLEHLNMEDND 340
Query: 237 FGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALK 296
I L+ L+ L L+N+ + ++ S L
Sbjct: 341 IPGIKSNMFTGLIN------LKYLSLSNSFTSLRTLT--NETFVSLAHSP--------LH 384
Query: 297 VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-------GITAL-------- 341
+ +N++ + + F L LE +++ N I G+ +
Sbjct: 385 ILNLTKNKISK----IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 342 ------SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395
++F +L+ L L + + P L +L IL+L + + +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNNNIA----N 494
Query: 396 SIAKYLTDNTTLEDVNLTCNEISV----QGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451
L LE ++L N ++ + +K + L +N+ N F E VE
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 452 EMEKL 456
+ L
Sbjct: 555 VFKDL 559
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 79/446 (17%), Positives = 152/446 (34%), Gaps = 100/446 (22%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L + + N I + ++ F + K L L+L+ N ++ LG +
Sbjct: 92 TFAFCTNLTELHLMSNSIQKI----KNNPFVKQKNLITLDLSHNGLSS---TKLG-TQVQ 143
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
L +L L L + +++ + + + N++L+ + L+ N+I +L
Sbjct: 144 LENLQELLLSNNKIQALKSEELD--IFANSSLKKLELSSNQIKEFSPGCF----HAIGRL 197
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ ++ Q G EKL + L
Sbjct: 198 FGLFLNNVQLGPSL---TEKLCLELANTSIRNL--------------------------- 227
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+LS++ + + N + +N L LDLS N +G +
Sbjct: 228 --SLSNSQLSTTSNTTFLGLKWTN------------------LTMLDLSYNNLNVVGNDS 267
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
A L + LE L N + L S +LH + ++ R+
Sbjct: 268 FAWLPQ------LEYFFLEYNNIQ----HLFSHSLHGLFN----------VRYLNLKRSF 307
Query: 305 LE-----NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+ K+ F+ LK LE + M N I + S+ F NL++L+L+++
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNS 363
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+ + L ILNL + + + + LE ++L NEI
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL----GHLEVLDLGLNEIG- 418
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQF 445
+ + + +I +S N++
Sbjct: 419 --QELTGQEWRGLENIFEIYLSYNKY 442
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 71/432 (16%), Positives = 136/432 (31%), Gaps = 92/432 (21%)
Query: 31 SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90
+D+F +L + L N I +L L ++ LNL K + + + +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQ--HLFS--HSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 91 TDN-----TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
D LE +N+ N+I G+ LK +++S + + +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIP---GIKS-NMFTGLINLKYLSLSNSFTSLRTLT--NET 374
Query: 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND-SNHSHNASNQSH 204
S + +L NL+ N S +A +
Sbjct: 375 FVSLAHSPLHIL-----------------------------NLTKNKISKIESDAFSWLG 405
Query: 205 N------NSNQ-SHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFAL 257
+ N+ + Q L+ + E+ LS N + + A + +L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLE---NIFEIYLSYNKYLQLTRNSFALV------PSL 456
Query: 258 EELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF 317
+ L L L L + N + N + +
Sbjct: 457 QRLMLRRVAL--KNVDSSPSPFQPLR----------NLTILDLSNNNIAN----INDDML 500
Query: 318 KKLKTLERVEMPQNGIYHVGITALS----DAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ L+ LE +++ N + + A + +L LNL N IP+
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE---IPVE-VF 556
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
L L I++LG L + A + +L+ +NL N I+ ++
Sbjct: 557 KDLFELKIIDLGLNNLN----TLPASVFNNQVSLKSLNLQKNLIT---SVEKKVFGPAFR 609
Query: 434 KLKQINVSENQF 445
L ++++ N F
Sbjct: 610 NLTELDMRFNPF 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 80/492 (16%), Positives = 153/492 (31%), Gaps = 86/492 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L+ +E+ N I F +L L LN+ + L L+
Sbjct: 167 IFANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-N 221
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
S+ L+L + L + ++ T L ++L+ N ++V G + +L+
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLG--LKWTNLTMLDLSYNNLNVVGN----DSFAWLPQLE 275
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
+ N + + S + + + + + S + D +
Sbjct: 276 YFFLEYNNI--QHLFS-----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Query: 186 SNL-----SHN-----DSNHSHNASNQSH----NNSNQSHNTSNQSHMSLKTGARLVELD 231
L N SN N + N+ +N++ +SL L L+
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS-PLHILN 387
Query: 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 291
L+ N I + + L LE L L N +G L +
Sbjct: 388 LTKNKISKIESDAFSWLGH------LEVLDLGLNEIGQE---LTGQEWRGL--------- 429
Query: 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351
+ N+ + F + +L+R+ + + + + + F+ +NL
Sbjct: 430 -ENIFEIYLSYNKYLQ----LTRNSFALVPSLQRLMLRRVALK--NVDSSPSPFQPLRNL 482
Query: 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS----AGASSIAKYLTDNTTL 407
L+L++N I I L L L IL+L L A +L + L
Sbjct: 483 TILDLSNNNIAN---INDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 408 EDVNLTCNEISVQGG-----------LDL---------VKAMKNKTKLKQINVSENQFGE 447
+NL N +DL N+ LK +N+ +N
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 448 EGVEEMEKLMKS 459
+ ++
Sbjct: 599 VEKKVFGPAFRN 610
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 65/431 (15%), Positives = 127/431 (29%), Gaps = 88/431 (20%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAI-----P 57
F L LE+ + N I H+ S + +R+LNL + ++
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 58 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117
+ L L LN+ D + ++ L+ ++L+ + S++ +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG----LINLKYLSLSNSFTSLRTLTNETFV 376
Query: 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEE 176
+ L +N+++N+ + + +F L VL
Sbjct: 377 SLAHSPLHILNLTKNKISKIESD-------AFSWLGHLEVL------------------- 410
Query: 177 NDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQ----SHN-TSNQSHMSLKTGARLVELD 231
+L N+ + S+N + S L L
Sbjct: 411 ----------DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS 291
L A V+ + L L L+NN + + L
Sbjct: 461 LRRVALK--NVDSSPSPFQP--LRNLTILDLSNNNIA----NINDDMLEGLE-------- 504
Query: 292 PLALKVFIAGRNRL----ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEE 347
L++ N L ++ K L L + + NG + + F++
Sbjct: 505 --KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP----VEVFKD 558
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
L+ ++L N + +P + SL LNL L+ S L
Sbjct: 559 LFELKIIDLGLNNLNT---LP-ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF---RNL 611
Query: 408 EDVNLTCNEIS 418
++++ N
Sbjct: 612 TELDMRFNPFD 622
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 38/226 (16%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ L+L+ N + + L L + N + KL +
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQ------LTSLDVGFNTIS----KLEPELCQKLPM-- 74
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFE 346
LKV N L + F L + + N I + ++ F
Sbjct: 75 --------LKVLNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKI----KNNPFV 118
Query: 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406
+ KNL L+L+ N ++ LG +L +L L L + +++ + + + N++
Sbjct: 119 KQKNLITLDLSHNGLSS---TKLG-TQVQLENLQELLLSNNKIQALKSEELD--IFANSS 172
Query: 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEE 452
L+ + L+ N+I +L + ++ Q G E+
Sbjct: 173 LKKLELSSNQIKEFSPGCF----HAIGRLFGLFLNNVQLGPSLTEK 214
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 35/220 (15%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
+L LD+ N + E L L+ L L +N L +L K C
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPM------LKVLNLQHNELS----QLSDKTFAFC--- 96
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L N ++ K+ F K K L +++ NG+
Sbjct: 97 -------TNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTK----LGTQ 141
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +NL+ L L++N I + SL L L +K
Sbjct: 142 VQLENLQELLLSNNKIQ--ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA----IG 195
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
L + L ++ L + N T ++ +++S +Q
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQL 234
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 16/132 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
AA F + L +++ N I + + ++ L+ LNL N ++ +
Sbjct: 42 AANFTRYSQLTSLDVGFNTISKLE----PELCQKLPMLKVLNLQHNELS---QLSDK-TF 93
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ +L L+L ++ L ++L+ N +S L
Sbjct: 94 AFCTNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLS---STKL-GTQVQLE 145
Query: 123 KLKQINVSENQF 134
L+++ +S N+
Sbjct: 146 NLQELLLSNNKI 157
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 71/445 (15%), Positives = 148/445 (33%), Gaps = 54/445 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+VFK + LE++++ N + + L+HL+L+ N A+P+ +
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKISCHPT-------VNLKHLDLSFNAFD---ALPICKEF 111
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ L L L L+ + IA L + L + T E GL
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
S A L L + + D +
Sbjct: 171 VFPTNKEFHFILD-----------VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ-SHMSLKTGARLVELDLSDNAFGPIG 241
SNL+ N+ + N+ + + S++ L+ + D S + +
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 242 VEGLA-DLLRSSCCFALEEL-KLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ + D+ + E +N ++G +++
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS---------KISPFLHLD 330
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
N L + L LE + + N + ++ +++ + K+L+ L+++ N
Sbjct: 331 FSNNLL----TDTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQN 384
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
+++Y S SL LN+ +L +I + L ++ ++L N+I
Sbjct: 385 SVSY---DEKKGDCSWTKSLLSLNMSSNILT----DTIFRCLPPR--IKVLDLHSNKIKS 435
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ K + L+++NV+ NQ
Sbjct: 436 -----IPKQVVKLEALQELNVASNQ 455
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 56/441 (12%), Positives = 133/441 (30%), Gaps = 62/441 (14%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
I+ L + KLR L ++ N I + + L L+L L
Sbjct: 33 ISELWTSDILSLSKLRILIISHNRIQ---YLDIS-VFKFNQELEYLDLSHNKLVKISCHP 88
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
L+ ++L+ N L + K N ++LK + +S + V + L
Sbjct: 89 T-------VNLKHLDLSFNAFDA---LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 146 --MKSFGMAAALVLEDDEGE----CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199
K + E ++ E + E + D S + + S+
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 200 SNQSHNNSNQSHNT-SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALE 258
N + + + + L ++ + N+F + L + ++ +
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF----IRILQLVWHTT----VW 250
Query: 259 ELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAG---------RNRLENE 308
++N L G + + S + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 309 GAKMLAA-VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAI 367
G +M+ K+ ++ N + + + L L L N + +
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLK---EL 363
Query: 368 P-LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS--VQGGLD 424
+ + +++ SL L++ + + +L +N++ N ++ + L
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT---KSLLSLNMSSNILTDTIFRCLP 420
Query: 425 LVKAMKNKTKLKQINVSENQF 445
++K +++ N+
Sbjct: 421 --------PRIKVLDLHSNKI 433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 57/446 (12%), Positives = 141/446 (31%), Gaps = 75/446 (16%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLG 59
+ ++F L L+ + + + + F L L + ++
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVET----FSEIRRIDFAGLTSLNELEIKALSLRN---YQSQ 166
Query: 60 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
+L + + L L +++ + L ++ L
Sbjct: 167 -SLKSIRDIHHLTLHLSESAFLLEIF----ADILSSVRYLELRDTNLARFQFSPLPVDEV 221
Query: 120 NKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDS 179
+ + +K++ + +E E+ KL++ + + +D C+ + + E+D
Sbjct: 222 S-SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD----CTLNGLGDFNPSESDV 276
Query: 180 DAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239
+E H +T +K + + ++
Sbjct: 277 VSELGKVETVTIRRLHI------PQFYLFYDLSTVYSLLEKVK------RITVENSKVFL 324
Query: 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299
+ L LE L L+ N + K +S +G+ +L+ +
Sbjct: 325 VPCSFSQHLKS------LEFLDLSENLMVEEYLK-----------NSACKGAWPSLQTLV 367
Query: 300 AGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
+N L + + LK L +++ +N + D+ + + +R LNL+
Sbjct: 368 LSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSST 420
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419
I + +L +L++ + L S + +L L+++ ++ N++
Sbjct: 421 GIR---VVKTCI----PQTLEVLDVSNNNL-----DSFSLFLPR---LQELYISRNKLKT 465
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQF 445
+ L + +S NQ
Sbjct: 466 ------LPDASLFPVLLVMKISRNQL 485
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 63/448 (14%), Positives = 137/448 (30%), Gaps = 73/448 (16%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ L+ + + + I + DAF L HL+L+DN ++ ++
Sbjct: 43 HGDLRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLS---SLSSS-WF 94
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNK 121
L SL LNL ++ G +S+ L T L+ + + S +D
Sbjct: 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNL---TNLQTLRIGNVETFSEIRRIDF----AGL 147
Query: 122 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE---ESEEEND 178
T L ++ + + ++ + L L E E +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRD----IHHLTLHLSESAFLLEIFADILSSVRYLEL 203
Query: 179 SDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGA-RLVELDLSDNAF 237
D S + + + + + S + L L E++ D
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 238 GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
+G ++ S +E + + +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIP----------------------------- 294
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357
+ L+ V+ L+ ++R+ + + ++ V + K+L L+L+
Sbjct: 295 --------QFYLFYDLSTVYSLLEKVKRITVENSKVFLVP----CSFSQHLKSLEFLDLS 342
Query: 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 417
+N + + PSL L L L+S + L L ++++ N
Sbjct: 343 ENLMVEEYLKNSA-CKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTF 399
Query: 418 SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + + K++ +N+S
Sbjct: 400 H-----PMPDSCQWPEKMRFLNLSSTGI 422
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 33/246 (13%), Positives = 73/246 (29%), Gaps = 37/246 (15%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L + I + L LE L L++N L L S
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGS------LEHLDLSDNHLS----SLSSSWFGPLS-- 98
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DA 344
+LK N + + ++F L L+ + + + +
Sbjct: 99 --------SLKYLNLMGNPYQTL---GVTSLFPNLTNLQTLRIGNVET----FSEIRRID 143
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F +L L + ++ +L + + L L
Sbjct: 144 FAGLTSLNELEIKALSLRN---YQSQ-SLKSIRDIHHLTLHLSESAFLLEIF----ADIL 195
Query: 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464
+++ + L ++ L + + +K++ + +E E+ KL++ +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 465 ALVLED 470
+ +D
Sbjct: 255 EVEFDD 260
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 68.4 bits (166), Expect = 1e-12
Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 257 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAV 316
L+ L++ + GL + + + + E L +++ + + + +
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEK---------LVLYVGVEDYGFDGDMNVFRPL 245
Query: 317 FK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F + L+ + + +V + ++ + L ++++ +T +GA L +
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411
K+ L +N+ L + K L + D
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 68.1 bits (165), Expect = 1e-12
Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 23/249 (9%)
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273
N+ + G ++D + I L+ +L + LNN + T
Sbjct: 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM-------PLLNNLKIKGTNNL 185
Query: 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNG 332
+ K LK L + + + + L+ L ++
Sbjct: 186 SIGKKPRPN------------LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233
Query: 333 IYHVGITALSDAFEENK--NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390
+ + F +++ NL+ L + D ++ LP L +++ +L
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLT 292
Query: 391 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 450
GA + ++ L+ +N+ N +S + +L K++ K + ++ + +
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSYPMI 352
Query: 451 EEMEKLMKS 459
E+E
Sbjct: 353 TELEHHHHH 361
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 65.0 bits (157), Expect = 1e-11
Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 3/150 (2%)
Query: 1 MLAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK--KLRHLNLNDNTITYKGAIPL 58
+L + L+ L ++ + + F +++ L+ L + D
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272
Query: 59 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118
++ LP L +++ +L GA + ++ L+ +N+ N +S + +L K++
Sbjct: 273 LES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331
Query: 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKS 148
K + ++ + + E+E
Sbjct: 332 PMKIDVSDSQEYDDDYSYPMITELEHHHHH 361
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 8e-06
Identities = 29/261 (11%), Positives = 71/261 (27%), Gaps = 16/261 (6%)
Query: 205 NNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN 264
K + GV + +L+ +L+++ +
Sbjct: 57 IAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGX 116
Query: 265 NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324
G C ++ + + E L + L+ V + L
Sbjct: 117 WGYEGEDCSDIADGIVENKEKFAHF-EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+++ LS + NL+ L + + + S LP+L L L
Sbjct: 176 NLKIKGT-------NNLSIGKKPRPNLKSLEIISGGLPDSVVEDI--LGSDLPNLEKLVL 226
Query: 385 ---GDCLLKSAGASSIAKYLTDNT--TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 439
+ + + + L+ + + E +++ L+ ++
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMD 285
Query: 440 VSENQFGEEGVEEMEKLMKSF 460
+S +EG + +
Sbjct: 286 ISAGVLTDEGARLLLDHVDKI 306
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 2e-05
Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 15/153 (9%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
L+ V + L ++++ LS + L+ L + + +
Sbjct: 164 LSPVLDAMPLLNNLKIKGT-------NNLSIGKKPRPNLKSLEIISGGLPDSVVEDI--L 214
Query: 62 LSKLPSLAILNL---GDCLLKSAGASSIAKYLTDNT--TLEDVNLTCNEISVQGGLDLVK 116
S LP+L L L + + + + L+ + + E ++
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 149
+ L+ +++S +EG + +
Sbjct: 275 SDILPQ-LETMDISAGVLTDEGARLLLDHVDKI 306
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 75/445 (16%), Positives = 137/445 (30%), Gaps = 105/445 (23%)
Query: 27 ITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLG-----------------------QAL 62
I L +F + L+ L + T I A
Sbjct: 42 IAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ L +L +L L C L A S + T+LE + L N I + N
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMR 154
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
+ ++++ N+ S E
Sbjct: 155 RFHVLDLTFNKV-------------------------------------------KSICE 171
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGV 242
D N +S + + + + + + LDLS N F
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNE--YWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229
Query: 243 EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302
+ D + + ++ L L+N+ + D + K +K +
Sbjct: 230 KRFFDAIAGTK---IQSLILSNSYNMGSSFG--HTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTI 361
+++ +L +VF LE++ + QN I + D AF +L LNL+ N +
Sbjct: 285 SKI----FALLKSVFSHFTDLEQLTLAQN-----EINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQ 420
+I L L +L+L +++ G S L+++ L N++ SV
Sbjct: 336 G---SIDSR-MFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALDTNQLKSVP 387
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
G T L++I + N +
Sbjct: 388 DG-----IFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 72/445 (16%), Positives = 131/445 (29%), Gaps = 112/445 (25%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F +L+ L+ +++ Q G+ ++ F L L L+ N + G A
Sbjct: 47 ETSFSRLQDLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFL---QLETG-AF 99
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+ L +L +L L C L A S + T+LE + L N I + N
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMR 154
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
+ ++++ N+ S E
Sbjct: 155 RFHVLDLTFNKV-------------------------------------------KSICE 171
Query: 183 GDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGV 242
D N +S + + + + + + LDLS N F
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNE--YWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229
Query: 243 EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302
+ D + + ++ L L+N+ +
Sbjct: 230 KRFFDAIAGTK---IQSLILSNSYNMGSSFG----------------------------- 257
Query: 303 NRLENEGAKMLAAVFKKLKT--LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
FK L+ ++ ++ ++ I+ + F +L L L N
Sbjct: 258 ---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL----KSVFSHFTDLEQLTLAQNE 310
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SV 419
I I A L L LNL L S + L LE ++L+ N I ++
Sbjct: 311 IN---KIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFEN-L---DKLEVLDLSYNHIRAL 362
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ LK++ + NQ
Sbjct: 363 GDQ-----SFLGLPNLKELALDTNQ 382
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 61/388 (15%), Positives = 116/388 (29%), Gaps = 83/388 (21%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L LE + + Q + ++ + F+ L L L DN I I
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKK---IQPASFF 150
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS----VQGGLDLVKAM 118
+ +L+L +KS + + L+ + G +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEND 178
T + +++S N F E + +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAI-------------------------------- 236
Query: 179 SDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238
+ + ++S+N S + N + L + + DLS +
Sbjct: 237 -----AGTKIQSLILSNSYNMG--SSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIF 288
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVF 298
+ + LE+L L N + K+ A L
Sbjct: 289 ALLKSVFSHFTD------LEQLTLAQNEI----NKIDDNAFWGLTH----------LLKL 328
Query: 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358
+N L + + + +F+ L LE +++ N I +G +F NL+ L L+
Sbjct: 329 NLSQNFLGS----IDSRMFENLDKLEVLDLSYNHIRALG----DQSFLGLPNLKELALDT 380
Query: 359 NTITYKGAIPLGQALSKLPSLAILNLGD 386
N + ++P G +L SL + L
Sbjct: 381 NQLK---SVPDG-IFDRLTSLQKIWLHT 404
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 34/227 (14%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A + +DLS N+ + + L L+ LK+ G+ + +
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQ------DLQFLKVEQQTPGLV---IRNNTFRGLSS 80
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L + N+ + F L LE + + Q + ++ +
Sbjct: 81 ----------LIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCNLDGAVLSG--NF 124
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F+ +L L L DN I I + +L+L +KS +
Sbjct: 125 FKPLTSLEMLVLRDNNIKK---IQPASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQG 179
Query: 405 TTLEDVNLTCNEIS----VQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ L+ + G + T + +++S N F E
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-10
Identities = 63/440 (14%), Positives = 135/440 (30%), Gaps = 138/440 (31%)
Query: 77 LLKSAGASSIAKYLTDNTTLE-DVNLTCNEISVQGGLDLVKAMKNKTKLKQINV--SENQ 133
L S + K++ + L + + I + +M + ++Q + ++NQ
Sbjct: 70 TLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTE---QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 134 -FGEEGV---EEMEKLMKS------------FGMA-------AALVLEDDE--------- 161
F + V + KL ++ G+ A V +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 162 -----GECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ 216
C+ E E + L + + + S+ S N + H+ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQ-----------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 217 --SHMSLKTGAR--LVELDLSD----NAFGPIGV--------EGLADLLRSSCCFALEEL 260
+ K LV L++ + NAF + + + D L ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAA---TTTHI 289
Query: 261 KLNNNGLGIT---GCKLLSKALHDCYESSKKE---GSPLALKVFIA----GRNRLEN--- 307
L+++ + +T LL K L + +E +P L + G +N
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 308 -EGAKMLAAVFKKLKTLERVEMPQNGIYH-VGITALSDAFEENKNLRHLNLNDNTITYKG 365
K+ + L LE E + + + + F + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKM--FDRLSV------FPPSAH--------------- 386
Query: 366 AIPLGQALSKL-----PSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVNLTCNEISV 419
IP LS + S ++ + S + K ++T ++ +
Sbjct: 387 -IPT-ILLSLIWFDVIKSDVMVVVNKLHKYSL----VEKQPKESTISIPSIY-------- 432
Query: 420 QGGLDLVKAMKNKTKL-KQI 438
L+L ++N+ L + I
Sbjct: 433 ---LELKVKLENEYALHRSI 449
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
LDL N + + A LEEL+LN N + + A ++ +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPH------LEELELNENIVS----AVEPGAFNNLF- 80
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L+ NRL+ + VF L L ++++ +N I + L
Sbjct: 81 ---------NLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVIL----LDYM 123
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
F++ NL+ L + DN + Y I A S L SL L L C L S + L+
Sbjct: 124 FQDLYNLKSLEVGDNDLVY---ISHR-AFSGLNSLEQLTLEKCNLTSIPTEA----LSHL 175
Query: 405 TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSENQF 445
L + L I+ ++ + K +LK + +S +
Sbjct: 176 HGLIVLRLRHLNINAIRDY-----SFKRLYRLKVLEISHWPY 212
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
VF L L +++ +N I + L F++ L+ L + DN + Y I A
Sbjct: 97 LGVFTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVY---ISHR-AF 148
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS-VQGGLDLVKAMKNK 121
S L SL L L C L S + L+ L + L I+ ++ + K
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEA----LSHLHGLIVLRLRHLNINAIRDY-----SFKRL 199
Query: 122 TKLKQINVSENQF 134
+LK + +S +
Sbjct: 200 YRLKVLEISHWPY 212
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 54/203 (26%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS-----KALH 280
L +L L I E L+ L L L+L + + K L
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHG------LIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 281 DCYESSKKEGSP-----LALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGI 333
+ +P L L L A + L L + + N I
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA------VRHLVYLRFLNLSYNPI 260
Query: 334 YHVG-------------------ITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ + + AF LR LN++ N +T +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT---TLEES-VF 316
Query: 374 SKLPSLAILNLG------DCLLK 390
+ +L L L DC L
Sbjct: 317 HSVGNLETLILDSNPLACDCRLL 339
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F LE +E+ +N + V AF LR L L N + IPLG
Sbjct: 49 QDEFASFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLK---LIPLG-VF 100
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
+ L +L L++ + + D L+ + + N++
Sbjct: 101 TGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLV 141
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 18/133 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
FK+L L+ +E+ + ++ L L++ +T A+P A+
Sbjct: 193 DYSFKRLYRLKVLEISHWPY----LDTMTPNCLYGLNLTSLSITHCNLT---AVPYL-AV 244
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L LNL + + S L + L+++ L ++ V+ A +
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSM----LHELLRLQEIQLVGGQLAVVEPY-----AFRGL 295
Query: 122 TKLKQINVSENQF 134
L+ +NVS NQ
Sbjct: 296 NYLRVLNVSGNQL 308
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 22/136 (16%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ L + + + V A LR LNL+ N I+ I
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVP----YLAVRHLVYLRFLNLSYNPIST---IEGS-M 267
Query: 62 LSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAM 118
L +L L + L L A L +N++ N++ +++
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYA------FRGLNYLRVLNVSGNQLTTLEES-----VF 316
Query: 119 KNKTKLKQINVSENQF 134
+ L+ + + N
Sbjct: 317 HSVGNLETLILDSNPL 332
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 31/226 (13%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ L S N + + ++ + + + + + N +G + S
Sbjct: 621 VEGLGFSHNKL-----KYIPNIFNAKSVYVMGSVDFSYNKIG---------SEGRNISCS 666
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN---GIYHVGITALSD 343
+ + N ++ K +F + + + N I +
Sbjct: 667 MDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
++ L ++L N +T + + LP L+ +++ SS +
Sbjct: 723 NYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLSNMDVSYNCF-----SSFPTQPLN 774
Query: 404 NTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVSENQFGE 447
++ L+ + + + + L Q+ + N +
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 57/432 (13%), Positives = 112/432 (25%), Gaps = 99/432 (22%)
Query: 2 LAAVFKKLKTLEHVEMPQNGI-----YHVGITALSDAFEENKKLRHLNLNDNTITYKGAI 56
L L L+ + + N T L+D + K++ + N +
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EF 563
Query: 57 PLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116
P +L K+ L +L+ ++ A N L D+ L N+I +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEA------FGTNVKLTDLKLDYNQIE---EIP-ED 613
Query: 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEE 176
+++ + S N+ + + F + V+
Sbjct: 614 FCAFTDQVEGLGFSHNKL--------KYIPNIFNAKSVYVMG------------------ 647
Query: 177 NDSDAEGDNSNLSHN--DSNHSHNASNQSHNNSNQ------SHNT-SNQSHMSLKTGARL 227
+ + S+N S + + + S+N TG+ +
Sbjct: 648 --------SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 228 VELDLSDNAFGPIGVEGLADLLRS-SCCFALEELKLNNNGL-----GITGCKLLSKALHD 281
+ LS+N I L + + L + L N L L
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY----- 754
Query: 282 CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG--IT 339
L N + L+ + +
Sbjct: 755 -------------LSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
+L L + N I + P L IL++ D S +S+
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRK---VD----EKLTPQLYILDIADNPNISIDVTSVCP 849
Query: 400 YLTDNTTLEDVN 411
Y+ + +
Sbjct: 850 YIEAGMYVLLYD 861
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 40/291 (13%), Positives = 84/291 (28%), Gaps = 37/291 (12%)
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
D N + ++ + + N + + +Q + L R+ L L+ +
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341
Query: 244 GLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVF 298
+ L L+ L + +L + + + L
Sbjct: 342 AIGQLTE------LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395
Query: 299 IAGR--NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356
+ L++ + K + ++ Q G IT +S A + L+ +
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455
Query: 357 NDNTITY---------------KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401
++ TY K + S L L + L +C + + +L
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM----TQLPDFL 511
Query: 402 TDNTTLEDVNLTCNEIS-----VQGGLDLVKAMKNKTKLKQINVSENQFGE 447
D L+ +N+ CN L K++ + N E
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 68/420 (16%), Positives = 133/420 (31%), Gaps = 59/420 (14%)
Query: 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92
+ N ++ L+L G +P A+ +L L +L+ G +G + LT
Sbjct: 318 DLDNNGRVTGLSLAGFGAK--GRVP--DAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373
Query: 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 152
+ + E + +L ++ ++ MK
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYD-------QRLNLSDLLQDAINR------NPEMKPIKKD 420
Query: 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNL-----SHNDSNHSHNASNQSHNNS 207
+ + L+D + S+ + L +++ + + A + NS
Sbjct: 421 SRISLKDTQIGNLTNRITFISKA------IQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474
Query: 208 NQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL 267
+ + N+ S L +++L + + L DL L+ L + N
Sbjct: 475 DYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQLPDFLYDLPE------LQSLNIACNRG 527
Query: 268 -GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326
K L D ++ K +++F G N LE A +A +K+ L +
Sbjct: 528 ISAAQLKADWTRLADDEDTGPK------IQIFYMGYNNLEEFPA---SASLQKMVKLGLL 578
Query: 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ N + H+ +AF N L L L+ N I IP + + L
Sbjct: 579 DCVHNKVRHL------EAFGTNVKLTDLKLDYNQIE---EIP-EDFCAFTDQVEGLGFSH 628
Query: 387 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
LK + V+ + N+I S + + +S N+
Sbjct: 629 NKLKY---IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 58/389 (14%), Positives = 108/389 (27%), Gaps = 96/389 (24%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
A +K+ L ++ N + H+ +AF N KL L L+ N I IP +
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIE---EIP-EDFCA 616
Query: 64 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKT 122
+ L LK + V+ + N+I S +
Sbjct: 617 FTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDA 181
+ +S N+ + E F + + +
Sbjct: 674 NASTVTLSYNEIQKFPTE-------LFATGSPISTI------------------------ 702
Query: 182 EGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG 241
LS+N ++ N+ + K L +DL N
Sbjct: 703 -----ILSNN-------------LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL---- 740
Query: 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
L+D R++ L + ++ N + +S + LK F
Sbjct: 741 -TSLSDDFRATTLPYLSNMDVSYNCF---------SSFPTQPLNSSQ------LKAFGIR 784
Query: 302 RNRL--ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN 359
R N + +L ++++ N I V L L++ DN
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP-------QLYILDIADN 837
Query: 360 TITYKGAIPLGQALSKLPSLAILNLGDCL 388
+I + + + + L D
Sbjct: 838 PNI---SIDVTSVCPYIEAGMYVLLYDKT 863
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 57/457 (12%), Positives = 128/457 (28%), Gaps = 56/457 (12%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
L L + + N I +L F N+ L +L+++ N + I
Sbjct: 70 PDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQ---NISCC--- 118
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ--GGLDLVKAMKN 120
+ SL L+L LT L + L+ + + +
Sbjct: 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTK---LTFLGLSAAKFRQLDLLPVAHLHLSCI 174
Query: 121 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSD 180
L ++ + + L F + ++ + + + ++
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG-----HLQLSNIK 229
Query: 181 AEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKT--GARLVELDLSDNAFG 238
+N + + T S + + L++ +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGI----TGCKLLSKALHDCYESSKK------ 288
++ +L + N + S
Sbjct: 290 ERIDREEFTYSETAL-KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348
Query: 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN 348
SP + +N + LK L+ + + +NG+
Sbjct: 349 PPSPSSFTFLNFTQNVFT----DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALMT 399
Query: 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE 408
KN+ L D ++ + + + S+ +LNL +L S+ + L ++
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPK--VK 453
Query: 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
++L N I + K + + L+++NV+ NQ
Sbjct: 454 VLDLHNNRIM-----SIPKDVTHLQALQELNVASNQL 485
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 47/222 (21%), Positives = 80/222 (36%), Gaps = 45/222 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
+ L+L +N I + L LE L+L N + ++ A +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHH------LEVLQLGRNSIR----QIEVGAFNGLA- 123
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
+L N L + + F+ L L + + N I + S A
Sbjct: 124 ---------SLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIESIP----SYA 166
Query: 345 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F +L L+L + + Y I G A L +L LNLG C +K LT
Sbjct: 167 FNRVPSLMRLDLGELKKLEY---ISEG-AFEGLFNLKYLNLGMCNIKDMPN------LTP 216
Query: 404 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
LE++ ++ N ++ G + + LK++ V +Q
Sbjct: 217 LVGLEELEMSGNHFPEIRPG-----SFHGLSSLKKLWVMNSQ 253
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 42/226 (18%), Positives = 71/226 (31%), Gaps = 53/226 (23%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L+L DN I L + L EL L NN + + S A +
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSK------LRELWLRNNPIE----SIPSYAFNRVP-- 171
Query: 286 SKKEGSPLALKV-FIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS 342
+L + +LE EGA F+ L L+ + + I +
Sbjct: 172 --------SLMRLDLGELKKLEYISEGA------FEGLFNLKYLNLGMCNIKDM------ 211
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKY 400
L L ++ N I G + L SL L + + + A
Sbjct: 212 PNLTPLVGLEELEMSGNHFPE---IRPG-SFHGLSSLKKLWVMNSQVSLIERNA------ 261
Query: 401 LTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
+L ++NL N + S+ L ++++ N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHD-----LFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 41/184 (22%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN------------GLGITGCK 273
+L EL L +N I + L L L GL
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPS------LMRLDLGELKKLEYISEGAFEGLF----N 197
Query: 274 LLSKALHDCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332
L L C +PL L+ N + F L +L+++ + +
Sbjct: 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQ 253
Query: 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------D 386
+ + +AF+ +L LNL N ++ ++P + L L L+L D
Sbjct: 254 VSLIE----RNAFDGLASLVELNLAHNNLS---SLPHD-LFTPLRYLVELHLHHNPWNCD 305
Query: 387 CLLK 390
C +
Sbjct: 306 CDIL 309
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
F+ L LE +++ +N I + AF L L L DN +T IP G A L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIE----VGAFNGLASLNTLELFDNWLTV---IPSG-AFEYL 146
Query: 66 PSLAILNLGDCLLKS 80
L L L + ++S
Sbjct: 147 SKLRELWLRNNPIES 161
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +L+ + + + + + +AF+ L LNL N ++ ++P +
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLS---SLPHD-LFTP 288
Query: 65 LPSLAILNLG------DCLLK 79
L L L+L DC +
Sbjct: 289 LRYLVELHLHHNPWNCDCDIL 309
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L +L +E+ N + + S AFE KLR L L +N I +IP A ++
Sbjct: 118 AFNGLASLNTLELFDNWLTVIP----SGAFEYLSKLRELWLRNNPIE---SIPSY-AFNR 169
Query: 65 LPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 123
+PSL L+LG+ L+ + L+ +NL I + +
Sbjct: 170 VPSLMRLDLGELKKLEYISEGA----FEGLFNLKYLNLGMCNIKD------MPNLTPLVG 219
Query: 124 LKQINVSENQF 134
L+++ +S N F
Sbjct: 220 LEELEMSGNHF 230
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L LE +EM N + +F L+ L + ++ ++ I A L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSL---IERN-AFDGL 265
Query: 66 PSLAILNLGDCLLKS 80
SL LNL L S
Sbjct: 266 ASLVELNLAHNNLSS 280
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 44/225 (19%), Positives = 72/225 (32%), Gaps = 49/225 (21%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L N I L LE+L L++N + + H
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLAL------LEQLDLSDNAQ-LR--SVDPATFHGLG-- 105
Query: 286 SKKEGSPLALKVFIAGRNRLEN--EGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L R L+ G F+ L L+ + + N + + D
Sbjct: 106 --------RLHTLHLDRCGLQELGPGL------FRGLAALQYLYLQDNALQALP----DD 147
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYL 401
F + NL HL L+ N I+ +P A L SL L L + A
Sbjct: 148 TFRDLGNLTHLFLHGNRISS---VPER-AFRGLHSLDRLLLHQNRVAHVHPHA------F 197
Query: 402 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQF 445
D L + L N + ++ A+ L+ + +++N +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-----ALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 47/224 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
A + L N + L L L++N L ++ + A
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRN------LTILWLHSNVLA----RIDAAAFTGLA- 80
Query: 285 SSKKEGSPLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L+ N +L + + A F L L + + + G+ +G
Sbjct: 81 ---------LLEQLDLSDNAQLRS----VDPATFHGLGRLHTLHLDRCGLQELG----PG 123
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYL 401
F L++L L DN + +P L +L L L + S A
Sbjct: 124 LFRGLAALQYLYLQDNALQA---LPDD-TFRDLGNLTHLFLHGNRISSVPERA------F 173
Query: 402 TDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+L+ + L N + V A ++ +L + + N
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPH-----AFRDLGRLMTLYLFANN 212
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
A F L L + + + G+ +G F L++L L DN + +P
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQA---LPDD-TF 149
Query: 63 SKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 119
L +L L L + S A +L+ + L N + V A +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERA------FRGLHSLDRLLLHQNRVAHVHPH-----AFR 198
Query: 120 NKTKLKQINVSENQ 133
+ +L + + N
Sbjct: 199 DLGRLMTLYLFANN 212
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L +L+ + + QN + HV AF + +L L L N ++ A+P AL+
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLS---ALPTE-ALAP 223
Query: 65 LPSLAILNLGD 75
L +L L L D
Sbjct: 224 LRALQYLRLND 234
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 75/442 (16%), Positives = 139/442 (31%), Gaps = 120/442 (27%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L + + + + + ++ L + I +I + L
Sbjct: 20 DTALAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIK---SID---GVEYL 67
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L +N + L L + T L D+ + N+I+ + + N T L
Sbjct: 68 NNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIAD------ITPLANLTNLT 115
Query: 126 QINVSENQFGE-EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ + NQ + + ++ + L + L L
Sbjct: 116 GLTLFNNQITDIDPLKNLTNLNR-------LEL--------------------------- 141
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+SN + S S S Q + NQ + ++++ L LD+S N +
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT-----TLERLDISSNKV--SDISV 194
Query: 245 LADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303
LA L LE L NN + IT +L+ L N
Sbjct: 195 LAKLTN------LESLIATNNQISDITPLGILTN-----------------LDELSLNGN 231
Query: 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363
+L++ G L L +++ N I ++ L L L N I+
Sbjct: 232 QLKDIGT------LASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISN 279
Query: 364 KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL 423
I L+ L +L L L + L+ +++ L + L N IS +
Sbjct: 280 ---IS---PLAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISPV 327
Query: 424 DLVKAMKNKTKLKQINVSENQF 445
+ TKL+++ N+
Sbjct: 328 ------SSLTKLQRLFFYNNKV 343
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 82/420 (19%), Positives = 139/420 (33%), Gaps = 100/420 (23%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L + + N I + D + L L L+ NTI+ I ALS L
Sbjct: 108 LANLTNLTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD---IS---ALSGL 155
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
SL L+ G+ + L + TTLE ++++ N++S + + T L+
Sbjct: 156 TSLQQLSFGNQVTDLKP-------LANLTTLERLDISSNKVSD------ISVLAKLTNLE 202
Query: 126 QINVSENQF-GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ + NQ + + L + L L ++ + D
Sbjct: 203 SLIATNNQISDITPLGILTNLDE-------LSLNGNQLK--------------DIGTLAS 241
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+NL+ D + NQ N + S T L EL L N +
Sbjct: 242 LTNLTDLDLAN-----NQISNLAPLSGLTK------------LTELKLGANQI--SNISP 282
Query: 245 LADLLRSSCCFALEELKLNNNGL----GITGCKLLSK-ALHDCYESSKKEGSPL-ALKVF 298
LA L L L+LN N L I+ K L+ L+ S S L L+
Sbjct: 283 LAGLTA------LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Query: 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358
N++ + + L + + N I + + L LND
Sbjct: 337 FFYNNKVSD------VSSLANLTNINWLSAGHNQISDL------TPLANLTRITQLGLND 384
Query: 359 NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
T ++ +++I N + GA ++D + + ++T N S
Sbjct: 385 QAWT-------NAPVNYKANVSIPNT---VKNVTGALIAPATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
L EL L+ N + LA L L +L L NN + + L+K
Sbjct: 223 LDELSLNGNQL--KDIGTLASLTN------LTDLDLANNQISNLAPLSGLTK-------- 266
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L G N++ N L L +E+ +N + +
Sbjct: 267 ---------LTELKLGANQISNISP------LAGLTALTNLELNENQLEDI------SPI 305
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
KNL +L L N I+ +S L L L + + L + T
Sbjct: 306 SNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFYNNKVSDV------SSLANLT 353
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
+ ++ N+IS + + N T++ Q+ +++ + V +
Sbjct: 354 NINWLSAGHNQISD------LTPLANLTRITQLGLNDQAWTNAPVNYKANV 398
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 63/253 (24%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+T +Q+ + ++ L G+ + L ++ +NN
Sbjct: 32 GKTNVTDTVSQTDLD-----QVTTLQADRL--------GIKSIDGVEYLNNLTQINFSNN 78
Query: 266 GL-GITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324
L IT K L+K L + N++ + L L
Sbjct: 79 QLTDITPLKNLTK-----------------LVDILMNNNQIADITP------LANLTNLT 115
Query: 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
+ + N I + D + NL L L+ NTI+ I ALS L SL L+
Sbjct: 116 GLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD---IS---ALSGLTSLQQLSF 163
Query: 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
G+ + L + TTLE ++++ N++S + + T L+ + + NQ
Sbjct: 164 GNQVTDLKP-------LANLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQ 210
Query: 445 F-GEEGVEEMEKL 456
+ + L
Sbjct: 211 ISDITPLGILTNL 223
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 44/236 (18%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSK----ALHDC 282
L L+LS N + L+ L L++L N + L+ +
Sbjct: 136 LNRLELSSNTIS--DISALSGLTS------LQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 283 YESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL 341
S + L L+ IA N++ + L L+ + + N + +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDI----- 236
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 401
NL L+L +N I+ + LS L L L LG + + L
Sbjct: 237 -GTLASLTNLTDLDLANNQIS---NLA---PLSGLTKLTELKLGANQISNISP------L 283
Query: 402 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF-GEEGVEEMEKL 456
T L ++ L N++ + + N L + + N V + KL
Sbjct: 284 AGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-08
Identities = 52/260 (20%), Positives = 78/260 (30%), Gaps = 73/260 (28%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L +N I A L LE L L+ N L
Sbjct: 77 NLHTLILINNKISKISPGAFAPL------VKLERLYLSKNQL-----------------K 113
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
E P L+ N + K+ +VF L + VE+ N + GI + AF
Sbjct: 114 ELPEKMPKTLQELRVHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAF 167
Query: 346 EENKNLRHLNLNDNTITYKGAIPLG--------------------QALSKLPSLAILNLG 385
+ K L ++ + D IT IP G +L L +LA L L
Sbjct: 168 QGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 386 DCLLKS--AGA-----------------SSIAKYLTDNTTLEDVNLTCNEISV--QGGLD 424
+ + G+ + L D+ ++ V L N IS
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 425 LVKAMKNKTKLKQINVSENQ 444
K +++ N
Sbjct: 285 PPGYNTKKASYSGVSLFSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L EL L N + L L L +L L+ N + + + +L +
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSIS----AVDNGSLANTP- 240
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITAL--S 342
L+ N+L + K ++ V + N I +G
Sbjct: 241 ---------HLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 343 DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ + ++L N + Y I + A + LG+
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWE-IQPS-TFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 35/172 (20%), Positives = 56/172 (32%), Gaps = 46/172 (26%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLG--- 59
+VF L + VE+ N + GI + AF+ KKL ++ + D IT IP G
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIADTNITT---IPQGLPP 192
Query: 60 -----------------QALSKLPSLAILNLGDCLLKS--AGA----------------- 83
+L L +LA L L + + G+
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISV--QGGLDLVKAMKNKTKLKQINVSENQ 133
+ L D+ ++ V L N IS K +++ N
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 48/222 (21%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
LDL +N I +L L L L NN + K+ A
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKN------LHTLILINNKIS----KISPGAFAPLV- 100
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-D 343
L+ +N+L+ ++ + K L+ L ++ IT +
Sbjct: 101 ---------KLERLYLSKNQLK----ELPEKMPKTLQELR--------VHENEITKVRKS 139
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F + + L N + G I G A + L+ + + D + ++I + L
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSG-IENG-AFQGMKKLSYIRIADTNI-----TTIPQGLPP 192
Query: 404 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+ L +++L N+I V ++K L ++ +S N
Sbjct: 193 S--LTELHLDGNKITKVDAA-----SLKGLNNLAKLGLSFNS 227
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-08
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 45/222 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L+L +N I V L LE L+L+ N + + A +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRH------LEILQLSRNHIR----TIEIGAFNGLA- 112
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
L NRL + F L L+ + + N I + S A
Sbjct: 113 ---------NLNTLELFDNRLTT----IPNGAFVYLSKLKELWLRNNPIESIP----SYA 155
Query: 345 FEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F +LR L+L + ++Y I G A L +L LNL C L+ LT
Sbjct: 156 FNRIPSLRRLDLGELKRLSY---ISEG-AFEGLSNLRYLNLAMCNLREIPN------LTP 205
Query: 404 NTTLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
L++++L+ N + +++ G + + L+++ + ++Q
Sbjct: 206 LIKLDELDLSGNHLSAIRPG-----SFQGLMHLQKLWMIQSQ 242
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 43/173 (24%)
Query: 226 RLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYE 284
L LDL + I L L L L L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGL------SNLRYLNLAMCNL----------------- 197
Query: 285 SSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
+PL L N L + F+ L L+++ M Q+ I + +
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVIE----RN 249
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG------DCLLK 390
AF+ ++L +NL N +T +P + L L ++L +C +
Sbjct: 250 AFDNLQSLVEINLAHNNLT---LLPHD-LFTPLHHLERIHLHHNPWNCNCDIL 298
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
F L L +E+ N + + + AF L+ L L +N I +IP A
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIE---SIPSY-AF 156
Query: 374 SKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 432
+++PSL L+LG+ L + + L +NL + + +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE------IPNLTPL 206
Query: 433 TKLKQINVSENQF 445
KL ++++S N
Sbjct: 207 IKLDELDLSGNHL 219
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F L L +E+ N + + + AF KL+ L L +N I +IP A
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIP----NGAFVYLSKLKELWLRNNPIE---SIPSY-AF 156
Query: 63 SKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 121
+++PSL L+LG+ L + + L +NL + + +
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA----FEGLSNLRYLNLAMCNLRE------IPNLTPL 206
Query: 122 TKLKQINVSENQF 134
KL ++++S N
Sbjct: 207 IKLDELDLSGNHL 219
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L L+ + M Q+ I + +AF+ + L +NL N +T +P +
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLT---LLPHD-LFTP 277
Query: 65 LPSLAILNLG------DCLLK 79
L L ++L +C +
Sbjct: 278 LHHLERIHLHHNPWNCNCDIL 298
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L+ +++ N + + +F+ L+ L + + I I A L
Sbjct: 203 LTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQV---IERN-AFDNL 254
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 104
SL +NL L T LE ++L N
Sbjct: 255 QSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 24/131 (18%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F+ L L ++ + + + KL L+L+ N ++ I G +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLSGNHLSA---IRPG-SFQG 229
Query: 65 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L + ++ A + +L ++NL N + +
Sbjct: 230 LMHLQKLWMIQSQIQVIERNA------FDNLQSLVEINLAHNNLTLLPHD-----LFTPL 278
Query: 122 TKLKQINVSEN 132
L++I++ N
Sbjct: 279 HHLERIHLHHN 289
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 9e-08
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 50/241 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 280
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 21 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 70
Query: 281 DCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAVFKKLKTLERVEMPQNGIYH 335
+ + PL L N++++ K LK L+ + + NGI
Sbjct: 71 FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-------LKDLKKLKSLSLEHNGISD 123
Query: 336 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395
+ + L L L +N IT LS+L L L+L D +
Sbjct: 124 I------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170
Query: 396 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 455
L T L+++ L+ N IS ++A+ L + + + + +
Sbjct: 171 -----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSN 219
Query: 456 L 456
L
Sbjct: 220 L 220
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 24/140 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K LK L+ + + NGI + + +L L L +N IT LS+L
Sbjct: 105 LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRL 152
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L+L D + L T L+++ L+ N IS ++A+ L
Sbjct: 153 TKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISD------LRALAGLKNLD 200
Query: 126 QINVSENQFGEEGVEEMEKL 145
+ + + + + L
Sbjct: 201 VLELFSQECLNKPINHQSNL 220
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 41/251 (16%), Positives = 75/251 (29%), Gaps = 53/251 (21%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+ Q+ ++ + ++ +++ + +G+ L + +L LN N
Sbjct: 29 KKKSVTDAVTQNELN-----SIDQIIANNSDIKSV--QGIQYLPN------VTKLFLNGN 75
Query: 266 GL----GITGCKLLSKALHDCYESSKKEGSPLA----LKVFIAGRNRLEN-EGAKMLAAV 316
L +T K L E+ K+ S L LK N + + G
Sbjct: 76 KLTDIKPLTNLKNLGWL--FLDENKIKDLSSLKDLKKLKSLSLEHNGISDING------- 126
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
L LE + + N I + L L+L DN I+ I L+ L
Sbjct: 127 LVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD---IV---PLAGL 174
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
L L L + + L L+ + L E + N
Sbjct: 175 TKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECL----NKPINHQSNLVVPN 224
Query: 437 QINVSENQFGE 447
+ ++
Sbjct: 225 TVKNTDGSLVT 235
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L +++ + + I V + + L LN N +T I + L+ L
Sbjct: 39 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLT---DI---KPLTNL 86
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + +K + L D L+ ++L N IS + + + +L+
Sbjct: 87 KNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEHNGISD------INGLVHLPQLE 134
Query: 126 QINVSENQ 133
+ + N+
Sbjct: 135 SLYLGNNK 142
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 5e-07
Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 48/240 (20%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL----GITGCKLLSKALH 280
A ++ +L + D + + +++++ NN+ + GI + L
Sbjct: 24 AETIKDNLKKK--------SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV-TKL- 73
Query: 281 DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHV 336
+ + PLA L N++++ + K LK L+ + + NGI +
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGISDI 127
Query: 337 GITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
+ L L L +N IT I LS+L L L+L D +
Sbjct: 128 ------NGLVHLPQLESLYLGNNKIT---DI---TVLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
L T L+++ L+ N IS ++A+ L + + + + + L
Sbjct: 174 ----LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNL 223
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
K LK L+ + + NGI + + +L L L +N IT I LS+L
Sbjct: 108 LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKIT---DI---TVLSRL 155
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L+L D + L T L+++ L+ N IS ++A+ L
Sbjct: 156 TKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISD------LRALAGLKNLD 203
Query: 126 QINVSENQFGEEGVEEMEKL 145
+ + + + + L
Sbjct: 204 VLELFSQECLNKPINHQSNL 223
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+L +++ + + I V + + L LN N +T + L+ L
Sbjct: 42 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD------IKPLANL 89
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + +K + L D L+ ++L N IS + + + +L+
Sbjct: 90 KNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHNGISD------INGLVHLPQLE 137
Query: 126 QINVSENQ 133
+ + N+
Sbjct: 138 SLYLGNNK 145
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 6e-07
Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 54/219 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
L L L+ N + LA L +L N + IT +++
Sbjct: 179 LYSLSLNYNQIE--DISPLASLT------SLHYFTAYVNQITDITPVANMTR-------- 222
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L G N++ + + L L +E+ N I + ++ A
Sbjct: 223 ---------LNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQI-----SDIN-AV 261
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
++ L+ LN+ N I+ I L+ L L L L + L + I T
Sbjct: 262 KDLTKLKMLNVGSNQIS---DIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LT 311
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
L + L+ N I+ ++ + + +K+ + +
Sbjct: 312 NLTTLFLSQNHITD------IRPLASLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L +E+ N I + ++ A ++ KL+ LN+ N I+ I L+ L
Sbjct: 239 LANLSQLTWLEIGTNQI-----SDIN-AVKDLTKLKMLNVGSNQIS---DIS---VLNNL 286
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L L + L + I T L + L+ N I+ ++ + + +K+
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGG----LTNLTTLFLSQNHITD------IRPLASLSKMD 336
Query: 126 QINVSENQ 133
+ +
Sbjct: 337 SADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 56/234 (23%)
Query: 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCY 283
A + L + D++ ++ +L + + I G + L+
Sbjct: 22 AEGIRAVLQKA--------SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN------ 67
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
L+ N++ + L L + + N I +
Sbjct: 68 -----------LEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
A + NLR L LN++ I+ I L+ L + LNLG S L++
Sbjct: 105 ALQNLTNLRELYLNEDNISD---IS---PLANLTKMYSLNLGANHN-----LSDLSPLSN 153
Query: 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKL 456
T L + +T +++ V + N T L ++++ NQ + + + L
Sbjct: 154 MTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIEDISPLASLTSL 201
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 45/237 (18%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-----GITGCKLLSK-ALH 280
L EL L+++ + LA+L + + L L N ++ L+ +
Sbjct: 112 LRELYLNEDNIS--DISPLANLTK------MYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 281 DCYESSKKEGSPL-ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+ + L L N++E+ L +L N I +
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDI--- 214
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
L L + +N IT + L+ L L L +G + A
Sbjct: 215 ---TPVANMTRLNSLKIGNNKIT---DLS---PLANLSQLTWLEIGTNQISDINA----- 260
Query: 400 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
+ D T L+ +N+ N+IS + + N ++L + ++ NQ G E +E + L
Sbjct: 261 -VKDLTKLKMLNVGSNQISD------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L ++ + N I + A + LR L LN++ I+ I L+ L
Sbjct: 84 LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISD---IS---PLANL 131
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+ LNLG S L++ T L + +T +++ V + N T L
Sbjct: 132 TKMYSLNLGANHN-----LSDLSPLSNMTGLNYLTVTESKVKD------VTPIANLTDLY 180
Query: 126 QINVSENQFGE-EGVEEMEKL 145
++++ NQ + + + L
Sbjct: 181 SLSLNYNQIEDISPLASLTSL 201
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 23/220 (10%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L + + G +L S L+EL L N + TG
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGIS---GLQELTLENLEV--TGTAPPPLL------- 116
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
E + L + A + L+ + + Q + +
Sbjct: 117 ---EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQV 169
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
L L+L+DN + + K P+L +L L + +++ +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARV 228
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
L+ ++L+ N + + ++L +N+S
Sbjct: 229 QLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGL 265
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 9e-04
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 22 IYHVGITALSDAFEEN-KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80
I S L L+L+DN + + K P+L +L L + +++
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215
Query: 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
+ L+ ++L+ N + + ++L +N+S
Sbjct: 216 PS-GVCSALAAARVQLQGLDLSHNSLR---DAAGAPSCDWPSQLNSLNLSFTGL 265
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
VF KL L + + NG+ G + + L++L+L+ N + +
Sbjct: 45 HGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVIT-----MSSNF 97
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L+ LK S+ L ++++ G
Sbjct: 98 LGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNG-----IFNGL 149
Query: 122 TKLKQINVSENQF 134
+ L+ + ++ N F
Sbjct: 150 SSLEVLKMAGNSF 162
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 39/220 (17%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
+L +L LS N G +D +S L+ L L+ NG+ +S
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTS----LKYLDLSFNGV-----ITMSSNFLGL--- 100
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L+ + L+ +VF L+ L +++ + F
Sbjct: 101 -------EQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAF----NGIF 146
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+L L + N+ + ++L +L L+L C L+ ++ +
Sbjct: 147 NGLSSLEVLKMAGNSF--QENFLPD-IFTELRNLTFLDLSQCQLEQLSPTA----FNSLS 199
Query: 406 TLEDVNLTCNEI-SVQGGLDLVKAMKNKTKLKQINVSENQ 444
+L+ +N++ N S+ K L+ ++ S N
Sbjct: 200 SLQVLNMSHNNFFSLDTF-----PYKCLNSLQVLDYSLNH 234
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 32/162 (19%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L+ LD+S L +LE LK+ N L +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQEN---FLPDIFTELRN- 176
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L + +LE + F L +L+ + M N + + + +
Sbjct: 177 ---------LTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY 219
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGD 386
+ +L+ L+ + N I L P SLA LNL
Sbjct: 220 KCLNSLQVLDYSLNHIM---TSKKQ-ELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 338 ITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396
+ +L F++ L L+L+ N +++KG Q+ SL L+L + +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGV-----IT 92
Query: 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
++ LE ++ + + + + L +++S
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTH 137
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 66/242 (27%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L L L +N I + + L + L++L ++ N L
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRK------LQKLYISKNHL-----------------V 115
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
P +L NR+ K+ VF L+ + +EM N + + G AF
Sbjct: 116 EIPPNLPSSLVELRIHDNRIR----KVPKGVFSGLRNMNCIEMGGNPLENSGFE--PGAF 169
Query: 346 ----------EENK----------NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385
E K L L+L+ N I AI L L + L L LG
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ---AIELE-DLLRYSKLYRLGLG 225
Query: 386 DCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEIS-VQGGLDLVKAMKNKTKLKQINVSEN 443
+ I TL +++L N++S V GL + L+ + + N
Sbjct: 226 HNQI-----RMIENGSLSFLPTLRELHLDNNKLSRVPAGL------PDLKLLQVVYLHTN 274
Query: 444 QF 445
Sbjct: 275 NI 276
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 39/189 (20%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGIT--------GCKLLSKA 278
LVEL + DN + + L + +++ N L + G KL
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRN------MNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG- 337
+ + + + P L N+++ + + L R+ + N I +
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 338 ------------------ITALSDAFEENKNLRHLNLNDNTITY--KGAIPLGQALSKLP 377
++ + + K L+ + L+ N IT K
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 378 SLAILNLGD 386
++L +
Sbjct: 295 YYNGISLFN 303
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+ + L L + N I + + KL L L N I I G +LS
Sbjct: 191 LPETLNELH---LDHNKIQAIE----LEDLLRYSKLYRLGLGHNQIR---MIENG-SLSF 239
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV--QGGLDLVKAMKNKT 122
LP+L L+L + L S + L D L+ V L N I+ V +
Sbjct: 240 LPTLRELHLDNNKL-----SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 123 KLKQINVSENQ 133
I++ N
Sbjct: 295 YYNGISLFNNP 305
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 29/224 (12%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS 286
+ L + N + + ++ + + + + N +G K
Sbjct: 379 VENLSFAHNKL-----KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD-------PLD 426
Query: 287 KKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN---GIYHVGITALSD 343
+ + N++ K +F L + + N I + ++
Sbjct: 427 PTPFKGINVSSINLSNNQIS----KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F+ L ++L N +T + + LP L ++L S +
Sbjct: 483 NFKNTYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGIDLSYNSF-----SKFPTQPLN 534
Query: 404 NTTLEDVNLTCNEISVQGGL--DLVKAMKNKTKLKQINVSENQF 445
++TL+ + + + + + L Q+ + N
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 57/450 (12%), Positives = 120/450 (26%), Gaps = 121/450 (26%)
Query: 26 GITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85
++ + K + N IT+ + +A+ +L L +G+ +
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF---VS--KAVMRLTKLRQFYMGNSPFVAENICE 225
Query: 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145
+ N E E L L + V + KL
Sbjct: 226 AWE----NENSEYAQQYKTEDLKWDNL---------KDLTDVEVYNCPN-------LTKL 265
Query: 146 MKSFGMAAAL-VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSH 204
+ ++ N++ N +
Sbjct: 266 PTFLKALPEMQLI-----------------------------NVACNRGISGEQLKDDWQ 296
Query: 205 NNSNQSHNTSNQ----SHMSLKTG---------ARLVELDLSDNAF-GPIGVEGLADLLR 250
++ Q + +LKT +L L+ N G + ++
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--PAFGSEIK 354
Query: 251 SSCCFALEELKLNNNGLGITG-----CKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305
L L L N + T C + ++ N+L
Sbjct: 355 ------LASLNLAYNQI--TEIPANFCGFTEQ-----------------VENLSFAHNKL 389
Query: 306 ENEGAKMLAAVF--KKLKTLERVEMPQN---GIYHVGITALSDAFEENKNLRHLNLNDNT 360
+ + +F K + + ++ N + L + N+ +NL++N
Sbjct: 390 KY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKS---AGASSIAKYLTDNTTLEDVNLTCNEI 417
I+ + S L+ +NL +L + + L ++L N++
Sbjct: 445 IS--KFPK--ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Query: 418 SVQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ L L I++S N F +
Sbjct: 501 T---KLSDDFRATTLPYLVGIDLSYNSFSK 527
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 69/433 (15%), Positives = 135/433 (31%), Gaps = 89/433 (20%)
Query: 36 ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 95
N ++ L+L + G +P A+ +L L +L LG K K ++ N +
Sbjct: 79 SNGRVTGLSLEGFGAS--GRVP--DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 96 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 155
E +++ + + E+ L+K
Sbjct: 135 DEQKQ-----------------------KMRMHYQKTFVDYDPREDFSDLIK-------D 164
Query: 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNS----------------NLSHNDSNHSHNA 199
+ D + S ++ + ++ +N + ++ +
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224
Query: 200 SNQSHNN--SNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFA 256
+ N Q + T + +LK L ++++ + + L L
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLK---DLTDVEVYNCPNLTKLPTF-LKALPE------ 274
Query: 257 LEELKL-NNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA 315
++ + + N G+ K +AL D K +++ G N L+ +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK-------IQIIYIGYNNLKTFP---VET 324
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+K+K L +E N + AF L LNL N IT IP
Sbjct: 325 SLQKMKKLGMLECLYNQL-----EGKLPAFGSEIKLASLNLAYNQIT---EIP-ANFCGF 375
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV---KAMKNK 432
+ L+ LK AK + + + ++ + NEI G +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSV---SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 433 TKLKQINVSENQF 445
+ IN+S NQ
Sbjct: 433 INVSSINLSNNQI 445
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 32/248 (12%), Positives = 74/248 (29%), Gaps = 50/248 (20%)
Query: 227 LVELDLSDNAF--GPIGVEGLADLLRSSCCFALEELKLNNNGL-------GITGCKLLSK 277
+ ++++ N G + L + ++ + + N L + K
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK---- 330
Query: 278 ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG 337
L + N+LE F L + + N I
Sbjct: 331 ----------------KLGMLECLYNQLEG-----KLPAFGSEIKLASLNLAYNQI---- 365
Query: 338 ITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA-- 394
T + ++ + + +L+ N + Y IP + ++ ++ + S
Sbjct: 366 -TEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 395 -SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453
+ + +NL+ N+IS + + L IN+ N E +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQIS---KFPK-ELFSTGSPLSSINLMGNMLTEIPKNSL 477
Query: 454 EKLMKSFG 461
+ ++F
Sbjct: 478 KDENENFK 485
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 13/137 (9%)
Query: 6 FKKLKTLEHVEMPQN---GIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
K + + ++ N + L + + +NL++N I+ +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPK--ELF 453
Query: 63 SKLPSLAILNLGDCLLKS---AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 119
S L+ +NL +L + + L ++L N+++ L
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRAT 510
Query: 120 NKTKLKQINVSENQFGE 136
L I++S N F +
Sbjct: 511 TLPYLVGIDLSYNSFSK 527
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
F + L ++++ N + L F + + L L L +N I + A
Sbjct: 83 AFVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV---VVDRN-AFE 133
Query: 64 KLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEIS 107
+ L L L + L L ++L+ N++
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F + L +++ N + L F + + L L L +N I + A
Sbjct: 83 AFVPVPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV---VVDRN-AFE 133
Query: 375 KLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEIS 418
+ L L L + L L ++L+ N++
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
+L L + + N + + S+AF NLR+L+L+ N + + S
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLH---TLDEF-LFSD 110
Query: 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEI-SVQGGLDLVKAMKNKT 433
L +L +L L + + + + ++ L+ + L+ N+I L+K
Sbjct: 111 LQALEVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LIKDGNKLP 163
Query: 434 KLKQINVSENQF 445
KL +++S N+
Sbjct: 164 KLMLLDLSSNKL 175
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
+L L + + N + + S+AF LR+L+L+ N + + S
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLH---TLDEF-LFSD 110
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEI-SVQGGLDLVKAMKNKT 122
L +L +L L + + + + ++ L+ + L+ N+I L+K
Sbjct: 111 LQALEVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LIKDGNKLP 163
Query: 123 KLKQINVSENQF 134
KL +++S N+
Sbjct: 164 KLMLLDLSSNKL 175
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 18/143 (12%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTI 361
+R+ + G A+ + L+ V + L + ++ ++ D+ I
Sbjct: 15 HDRIRDVGPDRAASEWL-LRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCI 73
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLT-CNEISV 419
G + L + + L C ++ +++ ++ ++ + C ++
Sbjct: 74 MSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129
Query: 420 QGGLDLVKAMKNKTKLKQINVSE 442
+G + A+ + LK + +S+
Sbjct: 130 KG----IIALHHFRNLKYLFLSD 148
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-06
Identities = 14/111 (12%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 23 YHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC-LLKSA 81
+ L + K++ ++ D+ I G + L + + L C ++
Sbjct: 46 WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDG 101
Query: 82 GASSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSE 131
+++ ++ ++ + C ++ +G + A+ + LK + +S+
Sbjct: 102 CLERLSQLENLQKSMLEMEIISCGNVTDKG----IIALHHFRNLKYLFLSD 148
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372
+ F L+ +++ + I + A++ +L L L N I ++ LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQ---SLALG-A 95
Query: 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKN 431
S L SL L + L +S+ + + TL+++N+ N I L + N
Sbjct: 96 FSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSN 147
Query: 432 KTKLKQINVSENQ 444
T L+ +++S N+
Sbjct: 148 LTNLEHLDLSSNK 160
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
+ F L+ +++ + I + A++ L L L N I ++ LG A
Sbjct: 45 SYSFFSFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQ---SLALG-A 95
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISVQGGLDLVKAMKN 120
S L SL L + L +S+ + + TL+++N+ N I L + N
Sbjct: 96 FSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSN 147
Query: 121 KTKLKQINVSENQ 133
T L+ +++S N+
Sbjct: 148 LTNLEHLDLSSNK 160
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
F L +L+ + + + +L + K L+ LN+ N I + L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEY 144
Query: 62 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLE-DVNLTCNEISVQGGLDLVKAMKN 120
S L +L L+L ++S + + L L ++L+ N ++ +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNF-----IQPGAFK 198
Query: 121 KTKLKQINVSENQ 133
+ +LK++ + NQ
Sbjct: 199 EIRLKELALDTNQ 211
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 59/234 (25%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
++ L+L+D I A +++L + N + L +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR----YLPPHVFQNV--- 116
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L V + RN L + + +F L + M N + + D F
Sbjct: 117 -------PLLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNNLERIE----DDTF 161
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +L++L L+ N +T + L +PSL N+ LL + L
Sbjct: 162 QATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST---------LAIPI 205
Query: 406 TLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQINVSENQ 444
+E+++ + N I+ V+G L L + N L ++++S N+
Sbjct: 206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 63/391 (16%), Positives = 115/391 (29%), Gaps = 90/391 (23%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LPPH-VF 113
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 165
Query: 123 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAE 182
L+ + +S N+ + + L + N
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFH-------ANVSY-----------------NLLSTL 201
Query: 183 GDNSNL-----SHNDSNHSHNASNQS----HNNSNQSHNTSNQSHMSLKTGARLVELDLS 233
+ SHN N N N +T+ + LVE+DLS
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP-----GLVEVDLS 256
Query: 234 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPL 293
N I + R LE L ++NN L L+
Sbjct: 257 YNELEKIMYHPFVKMQR------LERLYISNNRL-----VALNLYGQPIP---------- 295
Query: 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 353
LKV N L + + + LE + + N I + ++ L++
Sbjct: 296 TLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLKLSTHH-------TLKN 343
Query: 354 LNLNDNTITYKGAIPLGQALSKLPSLAILNL 384
L L+ N L + A+ +
Sbjct: 344 LTLSHNDWDC---NSLRALFRNVARPAVDDA 371
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 39/172 (22%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
+L + ELD S N+ +++R L LKL +N L T L
Sbjct: 200 TLAIPIAVEELDASHNSI---------NVVRGPVNVELTILKLQHNNLTDTA------WL 244
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+ L N LE K++ F K++ LER+ + N +
Sbjct: 245 LNYP----------GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRL-----V 285
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
AL+ + L+ L+L+ N + + + + + L L L + +
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 332
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LPPH-VF 113
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 165
Query: 434 KLKQINVSENQF 445
L+ + +S N+
Sbjct: 166 SLQNLQLSSNRL 177
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
F+ + +L L+L+ N+++ G + +L L LN+ L G S L
Sbjct: 95 GFKCSASLTSLDLSRNSLS--GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-- 150
Query: 404 NTTLEDVNLTCNEISVQGGL-DLVKAMKNKTKLKQINVSENQF 445
+LE ++L+ N IS G +LK + +S N+
Sbjct: 151 -NSLEVLDLSANSIS--GANVVGWVLSDGCGELKHLAISGNKI 190
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92
F+ + L L+L+ N+++ G + +L L LN+ L G S L
Sbjct: 95 GFKCSASLTSLDLSRNSLS--GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-- 150
Query: 93 NTTLEDVNLTCNEISVQGGL-DLVKAMKNKTKLKQINVSENQF 134
+LE ++L+ N IS G +LK + +S N+
Sbjct: 151 -NSLEVLDLSANSIS--GANVVGWVLSDGCGELKHLAISGNKI 190
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 50/265 (18%), Positives = 99/265 (37%), Gaps = 46/265 (17%)
Query: 185 NSNLSHNDSNHSHNASNQSHNNS-NQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPI-G 241
+ L+ S S + + + S S++ N S K A L LDLS N+ GP+
Sbjct: 59 SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118
Query: 242 VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301
+ L L+ L +++N L G L+ +L+V
Sbjct: 119 LTSLGSCSG------LKFLNVSSNTLDFPGKVSGGLKLN-------------SLEVLDLS 159
Query: 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY-HVGITALSDAFEENKNLRHLNLNDNT 360
N + + L+ + + N I V ++ NL L+++ N
Sbjct: 160 ANSISGANVVGW-VLSDGCGELKHLAISGNKISGDVDVSRCV-------NLEFLDVSSNN 211
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
+ IP L +L L++ L + ++ ++ T L+ +N++ N+
Sbjct: 212 FS--TGIP---FLGDCSALQHLDISGNKL----SGDFSRAISTCTELKLLNISSNQFV-- 260
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
G + + L+ ++++EN+F
Sbjct: 261 GPIPPL----PLKSLQYLSLAENKF 281
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L LE + + + I LS L L+++ + ++ L
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLS----GLTSLTLLDISHSAHDDSILTK----INTL 135
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
P + ++L + L L+ +N+ + + D + +++ KL
Sbjct: 136 PKVNSIDLSYNGA-----ITDIMPLKTLPELKSLNIQFDGVH-----DY-RGIEDFPKLN 184
Query: 126 QINVSENQFGEE 137
Q+ G +
Sbjct: 185 QLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 17/126 (13%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPS 67
++ +L ++ + + +T + A ++ L +N+ T +S L +
Sbjct: 42 QMNSLTYITLANINVTD--LTGIEYA----HNIKDLTINNIHATNYNP------ISGLSN 89
Query: 68 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 127
L L + + S +++ T+L ++++ + + + K+ I
Sbjct: 90 LERLRIMGKDVTSDKIPNLSG----LTSLTLLDISHSAHDDSI----LTKINTLPKVNSI 141
Query: 128 NVSENQ 133
++S N
Sbjct: 142 DLSYNG 147
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
+ ++ + + + + NL L + +T LS L
Sbjct: 62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGL 111
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436
SL +L++ + + I + ++L+ N G + + +K +LK
Sbjct: 112 TSLTLLDISHSAHDDSILTKINT----LPKVNSIDLSYN-----GAITDIMPLKTLPELK 162
Query: 437 QINVSENQFGE-EGVEEMEKL 456
+N+ + + G+E+ KL
Sbjct: 163 SLNIQFDGVHDYRGIEDFPKL 183
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 34/269 (12%), Positives = 79/269 (29%), Gaps = 37/269 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
++++++ N I V L + L HLNL N I +
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIY---DVK---GQ 187
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
L L+L L + + + ++L N++ + KA++
Sbjct: 188 VVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNNKLV-----LIEKALRFSQ 237
Query: 123 KLKQINVSENQF----GEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEEND 178
L+ ++ N F + + +++ + +E EC+ +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297
Query: 179 SDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238
+L ++ + H + + + + + AR E+D +
Sbjct: 298 --------DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349
Query: 239 PIGVEGLADLLRSSCCFALEELKLNNNGL 267
+ + A L+ L
Sbjct: 350 TVIDQVTLRKQ------AKITLEQKKKAL 372
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 42/257 (16%), Positives = 84/257 (32%), Gaps = 49/257 (19%)
Query: 206 NSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265
+ +T Q+ + + L I EG+ L L L+L +N
Sbjct: 27 GKSNVTDTVTQADLD-----GITTLSAFGTGVTTI--EGVQYLN------NLIGLELKDN 73
Query: 266 GL-GITGCKLLSKALH-DCYESSKKEGSPLA----LKVFIAGRNRLENEGAKMLAAVFKK 319
+ + K L+K + + K S +A +K ++ +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------VTPLAG 127
Query: 320 LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379
L L+ + + N I ++ NL++L++ + ++ + L+ L L
Sbjct: 128 LSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVS---DLT---PLANLSKL 175
Query: 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 439
L D + L L +V+L N+IS V + N + L +
Sbjct: 176 TTLKADDNKISDI------SPLASLPNLIEVHLKNNQISD------VSPLANTSNLFIVT 223
Query: 440 VSENQFGEEGVEEMEKL 456
++ + V L
Sbjct: 224 LTNQTITNQPVFYNNNL 240
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 24/140 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L L+ + + N I ++ L++L++ + ++ + L+ L
Sbjct: 125 LAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVS---DLT---PLANL 172
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
L L D + L L +V+L N+IS V + N + L
Sbjct: 173 SKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQISD------VSPLANTSNLF 220
Query: 126 QINVSENQFGEEGVEEMEKL 145
+ ++ + V L
Sbjct: 221 IVTLTNQTITNQPVFYNNNL 240
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
+ L L +E+ N I + + K+ L L+ N + + A++ L
Sbjct: 59 VQYLNNLIGLELKDNQITDL------APLKNLTKITELELSGNPLK---NVS---AIAGL 106
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
S+ L+L + L + L+ + L N+I+ + + T L+
Sbjct: 107 QSIKTLDLTSTQITD------VTPLAGLSNLQVLYLDLNQITN------ISPLAGLTNLQ 154
Query: 126 QINVSENQ 133
+++ Q
Sbjct: 155 YLSIGNAQ 162
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 25/143 (17%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
L++++ +++ I V L+ L L+ N IT I L+ L
Sbjct: 103 IAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQIT---NIS---PLAGL 150
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L++G+ + L + + L + N+IS + + + L
Sbjct: 151 TNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISD------ISPLASLPNLI 198
Query: 126 QINVSENQFGE-EGVEEMEKLMK 147
++++ NQ + + L
Sbjct: 199 EVHLKNNQISDVSPLANTSNLFI 221
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375
V L L +++ N + +L + L L+++ N +T ++PLG AL
Sbjct: 72 VDGTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSFNRLT---SLPLG-ALRG 122
Query: 376 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 432
L L L L LK+ G LT LE ++L N + + G +
Sbjct: 123 LGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELPAG-----LLNGL 171
Query: 433 TKLKQINVSENQ 444
L + + EN
Sbjct: 172 ENLDTLLLQENS 183
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
V L L +++ N + +L + L L+++ N +T ++PLG AL
Sbjct: 72 VDGTLPVLGTLDLSHNQL-----QSLPLLGQTLPALTVLDVSFNRLT---SLPLG-ALRG 122
Query: 65 LPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMKNK 121
L L L L LK+ G LT LE ++L N + + G +
Sbjct: 123 LGELQELYLKGNELKTLPPGL------LTPTPKLEKLSLANNNLTELPAG-----LLNGL 171
Query: 122 TKLKQINVSENQ 133
L + + EN
Sbjct: 172 ENLDTLLLQENS 183
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 59/235 (25%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
++ L+L+D I A +++L + N + L +
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHT------IQKLYMGFNAIR----YLPPHVFQNVP-- 123
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L V + RN L + + +F L + M N + + D F
Sbjct: 124 --------LLTVLVLERNDLSS----LPRGIFHNTPKLTTLSMSNNNLERIE----DDTF 167
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +L++L L+ N +T + L +PSL N+ LL + L
Sbjct: 168 QATTSLQNLQLSSNRLT---HVDLSL----IPSLFHANVSYNLLST---------LAIPI 211
Query: 406 TLEDVNLTCNEIS-VQGG-------LDL-------VKAMKNKTKLKQINVSENQF 445
+E+++ + N I+ V+G L L + N L ++++S N+
Sbjct: 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 67/387 (17%), Positives = 115/387 (29%), Gaps = 106/387 (27%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
F T++ + M N I ++ F+ L L L N ++ ++P G
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLP----PHVFQNVPLLTVLVLERNDLS---SLPRG-IF 143
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
P L L++ + L+ + T+L+++ L+ N ++ +DL
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRLTH---VDL----SLIP 192
Query: 123 KLKQINVSENQFGE-EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDA 181
L NVS N +E+L
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEEL------------------------------------ 216
Query: 182 EGDNSNLSHNDSNHSHNASNQS----HNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF 237
+ SHN N N N +T+ + LVE+DLS N
Sbjct: 217 -----DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP-----GLVEVDLSYNEL 266
Query: 238 GPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
I + R LE L ++NN L L+ LKV
Sbjct: 267 EKIMYHPFVKMQR------LERLYISNNRL-----VALNLYGQPIP----------TLKV 305
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357
N L + + + LE + + N I + ++ L++L L+
Sbjct: 306 LDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLKLSTHH-------TLKNLTLS 353
Query: 358 DNTITYKGAIPLGQALSKLPSLAILNL 384
N L + A+ +
Sbjct: 354 HNDWDC---NSLRALFRNVARPAVDDA 377
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LP-PHVF 119
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 171
Query: 434 KLKQINVSENQ 444
L+ + +S N+
Sbjct: 172 SLQNLQLSSNR 182
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
AA+ + +E + + I + + AF ++ L + N I Y +P
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRY---LP-PHVF 119
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 122
+P L +L L L S + L ++++ N + ++ + T
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLER---IE-DDTFQATT 171
Query: 123 KLKQINVSENQ 133
L+ + +S N+
Sbjct: 172 SLQNLQLSSNR 182
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 39/172 (22%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
+L + ELD S N+ +++R L LKL +N L T L
Sbjct: 206 TLAIPIAVEELDASHNSI---------NVVRGPVNVELTILKLQHNNLTDTA------WL 250
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
+ L N LE K++ F K++ LER+ + N +
Sbjct: 251 LNYP----------GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRL-----V 291
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391
AL+ + L+ L+L+ N + + + + + L L L + +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVT 338
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 39/257 (15%), Positives = 78/257 (30%), Gaps = 28/257 (10%)
Query: 191 NDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDN--AFGPIGVEGLADL 248
+ + S + T +L +LS +E +L
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKEL 374
Query: 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
L + + + L + A + + LEN
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434
Query: 309 GAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIP 368
KM A + L + H +T L E+ + HL+L+ N +
Sbjct: 435 VLKMEYADVRVLH-----------LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA----- 477
Query: 369 LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428
L AL+ L L +L D L++ + + + L+++ L N + ++
Sbjct: 478 LPPALAALRCLEVLQASDNALEN-----VDG-VANLPRLQELLLCNNRLQ---QSAAIQP 528
Query: 429 MKNKTKLKQINVSENQF 445
+ + +L +N+ N
Sbjct: 529 LVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-05
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 24 HVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83
H +T L E+ + HL+L+ N + L AL+ L L +L D L+
Sbjct: 450 HKDLTVLCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALE---- 499
Query: 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134
++ + + L+++ L N + ++ + + +L +N+ N
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 9e-05
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
++L + H+++ N + AL A + L L +DN + + ++ L
Sbjct: 459 LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALE---NVD---GVANL 507
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 107
P L L L + L+ S+ + L L +NL N +
Sbjct: 508 PRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL 376
++L + +++ N + AL A + L L +DN + + ++ L
Sbjct: 459 LEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALE---NVD---GVANL 507
Query: 377 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418
P L L L + L+ S+ + L L +NL N +
Sbjct: 508 PRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 314 AAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373
+ ++ L+ + + NGI + D+F +L HL+L+ N ++ +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLS---NLSSS-WF 120
Query: 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVKAMKN 431
L SL LNL K+ G +S+ +L T L+ + + + +Q
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRK-----DFAG 172
Query: 432 KTKLKQINVSENQF 445
T L+++ + +
Sbjct: 173 LTFLEELEIDASDL 186
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 17/133 (12%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
F L LE +E+ + + + + + + HL L+ + +
Sbjct: 169 DFAGLTFLEELEIDASDLQSYE----PKSLKSIQNVSHLILHMKQHI---LLLEI-FVDV 220
Query: 65 LPSLAILNLGDCLLKSAGASSI----AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 120
S+ L L D L + S + L T +V +T + ++K +
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-----QVMKLLNQ 275
Query: 121 KTKLKQINVSENQ 133
+ L ++ S NQ
Sbjct: 276 ISGLLELEFSRNQ 288
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 18/134 (13%)
Query: 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQAL 62
+ ++ L+ + + NGI + D+F L HL+L+ N ++ +
Sbjct: 69 NSDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLS---NLSSS-WF 120
Query: 63 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI--SVQGGLDLVKAMKN 120
L SL LNL K+ G +S+ +L T L+ + + + +Q
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRK-----DFAG 172
Query: 121 KTKLKQINVSENQF 134
T L+++ + +
Sbjct: 173 LTFLEELEIDASDL 186
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 47/190 (24%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCF--------------------ALEELKLNNN 265
L L+L N + +G L L LEEL+++ +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184
Query: 266 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 325
L K+L + I + +L ++E
Sbjct: 185 DL----QSYEPKSLKSIQ----------NVSHLILHMKQH----ILLLEIFVDVTSSVEC 226
Query: 326 VEMPQNGIYHVGITALS----DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 381
+E+ + + LS ++ + R++ + D ++ + + L+++ L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-----VMKLLNQISGLLE 281
Query: 382 LNLGDCLLKS 391
L LKS
Sbjct: 282 LEFSRNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 33/165 (20%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYES 285
L EL++ + + L + + L L+ LL + D S
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSI------QNVSHLILHMKQH-----ILLLEIFVDVTSS 223
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAV----FKKLKTLERVEMPQNGIYHVGITAL 341
++ L+ L+ K T V++ + +
Sbjct: 224 ---------VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-----FQV 269
Query: 342 SDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386
+ L L + N + ++P G +L SL + L
Sbjct: 270 MKLLNQISGLLELEFSRNQLK---SVPDG-IFDRLTSLQKIWLHT 310
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 316 VFKKLKTLERVEMPQNGIYHVGITAL-SDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374
F L +LE +++ N + + L S F+ +L LNL N + S
Sbjct: 95 SFSSLGSLEHLDLSYNYL-----SNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFS 146
Query: 375 KLPSLAILNLGDC-LLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 430
L L IL +G+ T LE++ + +++ S + ++K
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEIDASDLQSYEPK-----SLK 195
Query: 431 NKTKLKQINVSENQF 445
+ + + + Q
Sbjct: 196 SIQNVSHLILHMKQH 210
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITAL-SDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
F L +LEH+++ N + + L S F+ L LNL N + S
Sbjct: 95 SFSSLGSLEHLDLSYNYL-----SNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFS 146
Query: 64 KLPSLAILNLGDC-LLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGGLDLVKAMK 119
L L IL +G+ T LE++ + +++ S + ++K
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEIDASDLQSYEPK-----SLK 195
Query: 120 NKTKLKQINVSENQF 134
+ + + + Q
Sbjct: 196 SIQNVSHLILHMKQH 210
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 61/416 (14%), Positives = 114/416 (27%), Gaps = 106/416 (25%)
Query: 34 FEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 93
E+ L L+ ++++IT + + KL L L + + L+ N
Sbjct: 38 EEQLATLTSLDCHNSSIT---DMT---GIEKLTGLTKLICTSNNITTL-------DLSQN 84
Query: 94 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 153
T L + N+++ LD+ TKL +N N+ + V + L
Sbjct: 85 TNLTYLACDSNKLT---NLDV----TPLTKLTYLNCDTNKLTKLDVSQNPLLTY------ 131
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 213
L + L+ D +H+ + + + +
Sbjct: 132 -LNC--------------------------ARNTLTEIDVSHNTQLTELDCHLNKKITKL 164
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL---GIT 270
L T LD S N + V L L + N + +
Sbjct: 165 DVTPQTQLTT------LDCSFNKITELDVSQNK---------LLNRLNCDTNNITKLDLN 209
Query: 271 GCKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329
L+ + L F N L KL TL
Sbjct: 210 QNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVST----LSKLTTLH----- 260
Query: 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389
+ + N L + + + + L +L+ +
Sbjct: 261 ---CIQTDLLEID--LTHNTQLIYFQAEGCRKIKELDV------THNTQLYLLDCQAAGI 309
Query: 390 KSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ + L+ N L + L E++ LD+ + TKLK ++
Sbjct: 310 -----TELD--LSQNPKLVYLYLNNTELTE---LDV----SHNTKLKSLSCVNAHI 351
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 63/445 (14%), Positives = 118/445 (26%), Gaps = 114/445 (25%)
Query: 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKL 65
++L TL ++ + I + E+ L L N IT + LS+
Sbjct: 38 EEQLATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNNIT---TLD----LSQN 84
Query: 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 125
+L L L + +T T L +N N+++ LD+ L
Sbjct: 85 TNLTYLACDSNKLTN-------LDVTPLTKLTYLNCDTNKLT---KLDV----SQNPLLT 130
Query: 126 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185
+N + N E V +L
Sbjct: 131 YLNCARNTLTEIDVSHNTQL---------------------------------------- 150
Query: 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ-SHMSLKTGARLVELDLSDNAFGPIGVEG 244
+ L + + + N+ + + + L L+ N + +
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQ 210
Query: 245 LADLLRSSCCFALEELKLNNNGL---GITGCKLLSK-ALHDCYESSKKEGSPLALKVFIA 300
L L ++N L +T L+ + + L
Sbjct: 211 NI---------QLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
+ L +L + + I L N L L+
Sbjct: 262 IQTDLLEIDLTHN----TQLIYFQAEGCRK-------IKELD--VTHNTQLYLLDCQAAG 308
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420
IT + LS+ P L L L + L + + ++ NT L+ ++ I
Sbjct: 309 ITE---LD----LSQNPKLVYLYLNNTEL-----TELD--VSHNTKLKSLSCVNAHIQD- 353
Query: 421 GGLDLVKAMKNKTKLKQINVSENQF 445
++ L +E Q
Sbjct: 354 -----FSSVGKIPALNNNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 38/271 (14%), Positives = 81/271 (29%), Gaps = 60/271 (22%)
Query: 205 NNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNN 264
Q+ +T ++ ++ L LD ++ + D+ L +L +
Sbjct: 27 AFEMQATDTISEEQLA-----TLTSLDCHNS--------SITDMTGIEKLTGLTKLICTS 73
Query: 265 NGLG---ITGCKLLSK-ALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 320
N + ++ L+ A ++ L N+L +
Sbjct: 74 NNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-------LDVSQN 126
Query: 321 KTLERVEMPQNGIYHVGITAL---------------SDAFEENKNLRHLNLNDNTITYKG 365
L + +N + + ++ L L+ + N IT
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT--- 183
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL 425
+ + S+ L LN + L N L ++ + N+++ +D+
Sbjct: 184 ELDV----SQNKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSNKLT---EIDV 229
Query: 426 VKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456
T+L + S N E V + KL
Sbjct: 230 ----TPLTQLTYFDCSVNPLTELDVSTLSKL 256
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 336 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGA 394
+ ++ L + L++L+L ++ L+K +L LNL C
Sbjct: 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 395 SSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 441
++ + L+++NL+ C + + + V + Q+N+S
Sbjct: 161 QTLLSSCSR---LDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLS 203
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 40/262 (15%), Positives = 88/262 (33%), Gaps = 39/262 (14%)
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
+ + + + +Q + +Q + R+ +DLS++ + G
Sbjct: 53 DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
+ S C L+ L L L L+K S L +++ ++G +
Sbjct: 113 IL-----SQCSKLQNLSLEGLRLSDPIVNTLAK------------NSNL-VRLNLSGCSG 154
Query: 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLND--NTI 361
+ L + +L L + + + A + + LNL+ +
Sbjct: 155 FSEFALQTLLSSCSRLDELN-----LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLT-CNEISV 419
L + + P+L L+L D +LK+ + L+ ++L+ C +I
Sbjct: 210 QKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQHLSLSRCYDIIP 262
Query: 420 QGGLDLVKAMKNKTKLKQINVS 441
+ + + LK + V
Sbjct: 263 ET----LLELGEIPTLKTLQVF 280
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 25 VGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGA 83
+ ++ L + KL++L+L ++ L+K +L LNL C
Sbjct: 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 84 SSIAKYLTDNTTLEDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVS 130
++ + L+++NL+ C + + + V + Q+N+S
Sbjct: 161 QTLLSSCSR---LDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLS 203
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 348 NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
++H++L+++ I L LS+ L L+L L +++AK N+ L
Sbjct: 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNL 144
Query: 408 EDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSE-NQFGEEGVEEM 453
+NL+ C+ S L+ + L ++N+S F E+ V+
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVA 189
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 96
+++H++L+++ I L LS+ L L+L L +++AK N+ L
Sbjct: 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNL 144
Query: 97 EDVNLT-CNEISVQGGLDLVKAMKNKTKLKQINVSE-NQFGEEGVEEM 142
+NL+ C+ S L+ + L ++N+S F E+ V+
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVA 189
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 227 LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYES 285
+ ELDLS N I LA + LE L L++N L + LS
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTK------LELLNLSSNVLYETLDLESLST-------- 81
Query: 286 SKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAF 345
L+ N ++ ++E + N I V +
Sbjct: 82 ---------LRTLDLNNNYVQE---------LLVGPSIETLHAANNNISRVSCSRG---- 119
Query: 346 EENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405
+ +++ L +N IT + + L+L + + + +A
Sbjct: 120 ---QGKKNIYLANNKIT---MLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---D 169
Query: 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444
TLE +NL N I VK KLK +++S N+
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNK 202
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 14/108 (12%)
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
A+ + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QAL-ASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 400 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447
+ T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 57 F----TKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 39/203 (19%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGL-GITGCKLLSKALHDCYE 284
R+ LDL N + LA + LE L L N + + G + +K
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDT-----LEHLNLQYNFIYDVKGQVVFAK------- 192
Query: 285 SSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA 344
LK N+L + F+ + + + N + + A
Sbjct: 193 ----------LKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKL-----VLIEKA 232
Query: 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404
++NL H +L N ++ ++A + + T
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL------TGQNEEECTVP 286
Query: 405 TTLEDVNLTCNEISVQGGLDLVK 427
T C ++ L+
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIA 309
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 33/222 (14%)
Query: 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG--ITGCKLLSKALHDCY 283
+L L+LS N L L L L LNNN + + G + + +
Sbjct: 59 KLELLNLSSNVL--YETLDLESLST------LRTLDLNNNYVQELLVGPSIETLHAANNN 110
Query: 284 ESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD 343
S K N++ + ++ +++ N I V L
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITM----LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-- 164
Query: 344 AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403
+ L HLNL N I + L L+L L + +
Sbjct: 165 -AASSDTLEHLNLQYNFIY---DVK---GQVVFAKLKTLDLSSNKL-----AFMGPEFQS 212
Query: 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445
+ ++L N++ + KA++ L+ ++ N F
Sbjct: 213 AAGVTWISLRNNKLV-----LIEKALRFSQNLEHFDLRGNGF 249
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 42/199 (21%)
Query: 220 SLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
L G + L ++N + + + L NN + +
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQ---------GKKNIYLANNKITML--------- 135
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGIT 339
EG ++ N ++ A + TLE + + N IY V
Sbjct: 136 -----RDLDEGCRSRVQYLDLKLNEIDTV---NFAELAASSDTLEHLNLQYNFIYDV--- 184
Query: 340 ALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399
L+ L+L+ N + + +G + ++L + L I K
Sbjct: 185 ---KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKL-----VLIEK 231
Query: 400 YLTDNTTLEDVNLTCNEIS 418
L + LE +L N
Sbjct: 232 ALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 16/108 (14%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88
A+ + + + + + D+++ ++ L+L L A+ +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK---QAL-ASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Query: 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136
+ T LE +NL+ N + +++ + L+ ++++ N E
Sbjct: 57 F----TKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQE 94
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 56/265 (21%)
Query: 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245
+ + + S N N Q ++ L + EL+L++ +
Sbjct: 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR--QAHELELNNLGLSSL----- 86
Query: 246 ADLLRSSCCFALEELKLNNNGL-----GITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
LE L + N L K L P L+
Sbjct: 87 -----PELPPHLESLVASCNSLTELPELPQSLKSLLVD---NNNLKALSDLPPLLEYLGV 138
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
N+LE + L+ +++ N +L + +L + +N
Sbjct: 139 SNNQLEK------LPELQNSSFLKIIDVDNN--------SLKKLPDLPPSLEFIAAGNNQ 184
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN-TTLEDVNLTCNEISV 419
+ +P L LP L + + LK L D +LE + N +
Sbjct: 185 LEE---LP---ELQNLPFLTAIYADNNSLKK---------LPDLPLSLESIVAGNNILEE 229
Query: 420 QGGLDLVKAMKNKTKLKQINVSENQ 444
+ ++N L I N
Sbjct: 230 ------LPELQNLPFLTTIYADNNL 248
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKG 365
N+ + + + F +L L + + N + L F+E KNL L + DN +
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKLQ--- 98
Query: 366 AIPLGQALSKLPSLAILNLGDCLLKS--AGASSIAKYLTDNTTLEDVNLTCNEI-SVQGG 422
A+P+G +L +LA L L LKS T L ++L NE+ S+ G
Sbjct: 99 ALPIG-VFDQLVNLAELRLDRNQLKSLPPRV------FDSLTKLTYLSLGYNELQSLPKG 151
Query: 423 LDLVKAMKNKTKLKQINVSENQ 444
T LK++ + NQ
Sbjct: 152 -----VFDKLTSLKELRLYNNQ 168
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.98 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.97 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.97 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.94 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.94 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.93 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.92 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.92 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.92 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.92 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.91 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.9 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.9 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.9 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.89 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.88 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.88 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.87 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.87 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.84 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.83 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.83 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.81 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.8 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.8 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.8 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.79 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.79 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.77 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.77 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.75 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.75 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.75 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.75 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.74 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.74 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.72 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.72 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.72 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.72 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.71 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.7 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.7 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.7 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.62 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.61 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.61 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.61 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.6 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.58 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.56 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.55 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.54 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.52 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.51 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.5 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.5 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.49 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.48 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.45 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.42 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.4 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.4 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.4 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.4 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.37 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.35 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.35 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.32 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.31 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.31 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.31 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.28 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.28 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.25 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.24 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.24 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.23 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.23 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.22 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.2 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.19 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.19 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.18 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.18 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.16 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.15 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.06 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.05 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.02 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.01 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.0 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.0 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.0 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.97 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.94 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.92 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.88 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.88 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.88 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.87 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.79 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.75 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.73 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.69 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.42 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.41 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.28 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.27 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.24 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.02 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.91 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.8 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.8 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.66 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 91.31 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 90.84 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.95 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.79 |
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=330.59 Aligned_cols=412 Identities=19% Similarity=0.250 Sum_probs=343.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCC-CCcEEeccCccccch
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSA 81 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-~L~~L~ls~~~l~~~ 81 (472)
.+.+..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.+++.
T Consensus 21 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 3568889999999999999998888889999999999999999999986555544444343332 799999999999998
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhh-CCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccC
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 160 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~ 160 (472)
++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++...+..+...+..++.++.|.+...
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 888899999999999999999999998777777766543 5689999999999999888888888888888877665432
Q ss_pred CCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChh
Q psy3611 161 EGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPI 240 (472)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 240 (472)
.- .+. ....+........+.|++|++++|.++..
T Consensus 181 ~i--~~~--------------------------------------------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 181 DI--NEA--------------------------------------------GVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp BC--HHH--------------------------------------------HHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred Cc--chH--------------------------------------------HHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 10 000 11122222223457999999999999888
Q ss_pred hHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcC
Q psy3611 241 GVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL 320 (472)
Q Consensus 241 ~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~ 320 (472)
+...++..+. .+++|++|++++|.+++.+...++..+.. .+++|+.|++++|.+++.++..++..+..+
T Consensus 215 ~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 215 NCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLH---------PSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp HHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTS---------TTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHHHhc---------CCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 8777877765 45799999999999999888888776543 247899999999999999999899999999
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcC-CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 399 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 399 (472)
++|++|++++|.+++.+...++..+... ++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 9999999999999988888888877654 589999999999998888888899999999999999999999988888888
Q ss_pred Hhhc-CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHh-CCceeEEecCCC
Q psy3611 400 YLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS-FGMAAALVLEDD 471 (472)
Q Consensus 400 ~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~~ 471 (472)
.+.. +++|+.|++++|.+++.|+..++..+..+++|++|++++|++++.+...+.+.+++ ..+|+.|++.+.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 7775 68999999999999999999999999999999999999999999999999988876 346888776553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=325.41 Aligned_cols=407 Identities=25% Similarity=0.328 Sum_probs=344.1
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCC-CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
+++++..+++|++|++++|.+++.++..+...+.... +|++|++++|.+++.+...+...+..+++|++|++++|.+++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4677888999999999999999878777777665444 799999999999887766666899999999999999999998
Q ss_pred hhHHHHHHHhhc-CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHh-chhhHHhhhc
Q psy3611 81 AGASSIAKYLTD-NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS-FGMAAALVLE 158 (472)
Q Consensus 81 ~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~l~~L~~~ 158 (472)
.++..++..+.. .++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+.. .+.++.|.+.
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 888888876554 57899999999999999988999999999999999999999998888888876653 3355555443
Q ss_pred cCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCC
Q psy3611 159 DDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238 (472)
Q Consensus 159 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 238 (472)
...-. . .....+...+..+++|++|++++|.++
T Consensus 208 ~n~l~------~-----------------------------------------~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 208 SCGVT------S-----------------------------------------DNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp TSCCB------T-----------------------------------------THHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred CCCCc------H-----------------------------------------HHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 32110 0 111123344567899999999999998
Q ss_pred hhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh
Q psy3611 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK 318 (472)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 318 (472)
+.+...++..+.. .+++|++|++++|.+++.+...++..+..+ ++|+.|++++|.+.+.+...+...+.
T Consensus 241 ~~~~~~l~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~----------~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 241 DVGMAELCPGLLH-PSSRLRTLWIWECGITAKGCGDLCRVLRAK----------ESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp HHHHHHHHHHHTS-TTCCCCEEECTTSCCCHHHHHHHHHHHHHC----------TTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc-CCCCceEEECcCCCCCHHHHHHHHHHHhhC----------CCcceEECCCCCCchHHHHHHHHHhc
Confidence 8888888776643 357999999999999999999998887764 78999999999999888888887776
Q ss_pred cC-CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC-CCCCcEEEcCCCCCChHHHHH
Q psy3611 319 KL-KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 319 ~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~ 396 (472)
.. ++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+++.+.. .+.|++|++++|.+++.|+..
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 55 5999999999999999988999999999999999999999998888788887776 779999999999999999888
Q ss_pred HHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhc-CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEE
Q psy3611 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN-KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 466 (472)
++..+..+++|+.|++++|.+++.|+..+...+.. .++|+.|.+.++.+.....+.+....+..|.++.+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 99999999999999999999999999999988865 45899999999999887777777777888988765
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=254.83 Aligned_cols=311 Identities=31% Similarity=0.444 Sum_probs=221.6
Q ss_pred ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC---hhhHHHHHHHHHhchhh
Q psy3611 76 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG---EEGVEEMEKLMKSFGMA 152 (472)
Q Consensus 76 ~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~---~~~~~~l~~~l~~~~~l 152 (472)
+.++..++..++..+..+++|++|++++|.+++.+...++..+..+++|++|++++|.+. +..+..+....
T Consensus 14 ~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~------ 87 (386)
T 2ca6_A 14 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL------ 87 (386)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH------
Confidence 344555555566666666666666666666666655556666666666777766665332 22222222110
Q ss_pred HHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeC
Q psy3611 153 AALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDL 232 (472)
Q Consensus 153 ~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 232 (472)
..+..+++|++|++
T Consensus 88 ------------------------------------------------------------------~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 88 ------------------------------------------------------------------QALLKCPKLHTVRL 101 (386)
T ss_dssp ------------------------------------------------------------------HHHTTCTTCCEEEC
T ss_pred ------------------------------------------------------------------HHHhhCCcccEEEC
Confidence 01233467777777
Q ss_pred CCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHH
Q psy3611 233 SDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKM 312 (472)
Q Consensus 233 ~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 312 (472)
++|.++..++..++..+. .+++|++|++++|.+++.+...++..+..+.... .-+..++|+.|++++|.+.+.++..
T Consensus 102 s~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK-KAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH-HHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh-hcccCCCCcEEECCCCCCCcHHHHH
Confidence 777777666666665553 3457778888777777776666666654421000 0000147888888888888777777
Q ss_pred HHHHHhcCCCccEEeCCCCCCChhHHHHHHH-HHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCCh
Q psy3611 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 391 (472)
+...+..+++|++|++++|++++.|+..+.. .+..+++|++|++++|.+++.|...++..+..+++|++|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 7788888889999999999998888777777 888888999999999998877777888888888999999999999998
Q ss_pred HHHHHHHHHhhc--CCCCCEEECcCCCCCchhHHHHHHHH-hcCCcccEEEccCCCCChhH--HHHHHHHHHhCC
Q psy3611 392 AGASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAM-KNKTKLKQINVSENQFGEEG--VEEMEKLMKSFG 461 (472)
Q Consensus 392 ~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n~i~~~~--~~~l~~~l~~~~ 461 (472)
.|+..++..+.. +++|+.|+|++|.++..|+..++..+ .++++|++|++++|+++..+ ...+.+.++.++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 888888888855 88899999999999888888888888 56789999999999988777 477777777655
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=249.87 Aligned_cols=304 Identities=19% Similarity=0.237 Sum_probs=194.4
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcccc---c---hhHHHH
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK---S---AGASSI 86 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~---~---~~~~~l 86 (472)
+...++.+.++..++..++..+..+++|++|++++|.++..+...++..+..+++|++|++++|.+. + .++..+
T Consensus 7 ~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l 86 (386)
T 2ca6_A 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86 (386)
T ss_dssp TTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred cCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH
Confidence 3445666777888888888999999999999999999887777667677888999999999987543 2 356667
Q ss_pred HHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCc
Q psy3611 87 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 166 (472)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~ 166 (472)
+..+..+++|++|+|++|.+++.+...++..+..+++|++|++++|.++..++..+...+..+.....
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~------------ 154 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK------------ 154 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh------------
Confidence 77788889999999999999988888889899999999999999999987777777765443211000
Q ss_pred cccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHH
Q psy3611 167 EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA 246 (472)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 246 (472)
....+.|++|++++|.+++.+...++
T Consensus 155 ------------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 155 ------------------------------------------------------AKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp ------------------------------------------------------HHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred ------------------------------------------------------cccCCCCcEEECCCCCCCcHHHHHHH
Confidence 00114566666666666555555554
Q ss_pred HHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEE
Q psy3611 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326 (472)
Q Consensus 247 ~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L 326 (472)
..+. .+++|++|++++|.+++.+...+.. ..+..+++|+.|
T Consensus 181 ~~l~--~~~~L~~L~L~~n~l~~~g~~~l~~-------------------------------------~~l~~~~~L~~L 221 (386)
T 2ca6_A 181 KTFQ--SHRLLHTVKMVQNGIRPEGIEHLLL-------------------------------------EGLAYCQELKVL 221 (386)
T ss_dssp HHHH--HCTTCCEEECCSSCCCHHHHHHHHH-------------------------------------TTGGGCTTCCEE
T ss_pred HHHH--hCCCcCEEECcCCCCCHhHHHHHHH-------------------------------------HHhhcCCCccEE
Confidence 4443 2235555555555555444444333 044445555555
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC--CCCCcEEEcCCCCCChHHHHHHHHHh-hc
Q psy3611 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK--LPSLAILNLGDCLLKSAGASSIAKYL-TD 403 (472)
Q Consensus 327 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~l~~~~i~~~~~~~l~~~l-~~ 403 (472)
++++|.+++.|+..++..+..+++|++|++++|.+++.|...++..+.. +++|++|++++|.+++.|+..++..+ ..
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 5555555554444555555555555555555555554444444455433 55555555555555555554555544 33
Q ss_pred CCCCCEEECcCCCCCchh
Q psy3611 404 NTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~ 421 (472)
+++|+.|++++|.++..+
T Consensus 302 l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 302 MPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTSBSCTTS
T ss_pred CCCceEEEccCCcCCcch
Confidence 455555555555555544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=244.33 Aligned_cols=301 Identities=16% Similarity=0.198 Sum_probs=243.3
Q ss_pred eeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCC-cccEEECcCCccCcchHHHHHHHhhh
Q psy3611 42 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT-TLEDVNLTCNEISVQGGLDLVKAMKN 120 (472)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~ 120 (472)
+++++.|.++ +..+ ..+...++|++|++++|.+++.+...++..+..++ +|++|++++|.+++.+...+...+..
T Consensus 2 ~~~ls~n~~~--~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGS--NPVE--EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTC--CHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccch--HHHH--HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3567777764 5555 55666667999999999999888888888888888 89999999999998888888887777
Q ss_pred C-CCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccc
Q psy3611 121 K-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199 (472)
Q Consensus 121 ~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (472)
. ++|++|++++|.+++..+..++..++.+
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-------------------------------------------------- 107 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAI-------------------------------------------------- 107 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTS--------------------------------------------------
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhC--------------------------------------------------
Confidence 6 8999999999998887777777654321
Q ss_pred cccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHH
Q psy3611 200 SNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279 (472)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l 279 (472)
.++|++|++++|.+++.+...++..+... +++|++|++++|.+++.+...++..+
T Consensus 108 ------------------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 108 ------------------------PFTITVLDLGWNDFSSKSSSEFKQAFSNL-PASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp ------------------------CTTCCEEECCSSCGGGSCHHHHHHHHTTS-CTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred ------------------------CCCccEEECcCCcCCcHHHHHHHHHHHhC-CCceeEEEccCCcCCHHHHHHHHHHH
Confidence 16889999999999888888888877532 24899999999999988888888877
Q ss_pred HhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCC-CccEEeCCCCCCChhHHHHHHHHHhcC-CCccEEEcc
Q psy3611 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK-TLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLN 357 (472)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~ 357 (472)
... .++|+.|++++|.+++.+...+...+..++ +|++|++++|.+++.++..++..+... ++|++|+++
T Consensus 163 ~~~---------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 163 AAI---------PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HTS---------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred hcC---------CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 654 137999999999998888878888888884 999999999999888888888888874 589999999
Q ss_pred CCCCCcccHHHHHHHhcCCCCCcEEEcCCCC---CChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHh
Q psy3611 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCL---LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMK 430 (472)
Q Consensus 358 ~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 430 (472)
+|.+++.+...+...+..++.|+.|++++|. ++..+...++..+..+++|+.|++++|.+.+.+...+...++
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~ 309 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHH
Confidence 9999888887777777888899999999887 777777777778888888999999999888876555555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=240.58 Aligned_cols=301 Identities=18% Similarity=0.246 Sum_probs=253.0
Q ss_pred EEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCC-CCcEEeccCccccchhHHHHHHHhhc
Q psy3611 14 HVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-SLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 14 ~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
.+.++.+.++. .++..+...++|++|++++|.++..+...++.++..++ +|++|++++|.+++.++..++..+..
T Consensus 2 ~~~ls~n~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSN----PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCC----HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchH----HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 35778887776 66777777778999999999998888777778888898 89999999999999888888888887
Q ss_pred C-CcccEEECcCCccCcchHHHHHHHhhhC-CCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 93 N-TTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 93 ~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
. ++|++|++++|.+++.+...+...+..+ ++|++|++++|.++...+..+...+...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--------------------- 136 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL--------------------- 136 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS---------------------
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC---------------------
Confidence 6 8999999999999988888888888887 8999999999999888777776653321
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHh
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 250 (472)
++.|++|++++|.+++.+...++..+.
T Consensus 137 -----------------------------------------------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 137 -----------------------------------------------------PASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------------------------------------------------CCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 258999999999999888888888876
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhc-CCCccEEeCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK-LKTLERVEMP 329 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~-~~~L~~L~l~ 329 (472)
... ++|++|++++|.+++.+...++..+..+ +++|+.|++++|.+++.|...++..+.. +++|++|+++
T Consensus 164 ~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---------~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 164 AIP-ANVNSLNLRGNNLASKNCAELAKFLASI---------PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp TSC-TTCCEEECTTSCGGGSCHHHHHHHHHTS---------CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred cCC-ccccEeeecCCCCchhhHHHHHHHHHhC---------CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 443 2899999999999999988888887764 1489999999999999999889998887 4599999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCC---CCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNT---ITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~---l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
+|.+++.+...+...+..+++|+.|++++|. +++++...+.+.+..++.|+.|++++|.+.+.+...+...+.
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~ 309 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHH
Confidence 9999998888888888889999999999997 666666677778888889999999999998876555554443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.57 Aligned_cols=398 Identities=16% Similarity=0.125 Sum_probs=225.2
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCC-CCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKK-LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+.++++|++|+|++|.+++.+...+... ++. |++|++++|... ....+......+++|++|++++|.+++.+.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~---~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKA---RADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHH---HGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHh---ccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 33466666666666666665444433332 233 677777666521 122222344566777777777776665554
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
..+......+++|++|++++|.++..+...++..+..+++|++|++++|.+.. +...+..++.|+.|....+.+.
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCC
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccc
Confidence 44555555667777777777766643344556666667777777777765543 2223334555555554433221
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
.... ..........++..+++.. ......+..+..+++|++|++++|.+++....
T Consensus 257 ~~~~---------~~~~~l~~~~~L~~L~l~~----------------~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~ 311 (592)
T 3ogk_B 257 IGMP---------EKYMNLVFPRKLCRLGLSY----------------MGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311 (592)
T ss_dssp TTCT---------TSSSCCCCCTTCCEEEETT----------------CCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH
T ss_pred cchH---------HHHHHhhccccccccCccc----------------cchhHHHHHHhhcCCCcEEecCCCcCCHHHHH
Confidence 1100 0000011111111111100 11122333455667888888888887665543
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC-----------CCCCChhhHHH
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG-----------RNRLENEGAKM 312 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~-----------~~~l~~~~~~~ 312 (472)
.+. ..|++|++|+++ +.+++.+...+... +++|++|+++ .+.+++.+.
T Consensus 312 ~~~-----~~~~~L~~L~L~-~~~~~~~l~~~~~~-------------~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-- 370 (592)
T 3ogk_B 312 TLI-----QKCPNLEVLETR-NVIGDRGLEVLAQY-------------CKQLKRLRIERGADEQGMEDEEGLVSQRGL-- 370 (592)
T ss_dssp HHH-----TTCTTCCEEEEE-GGGHHHHHHHHHHH-------------CTTCCEEEEECCCCSSTTSSTTCCCCHHHH--
T ss_pred HHH-----HhCcCCCEEecc-CccCHHHHHHHHHh-------------CCCCCEEEeecCccccccccccCccCHHHH--
Confidence 322 246788888888 45555555554432 4668888888 356665543
Q ss_pred HHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEcc----CCCCCccc-HHHHHHHhcCCCCCcEEEcCCC
Q psy3611 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN----DNTITYKG-AIPLGQALSKLPSLAILNLGDC 387 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~----~n~l~~~~-~~~l~~~l~~~~~L~~L~l~~~ 387 (472)
......+++|++|+++.+.+++.++..+.. .+++|++|+++ .|.+++.- ...+...+..+++|++|+++.|
T Consensus 371 -~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 371 -IALAQGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp -HHHHHHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred -HHHHhhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 333456788888888777887665444332 36778888885 55665320 0112334555777888888654
Q ss_pred C--CChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeE
Q psy3611 388 L--LKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 465 (472)
Q Consensus 388 ~--i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~ 465 (472)
. +++.+...+. ..+++|+.|++++|.+++.+ ++..+..+++|++|++++|++++.+...+. ..+++|+.
T Consensus 447 ~~~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~ 517 (592)
T 3ogk_B 447 QGGLTDLGLSYIG---QYSPNVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERAIAAAV---TKLPSLRY 517 (592)
T ss_dssp GGGCCHHHHHHHH---HSCTTCCEEEECSCCSSHHH---HHHHHTCCTTCCEEEEESCCCBHHHHHHHH---HHCSSCCE
T ss_pred CCCccHHHHHHHH---HhCccceEeeccCCCCCHHH---HHHHHhcCcccCeeeccCCCCcHHHHHHHH---HhcCccCe
Confidence 3 6665433332 34677888888888777654 344556777888888888877665555433 35777888
Q ss_pred EecCCC
Q psy3611 466 LVLEDD 471 (472)
Q Consensus 466 L~l~~~ 471 (472)
|+++++
T Consensus 518 L~ls~n 523 (592)
T 3ogk_B 518 LWVQGY 523 (592)
T ss_dssp EEEESC
T ss_pred eECcCC
Confidence 887765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-31 Score=279.24 Aligned_cols=379 Identities=20% Similarity=0.223 Sum_probs=242.5
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhc-CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEE-NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l 86 (472)
.+++|++|++++|.+.. .+|..+.. +++|++|++++|.+. +..+ ..+..+++|++|++++|.+.+. +
T Consensus 267 ~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~l~--~~~p--~~~~~l~~L~~L~L~~n~l~~~----i 334 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHFY--GAVP--PFFGSCSLLESLALSSNNFSGE----L 334 (768)
T ss_dssp CCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSEEE--ECCC--GGGGGCTTCCEEECCSSEEEEE----C
T ss_pred ccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCcCC--Cccc--hHHhcCCCccEEECCCCcccCc----C
Confidence 46788888888887764 34555544 378888888888764 4445 5677788888888888877642 3
Q ss_pred HH-HhhcCCcccEEECcCCccCcchHHHHHHHhhhCC-CccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCC
Q psy3611 87 AK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT-KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 164 (472)
Q Consensus 87 ~~-~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~ 164 (472)
+. .+..+++|++|++++|.+++. ++..+..++ +|++|++++|.+.+..+..+... .++.++.|.+.... .
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~--~~~~L~~L~L~~n~--l 406 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQELYLQNNG--F 406 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEEC----CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS--TTCCCCEEECCSSE--E
T ss_pred CHHHHhcCCCCCEEeCcCCccCcc----ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc--ccCCccEEECCCCc--c
Confidence 32 356678888888888877642 444455555 77888887777655433322210 02233333332211 0
Q ss_pred CccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHH
Q psy3611 165 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 244 (472)
.+.++. ......+++.++++.- ......+..+..+++|++|++++|.+.......
T Consensus 407 ~~~~p~----------~l~~l~~L~~L~Ls~N---------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 407 TGKIPP----------TLSNCSELVSLHLSFN---------------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EEECCG----------GGGGCTTCCEEECCSS---------------EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccccCH----------HHhcCCCCCEEECcCC---------------cccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 011111 1111222222222110 111122233556688888888888886443333
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCcc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~ 324 (472)
+. .+++|++|++++|.++.. .+..++.+++|+.|++++|.+.+. ++.++..+++|+
T Consensus 462 ~~------~l~~L~~L~L~~N~l~~~--------------~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~ 517 (768)
T 3rgz_A 462 LM------YVKTLETLILDFNDLTGE--------------IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLA 517 (768)
T ss_dssp GG------GCTTCCEEECCSSCCCSC--------------CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCC
T ss_pred Hc------CCCCceEEEecCCcccCc--------------CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCC
Confidence 32 346888888888887632 122334467888888888888764 667777888888
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcc---cHHH---------------------------------
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK---GAIP--------------------------------- 368 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~---~~~~--------------------------------- 368 (472)
.|++++|++.. .++..+..+++|++|++++|.+... ....
T Consensus 518 ~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 518 ILKLSNNSFSG----NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp EEECCSSCCEE----ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred EEECCCCcccC----cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 88888888762 2356777888888888888865410 0000
Q ss_pred ------------------------------HHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 369 ------------------------------LGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 369 ------------------------------l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
.+..+..+++|+.|++++|.+++. ++..+..++.|+.|+|++|.++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----IPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----CCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----CCHHHhccccCCEEeCcCCccC
Confidence 001223356788999999988865 7788888899999999999888
Q ss_pred chhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 419 VQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 419 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
.. +|..+..++.|++|++++|++++... ..+..++.|+.|+++||
T Consensus 670 g~----ip~~l~~L~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 670 GS----IPDEVGDLRGLNILDLSSNKLDGRIP----QAMSALTMLTEIDLSNN 714 (768)
T ss_dssp SC----CCGGGGGCTTCCEEECCSSCCEECCC----GGGGGCCCCSEEECCSS
T ss_pred CC----CChHHhCCCCCCEEECCCCcccCcCC----hHHhCCCCCCEEECcCC
Confidence 65 78888899999999999998875433 45566889999999887
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=238.45 Aligned_cols=157 Identities=11% Similarity=0.127 Sum_probs=77.4
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC--C----CCCC----hhHHHHHHHHHhcCCCccEEEccCCCCC
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP--Q----NGIY----HVGITALSDAFEENKNLRHLNLNDNTIT 362 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~--~----~~i~----~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 362 (472)
++|+.|.++.+.+++.+... ....+++|++|+++ + +.++ +.++. ..+..+++|++|++++ .++
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALIT---IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG---AIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHH---HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH---HHHHHCTTCCEEECCS-SCC
T ss_pred hhHHHHHHhcCCcCHHHHHH---HHhhCCCcceeEeecccCCCcccccCCchhhHHH---HHHhhCCCccEEeecC-ccc
Confidence 44555555555555432221 12235556666655 2 3444 33322 2234455666666655 444
Q ss_pred cccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 363 YKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 363 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
+.+...+.. .+++|+.|++++|.+++.+...+. ..+++|+.|+|++|.+++.+. ......+++|++|++++
T Consensus 445 ~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 445 DKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLEIRDCPFGDKAL---LANASKLETMRSLWMSS 515 (594)
T ss_dssp HHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---HHCTTCCEEEEESCSCCHHHH---HHTGGGGGGSSEEEEES
T ss_pred HHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---hcCCCcCEEECcCCCCcHHHH---HHHHHhCCCCCEEeeeC
Confidence 433322221 255666666666666655433322 335666666666666654432 22334456666666666
Q ss_pred CCCChhHHHHHHHHHHhCCceeEEec
Q psy3611 443 NQFGEEGVEEMEKLMKSFGMAAALVL 468 (472)
Q Consensus 443 n~i~~~~~~~l~~~l~~~~~L~~L~l 468 (472)
|+++..+++.+. +.+|.++...+
T Consensus 516 ~~~~~~~~~~l~---~~lp~l~i~~~ 538 (594)
T 2p1m_B 516 CSVSFGACKLLG---QKMPKLNVEVI 538 (594)
T ss_dssp SCCBHHHHHHHH---HHCTTEEEEEE
T ss_pred CCCCHHHHHHHH---HhCCCCEEEEe
Confidence 666555555443 23455544443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-29 Score=250.35 Aligned_cols=363 Identities=18% Similarity=0.197 Sum_probs=231.2
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|+|++|.+.. ..+..+..+++|++|++++|.+. +.++. ..+..+++|++|++++|.+++. .+..
T Consensus 30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~--~~i~~-~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPG--LVIRN-NTFRGLSSLIILKLDYNQFLQL----ETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTT--CEECT-TTTTTCTTCCEEECTTCTTCEE----CTTT
T ss_pred CccCEEEecCCccCc----CChhHhccCccccEEECcCCccc--ceECc-ccccccccCCEEeCCCCccCcc----Chhh
Confidence 679999999998886 23677888999999999999774 22221 4678889999999999998864 3566
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHH--hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCC--CCCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKA--MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE--GECS 165 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~--~~~~ 165 (472)
++.+++|++|++++|.+++ .++.. +..+++|++|++++|.+....+..+ +..++.|+.|.+.... +...
T Consensus 99 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDG----AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF---FLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TTTCTTCCEEECTTSCCBT----HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG---GGGCTTCCEEECTTCCBSCCCT
T ss_pred ccCcccCCEEeCCCCCCCc----cccCcccccCcccCCEEECCCCccCccCcccc---cCCCCcccEEeCCCCcccccCh
Confidence 7778999999999999886 34444 7788999999999998876433321 2224455444332211 1000
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
..+.. + ....|+.|++++|.+.......+
T Consensus 172 ~~l~~--------------------------------------------------l-~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 172 EDLLN--------------------------------------------------F-QGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp TTSGG--------------------------------------------------G-TTCEEEEEECTTCBCTTCSTTCT
T ss_pred hhhhc--------------------------------------------------c-ccccccccccccCcccccchhhc
Confidence 00000 0 12688999999998855432221
Q ss_pred HHHH--hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCC-------------------------CCcceeEE
Q psy3611 246 ADLL--RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG-------------------------SPLALKVF 298 (472)
Q Consensus 246 ~~~l--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~-------------------------~~~~L~~L 298 (472)
.... ....+++|++|++++|.++......+...+.......-.+. .+++|+.|
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE
Confidence 1110 01234689999999999988776666554322100000000 12467777
Q ss_pred EcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCC
Q psy3611 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 299 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 378 (472)
++++|.+... .+..+..+++|++|++++|.+.... +..+.++++|++|++++|.++... +..+..+++
T Consensus 281 ~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~ 348 (455)
T 3v47_A 281 DLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKID----DNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDK 348 (455)
T ss_dssp ECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTT
T ss_pred EecCcccccc----chhhcccCCCCCEEECCCCcccccC----hhHhcCcccCCEEECCCCccCCcC----hhHhcCccc
Confidence 7777776653 4445666777777777777776432 345566777777777777776322 245666777
Q ss_pred CcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH--HHHHHHH
Q psy3611 379 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VEEMEKL 456 (472)
Q Consensus 379 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~--~~~l~~~ 456 (472)
|++|++++|.+++. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|+++... ...+..+
T Consensus 349 L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 349 LEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp CCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred CCEEECCCCccccc----ChhhccccccccEEECCCCccccC----CHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 77777777777653 345566677777777777777653 1234566777777777777776543 3445555
Q ss_pred HHhCC
Q psy3611 457 MKSFG 461 (472)
Q Consensus 457 l~~~~ 461 (472)
++...
T Consensus 421 l~~~~ 425 (455)
T 3v47_A 421 LNKNS 425 (455)
T ss_dssp HHHTT
T ss_pred HHhCc
Confidence 55443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=245.51 Aligned_cols=339 Identities=20% Similarity=0.192 Sum_probs=234.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
++.|.++++|++|++++|.+... ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++.
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~~- 118 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFL--QLET--GAFNGLANLEVLTLTQCNLDGA- 118 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTC--EECT--TTTTTCTTCCEEECTTSCCBTH-
T ss_pred hhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccC--ccCh--hhccCcccCCEEeCCCCCCCcc-
Confidence 45788999999999999987521 11456888999999999999985 3334 5688999999999999999873
Q ss_pred HHHHHHH--hhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 83 ASSIAKY--LTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 83 ~~~l~~~--l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
++.. +..+++|++|++++|.+... .+.. +..+++|++|++++|.+....+..+... ..+.++.+.+..
T Consensus 119 ---~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~~~L~~L~l~~ 189 (455)
T 3v47_A 119 ---VLSGNFFKPLTSLEMLVLRDNNIKKI----QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--QGKHFTLLRLSS 189 (455)
T ss_dssp ---HHHSSTTTTCTTCCEEECCSSBCCSC----CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG--TTCEEEEEECTT
T ss_pred ---ccCcccccCcccCCEEECCCCccCcc----CcccccCCCCcccEEeCCCCcccccChhhhhcc--cccccccccccc
Confidence 3343 77889999999999999863 2333 6789999999999998876544433321 012222322222
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
..-. .++. . .........+..+++|++|++++|.++.
T Consensus 190 n~l~---~~~~--------------------~--------------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 190 ITLQ---DMNE--------------------Y--------------------WLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp CBCT---TCST--------------------T--------------------CTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred Cccc---ccch--------------------h--------------------hccccccccccccceeeeEecCCCcccc
Confidence 1110 0000 0 0000000112234799999999999988
Q ss_pred hhHHHHHHHHhccCCCcceEEEeeCCCCChhHHH----------HHH----HHHHhh--------cccCcCCCCCcceeE
Q psy3611 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCK----------LLS----KALHDC--------YESSKKEGSPLALKV 297 (472)
Q Consensus 240 ~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~----------~l~----~~l~~~--------~~~~~~~~~~~~L~~ 297 (472)
.....+...+. .++|+.|++++|.+...... .+. ..+... ...+..++.+++|+.
T Consensus 227 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 227 SMAKRFFDAIA---GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp HHHHHHHHHTT---TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cchhhhhcccc---ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE
Confidence 88887777643 23566666665532211000 000 000000 112345778899999
Q ss_pred EEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCC
Q psy3611 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377 (472)
Q Consensus 298 L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 377 (472)
|++++|.+.+. .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++... +..+..++
T Consensus 304 L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~ 371 (455)
T 3v47_A 304 LTLAQNEINKI----DDNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNHIRALG----DQSFLGLP 371 (455)
T ss_dssp EECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSCCCEEC----TTTTTTCT
T ss_pred EECCCCccccc----ChhHhcCcccCCEEECCCCccCCcC----hhHhcCcccCCEEECCCCcccccC----hhhccccc
Confidence 99999999863 3556778999999999999997432 456788999999999999998532 25678899
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
+|++|++++|.+++. .+..+..+++|+.|++++|.+...
T Consensus 372 ~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 372 NLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccEEECCCCccccC----CHhHhccCCcccEEEccCCCcccC
Confidence 999999999999863 234567889999999999988765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-28 Score=245.94 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=103.2
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 332 (472)
.+++|++|++++|.+++.. +..++.+++|+.|++++|.+.+ ...++..+..+++|+.|++++|.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTV--------------FENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSCCCTTT--------------TTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCccChhh--------------hhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCc
Confidence 3456777777777765321 1233456677777777777763 22355566677777777777777
Q ss_pred CChhHHHHHHH-HHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q psy3611 333 IYHVGITALSD-AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411 (472)
Q Consensus 333 i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 411 (472)
+... ++. .+..+++|++|++++|.++... +..+ .++|+.|++++|.++. ++..+..+++|+.|+
T Consensus 386 l~~~----l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l--~~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 386 VSYD----EKKGDCSWTKSLLSLNMSSNILTDTI----FRCL--PPRIKVLDLHSNKIKS-----IPKQVVKLEALQELN 450 (520)
T ss_dssp CBCC----GGGCSCCCCTTCCEEECCSSCCCGGG----GGSC--CTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEE
T ss_pred CCcc----cccchhccCccCCEEECcCCCCCcch----hhhh--cccCCEEECCCCcccc-----cchhhhcCCCCCEEE
Confidence 6531 121 2445667777777777765311 1111 1567777777777764 555555677777777
Q ss_pred CcCCCCCchhHHHHHHH-HhcCCcccEEEccCCCCChhHH-HHH-HHHHHhCC
Q psy3611 412 LTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGV-EEM-EKLMKSFG 461 (472)
Q Consensus 412 L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~i~~~~~-~~l-~~~l~~~~ 461 (472)
+++|.++. ++.. +..+++|++|++++|++..... ..+ ..+++..+
T Consensus 451 L~~N~l~~-----l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~ 498 (520)
T 2z7x_B 451 VASNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498 (520)
T ss_dssp CCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCCc-----cCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence 77777765 3443 6667777777777777654322 333 55555443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=220.22 Aligned_cols=304 Identities=20% Similarity=0.246 Sum_probs=217.6
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+... + . +..+++|++|++++|.+++.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-----~~-~~~~~~~L~~L~l~~n~i~~~---~--~-~~~l~~L~~L~L~~n~i~~~---- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-----IQ-GIEYLTNLEYLNLNGNQITDI---S--P-LSNLVKLTNLYIGTNKITDI---- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC---G--G-GTTCTTCCEEECCSSCCCCC----
T ss_pred chhcccccEEEEeCCcccc-----ch-hhhhcCCccEEEccCCccccc---h--h-hhcCCcCCEEEccCCcccCc----
Confidence 4567888999998888775 22 367788899999998887532 2 2 67888899999999888763
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCC
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 165 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~ 165 (472)
..+..+++|++|++++|.+.+. +. +..+++|++|++++|......+.
T Consensus 104 --~~~~~l~~L~~L~l~~n~i~~~-----~~-~~~l~~L~~L~l~~n~~~~~~~~------------------------- 150 (347)
T 4fmz_A 104 --SALQNLTNLRELYLNEDNISDI-----SP-LANLTKMYSLNLGANHNLSDLSP------------------------- 150 (347)
T ss_dssp --GGGTTCTTCSEEECTTSCCCCC-----GG-GTTCTTCCEEECTTCTTCCCCGG-------------------------
T ss_pred --hHHcCCCcCCEEECcCCcccCc-----hh-hccCCceeEEECCCCCCcccccc-------------------------
Confidence 2467788899999998888863 22 67788899999888743221100
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
+..++.|++|++++|.+..... +
T Consensus 151 -------------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 151 -------------------------------------------------------LSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp -------------------------------------------------------GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred -------------------------------------------------------hhhCCCCcEEEecCCCcCCchh--h
Confidence 2335788888888888754432 1
Q ss_pred HHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccE
Q psy3611 246 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 325 (472)
Q Consensus 246 ~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~ 325 (472)
..+++|++|++++|.+++... +..+++|+.+++++|.+.+.. . +..+++|++
T Consensus 174 ------~~l~~L~~L~l~~n~l~~~~~----------------~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~ 225 (347)
T 4fmz_A 174 ------ANLTDLYSLSLNYNQIEDISP----------------LASLTSLHYFTAYVNQITDIT-----P-VANMTRLNS 225 (347)
T ss_dssp ------GGCTTCSEEECTTSCCCCCGG----------------GGGCTTCCEEECCSSCCCCCG-----G-GGGCTTCCE
T ss_pred ------ccCCCCCEEEccCCccccccc----------------ccCCCccceeecccCCCCCCc-----h-hhcCCcCCE
Confidence 245678888888888764321 123567888888888877531 1 567788888
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCC
Q psy3611 326 VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNT 405 (472)
Q Consensus 326 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~ 405 (472)
|++++|+++... . +..+++|++|++++|.++.. ..+..+++|+.|++++|.+++. ..+..++
T Consensus 226 L~l~~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~ 287 (347)
T 4fmz_A 226 LKIGNNKITDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLS 287 (347)
T ss_dssp EECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCT
T ss_pred EEccCCccCCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCC
Confidence 888888887443 1 66788888888888887742 3566778888888888888762 3466778
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|+.|++++|.+... .+..+..+++|++|++++|++++... +..+++|+.|+++++
T Consensus 288 ~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQ 343 (347)
T ss_dssp TCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC
T ss_pred CCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhh
Confidence 888888888888765 45667778888888888888765432 556888888888876
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-29 Score=258.93 Aligned_cols=352 Identities=14% Similarity=0.180 Sum_probs=225.9
Q ss_pred hHHHhhhcCCccEEeccCCCcchh-------------hHHHHHHhhh--cCCCCCeeeCCCCccCccchHHHHHHhccCC
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHV-------------GITALSDAFE--ENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~-------------~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~ 66 (472)
+|+.|.++++|++|+|++|.++.. ....+|..+. ++++|++|++++|.+. +.+| ..+..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~~~p--~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--TKLP--TFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--SSCC--TTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--ccCh--HHHhcCC
Confidence 456789999999999999998862 0112788888 9999999999999875 6667 7789999
Q ss_pred CCcEEeccCcc-ccchhHHHHHHHhhcC------CcccEEECcCCccCcchHHHHHH--HhhhCCCccEEEecCCcCChh
Q psy3611 67 SLAILNLGDCL-LKSAGASSIAKYLTDN------TTLEDVNLTCNEISVQGGLDLVK--AMKNKTKLKQINVSENQFGEE 137 (472)
Q Consensus 67 ~L~~L~ls~~~-l~~~~~~~l~~~l~~~------~~L~~L~l~~~~i~~~~~~~l~~--~l~~~~~L~~L~l~~~~i~~~ 137 (472)
+|++|++++|. +++. .++..++.+ ++|++|++++|.++. ++. .+..+++|++|++++|.+.+.
T Consensus 274 ~L~~L~Ls~n~~l~~~---~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 274 EMQLINVACNRGISGE---QLKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp SCCEEECTTCTTSCHH---HHHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred CCCEEECcCCCCCccc---cchHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCccc
Confidence 99999999998 8762 255555554 899999999999983 565 788899999999999988754
Q ss_pred hHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhh
Q psy3611 138 GVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQS 217 (472)
Q Consensus 138 ~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (472)
.+ .+..++.|+.|.+....-. .+|.
T Consensus 346 ip-----~~~~l~~L~~L~L~~N~l~---~lp~----------------------------------------------- 370 (636)
T 4eco_A 346 LP-----AFGSEIKLASLNLAYNQIT---EIPA----------------------------------------------- 370 (636)
T ss_dssp CC-----CCEEEEEESEEECCSSEEE---ECCT-----------------------------------------------
T ss_pred hh-----hhCCCCCCCEEECCCCccc---cccH-----------------------------------------------
Confidence 44 1233555555444322100 1111
Q ss_pred hhhhhcCCc-ccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCC------
Q psy3611 218 HMSLKTGAR-LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG------ 290 (472)
Q Consensus 218 ~~~~~~~~~-L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~------ 290 (472)
.+..+++ |++|++++|.++... .. +....+++|++|++++|.++... +..++
T Consensus 371 --~l~~l~~~L~~L~Ls~N~l~~lp-~~----~~~~~l~~L~~L~Ls~N~l~~~~--------------p~~l~~~~~~~ 429 (636)
T 4eco_A 371 --NFCGFTEQVENLSFAHNKLKYIP-NI----FDAKSVSVMSAIDFSYNEIGSVD--------------GKNFDPLDPTP 429 (636)
T ss_dssp --TSEEECTTCCEEECCSSCCSSCC-SC----CCTTCSSCEEEEECCSSCTTTTT--------------TCSSCTTCSSC
T ss_pred --hhhhhcccCcEEEccCCcCcccc-hh----hhhcccCccCEEECcCCcCCCcc--------------hhhhccccccc
Confidence 1233455 777777777775221 11 11122336777777777765321 11122
Q ss_pred -CCcceeEEEcCCCCCChhhHHHHHH-HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcC-------CCccEEEccCCCC
Q psy3611 291 -SPLALKVFIAGRNRLENEGAKMLAA-VFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-------KNLRHLNLNDNTI 361 (472)
Q Consensus 291 -~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-------~~L~~L~l~~n~l 361 (472)
.+++|+.|++++|.+.. ++. .+..+++|+.|++++|+++... ...+... ++|++|++++|.+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 430 FKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIP----KNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCC----SSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcC----HHHhccccccccccCCccEEECcCCcC
Confidence 44577777777777763 333 3345677777777777766221 1111111 2677777777777
Q ss_pred CcccHHHHHHHhc--CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc------CCCCCchhHHHHHHHHhcCC
Q psy3611 362 TYKGAIPLGQALS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT------CNEISVQGGLDLVKAMKNKT 433 (472)
Q Consensus 362 ~~~~~~~l~~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~------~n~i~~~~~~~l~~~l~~~~ 433 (472)
+. ++..+. .+++|+.|++++|.+++ ++..+..+++|+.|+++ +|.+... ++..+..++
T Consensus 501 ~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~----~p~~l~~l~ 566 (636)
T 4eco_A 501 TK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE----WPEGITLCP 566 (636)
T ss_dssp CB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCCC----CCTTGGGCS
T ss_pred Cc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccCccccc----ChHHHhcCC
Confidence 62 234444 66777777777777764 55566667777777773 3444443 566667777
Q ss_pred cccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 434 KLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 434 ~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|++|++++|+++.. .. .+ .++|+.|+++++
T Consensus 567 ~L~~L~Ls~N~l~~i-p~----~~--~~~L~~L~Ls~N 597 (636)
T 4eco_A 567 SLTQLQIGSNDIRKV-NE----KI--TPNISVLDIKDN 597 (636)
T ss_dssp SCCEEECCSSCCCBC-CS----CC--CTTCCEEECCSC
T ss_pred CCCEEECCCCcCCcc-CH----hH--hCcCCEEECcCC
Confidence 777777777776321 11 11 156777777765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=228.19 Aligned_cols=396 Identities=15% Similarity=0.164 Sum_probs=270.1
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCc-cCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNT-ITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
+..+..+++|++|+|++|.+++.++..+.. .+++|++|++.+|. ++ ...+......+++|++|++++|.+++.
T Consensus 98 ~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAK---SFKNFKVLVLSSCEGFS---TDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHH---HCTTCCEEEEESCEEEE---HHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HHHHHhCCCCCeEEeeCcEEcHHHHHHHHH---hCCCCcEEeCCCcCCCC---HHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 456678999999999999988766444432 47899999999994 43 222325566899999999999998876
Q ss_pred hHHHHHHHhhcCCcccEEECcCCc--cCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNE--ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~--i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
+...++.....+++|++|++++|. +++. .+......+++|++|++++|.. .. .+...+..++.|+.|....
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~-~~---~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFS---ALERLVTRCPNLKSLKLNRAVP-LE---KLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHH---HHHHHHHHCTTCCEEECCTTSC-HH---HHHHHHHHCTTCSEEECSB
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHH---HHHHHHHhCCCCcEEecCCCCc-HH---HHHHHHhcCCcceEccccc
Confidence 655565555577899999999986 4443 4555556689999999998832 11 2555556677777776554
Q ss_pred CCCCCCc-cccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCC
Q psy3611 160 DEGECSD-EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFG 238 (472)
Q Consensus 160 ~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 238 (472)
+...... .+...+. ......++..++ .........+...+..+++|++|++++|.++
T Consensus 245 ~~~~~~~~~~~~l~~-------~l~~~~~L~~Ls---------------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSV-------ALSGCKELRCLS---------------GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp CCCCCCHHHHHHHHH-------HHHTCTTCCEEE---------------CCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred ccCccchhhHHHHHH-------HHhcCCCccccc---------------CCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 4321111 0110000 001111111110 0000111223333446789999999999987
Q ss_pred hhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc---------CCCCCChhh
Q psy3611 239 PIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA---------GRNRLENEG 309 (472)
Q Consensus 239 ~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l---------~~~~l~~~~ 309 (472)
+.+...+. ..|++|++|++++| +++.+...++.. +++|+.|++ ..+.+++.+
T Consensus 303 ~~~l~~~~-----~~~~~L~~L~l~~~-~~~~~l~~l~~~-------------~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 303 SYDLVKLL-----CQCPKLQRLWVLDY-IEDAGLEVLAST-------------CKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHHHHH-----TTCTTCCEEEEEGG-GHHHHHHHHHHH-------------CTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHHHHHHH-----hcCCCcCEEeCcCc-cCHHHHHHHHHh-------------CCCCCEEEEecCcccccccCCCCCHHH
Confidence 66544433 35689999999998 776666665543 468999999 345677665
Q ss_pred HHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEcc--C----CCCC----cccHHHHHHHhcCCCCC
Q psy3611 310 AKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN--D----NTIT----YKGAIPLGQALSKLPSL 379 (472)
Q Consensus 310 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~--~----n~l~----~~~~~~l~~~l~~~~~L 379 (472)
...+ ...+++|++|.+..+.+++.++..+. ..+++|+.|+++ + +.++ +.| +...+..+++|
T Consensus 364 l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~L 434 (594)
T 2p1m_B 364 LVSV---SMGCPKLESVLYFCRQMTNAALITIA---RNRPNMTRFRLCIIEPKAPDYLTLEPLDIG---FGAIVEHCKDL 434 (594)
T ss_dssp HHHH---HHHCTTCCEEEEEESCCCHHHHHHHH---HHCTTCCEEEEEESSTTCCCTTTCCCTHHH---HHHHHHHCTTC
T ss_pred HHHH---HHhchhHHHHHHhcCCcCHHHHHHHH---hhCCCcceeEeecccCCCcccccCCchhhH---HHHHHhhCCCc
Confidence 4433 34689999999999999987654443 357899999999 4 5666 333 33446678999
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHh
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKS 459 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~ 459 (472)
+.|++++ .+++.+...+.. .+++|+.|++++|.+++.+...+. ..+++|++|++++|++++.+...+. ..
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~L~~n~~~~~~~~~~~---~~ 504 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLEIRDCPFGDKALLANA---SK 504 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---HHCTTCCEEEEESCSCCHHHHHHTG---GG
T ss_pred cEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---hcCCCcCEEECcCCCCcHHHHHHHH---Hh
Confidence 9999987 888876544433 478999999999999887644332 5689999999999999777665443 45
Q ss_pred CCceeEEecCCC
Q psy3611 460 FGMAAALVLEDD 471 (472)
Q Consensus 460 ~~~L~~L~l~~~ 471 (472)
+++|+.|+++++
T Consensus 505 l~~L~~L~l~~~ 516 (594)
T 2p1m_B 505 LETMRSLWMSSC 516 (594)
T ss_dssp GGGSSEEEEESS
T ss_pred CCCCCEEeeeCC
Confidence 789999999876
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=233.78 Aligned_cols=369 Identities=17% Similarity=0.163 Sum_probs=246.6
Q ss_pred cCC-ccEEeccCCC-cchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHH
Q psy3611 9 LKT-LEHVEMPQNG-IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86 (472)
Q Consensus 9 ~~~-L~~L~L~~~~-l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l 86 (472)
+++ |++|+|++|. +...+ ++.....+++|++|++++|.+.+.+...+......+++|++|++++|.+++.....+
T Consensus 136 ~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 136 RADDLETLKLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HGGGCCEEEEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred ccccCcEEECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 455 8888888875 33333 455556778888888888887655543333566778888888888888874444567
Q ss_pred HHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC----------------------hhhHHHHHH
Q psy3611 87 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG----------------------EEGVEEMEK 144 (472)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~----------------------~~~~~~l~~ 144 (472)
+..+.++++|++|++++|.+.+ ++..+..+++|+.|+++..... ......+..
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 287 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG
T ss_pred HHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH
Confidence 7777778888888888887764 4566677777777777632111 000011111
Q ss_pred HHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC
Q psy3611 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG 224 (472)
Q Consensus 145 ~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (472)
.+..+++|+.|.+.... .........+..+
T Consensus 288 ~~~~~~~L~~L~Ls~~~--------------------------------------------------l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL--------------------------------------------------LETEDHCTLIQKC 317 (592)
T ss_dssp GGGGGGGCCEEEETTCC--------------------------------------------------CCHHHHHHHHTTC
T ss_pred HHhhcCCCcEEecCCCc--------------------------------------------------CCHHHHHHHHHhC
Confidence 22234444444333221 0111122345678
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEee-----------CCCCChhHHHHHHHHHHhhcccCcCCCCCc
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLN-----------NNGLGITGCKLLSKALHDCYESSKKEGSPL 293 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~-----------~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~ 293 (472)
++|++|+++ +.+++.+...++. .|++|++|+++ .+.+++.+...+... |+
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~-----~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-------------~~ 378 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQ-----YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-------------CQ 378 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHH-----HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-------------CT
T ss_pred cCCCEEecc-CccCHHHHHHHHH-----hCCCCCEEEeecCccccccccccCccCHHHHHHHHhh-------------Cc
Confidence 999999998 5566666555554 35789999999 467888877766543 57
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC----CCCCChhHH-HHHHHHHhcCCCccEEEccCCC--CCcccH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP----QNGIYHVGI-TALSDAFEENKNLRHLNLNDNT--ITYKGA 366 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~----~~~i~~~~~-~~l~~~l~~~~~L~~L~l~~n~--l~~~~~ 366 (472)
+|+.|+++.+.+++.+...+. ..+++|++|+++ .+.+++... ..+...+.++++|++|+++.|. +++.+.
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred cCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 899999998999886544332 358899999996 567765200 0233445678999999998654 665443
Q ss_pred HHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 367 IPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 367 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
. .....+++|++|++++|.+++.+ ++..+..+++|+.|+|++|.+++.+ ++..+..+++|++|++++|+++
T Consensus 456 ~---~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 456 S---YIGQYSPNVRWMLLGYVGESDEG---LMEFSRGCPNLQKLEMRGCCFSERA---IAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp H---HHHHSCTTCCEEEECSCCSSHHH---HHHHHTCCTTCCEEEEESCCCBHHH---HHHHHHHCSSCCEEEEESCBCC
T ss_pred H---HHHHhCccceEeeccCCCCCHHH---HHHHHhcCcccCeeeccCCCCcHHH---HHHHHHhcCccCeeECcCCcCC
Confidence 3 33345889999999999998765 4455577899999999999987664 3444567899999999999999
Q ss_pred hhHHHHHHHHHHhCCceeEEecC
Q psy3611 447 EEGVEEMEKLMKSFGMAAALVLE 469 (472)
Q Consensus 447 ~~~~~~l~~~l~~~~~L~~L~l~ 469 (472)
+.+.+.+.+ .+|.+....+.
T Consensus 527 ~~~~~~l~~---~~p~l~~~~~~ 546 (592)
T 3ogk_B 527 MTGQDLMQM---ARPYWNIELIP 546 (592)
T ss_dssp TTCTTGGGG---CCTTEEEEEEC
T ss_pred HHHHHHHHH---hCCCcEEEEec
Confidence 888776654 36666555443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-29 Score=268.09 Aligned_cols=373 Identities=19% Similarity=0.166 Sum_probs=253.8
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+.++++|++|++++|.+... ..+..+++|++|++++|.+. +..+ . +..+++|++|++++|.+++.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~------~~~~~l~~L~~L~Ls~n~l~--~~~~--~-l~~l~~L~~L~Ls~n~l~~~---- 238 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGD------VDVSRCVNLEFLDVSSNNFS--TGIP--F-LGDCSALQHLDISGNKLSGD---- 238 (768)
T ss_dssp TTCCTTCCEEECCSSEEESC------CBCTTCTTCCEEECCSSCCC--SCCC--B-CTTCCSCCEEECCSSCCCSC----
T ss_pred hccCCCCCEEECCCCccccc------CCcccCCcCCEEECcCCcCC--CCCc--c-cccCCCCCEEECcCCcCCCc----
Confidence 78899999999999988752 12367899999999999885 3444 3 78899999999999999873
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCC
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 165 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~ 165 (472)
++..++.+++|++|++++|.+.+. ++.. .+++|++|++++|.+.+..+..+... ++.|+.|.+....- .
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~---~~~L~~L~Ls~n~l--~ 307 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGP----IPPL--PLKSLQYLSLAENKFTGEIPDFLSGA---CDTLTGLDLSGNHF--Y 307 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEES----CCCC--CCTTCCEEECCSSEEEESCCCCSCTT---CTTCSEEECCSSEE--E
T ss_pred ccHHHhcCCCCCEEECCCCcccCc----cCcc--ccCCCCEEECcCCccCCccCHHHHhh---cCcCCEEECcCCcC--C
Confidence 677888899999999999988752 2222 67899999999998775544433321 24555544432210 0
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
+.++. .......++.+++..-. .........+..+++|++|++++|.+.......+
T Consensus 308 ~~~p~----------~~~~l~~L~~L~L~~n~--------------l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 308 GAVPP----------FFGSCSLLESLALSSNN--------------FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp ECCCG----------GGGGCTTCCEEECCSSE--------------EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred Cccch----------HHhcCCCccEEECCCCc--------------ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 01111 01111222222221100 0001111224455677777777776643333333
Q ss_pred HHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCC--CcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 246 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS--PLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 246 ~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
.... ++|++|++++|.+++.. +..++. +++|+.|++++|.+.+. ++..+..+++|
T Consensus 364 ~~l~-----~~L~~L~Ls~N~l~~~~--------------~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L 420 (768)
T 3rgz_A 364 TNLS-----ASLLTLDLSSNNFSGPI--------------LPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSEL 420 (768)
T ss_dssp HHHT-----TTCSEEECCSSEEEEEC--------------CTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTC
T ss_pred Hhhh-----cCCcEEEccCCCcCCCc--------------ChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCC
Confidence 3320 25677777766654221 122222 56789999999988753 66677888999
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.|++++|.++. .++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+. ++..+..
T Consensus 421 ~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~ 488 (768)
T 3rgz_A 421 VSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSN 488 (768)
T ss_dssp CEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGG
T ss_pred CEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhc
Confidence 999999998763 2356677889999999999988732 336677888999999999998864 6777888
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++|+.|++++|.+... ++..+..+++|++|++++|++++... ..+..+++|+.|+++++
T Consensus 489 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGNIP----AELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEECC----GGGGGCTTCCEEECCSS
T ss_pred CCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCcCC----HHHcCCCCCCEEECCCC
Confidence 89999999999988864 67788889999999999998864433 34566899999999876
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-28 Score=247.91 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++.. .+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+..
T Consensus 26 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI----GHGDLRACANLQVLILKSSRIN--TIEG--DAFYSLGSLEHLDLSDNHLSSL----SSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEE----CSSTTSSCTTCCEEECTTSCCC--EECT--TTTTTCTTCCEEECTTSCCCSC----CHHH
T ss_pred CCccEEECcCCccCcc----ChhhhhcCCcccEEECCCCCcC--ccCh--hhccccccCCEEECCCCccCcc----CHHH
Confidence 4677777777776652 2445666777777777777664 2333 4566677777777777777653 2334
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 133 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 133 (472)
++.+++|++|++++|.+...+ ++..+..+++|++|++++|.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLG---VTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSC---SSCSCTTCTTCCEEEEEESS
T ss_pred hccCCCCcEEECCCCcccccc---hhhhhhccCCccEEECCCCc
Confidence 556677777777777666321 23345566677777777665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-28 Score=253.32 Aligned_cols=125 Identities=26% Similarity=0.276 Sum_probs=91.2
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
+..|.++++|++|++++|.+.. ..+..|..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++..
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLI--FMAE--TALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCS--EECT--TTTSSCTTCCEEECTTSCCSCGG
T ss_pred hhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCccc--ccCh--hhhcccccccEeeccccCcccCC
Confidence 4568889999999999998876 33677888899999999998875 3334 56788889999999998887632
Q ss_pred HHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHH
Q psy3611 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 143 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 143 (472)
+..++.+++|++|++++|.+.... ++. +..+++|++|++++|.+....+..+.
T Consensus 122 ----~~~~~~l~~L~~L~L~~n~l~~~~---~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 122 ----FIPLHNQKTLESLYLGSNHISSIK---LPK-GFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp ----GSCCTTCTTCCEEECCSSCCCCCC---CCT-TCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred ----cchhccCCcccEEECCCCcccccC---ccc-ccCCcccCEEEcccCcccccChhhhh
Confidence 234567788888888888887521 122 22377888888888877765444443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-28 Score=254.33 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=125.0
Q ss_pred hcCCcccEEeCCCCCCChhh--HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEE
Q psy3611 222 KTGARLVELDLSDNAFGPIG--VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI 299 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l~~~~--~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~ 299 (472)
..+++|++|++++|.++... ...+. .+++|++|++++|.++.. +..+..+++|+.|+
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~------~~~~L~~L~L~~n~l~~~---------------~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDL------GTNSLRHLDLSFNGAIIM---------------SANFMGLEELQHLD 405 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHH------CCSCCCEEECCSCSEEEE---------------CCCCTTCTTCCEEE
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhc------cCCcccEeECCCCccccc---------------hhhccCCCCCCeeE
Confidence 35567777777777764332 22221 345777777777765421 12344566777777
Q ss_pred cCCCCCChhhHHHHH-HHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCC
Q psy3611 300 AGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 300 l~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 378 (472)
+++|.+... .+ ..+..+++|+.|++++|.+... .+..+.++++|++|++++|.+.... ++..+..+++
T Consensus 406 l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~ 474 (606)
T 3vq2_A 406 FQHSTLKRV----TEFSAFLSLEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTN 474 (606)
T ss_dssp CTTSEEEST----TTTTTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTT
T ss_pred CCCCccCCc----cChhhhhccccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCC
Confidence 777766542 22 3455667777777777776532 2345566777777777777665311 1244556677
Q ss_pred CcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHH
Q psy3611 379 LAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 458 (472)
Q Consensus 379 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~ 458 (472)
|+.|++++|.+++. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|+++. +...+.
T Consensus 475 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~-----~p~~~~ 541 (606)
T 3vq2_A 475 LTFLDLSKCQLEQI----SWGVFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIET-----SKGILQ 541 (606)
T ss_dssp CCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCCCC-----EESCGG
T ss_pred CCEEECCCCcCCcc----ChhhhcccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcCcc-----cCHhHh
Confidence 77777777777653 345566667777777777777663 35566667777777777777652 122244
Q ss_pred hCC-ceeEEecCCC
Q psy3611 459 SFG-MAAALVLEDD 471 (472)
Q Consensus 459 ~~~-~L~~L~l~~~ 471 (472)
..+ .|+.|++++|
T Consensus 542 ~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 542 HFPKSLAFFNLTNN 555 (606)
T ss_dssp GSCTTCCEEECCSC
T ss_pred hhcccCcEEEccCC
Confidence 555 3777777665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-28 Score=253.79 Aligned_cols=396 Identities=18% Similarity=0.172 Sum_probs=232.6
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|++++|.++. ..+..+..+++|++|++++|.+. +..+ ..|..+++|++|++++|.+.+. .+..
T Consensus 33 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIY--WIHE--DTFQSQHRLDTLVLTANPLIFM----AETA 100 (606)
T ss_dssp TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCC--EECT--TTTTTCTTCCEEECTTCCCSEE----CTTT
T ss_pred CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccc--eeCh--hhccCccccCeeeCCCCccccc----Chhh
Confidence 368999999998886 23667888999999999999875 3444 5688899999999999988863 3556
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC--CCcc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE--CSDE 167 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~--~~~~ 167 (472)
++.+++|++|++++|.++..+ +..+..+++|++|++++|.+.......+.. +++|+.|.+....-. ....
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSID----FIPLHNQKTLESLYLGSNHISSIKLPKGFP----TEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGG----GSCCTTCTTCCEEECCSSCCCCCCCCTTCC----CTTCCEEECCSSCCCEECHHH
T ss_pred hcccccccEeeccccCcccCC----cchhccCCcccEEECCCCcccccCcccccC----CcccCEEEcccCcccccChhh
Confidence 778899999999999988621 344678889999999999886532221211 445555444322111 0001
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccc--------------------------------------------
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS-------------------------------------------- 203 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 203 (472)
+...+..... ..++....+....+..+..
T Consensus 173 ~~~l~~L~~l-------~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 173 MSSLQQATNL-------SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHTTTTCCSE-------EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhccccee-------EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 1110000000 0000011100000000000
Q ss_pred -----------cCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHH
Q psy3611 204 -----------HNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC 272 (472)
Q Consensus 204 -----------~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~ 272 (472)
..-..............+..+++|++|++++|.++... ..+ ..+++|++|++++|.++....
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l------~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGL------VGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-SSC------CSCTTCCEEECTTCCCSBGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC-hhh------cccccCCEEECccCCcCcCch
Confidence 00000000111122223445566777777766664221 111 234567777777776653321
Q ss_pred HHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHH-HHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCc
Q psy3611 273 KLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351 (472)
Q Consensus 273 ~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 351 (472)
. .++.+++|+.|++++|.+... ++ ..+..+++|++|++++|.+.... ..+..+..+++|
T Consensus 319 ~--------------~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L 378 (606)
T 3t6q_A 319 I--------------SASNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDIETSD--CCNLQLRNLSHL 378 (606)
T ss_dssp G--------------CGGGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCCCEEE--ESTTTTTTCTTC
T ss_pred h--------------hhhccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCcccccc--CcchhcccCCCC
Confidence 1 123356677777777765532 21 23556777777777777776321 113345667788
Q ss_pred cEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhc
Q psy3611 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKN 431 (472)
Q Consensus 352 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 431 (472)
++|++++|.+.... +..+..+++|+.|++++|.+.... .+..+..+++|+.|++++|.+... .+..+..
T Consensus 379 ~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 447 (606)
T 3t6q_A 379 QSLNLSYNEPLSLK----TEAFKECPQLELLDLAFTRLKVKD---AQSPFQNLHLLKVLNLSHSLLDIS----SEQLFDG 447 (606)
T ss_dssp CEEECCSCSCEEEC----TTTTTTCTTCSEEECTTCCEECCT---TCCTTTTCTTCCEEECTTCCCBTT----CTTTTTT
T ss_pred CEEECCCCcCCcCC----HHHhcCCccCCeEECCCCcCCCcc---cchhhhCcccCCEEECCCCccCCc----CHHHHhC
Confidence 88888888776321 245667788888888888776431 122356678888888888887664 3556777
Q ss_pred CCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 432 KTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 432 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+++|++|++++|++++.... ....+..+++|+.|+++++
T Consensus 448 l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCC
Confidence 88899999988887642211 1134566888999998876
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-28 Score=257.80 Aligned_cols=353 Identities=15% Similarity=0.192 Sum_probs=209.3
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhH-------------HHHHHhhh--cCCCCCeeeCCCCccCccchHHHHHHhccCC
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGI-------------TALSDAFE--ENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~-------------~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~ 66 (472)
+|..|.++++|++|+|++|.++..++ ..+|..+. .+++|++|++++|.+. +.+| ..+..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--~~iP--~~l~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--TQLP--DFLYDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--CSCC--GGGGGCS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--ccCh--HHHhCCC
Confidence 56778999999999999999886210 13677766 8999999999999875 6667 7789999
Q ss_pred CCcEEeccCcc-ccchhHHHHHHHhh-------cCCcccEEECcCCccCcchHHHHHH--HhhhCCCccEEEecCCcCCh
Q psy3611 67 SLAILNLGDCL-LKSAGASSIAKYLT-------DNTTLEDVNLTCNEISVQGGLDLVK--AMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 67 ~L~~L~ls~~~-l~~~~~~~l~~~l~-------~~~~L~~L~l~~~~i~~~~~~~l~~--~l~~~~~L~~L~l~~~~i~~ 136 (472)
+|++|++++|. +++. .+|..++ .+++|++|++++|.++. ++. .+..+++|+.|++++|.+.
T Consensus 516 ~L~~L~Ls~N~~lsg~---~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 516 ELQSLNIACNRGISAA---QLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp SCCEEECTTCTTSCHH---HHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCEEECcCCCCcccc---cchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCcc-
Confidence 99999999998 8761 1344344 34599999999999984 565 7888999999999999887
Q ss_pred hhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchh
Q psy3611 137 EGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQ 216 (472)
Q Consensus 137 ~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (472)
..+ .+..++.|+.|.+....-. .+|.
T Consensus 587 ~lp-----~~~~L~~L~~L~Ls~N~l~---~lp~---------------------------------------------- 612 (876)
T 4ecn_A 587 HLE-----AFGTNVKLTDLKLDYNQIE---EIPE---------------------------------------------- 612 (876)
T ss_dssp BCC-----CCCTTSEESEEECCSSCCS---CCCT----------------------------------------------
T ss_pred cch-----hhcCCCcceEEECcCCccc---cchH----------------------------------------------
Confidence 333 2233555555544332111 1211
Q ss_pred hhhhhhcCCc-ccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCC--CCCc
Q psy3611 217 SHMSLKTGAR-LVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKE--GSPL 293 (472)
Q Consensus 217 ~~~~~~~~~~-L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~--~~~~ 293 (472)
.+..+++ |++|++++|.++... . .+.....++|+.|++++|.++.... ..+..+ ..++
T Consensus 613 ---~l~~l~~~L~~L~Ls~N~L~~lp-~----~~~~~~~~~L~~L~Ls~N~l~g~ip-----------~l~~~l~~~~~~ 673 (876)
T 4ecn_A 613 ---DFCAFTDQVEGLGFSHNKLKYIP-N----IFNAKSVYVMGSVDFSYNKIGSEGR-----------NISCSMDDYKGI 673 (876)
T ss_dssp ---TSCEECTTCCEEECCSSCCCSCC-S----CCCTTCSSCEEEEECCSSCTTTTSS-----------SCSSCTTTCCCC
T ss_pred ---HHhhccccCCEEECcCCCCCcCc-h----hhhccccCCCCEEECcCCcCCCccc-----------cchhhhccccCC
Confidence 1223345 666666666664221 1 1111122336666666666642110 000000 1233
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHH-hcCCCccEEeCCCCCCChhHHHHHHHHHh--------cCCCccEEEccCCCCCcc
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFE--------ENKNLRHLNLNDNTITYK 364 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~--------~~~~L~~L~l~~n~l~~~ 364 (472)
+|+.|++++|.+.. ++..+ ..+++|+.|++++|++.. ++..+. ++++|+.|++++|.++.
T Consensus 674 ~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~- 742 (876)
T 4ecn_A 674 NASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS- 742 (876)
T ss_dssp CEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-
T ss_pred CcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-
Confidence 56666666666663 33332 356666666666666652 122111 12266666666666652
Q ss_pred cHHHHHHHhc--CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC------CCCCchhHHHHHHHHhcCCccc
Q psy3611 365 GAIPLGQALS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC------NEISVQGGLDLVKAMKNKTKLK 436 (472)
Q Consensus 365 ~~~~l~~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~ 436 (472)
++..+. .+++|+.|++++|.+.+ ++..+..+++|+.|+|++ |.+... ++..+..+++|+
T Consensus 743 ----lp~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~ 809 (876)
T 4ecn_A 743 ----LSDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLI 809 (876)
T ss_dssp ----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCC
T ss_pred ----chHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCC
Confidence 223443 56666666666666664 455555666666666654 444332 455666666666
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|++++|+++.. ... + .++|+.|++++|
T Consensus 810 ~L~Ls~N~L~~I-p~~----l--~~~L~~LdLs~N 837 (876)
T 4ecn_A 810 QLQIGSNDIRKV-DEK----L--TPQLYILDIADN 837 (876)
T ss_dssp EEECCSSCCCBC-CSC----C--CSSSCEEECCSC
T ss_pred EEECCCCCCCcc-CHh----h--cCCCCEEECCCC
Confidence 666666666321 111 1 145666666665
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-28 Score=256.25 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=150.4
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCc-ceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCC--CcceeE
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGS--PLALKV 297 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~-L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~--~~~L~~ 297 (472)
+..+++|++|++++|.++... ..+ ..+++ |++|++++|.++. .+..++. +++|+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp-~~l------~~l~~~L~~L~Ls~N~l~~---------------lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIP-ANF------CGFTEQVENLSFAHNKLKY---------------IPNIFDAKSVSVMSA 406 (636)
T ss_dssp CEEEEEESEEECCSSEEEECC-TTS------EEECTTCCEEECCSSCCSS---------------CCSCCCTTCSSCEEE
T ss_pred hCCCCCCCEEECCCCcccccc-Hhh------hhhcccCcEEEccCCcCcc---------------cchhhhhcccCccCE
Confidence 445689999999999886221 122 23467 9999999999862 1222233 348999
Q ss_pred EEcCCCCCChhhHHHHHHHHh-------cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 298 FIAGRNRLENEGAKMLAAVFK-------KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 298 L~l~~~~l~~~~~~~l~~~~~-------~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
|++++|.+.+. .+..+. .+.+|+.|++++|+++... ...+..+++|++|++++|.++....
T Consensus 407 L~Ls~N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~~l~~L~~L~Ls~N~l~~i~~---- 474 (636)
T 4eco_A 407 IDFSYNEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFP----KELFSTGSPLSSINLMGNMLTEIPK---- 474 (636)
T ss_dssp EECCSSCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC----THHHHTTCCCSEEECCSSCCSBCCS----
T ss_pred EECcCCcCCCc----chhhhcccccccccCCCCCEEECcCCccCcCC----HHHHccCCCCCEEECCCCCCCCcCH----
Confidence 99999999864 444455 6679999999999998322 3345568999999999999873211
Q ss_pred HHhcC-------CCCCcEEEcCCCCCChHHHHHHHHHhh--cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEcc
Q psy3611 371 QALSK-------LPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 441 (472)
Q Consensus 371 ~~l~~-------~~~L~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 441 (472)
..+.. +++|+.|++++|.++. ++..+. .+++|+.|++++|.++. ++..+..+++|++|+++
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECC
T ss_pred HHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECC
Confidence 12222 2389999999999985 777776 88999999999999986 67888899999999995
Q ss_pred C------CCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 442 E------NQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 442 ~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
+ |++... +...+..+++|+.|+++++.
T Consensus 545 ~N~~ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 545 NQRDAQGNRTLRE----WPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp SCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSC
T ss_pred CCcccccCccccc----ChHHHhcCCCCCEEECCCCc
Confidence 4 554433 33456679999999999873
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=241.40 Aligned_cols=401 Identities=17% Similarity=0.151 Sum_probs=248.6
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.+.. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++. ++..
T Consensus 21 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQ--YLDI--SVFKFNQELEYLDLSHNKLVK-----ISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCC--EEEG--GGGTTCTTCCEEECCSSCCCE-----EECC
T ss_pred ccccEEECCCCcccc----cChhhccccccccEEecCCCccC--CcCh--HHhhcccCCCEEecCCCceee-----cCcc
Confidence 689999999998886 33567888999999999999885 3444 678889999999999999885 3333
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhh--HHhhhccCC----CC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA--AALVLEDDE----GE 163 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l--~~L~~~~~~----~~ 163 (472)
.+++|++|++++|.++.. .++..+..+++|++|++++|.+.... +..++.+ +.|.+.... +.
T Consensus 88 --~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSC---CCCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCccccc---cchhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeeccccccccc
Confidence 688999999999998752 24567788999999999999887632 2234444 444443321 11
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCccc----------ccccccCCC--CcccccchhhhhhhhcCCcccEEe
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN----------ASNQSHNNS--NQSHNTSNQSHMSLKTGARLVELD 231 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~ 231 (472)
.+..+......... ..+....+..... .......+. ........... .+..+++|++|+
T Consensus 156 ~~~~l~~l~~~~l~--------l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~ 226 (520)
T 2z7x_B 156 DPEGLQDFNTESLH--------IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT 226 (520)
T ss_dssp CTTTTTTCCEEEEE--------EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE
T ss_pred ccccccccccceEE--------EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc
Confidence 11111110000000 0000000000000 000000000 00000111112 455677888888
Q ss_pred CCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH----HHHHhhcc---------cC------------
Q psy3611 232 LSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS----KALHDCYE---------SS------------ 286 (472)
Q Consensus 232 l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~----~~l~~~~~---------~~------------ 286 (472)
++++.++......+..... +++|++|++++|.+++.....+. ..+..... .+
T Consensus 227 l~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHH---TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCC
T ss_pred ccccccCHHHHHHHHHHhh---hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCc
Confidence 8887776655555544432 34788888888876421100000 00000000 00
Q ss_pred ------------c-C-CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCcc
Q psy3611 287 ------------K-K-EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR 352 (472)
Q Consensus 287 ------------~-~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~ 352 (472)
. . ...+++|+.|++++|.+.+. .+..+..+++|+.|++++|+++. +..++..+..+++|+
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQ 377 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCC
Confidence 0 0 14667788888888888763 45566778888888888888873 335667788888888
Q ss_pred EEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC
Q psy3611 353 HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK 432 (472)
Q Consensus 353 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 432 (472)
+|++++|.+... ... ..+..+++|++|++++|.+++. ++..+. ++|+.|++++|.++. ++..+..+
T Consensus 378 ~L~Ls~N~l~~~-l~~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~-----ip~~~~~l 443 (520)
T 2z7x_B 378 QLDISQNSVSYD-EKK--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS-----IPKQVVKL 443 (520)
T ss_dssp EEECCSSCCBCC-GGG--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC-----CCGGGGGC
T ss_pred EEECCCCcCCcc-ccc--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc-----cchhhhcC
Confidence 888888887731 111 2355678888888888888754 333322 789999999998885 67777788
Q ss_pred CcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 433 TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 433 ~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++|++|++++|+++..... .+..+++|+.|+++++
T Consensus 444 ~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 444 EALQELNVASNQLKSVPDG----IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCCccCHH----HhccCCcccEEECcCC
Confidence 9999999999988742211 4667899999999886
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=215.09 Aligned_cols=286 Identities=22% Similarity=0.247 Sum_probs=229.0
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
.+..+++|++|++++|.++.. +. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~-----~~-~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~~n~i~~~~-- 126 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDI-----SP-LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISDIS-- 126 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECTTSCCCCCG--
T ss_pred hhhhcCCccEEEccCCccccc-----hh-hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECcCCcccCch--
Confidence 478899999999999998862 22 88899999999999988642 35789999999999999998642
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 164 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~ 164 (472)
. +..+++|++|++++|..... +..+..+++|++|++++|.+....+
T Consensus 127 ---~-~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~------------------------- 172 (347)
T 4fmz_A 127 ---P-LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP------------------------- 172 (347)
T ss_dssp ---G-GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG-------------------------
T ss_pred ---h-hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh-------------------------
Confidence 2 67789999999999955432 2337889999999999998764211
Q ss_pred CccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHH
Q psy3611 165 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 244 (472)
+..+++|++|++++|.+.....
T Consensus 173 --------------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~-- 194 (347)
T 4fmz_A 173 --------------------------------------------------------IANLTDLYSLSLNYNQIEDISP-- 194 (347)
T ss_dssp --------------------------------------------------------GGGCTTCSEEECTTSCCCCCGG--
T ss_pred --------------------------------------------------------hccCCCCCEEEccCCccccccc--
Confidence 2235899999999999865432
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCcc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~ 324 (472)
+ ..+++|+.|++++|.+++... ++.+++|+.|++++|.+... +. +..+++|+
T Consensus 195 ~------~~l~~L~~L~l~~n~l~~~~~----------------~~~~~~L~~L~l~~n~l~~~-----~~-~~~l~~L~ 246 (347)
T 4fmz_A 195 L------ASLTSLHYFTAYVNQITDITP----------------VANMTRLNSLKIGNNKITDL-----SP-LANLSQLT 246 (347)
T ss_dssp G------GGCTTCCEEECCSSCCCCCGG----------------GGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCC
T ss_pred c------cCCCccceeecccCCCCCCch----------------hhcCCcCCEEEccCCccCCC-----cc-hhcCCCCC
Confidence 1 345799999999999875432 23367899999999999863 22 67899999
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcC
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 404 (472)
+|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. .+..+..+
T Consensus 247 ~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l 310 (347)
T 4fmz_A 247 WLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNE----DMEVIGGL 310 (347)
T ss_dssp EEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGG----GHHHHHTC
T ss_pred EEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCc----ChhHhhcc
Confidence 999999999853 3577899999999999999852 3577899999999999999876 45667788
Q ss_pred CCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++|+.|++++|.++.. +. +..+++|++|++++|+|+
T Consensus 311 ~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDI-----RP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCC-----GG-GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccc-----cC-hhhhhccceeehhhhccc
Confidence 9999999999999874 33 888999999999999875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-27 Score=231.38 Aligned_cols=316 Identities=18% Similarity=0.246 Sum_probs=217.8
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.++++++|+++++.++.-. +..+..+++|++|++++|.+.. ..+ ..+..+++|++|++++|.+++. .+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~----~~~~~~l~~L~~L~L~~n~i~~--~~~--~~~~~l~~L~~L~L~~n~l~~~----~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEE--IDT--YAFAYAHTIQKLYMGFNAIRYL----PP 110 (390)
T ss_dssp GGCCCSEEEEESCEESEEC----THHHHHCCCCSEEECTTSCCCE--ECT--TTTTTCTTCCEEECCSSCCCCC----CT
T ss_pred ccCCceEEEecCCchhhCC----hhHhcccccCcEEECCCCcccc--cCh--hhccCCCCcCEEECCCCCCCcC----CH
Confidence 3578888888888777522 3346778889999998888753 222 4577888899999998888763 34
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 166 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~ 166 (472)
..++.+++|++|++++|.++. ++.. +..+++|++|++++|.+....+..+ ..+++|+.|.+....-.
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~--- 178 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNRLT--- 178 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCTTTT----SSCTTCCEEECCSSCCS---
T ss_pred HHhcCCCCCCEEECCCCccCc-----CCHHHhcCCCCCcEEECCCCccCccChhhc----cCCCCCCEEECCCCcCC---
Confidence 456678889999999888874 3333 4678889999998887764322211 12333333322211000
Q ss_pred cccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHH
Q psy3611 167 EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA 246 (472)
Q Consensus 167 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 246 (472)
. ..+..++.|++|++++|.++...
T Consensus 179 ~---------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~----- 202 (390)
T 3o6n_A 179 H---------------------------------------------------VDLSLIPSLFHANVSYNLLSTLA----- 202 (390)
T ss_dssp B---------------------------------------------------CCGGGCTTCSEEECCSSCCSEEE-----
T ss_pred c---------------------------------------------------cccccccccceeecccccccccC-----
Confidence 0 00233477888888888775432
Q ss_pred HHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEE
Q psy3611 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326 (472)
Q Consensus 247 ~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L 326 (472)
..++|++|++++|.++.... ..+++|+.|++++|.+.+. ..+..+++|++|
T Consensus 203 ------~~~~L~~L~l~~n~l~~~~~-----------------~~~~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 253 (390)
T 3o6n_A 203 ------IPIAVEELDASHNSINVVRG-----------------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEV 253 (390)
T ss_dssp ------CCSSCSEEECCSSCCCEEEC-----------------CCCSSCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred ------CCCcceEEECCCCeeeeccc-----------------cccccccEEECCCCCCccc------HHHcCCCCccEE
Confidence 12478888888888764311 1236789999999988863 356788899999
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCC
Q psy3611 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406 (472)
Q Consensus 327 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~ 406 (472)
++++|.+.... +..+..+++|++|++++|.++.. +.....+++|+.|++++|.+.. ++..+..+++
T Consensus 254 ~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~ 319 (390)
T 3o6n_A 254 DLSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDR 319 (390)
T ss_dssp ECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTT
T ss_pred ECCCCcCCCcC----hhHccccccCCEEECCCCcCccc-----CcccCCCCCCCEEECCCCccee-----cCccccccCc
Confidence 99999887432 45677888999999999988742 1334567889999999998875 4555566788
Q ss_pred CCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 407 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
|+.|++++|.+... + +..+++|++|++++|++.......+
T Consensus 320 L~~L~L~~N~i~~~-----~--~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 320 LENLYLDHNSIVTL-----K--LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp CSEEECCSSCCCCC-----C--CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred CCEEECCCCcccee-----C--chhhccCCEEEcCCCCccchhHHHH
Confidence 99999999988773 2 6677899999999998877654433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-27 Score=250.58 Aligned_cols=335 Identities=16% Similarity=0.186 Sum_probs=217.5
Q ss_pred HHhccCCCCcEEeccCccccchh-------------HHHHHHHhh--cCCcccEEECcCCccCcchHHHHHHHhhhCCCc
Q psy3611 60 QALSKLPSLAILNLGDCLLKSAG-------------ASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124 (472)
Q Consensus 60 ~~l~~~~~L~~L~ls~~~l~~~~-------------~~~l~~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 124 (472)
..+..+++|++|+|++|.+++.. ...+|..++ ++++|++|+|++|.+.. .+|..+..+++|
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L 517 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPEL 517 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSC
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCC
Confidence 55777888888888888887610 012566665 78888888888887765 366777788888
Q ss_pred cEEEecCCc-CCh-hhHHHHHHHH---HhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccc
Q psy3611 125 KQINVSENQ-FGE-EGVEEMEKLM---KSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNA 199 (472)
Q Consensus 125 ~~L~l~~~~-i~~-~~~~~l~~~l---~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (472)
+.|++++|. +++ ..|..+...- ..++.|+.|.+....-. .+|.. .....+.+++.++++.
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~--------~~l~~L~~L~~L~Ls~---- 582 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPAS--------ASLQKMVKLGLLDCVH---- 582 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCH--------HHHTTCTTCCEEECTT----
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCCh--------hhhhcCCCCCEEECCC----
Confidence 888888887 776 6666665532 23345555544432211 22210 0011122222222211
Q ss_pred cccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCc-ceEEEeeCCCCChhHHHHHHHH
Q psy3611 200 SNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~-L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
+.+. .++ .+..+++|++|++++|.++.. ...+ ..+++ |++|++++|.++..
T Consensus 583 ------N~l~------~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l------~~l~~~L~~L~Ls~N~L~~l-------- 634 (876)
T 4ecn_A 583 ------NKVR------HLE-AFGTNVKLTDLKLDYNQIEEI-PEDF------CAFTDQVEGLGFSHNKLKYI-------- 634 (876)
T ss_dssp ------SCCC------BCC-CCCTTSEESEEECCSSCCSCC-CTTS------CEECTTCCEEECCSSCCCSC--------
T ss_pred ------CCcc------cch-hhcCCCcceEEECcCCccccc-hHHH------hhccccCCEEECcCCCCCcC--------
Confidence 1110 111 345668999999999998622 2222 23457 99999999998621
Q ss_pred HHhhcccCcCCCCC--cceeEEEcCCCCCChhhHHHHHHHHh--cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEE
Q psy3611 279 LHDCYESSKKEGSP--LALKVFIAGRNRLENEGAKMLAAVFK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354 (472)
Q Consensus 279 l~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 354 (472)
+..++.+ ++|+.|++++|.+.+.. ..++..+. .+.+|+.|++++|.++... ...+..+++|+.|
T Consensus 635 -------p~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp----~~~~~~l~~L~~L 702 (876)
T 4ecn_A 635 -------PNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQKFP----TELFATGSPISTI 702 (876)
T ss_dssp -------CSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCSCC----HHHHHTTCCCSEE
T ss_pred -------chhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCccC----HHHHccCCCCCEE
Confidence 1122223 34999999999987520 00111122 3458999999999998322 2344578999999
Q ss_pred EccCCCCCcccHHHHHHHhc--------CCCCCcEEEcCCCCCChHHHHHHHHHhh--cCCCCCEEECcCCCCCchhHHH
Q psy3611 355 NLNDNTITYKGAIPLGQALS--------KLPSLAILNLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLD 424 (472)
Q Consensus 355 ~l~~n~l~~~~~~~l~~~l~--------~~~~L~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~ 424 (472)
++++|.+.. ++..+. .+++|+.|++++|.++. ++..+. .+++|+.|+|++|.+..
T Consensus 703 ~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~----- 767 (876)
T 4ecn_A 703 ILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS----- 767 (876)
T ss_dssp ECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS-----
T ss_pred ECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc-----
Confidence 999999873 112221 22389999999999984 677776 88999999999999986
Q ss_pred HHHHHhcCCcccEEEccC------CCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 425 LVKAMKNKTKLKQINVSE------NQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 425 l~~~l~~~~~L~~L~l~~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
++..+..+++|+.|++++ |.+... +...+..+++|+.|+++++.
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSC
T ss_pred cchhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCCEEECCCCC
Confidence 677888999999999977 544432 34456679999999999873
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=224.43 Aligned_cols=342 Identities=20% Similarity=0.249 Sum_probs=240.7
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.++++++|++.++.+.. ++ .+..+++|++|++++|.+... + . +..+++|++|++++|.+.+..
T Consensus 44 ~l~~l~~L~l~~~~i~~-----l~-~~~~l~~L~~L~Ls~n~l~~~---~--~-~~~l~~L~~L~l~~n~l~~~~----- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-----ID-GVEYLNNLTQINFSNNQLTDI---T--P-LKNLTKLVDILMNNNQIADIT----- 106 (466)
T ss_dssp HHHTCCEEECCSSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC---G--G-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhccccEEecCCCCCcc-----Cc-chhhhcCCCEEECCCCccCCc---h--h-hhccccCCEEECCCCccccCh-----
Confidence 46788999999888774 23 367789999999999987532 2 2 688899999999999888642
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
. +..+++|++|++++|.+.+. + .+..+++|++|++++|.+.... .+..++.|+.|....... .
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~~~----~ 169 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDI-----D-PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQVT----D 169 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC-----G-GGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEESCC----C
T ss_pred h-hcCCCCCCEEECCCCCCCCC-----h-HHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCccc----C
Confidence 2 67789999999999988863 2 2678899999999998876532 134466665555432110 0
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
++ ......+++.+++..-. .. .. ..+..+++|++|++++|.+..... +
T Consensus 170 ~~-----------~~~~l~~L~~L~l~~n~----------l~-----~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-- 217 (466)
T 1o6v_A 170 LK-----------PLANLTTLERLDISSNK----------VS-----DI--SVLAKLTNLESLIATNNQISDITP--L-- 217 (466)
T ss_dssp CG-----------GGTTCTTCCEEECCSSC----------CC-----CC--GGGGGCTTCSEEECCSSCCCCCGG--G--
T ss_pred ch-----------hhccCCCCCEEECcCCc----------CC-----CC--hhhccCCCCCEEEecCCccccccc--c--
Confidence 00 11222333333332110 00 00 124567889999999988855432 1
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
..+++|++|++++|.+++.+ .+..+++|+.|++++|.+... +. +..+++|+.|+
T Consensus 218 ----~~l~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~ 271 (466)
T 1o6v_A 218 ----GILTNLDELSLNGNQLKDIG----------------TLASLTNLTDLDLANNQISNL-----AP-LSGLTKLTELK 271 (466)
T ss_dssp ----GGCTTCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCSSCCCCC-----GG-GTTCTTCSEEE
T ss_pred ----cccCCCCEEECCCCCcccch----------------hhhcCCCCCEEECCCCccccc-----hh-hhcCCCCCEEE
Confidence 23568999999999887531 123367899999999988763 22 66788999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCC
Q psy3611 328 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407 (472)
Q Consensus 328 l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 407 (472)
+++|.+.... . +..+++|++|++++|.+... ..+..+++|+.|++++|.+.+.. + +..+++|
T Consensus 272 l~~n~l~~~~-----~-~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~----~--~~~l~~L 333 (466)
T 1o6v_A 272 LGANQISNIS-----P-LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDIS----P--VSSLTKL 333 (466)
T ss_dssp CCSSCCCCCG-----G-GTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCCSCCG----G--GGGCTTC
T ss_pred CCCCccCccc-----c-ccCCCccCeEEcCCCcccCc------hhhcCCCCCCEEECcCCcCCCch----h--hccCccC
Confidence 9999887432 1 67788999999999988742 22667889999999999888642 1 5678999
Q ss_pred CEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 408 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 408 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+.|++++|.+... ..+..+++|++|++++|++++... +..+++|+.|+++++
T Consensus 334 ~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 334 QRLFFYNNKVSDV------SSLANLTNINWLSAGHNQISDLTP------LANLTRITQLGLNDQ 385 (466)
T ss_dssp CEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCBCGG------GTTCTTCCEEECCCE
T ss_pred CEeECCCCccCCc------hhhccCCCCCEEeCCCCccCccch------hhcCCCCCEEeccCC
Confidence 9999999988873 467788999999999999876542 566889999988764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=234.45 Aligned_cols=370 Identities=17% Similarity=0.191 Sum_probs=179.7
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
.|.++++|++|++++|.++. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++..
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~~-- 114 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLS--SLSS--SWFGPLSSLKYLNLMGNPYQTLG-- 114 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCC--SCCH--HHHTTCTTCCEEECTTCCCSSSC--
T ss_pred hhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccC--ccCH--HHhccCCCCcEEECCCCcccccc--
Confidence 45566666666666666654 22345566666666666666654 2222 34566666666666666665321
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHH-HHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLV-KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
++..++.+++|++|++++|.+... ++ ..+..+++|++|++++|.+....+..+. .++.++.|.+....
T Consensus 115 -~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~l~~n~-- 183 (549)
T 2z81_A 115 -VTSLFPNLTNLQTLRIGNVETFSE----IRRIDFAGLTSLNELEIKALSLRNYQSQSLK----SIRDIHHLTLHLSE-- 183 (549)
T ss_dssp -SSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTCCEEEEEEEEETTCCEECTTTTT----TCSEEEEEEEECSB--
T ss_pred -hhhhhhccCCccEEECCCCccccc----cCHhhhhcccccCeeeccCCcccccChhhhh----ccccCceEecccCc--
Confidence 223345566666666666652211 11 2445566666666666665543322221 12233222222111
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
...........+++|++|++++|.+......
T Consensus 184 -------------------------------------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 184 -------------------------------------------------SAFLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp -------------------------------------------------STTHHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred -------------------------------------------------ccccchhhHhhcccccEEEccCCcccccccc
Confidence 0111222234568999999999888542100
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccC--------------------cCCCC------------
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESS--------------------KKEGS------------ 291 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~--------------------~~~~~------------ 291 (472)
... ....+++|+.|++++|.+++.....+.+.+....... ..+..
T Consensus 215 ~~~---~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 215 PLP---VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCS---SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred ccc---hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 000 0012345666666666665555544443322110000 00000
Q ss_pred -----------------CcceeEEEcCCCCCChhhHHHHHHHH-hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccE
Q psy3611 292 -----------------PLALKVFIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRH 353 (472)
Q Consensus 292 -----------------~~~L~~L~l~~~~l~~~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 353 (472)
+++|+.|++++|.+.. ++..+ ..+++|+.|++++|++...... -...+..+++|++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~l~~L~~ 365 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLK-NSACKGAWPSLQT 365 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHH-HHTCTTSSTTCCE
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCcccc-----CCHHHHhcCccccEEEccCCcccccccc-chhhhhccccCcE
Confidence 1234455555554442 33332 3456666666666665532100 0112344556666
Q ss_pred EEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH-----
Q psy3611 354 LNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA----- 428 (472)
Q Consensus 354 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----- 428 (472)
|++++|.++ +.......+..+++|++|++++|.++. ++..+..+++|+.|++++|.+.. ++..
T Consensus 366 L~Ls~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l~~-----l~~~~~~~L 433 (549)
T 2z81_A 366 LVLSQNHLR--SMQKTGEILLTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRV-----VKTCIPQTL 433 (549)
T ss_dssp EECTTSCCC--CHHHHHHHGGGCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCCSC-----CCTTSCTTC
T ss_pred EEccCCccc--ccccchhhhhcCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCccc-----ccchhcCCc
Confidence 666666555 222222345555666666666665553 34444444555555555554432 1111
Q ss_pred -------------HhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 429 -------------MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 429 -------------l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
...+++|++|++++|+++. +. . ....++|+.|+++++
T Consensus 434 ~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~--ip---~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKT--LP---D-ASLFPVLLVMKISRN 483 (549)
T ss_dssp SEEECCSSCCSCCCCCCTTCCEEECCSSCCSS--CC---C-GGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhcccCChhcEEECCCCccCc--CC---C-cccCccCCEEecCCC
Confidence 1356677777777777652 11 1 134677777777765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-26 Score=225.61 Aligned_cols=294 Identities=19% Similarity=0.214 Sum_probs=223.5
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
..|.++++|++|++++|.+... .+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++.
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~--- 131 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIEEI----DTYAFAYAHTIQKLYMGFNAIR--YLPP--HVFQNVPLLTVLVLERNDLSS--- 131 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCC---
T ss_pred hHhcccccCcEEECCCCccccc----ChhhccCCCCcCEEECCCCCCC--cCCH--HHhcCCCCCCEEECCCCccCc---
Confidence 4588999999999999998862 2457888999999999999985 3333 567889999999999999985
Q ss_pred HHHHH-HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCC
Q psy3611 84 SSIAK-YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEG 162 (472)
Q Consensus 84 ~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~ 162 (472)
++. .+..+++|++|++++|.+... .+..+..+++|++|++++|.++... +..++.++.+......
T Consensus 132 --l~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~l~~L~~L~l~~n~- 197 (390)
T 3o6n_A 132 --LPRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNL- 197 (390)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCCBC----CTTTTSSCTTCCEEECCSSCCSBCC-------GGGCTTCSEEECCSSC-
T ss_pred --CCHHHhcCCCCCcEEECCCCccCcc----ChhhccCCCCCCEEECCCCcCCccc-------cccccccceeeccccc-
Confidence 333 346789999999999999863 3455778899999999999887642 2224444333322110
Q ss_pred CCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhH
Q psy3611 163 ECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGV 242 (472)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 242 (472)
... +.....|++|++++|.+.....
T Consensus 198 --l~~-----------------------------------------------------~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 198 --LST-----------------------------------------------------LAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp --CSE-----------------------------------------------------EECCSSCSEEECCSSCCCEEEC
T ss_pred --ccc-----------------------------------------------------cCCCCcceEEECCCCeeeeccc
Confidence 000 1223689999999999965432
Q ss_pred HHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCC
Q psy3611 243 EGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKT 322 (472)
Q Consensus 243 ~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~ 322 (472)
...++|++|++++|.+++.. .++.+++|+.|++++|.+.+. .+..+..+++
T Consensus 223 ---------~~~~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~ 273 (390)
T 3o6n_A 223 ---------PVNVELTILKLQHNNLTDTA----------------WLLNYPGLVEVDLSYNELEKI----MYHPFVKMQR 273 (390)
T ss_dssp ---------CCCSSCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCSSCCCEE----ESGGGTTCSS
T ss_pred ---------cccccccEEECCCCCCcccH----------------HHcCCCCccEEECCCCcCCCc----ChhHcccccc
Confidence 12368999999999997541 123468999999999999874 4567788999
Q ss_pred ccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhh
Q psy3611 323 LERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 402 (472)
Q Consensus 323 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 402 (472)
|++|++++|+++.. +..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.+++. + +.
T Consensus 274 L~~L~L~~n~l~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~-----~--~~ 336 (390)
T 3o6n_A 274 LERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTL-----K--LS 336 (390)
T ss_dssp CCEEECCSSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCC-----C--CC
T ss_pred CCEEECCCCcCccc-----CcccCCCCCCCEEECCCCccee-----cCccccccCcCCEEECCCCcccee-----C--ch
Confidence 99999999999843 3344578999999999999873 223455678999999999999863 2 56
Q ss_pred cCCCCCEEECcCCCCCchhHH
Q psy3611 403 DNTTLEDVNLTCNEISVQGGL 423 (472)
Q Consensus 403 ~~~~L~~L~L~~n~i~~~~~~ 423 (472)
.+++|+.|++++|.+..++..
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHHH
T ss_pred hhccCCEEEcCCCCccchhHH
Confidence 789999999999999876543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-26 Score=233.43 Aligned_cols=401 Identities=17% Similarity=0.162 Sum_probs=233.6
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++. ++..
T Consensus 52 ~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIR--SLDF--HVFLFNQDLEYLDVSHNRLQN-----ISCC 118 (562)
T ss_dssp TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCC--EECT--TTTTTCTTCCEEECTTSCCCE-----ECSC
T ss_pred CCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCC--cCCH--HHhCCCCCCCEEECCCCcCCc-----cCcc
Confidence 567778888777765 22456777778888888887775 3333 456777788888888887764 3332
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhh--HHhhhccC----CCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA--AALVLEDD----EGE 163 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l--~~L~~~~~----~~~ 163 (472)
.+++|++|++++|.+... .++..+..+++|++|++++|.+..... ..++.+ +.|.+... .+.
T Consensus 119 --~l~~L~~L~Ls~N~l~~l---~~p~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVL---PVCKEFGNLTKLTFLGLSAAKFRQLDL-------LPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBC---CCCGGGGGCTTCCEEEEECSBCCTTTT-------GGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCcccc---CchHhhcccCcccEEecCCCccccCch-------hhhhhceeeEEEeeccccccccc
Confidence 567788888888877652 123566777788888888877765321 112222 33333221 111
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCccc----------ccccccCCCCcccccchhhhhhhhcCCcccEEeCC
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN----------ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLS 233 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 233 (472)
....+........ .. .+....+..... .......+....... ......+...+.|+.|++.
T Consensus 187 ~~~~l~~l~~~~l-------~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l-~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 187 ETESLQIPNTTVL-------HL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL-MTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SCCEEEECCEEEE-------EE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH-HHHHHHHHSCSSCEEEEEE
T ss_pred CcccccccCcceE-------EE-EecCccchhhhhhhcccccceEEEecccccccccchH-HHHHHHHhccCcceEEEec
Confidence 1111111000000 00 000000000000 000000000000000 1111234556777777777
Q ss_pred CCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhH---H-------------------------HHHHHHHHh----
Q psy3611 234 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITG---C-------------------------KLLSKALHD---- 281 (472)
Q Consensus 234 ~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~---~-------------------------~~l~~~l~~---- 281 (472)
++.++......+...+. .++|++|++++|.+++.. . ..+...+..
T Consensus 258 ~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred CCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 77776655555554432 247888988888765210 0 111111111
Q ss_pred -hcc-----cCcC-CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEE
Q psy3611 282 -CYE-----SSKK-EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHL 354 (472)
Q Consensus 282 -~~~-----~~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 354 (472)
... ..-. .+.+++|+.|++++|.+.+. .+..+..+++|+.|++++|+++.. ..++..+..+++|++|
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETL 408 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEE
T ss_pred EEEccCCCcccccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEE
Confidence 000 0000 15678899999999998863 556677889999999999998843 2556678889999999
Q ss_pred EccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCc
Q psy3611 355 NLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK 434 (472)
Q Consensus 355 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 434 (472)
++++|.++.. ... ..+..+++|+.|++++|.+++. ++..+. ++|+.|++++|.++. ++..+..+++
T Consensus 409 ~l~~N~l~~~-~~~--~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~ 474 (562)
T 3a79_B 409 DVSLNSLNSH-AYD--RTCAWAESILVLNLSSNMLTGS----VFRCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQA 474 (562)
T ss_dssp ECTTSCCBSC-CSS--CCCCCCTTCCEEECCSSCCCGG----GGSSCC--TTCSEEECCSSCCCC-----CCTTTTSSCC
T ss_pred ECCCCcCCCc-cCh--hhhcCcccCCEEECCCCCCCcc----hhhhhc--CcCCEEECCCCcCcc-----cChhhcCCCC
Confidence 9999988731 100 2355678888999988888753 333222 688888888888875 6666667888
Q ss_pred ccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 435 LKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 435 L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
|++|++++|+++..... .+..+++|+.|++++|
T Consensus 475 L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 475 LQELNVASNQLKSVPDG----VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CSEEECCSSCCCCCCTT----STTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCCCCHH----HHhcCCCCCEEEecCC
Confidence 88888888887632111 3566888888888876
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-26 Score=232.52 Aligned_cols=303 Identities=19% Similarity=0.184 Sum_probs=210.0
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|+|++|.++... +..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++... +..
T Consensus 32 ~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~--~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVS--AVEP--GAFNNLFNLRTLGLRSNRLKLIP----LGV 99 (477)
T ss_dssp TTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCC--EECT--TTTTTCTTCCEEECCSSCCCSCC----TTS
T ss_pred CCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccC--EeCh--hhhhCCccCCEEECCCCcCCccC----ccc
Confidence 35666777776666522 445666667777777766664 2223 44566667777777776666421 123
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------------ 145 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISH------------------------------ 145 (477)
T ss_dssp STTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECT------------------------------
T ss_pred ccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeCh------------------------------
Confidence 44566677777777666642 23445566667777776665543110
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
..+..+++|++|++++|.++......+.
T Consensus 146 -------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--- 173 (477)
T 2id5_A 146 -------------------------------------------------RAFSGLNSLEQLTLEKCNLTSIPTEALS--- 173 (477)
T ss_dssp -------------------------------------------------TSSTTCTTCCEEEEESCCCSSCCHHHHT---
T ss_pred -------------------------------------------------hhccCCCCCCEEECCCCcCcccChhHhc---
Confidence 1133458999999999999766554443
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
.+++|+.|++++|.++... ...+..+++|+.|++++|..... ++.......+|++|+++
T Consensus 174 ---~l~~L~~L~l~~n~i~~~~--------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 174 ---HLHGLIVLRLRHLNINAIR--------------DYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp ---TCTTCCEEEEESCCCCEEC--------------TTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEE
T ss_pred ---ccCCCcEEeCCCCcCcEeC--------------hhhcccCcccceeeCCCCccccc----cCcccccCccccEEECc
Confidence 4578999999999986432 12355678999999999876553 44444455699999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCE
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 409 (472)
+|+++... ...+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+. .+..+..+++|+.
T Consensus 233 ~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 300 (477)
T 2id5_A 233 HCNLTAVP----YLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVV----EPYAFRGLNYLRV 300 (477)
T ss_dssp SSCCCSCC----HHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCSEE----CTTTBTTCTTCCE
T ss_pred CCcccccC----HHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccceE----CHHHhcCcccCCE
Confidence 99988443 3567789999999999999884332 4567889999999999999874 3567788899999
Q ss_pred EECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 410 VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 410 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
|+|++|.++.. .+..+..+++|++|++++|++..
T Consensus 301 L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 301 LNVSGNQLTTL----EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EECCSSCCSCC----CGGGBSCGGGCCEEECCSSCEEC
T ss_pred EECCCCcCcee----CHhHcCCCcccCEEEccCCCccC
Confidence 99999998873 23456778899999999999754
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-27 Score=243.01 Aligned_cols=120 Identities=23% Similarity=0.231 Sum_probs=72.4
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+|.++++|++|++++|.+... .+..+..+++|++|++++|.+.. ..+ ..+..+++|++|++++|.++...
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~~~l~~L~~L~L~~n~l~~l~-- 116 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQS--LAL--GAFSGLSSLQKLVAVETNLASLE-- 116 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCE--ECT--TTTTTCTTCCEEECTTSCCCCST--
T ss_pred HhhCCCCceEEECCCCcCCcc----CcccccCchhCCEEeCcCCcCCc--cCH--hhhcCccccccccccccccccCC--
Confidence 466667777777777766541 23456666777777777766542 222 34566677777777777665421
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 139 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~ 139 (472)
...++.+++|++|++++|.+... .++..+..+++|++|++++|.+....+
T Consensus 117 --~~~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 117 --NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp --TCSCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred --CccccccccccEEecCCCcccee---cChhhhcccCCCCEEeCcCCccceecH
Confidence 11245567777777777766542 134556667777777777776655433
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-26 Score=237.03 Aligned_cols=312 Identities=18% Similarity=0.244 Sum_probs=206.4
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
+++++.++++++.++... +..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+.
T Consensus 50 l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIE--EIDT--YAFAYAHTIQKLYMGFNAIRYL----PPH 117 (597)
T ss_dssp GCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCC--EECT--TTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCC--CCCh--HHhcCCCCCCEEECCCCcCCCC----CHH
Confidence 567778888877766422 334566778888888888775 2323 4567778888888888877763 234
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHH-hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
.++.+++|++|++++|.++. ++.. +..+++|++|++++|.+....+..+. .++.|+.|.+....-. .
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N~l~---~ 185 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ----ATTSLQNLQLSSNRLT---H 185 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTT----TCTTCCEEECTTSCCS---B
T ss_pred HHcCCCCCCEEEeeCCCCCC-----CCHHHhccCCCCCEEEeeCCcCCCCChhhhh----cCCcCcEEECcCCCCC---C
Confidence 45667788888888887774 3333 46677888888888777643322221 1333333322211000 0
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
+ .+..++.|+.|++++|.++...
T Consensus 186 ~---------------------------------------------------~~~~l~~L~~L~l~~n~l~~l~------ 208 (597)
T 3oja_B 186 V---------------------------------------------------DLSLIPSLFHANVSYNLLSTLA------ 208 (597)
T ss_dssp C---------------------------------------------------CGGGCTTCSEEECCSSCCSEEE------
T ss_pred c---------------------------------------------------ChhhhhhhhhhhcccCcccccc------
Confidence 0 0223467888888888775432
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
..++|+.|++++|.++.... ..+++|+.|++++|.+.+. .++..+++|+.|+
T Consensus 209 -----~~~~L~~L~ls~n~l~~~~~-----------------~~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~ 260 (597)
T 3oja_B 209 -----IPIAVEELDASHNSINVVRG-----------------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVD 260 (597)
T ss_dssp -----CCTTCSEEECCSSCCCEEEC-----------------SCCSCCCEEECCSSCCCCC------GGGGGCTTCSEEE
T ss_pred -----CCchhheeeccCCccccccc-----------------ccCCCCCEEECCCCCCCCC------hhhccCCCCCEEE
Confidence 22468888888888753221 1125788888888888752 3567788889999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCC
Q psy3611 328 MPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407 (472)
Q Consensus 328 l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 407 (472)
+++|.+.... +..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+.. ++..+..+++|
T Consensus 261 Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L 326 (597)
T 3oja_B 261 LSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRL 326 (597)
T ss_dssp CCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTC
T ss_pred CCCCccCCCC----HHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCc-----cCcccccCCCC
Confidence 9888887432 45677788889999988888731 2334557888899998888875 55556667888
Q ss_pred CEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHH
Q psy3611 408 EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV 450 (472)
Q Consensus 408 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~ 450 (472)
+.|+|++|.+... + +..+++|++|++++|++.....
T Consensus 327 ~~L~L~~N~l~~~-----~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 327 ENLYLDHNSIVTL-----K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SEEECCSSCCCCC-----C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CEEECCCCCCCCc-----C--hhhcCCCCEEEeeCCCCCChhH
Confidence 8999988888763 2 5677888889999888876543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=217.38 Aligned_cols=320 Identities=20% Similarity=0.228 Sum_probs=239.1
Q ss_pred CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 37 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
+++++.|++.++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +.
T Consensus 45 l~~l~~L~l~~~~i~~---l~---~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~-----~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS---ID---GVEYLNNLTQINFSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADI-----TP 107 (466)
T ss_dssp HHTCCEEECCSSCCCC---CT---TGGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC-----GG
T ss_pred hccccEEecCCCCCcc---Cc---chhhhcCCCEEECCCCccCCc-----hh-hhccccCCEEECCCCccccC-----hh
Confidence 4689999999998753 22 367899999999999999874 23 77899999999999999863 22
Q ss_pred HhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCc
Q psy3611 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (472)
+..+++|++|++++|.+....+ +..++.|+.|.+....-. .++ .......++.+++...
T Consensus 108 -~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~---~~~-----------~~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 108 -LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTIS---DIS-----------ALSGLTSLQQLSFGNQ 166 (466)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEEC---CCG-----------GGTTCTTCSEEEEEES
T ss_pred -hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccC---CCh-----------hhccCCcccEeecCCc
Confidence 7889999999999998876432 455777777666543211 011 1122223333322100
Q ss_pred ccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH
Q psy3611 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~ 276 (472)
.... ..+..++.|++|++++|.+.... .+ ..+++|++|++++|.+++...
T Consensus 167 ----------------~~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l------~~l~~L~~L~l~~n~l~~~~~---- 216 (466)
T 1o6v_A 167 ----------------VTDL--KPLANLTTLERLDISSNKVSDIS--VL------AKLTNLESLIATNNQISDITP---- 216 (466)
T ss_dssp ----------------CCCC--GGGTTCTTCCEEECCSSCCCCCG--GG------GGCTTCSEEECCSSCCCCCGG----
T ss_pred ----------------ccCc--hhhccCCCCCEEECcCCcCCCCh--hh------ccCCCCCEEEecCCccccccc----
Confidence 0001 12567799999999999986542 11 346799999999999875421
Q ss_pred HHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEc
Q psy3611 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 356 (472)
++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.... .+..+++|++|++
T Consensus 217 ------------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l 272 (466)
T 1o6v_A 217 ------------LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKL 272 (466)
T ss_dssp ------------GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCG------GGTTCTTCSEEEC
T ss_pred ------------ccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCCccccch------hhhcCCCCCEEEC
Confidence 23367899999999999863 24678999999999999998442 2778999999999
Q ss_pred cCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCccc
Q psy3611 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436 (472)
Q Consensus 357 ~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 436 (472)
++|.+.... .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+. .. +..+++|+
T Consensus 273 ~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~ 334 (466)
T 1o6v_A 273 GANQISNIS------PLAGLTALTNLELNENQLEDI-----SP-ISNLKNLTYLTLYFNNISDI-----SP-VSSLTKLQ 334 (466)
T ss_dssp CSSCCCCCG------GGTTCTTCSEEECCSSCCSCC-----GG-GGGCTTCSEEECCSSCCSCC-----GG-GGGCTTCC
T ss_pred CCCccCccc------cccCCCccCeEEcCCCcccCc-----hh-hcCCCCCCEEECcCCcCCCc-----hh-hccCccCC
Confidence 999998421 267899999999999999863 22 67889999999999999874 22 77899999
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
+|++++|++++. ..+..+++|+.|+++++.
T Consensus 335 ~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 335 RLFFYNNKVSDV------SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSCCCCC------GGGTTCTTCCEEECCSSC
T ss_pred EeECCCCccCCc------hhhccCCCCCEEeCCCCc
Confidence 999999998764 246779999999999863
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-27 Score=246.67 Aligned_cols=166 Identities=15% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhH--HH----------------H-HH-HHHhcC
Q psy3611 289 EGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG--IT----------------A-LS-DAFEEN 348 (472)
Q Consensus 289 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~--~~----------------~-l~-~~l~~~ 348 (472)
++.+++|+.|++++|.+...+ ..+..+..+++|++|++++|.+.... +. . .+ ..+..+
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSG--CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEE--ECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCCCCCEEECcCCccCCCc--chhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 345667777777777665421 01344556666666666666544211 00 0 01 133344
Q ss_pred CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH
Q psy3611 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428 (472)
Q Consensus 349 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 428 (472)
++|++|++++|.+... .+..+..+++|++|++++|.+.+.. ++..+..+++|+.|++++|.++.. .+..
T Consensus 424 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 492 (606)
T 3vq2_A 424 EKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI----SWGV 492 (606)
T ss_dssp TTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE----CTTT
T ss_pred ccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc----Chhh
Confidence 4455555555544421 1133455566666666666555311 244556667777777777777663 3455
Q ss_pred HhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 429 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 429 l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+..+++|++|++++|+++.... ..+..+++|+.|+++++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEG----GGTTTCTTCCEEECTTS
T ss_pred hcccccCCEEECCCCcCCCcCH----HHccCCCcCCEEECCCC
Confidence 6677777777777777765332 34455777888887775
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=232.43 Aligned_cols=293 Identities=19% Similarity=0.205 Sum_probs=224.3
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.++++|++|+|++|.+.. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++..
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~l-- 138 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIR--YLPP--HVFQNVPLLTVLVLERNDLSSL-- 138 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCCC--
T ss_pred HHHccCCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCC--CCCH--HHHcCCCCCCEEEeeCCCCCCC--
Confidence 468899999999999999886 23557889999999999999986 3334 5678999999999999999863
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
.+..++.+++|++|++++|.++.. .+..+..+++|++|++++|.++... +..++.++.|.+....
T Consensus 139 --~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~-- 203 (597)
T 3oja_B 139 --PRGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNL-- 203 (597)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSC--
T ss_pred --CHHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCc--
Confidence 223357789999999999999863 3556788999999999999887642 1224444333322110
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
... +.....|++|++++|.++.....
T Consensus 204 -l~~-----------------------------------------------------l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 204 -LST-----------------------------------------------------LAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp -CSE-----------------------------------------------------EECCTTCSEEECCSSCCCEEECS
T ss_pred -ccc-----------------------------------------------------ccCCchhheeeccCCcccccccc
Confidence 000 12246899999999998654321
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
..++|+.|++++|.+++. ..++.+++|+.|++++|.+.+. .+..+..+++|
T Consensus 230 ---------~~~~L~~L~L~~n~l~~~----------------~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L 280 (597)
T 3oja_B 230 ---------VNVELTILKLQHNNLTDT----------------AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRL 280 (597)
T ss_dssp ---------CCSCCCEEECCSSCCCCC----------------GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSC
T ss_pred ---------cCCCCCEEECCCCCCCCC----------------hhhccCCCCCEEECCCCccCCC----CHHHhcCccCC
Confidence 125899999999999753 1234478999999999999874 45677889999
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.|++++|.++. ++..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.+. + +..
T Consensus 281 ~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~~-----~--~~~ 343 (597)
T 3oja_B 281 ERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTL-----K--LST 343 (597)
T ss_dssp CEEECTTSCCCE-----EECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCC-----C--CCT
T ss_pred CEEECCCCCCCC-----CCcccccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCCCCc-----C--hhh
Confidence 999999999984 23444568999999999999983 234456689999999999999863 2 567
Q ss_pred CCCCCEEECcCCCCCchh
Q psy3611 404 NTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~ 421 (472)
++.|+.|++++|.+....
T Consensus 344 ~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCCCSEEECCSSCEEHHH
T ss_pred cCCCCEEEeeCCCCCChh
Confidence 799999999999988654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-25 Score=236.76 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=130.6
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.+.......+... ..++|++|++++|.++... +..++.+++|+.|++++|.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l----~~~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNNLNVVG--------------NDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGG----GGSCCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECCSCC
T ss_pred ccccEEEccCCcccccChhHhhcc----CcCCCCEEECCCCCcCccC--------------cccccCcccccEeeCCCCc
Confidence 566666666666644433333221 1124777777776665321 1223456777888888777
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChh-HHHHHHH----HHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCC
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHV-GITALSD----AFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~----~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 379 (472)
+... .+.++..+++|+.|++++|..... ....++. .+..+++|++|++++|.+.... +..+..+++|
T Consensus 284 l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L 355 (680)
T 1ziw_A 284 IQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINL 355 (680)
T ss_dssp BSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTC
T ss_pred cCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCC
Confidence 7653 344566777888888776643310 0111111 4556788888888888877422 2456778888
Q ss_pred cEEEcCCCCCChHHHHHHH-HHhh--cCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 380 AILNLGDCLLKSAGASSIA-KYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~-~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
++|++++|.+.... ++ ..+. ..++|+.|++++|.+... .+..+..+++|++|++++|+++..... ..
T Consensus 356 ~~L~Ls~n~~~~~~---l~~~~f~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~ 425 (680)
T 1ziw_A 356 KYLSLSNSFTSLRT---LTNETFVSLAHSPLHILNLTKNKISKI----ESDAFSWLGHLEVLDLGLNEIGQELTG---QE 425 (680)
T ss_dssp CEEECTTCBSCCCE---ECTTTTGGGTTSCCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCEEECCS---GG
T ss_pred cEEECCCCchhhhh---cchhhhcccccCcCceEECCCCCCCeE----ChhhhhCCCCCCEEeCCCCcCccccCc---cc
Confidence 88888887643211 11 1111 226789999999988874 356778889999999999987542111 34
Q ss_pred HHhCCceeEEecCCC
Q psy3611 457 MKSFGMAAALVLEDD 471 (472)
Q Consensus 457 l~~~~~L~~L~l~~~ 471 (472)
+..+++|+.|+++++
T Consensus 426 ~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 426 WRGLENIFEIYLSYN 440 (680)
T ss_dssp GTTCTTCCEEECCSC
T ss_pred ccCcccccEEecCCC
Confidence 566899999999886
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=241.98 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=91.3
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
++|++|++++|.++.. .+..+..+++|+.|++++|.+... .+.++..+++|+.|++++|.++
T Consensus 266 ~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL--------------NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCCCEEECTTCCCCEE--------------CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCS
T ss_pred CCccEEECCCCccccc--------------ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCC
Confidence 4566666666665422 112334456666666666666542 2334555666666666666654
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHH--------------HHHHHH
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA--------------SSIAKY 400 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~--------------~~l~~~ 400 (472)
... +..+.++++|+.|++++|.+..... ..+..+++|+.|++++|.++.... ..++
T Consensus 328 ~~~----~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~-- 397 (844)
T 3j0a_A 328 ELY----SSNFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP-- 397 (844)
T ss_dssp CCC----SCSCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC--
T ss_pred ccC----HHHhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc--
Confidence 221 3344556666666666666553211 234556666666666666553100 0011
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
....+++.+++++|.+...+ ....+..+++|++|++++|+++..... ..+..+++|+.|+++++
T Consensus 398 -~~~~~l~~L~ls~N~l~~l~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 398 -KINLTANLIHLSENRLENLD---ILYFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGEN 461 (844)
T ss_dssp -CCCTTCCEEECCSCCCCSST---THHHHTTCTTCCEEEEESCCCCCCCSS---SSSCSCTTCCBCEEESC
T ss_pred -ccccccceeecccCccccCc---hhhhhhcCCccceeeCCCCcccccccc---cccccCCccccccCCCC
Confidence 01234444555555444422 122344566777777777666432111 01223566666666654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-26 Score=228.01 Aligned_cols=317 Identities=19% Similarity=0.217 Sum_probs=242.3
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
+.++.+++.++. +|..+ .+++++|++++|.+.. ..+ ..|..+++|++|++++|.+++. .+..+..
T Consensus 14 ~~v~c~~~~l~~-----ip~~~--~~~l~~L~L~~n~l~~--~~~--~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVA-----VPEGI--PTETRLLDLGKNRIKT--LNQ--DEFASFPHLEELELNENIVSAV----EPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSS-----CCSCC--CTTCSEEECCSSCCCE--ECT--TTTTTCTTCCEEECTTSCCCEE----CTTTTTT
T ss_pred CEEEeCCCCcCc-----CCCCC--CCCCcEEECCCCccce--ECH--hHccCCCCCCEEECCCCccCEe----ChhhhhC
Confidence 577777777663 45443 3689999999999863 333 5688999999999999999874 3556778
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchh
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEE 172 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~ 172 (472)
+++|++|++++|.++.. ....+..+++|++|++++|.+....+.
T Consensus 79 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~-------------------------------- 122 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLI----PLGVFTGLSNLTKLDISENKIVILLDY-------------------------------- 122 (477)
T ss_dssp CTTCCEEECCSSCCCSC----CTTSSTTCTTCCEEECTTSCCCEECTT--------------------------------
T ss_pred CccCCEEECCCCcCCcc----CcccccCCCCCCEEECCCCccccCChh--------------------------------
Confidence 89999999999998852 123457789999999999988642111
Q ss_pred hhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhcc
Q psy3611 173 SEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSS 252 (472)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~ 252 (472)
.+..+++|++|++++|.+.......+ .
T Consensus 123 -----------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~------~ 149 (477)
T 2id5_A 123 -----------------------------------------------MFQDLYNLKSLEVGDNDLVYISHRAF------S 149 (477)
T ss_dssp -----------------------------------------------TTTTCTTCCEEEECCTTCCEECTTSS------T
T ss_pred -----------------------------------------------HccccccCCEEECCCCccceeChhhc------c
Confidence 12345899999999999866544333 3
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 332 (472)
.+++|++|++++|.++......+ ..+++|+.|++++|.+... .+..+..+++|+.|++++|.
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l--------------~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEAL--------------SHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHH--------------TTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCT
T ss_pred CCCCCCEEECCCCcCcccChhHh--------------cccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCc
Confidence 46799999999999876543333 3368999999999999863 23356788999999999987
Q ss_pred CChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEC
Q psy3611 333 IYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNL 412 (472)
Q Consensus 333 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L 412 (472)
.... ++.......+|++|++++|.++.... ..+..+++|+.|++++|.+.+. .+..+..+++|+.|+|
T Consensus 212 ~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 212 YLDT----MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTI----EGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCE----ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEE----CTTSCTTCTTCCEEEC
T ss_pred cccc----cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCcc----ChhhccccccCCEEEC
Confidence 5432 22333345689999999999985332 5678899999999999999864 3356678899999999
Q ss_pred cCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 413 TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 413 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++|.+... .+..+..+++|++|++++|.++.... ..+..+++|+.|++++|
T Consensus 280 ~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 280 VGGQLAVV----EPYAFRGLNYLRVLNVSGNQLTTLEE----SVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSSCCSEE----CTTTBTTCTTCCEEECCSSCCSCCCG----GGBSCGGGCCEEECCSS
T ss_pred CCCccceE----CHHHhcCcccCCEEECCCCcCceeCH----hHcCCCcccCEEEccCC
Confidence 99999874 36678889999999999999875433 34456889999999987
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=221.83 Aligned_cols=371 Identities=17% Similarity=0.152 Sum_probs=235.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
++.|.++++|++|++++|.++. ..+..+..+++|++|++++|.+. .++ .. .+++|++|++++|.+++.
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~---~lp--~~--~l~~L~~L~Ls~N~l~~l- 136 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQ---NIS--CC--PMASLRHLDLSFNDFDVL- 136 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCC---EEC--SC--CCTTCSEEECCSSCCSBC-
T ss_pred hhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCC---ccC--cc--ccccCCEEECCCCCcccc-
Confidence 3578999999999999999886 23677888999999999999985 334 22 688999999999998864
Q ss_pred HHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCc--cEEEecCCcC--Chh---------------------
Q psy3611 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL--KQINVSENQF--GEE--------------------- 137 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L--~~L~l~~~~i--~~~--------------------- 137 (472)
.++..++.+++|++|++++|.+...+ +..+++| ++|++++|.+ ...
T Consensus 137 --~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 137 --PVCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp --CCCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred --CchHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 23456788899999999999887632 2223333 7777776655 111
Q ss_pred -----------------------------hHHHHHHHHHhchhhHHhhhccCCC--CCCccccchhhhcccCCccccCCC
Q psy3611 138 -----------------------------GVEEMEKLMKSFGMAAALVLEDDEG--ECSDEEQDEESEEENDSDAEGDNS 186 (472)
Q Consensus 138 -----------------------------~~~~l~~~l~~~~~l~~L~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 186 (472)
........+...+.++.+.+....- .....++... .. ......
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~---~~L~~L 281 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF---WP---RPVEYL 281 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH---TT---SSEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh---hc---ccccEE
Confidence 1111222233333333222221100 0000000000 00 000000
Q ss_pred ccCCCCCCCcccc-----------c---ccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhcc
Q psy3611 187 NLSHNDSNHSHNA-----------S---NQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSS 252 (472)
Q Consensus 187 ~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~ 252 (472)
++.+..+....+. . .....+.. ..........+ ....|++|++++|.+..... ..
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~-~~~~L~~L~l~~n~~~~~~~--------~~ 350 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF-AEMNIKMLSISDTPFIHMVC--------PP 350 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH-HTCCCSEEEEESSCCCCCCC--------CS
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh-ccCcceEEEccCCCcccccC--------cc
Confidence 0000000000000 0 00000000 00001111111 22578888888888744321 02
Q ss_pred CCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC
Q psy3611 253 CCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG 332 (472)
Q Consensus 253 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 332 (472)
.+++|++|++++|.+++.. +..++.+++|+.|++++|.+... ..++..+..+++|+.|++++|+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSV--------------FQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SCCCCCEEECCSSCCCTTT--------------TTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSC
T ss_pred CCCCceEEECCCCccccch--------------hhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCc
Confidence 4578999999999987422 23456678999999999999852 2356677889999999999999
Q ss_pred CChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC-CCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 333 IYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 333 i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
++.. ++ ..+..+++|++|++++|.++.. ..... ++|+.|++++|.++. ++..+..+++|+.|
T Consensus 415 l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L 478 (562)
T 3a79_B 415 LNSH----AYDRTCAWAESILVLNLSSNMLTGS-------VFRCLPPKVKVLDLHNNRIMS-----IPKDVTHLQALQEL 478 (562)
T ss_dssp CBSC----CSSCCCCCCTTCCEEECCSSCCCGG-------GGSSCCTTCSEEECCSSCCCC-----CCTTTTSSCCCSEE
T ss_pred CCCc----cChhhhcCcccCCEEECCCCCCCcc-------hhhhhcCcCCEEECCCCcCcc-----cChhhcCCCCCCEE
Confidence 8741 12 2456789999999999999732 12233 699999999999985 77766788999999
Q ss_pred ECcCCCCCchhHHHHHHH-HhcCCcccEEEccCCCCChh
Q psy3611 411 NLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~i~~~ 448 (472)
++++|.++. ++.. +..+++|++|++++|++...
T Consensus 479 ~L~~N~l~~-----l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 479 NVASNQLKS-----VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCCC-----CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCCC-----CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999999986 5655 78899999999999998754
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-26 Score=234.45 Aligned_cols=390 Identities=17% Similarity=0.161 Sum_probs=206.1
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.++++|++|++++|.+... .+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+.
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~-- 139 (570)
T 2z63_A 70 GAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSF-- 139 (570)
T ss_dssp TTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTSCCCCSTT----CSCTTCTTCCEEECCSSCCCCC--
T ss_pred ccccCchhCCEEeCcCCcCCcc----CHhhhcCccccccccccccccccCCC----ccccccccccEEecCCCcccee--
Confidence 5688999999999999988862 25678899999999999998864332 2378899999999999988763
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCc----cEEEecCCcCChhhHHH------------------
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL----KQINVSENQFGEEGVEE------------------ 141 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L----~~L~l~~~~i~~~~~~~------------------ 141 (472)
.++..++.+++|++|++++|.++... +..+..+++| +.|++++|.+....+..
T Consensus 140 -~lp~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 140 -KLPEYFSNLTNLEHLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214 (570)
T ss_dssp -CCCGGGGGCTTCCEEECTTSCCCEEC----GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCT
T ss_pred -cChhhhcccCCCCEEeCcCCccceec----HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccc
Confidence 24667888999999999999887632 2223333344 56666666554322211
Q ss_pred --HHHHHHhchhhHHhh--hccCCC---------CCCccccchh----------hhcccCCccccCCCccCCCCCCCccc
Q psy3611 142 --MEKLMKSFGMAAALV--LEDDEG---------ECSDEEQDEE----------SEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 142 --l~~~l~~~~~l~~L~--~~~~~~---------~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
+...+..++.+..+. ...+.. .....+.... ..............+++.+++..-..
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 111122222221100 000000 0000000000 00000000011111111111110000
Q ss_pred cc------------ccccCCCCcccccch--------------hhhhhhhcCCcccEEeCCCCCCChhh--HHHHHHHHh
Q psy3611 199 AS------------NQSHNNSNQSHNTSN--------------QSHMSLKTGARLVELDLSDNAFGPIG--VEGLADLLR 250 (472)
Q Consensus 199 ~~------------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~l~ 250 (472)
.. ....++......... ........+++|++|++++|.++... ...+.
T Consensus 295 ~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---- 370 (570)
T 2z63_A 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF---- 370 (570)
T ss_dssp CSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH----
T ss_pred hhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc----
Confidence 00 000000000000000 00000034466666666666664332 12221
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
.+++|++|++++|.++... ..++.+++|+.|++++|.+.... ....+..+++|+.|++++
T Consensus 371 --~~~~L~~L~l~~n~l~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 371 --GTTSLKYLDLSFNGVITMS---------------SNFLGLEQLEHLDFQHSNLKQMS---EFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp --TCSCCCEEECCSCSEEEEE---------------EEEETCTTCCEEECTTSEEESCT---TSCTTTTCTTCCEEECTT
T ss_pred --ccCccCEEECCCCcccccc---------------ccccccCCCCEEEccCCcccccc---chhhhhcCCCCCEEeCcC
Confidence 2456666666666653211 11334566777777777665420 012345667777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
|.+... .+..+.++++|++|++++|.+.+.. ++..+..+++|+.|++++|.+++. .+..+..+++|+.|
T Consensus 431 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 499 (570)
T 2z63_A 431 THTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVL 499 (570)
T ss_dssp SCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEE
T ss_pred Cccccc----chhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccC----ChhhhhcccCCCEE
Confidence 766532 2345556777777777777664211 224556677777777777777653 34556666777777
Q ss_pred ECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++++|.++.. .+..+..+++|++|++++|+++.
T Consensus 500 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 500 NMASNQLKSV----PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred eCCCCcCCCC----CHHHhhcccCCcEEEecCCcccC
Confidence 7777776653 23456667777777777777654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-25 Score=231.05 Aligned_cols=356 Identities=20% Similarity=0.217 Sum_probs=221.8
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|++++|.++. ..+..+..+++|++|++++|.+. +..+ .++..+++|++|++++|.++... +..
T Consensus 25 ~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~l~----~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTIS--KLEP--ELCQKLPMLKVLNLQHNELSQLS----DKT 92 (680)
T ss_dssp TTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCC--CCCT--THHHHCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccC--ccCH--HHHhcccCcCEEECCCCccCccC----hhh
Confidence 567888888887765 22445777788888888887765 3333 55677788888888888777521 124
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
++.+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+ ..+++|+.|.+....-
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l------- 157 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKI----KNNPFVKQKNLITLDLSHNGLSSTKLGTQ----VQLENLQELLLSNNKI------- 157 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCC----CSCTTTTCTTCCEEECCSSCCSCCCCCSS----SCCTTCCEEECCSSCC-------
T ss_pred hccCCCCCEEECCCCccCcc----ChhHccccCCCCEEECCCCcccccCchhh----cccccCCEEEccCCcc-------
Confidence 56678888888888877642 22456677788888888877654322211 1123333222211100
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhh--hhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMS--LKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
....... ...+++|++|++++|.+.......+.
T Consensus 158 --------------------------------------------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~- 192 (680)
T 1ziw_A 158 --------------------------------------------QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH- 192 (680)
T ss_dssp --------------------------------------------CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG-
T ss_pred --------------------------------------------cccCHHHhhccccccccEEECCCCcccccChhhhh-
Confidence 0000000 11246788888888877554433332
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcC--CCccE
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKL--KTLER 325 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~--~~L~~ 325 (472)
.+++|+.|++.++.+++.....+...+. .++|+.|++++|.+.+. .+.++..+ ++|++
T Consensus 193 -----~l~~L~~L~l~~~~l~~~~~~~~~~~l~-----------~~~L~~L~L~~n~l~~~----~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 193 -----AIGRLFGLFLNNVQLGPSLTEKLCLELA-----------NTSIRNLSLSNSQLSTT----SNTTFLGLKWTNLTM 252 (680)
T ss_dssp -----GSSEECEEECTTCCCHHHHHHHHHHHHT-----------TSCCCEEECTTSCCCEE----CTTTTGGGGGSCCCE
T ss_pred -----hhhhhhhhhccccccChhhHHHHHHHhh-----------hccccEEEccCCccccc----ChhHhhccCcCCCCE
Confidence 3457888888887776655555544332 25788889988888764 33344444 35999
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHH-HHHHHH----H
Q psy3611 326 VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG-ASSIAK----Y 400 (472)
Q Consensus 326 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~----~ 400 (472)
|++++|.+.... +..+..+++|++|++++|.+.... +..+..+++|+.|++++|.....- ...++. .
T Consensus 253 L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 253 LDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHLF----SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp EECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBSEEC----TTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred EECCCCCcCccC----cccccCcccccEeeCCCCccCccC----hhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 999998887432 455677888999999998887432 256777888999999877544210 001221 4
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHH--hCCceeEEecCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK--SFGMAAALVLEDD 471 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~~ 471 (472)
+..+++|+.|++++|.+... .+..+..+++|++|++++|.++...... ..+. ..++|+.|+++++
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~--~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGI----KSNMFTGLINLKYLSLSNSFTSLRTLTN--ETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCC----CTTTTTTCTTCCEEECTTCBSCCCEECT--TTTGGGTTSCCCEEECTTS
T ss_pred cccCCCCCEEECCCCccCCC----ChhHhccccCCcEEECCCCchhhhhcch--hhhcccccCcCceEECCCC
Confidence 56678999999999988764 3556778889999999988643221110 0111 1357888888875
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-25 Score=235.34 Aligned_cols=112 Identities=24% Similarity=0.294 Sum_probs=87.5
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchH-HHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAI-PLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.++|++|+|++|.++. ..+..+..+++|++|++++|... +.+ + ..+..+++|++|++++|.+.+. .+
T Consensus 23 p~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~--~~i~~--~~f~~L~~L~~L~Ls~N~l~~~----~p 90 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTP--LTIDK--EAFRNLPNLRILDLGSSKIYFL----HP 90 (844)
T ss_dssp CTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCC--CEECT--TTTSSCTTCCEEECTTCCCCEE----CT
T ss_pred CCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCc--cccCH--HHhcCCCCCCEEECCCCcCccc----CH
Confidence 4679999999998876 23567888999999999998542 333 3 5688899999999999998863 45
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHH--hhhCCCccEEEecCCcCCh
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKA--MKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~~~~~L~~L~l~~~~i~~ 136 (472)
..++.+++|++|++++|.+++. ++.. +..+++|++|++++|.+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDA----VLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSC----CSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcc----cccCccccccCCCCEEECCCCcccc
Confidence 6777889999999999988752 2222 6778899999999998764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=209.20 Aligned_cols=301 Identities=18% Similarity=0.167 Sum_probs=209.8
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
.+.++++|++|++++|.++. ++ .+..+++|++|++++|.+... + +..+++|++|++++|.+++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~l~~~---~----~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNNITTL---D----LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSCC---
T ss_pred ChhHcCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCcCCeE---c----cccCCCCCEEECcCCCCcee---
Confidence 46679999999999998885 23 578899999999999998642 3 67889999999999999874
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGEC 164 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~ 164 (472)
+ ++.+++|++|++++|.++.. + +..+++|++|++++|.++... +..++.|+.|.+.....
T Consensus 101 --~--~~~l~~L~~L~L~~N~l~~l-----~--~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~-- 160 (457)
T 3bz5_A 101 --D--VTPLTKLTYLNCDTNKLTKL-----D--VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKK-- 160 (457)
T ss_dssp --C--CTTCTTCCEEECCSSCCSCC-----C--CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSC--
T ss_pred --e--cCCCCcCCEEECCCCcCCee-----c--CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCc--
Confidence 1 67789999999999999862 2 678899999999999887521 22344444443322110
Q ss_pred CccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHH
Q psy3611 165 SDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244 (472)
Q Consensus 165 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 244 (472)
...+ .+..+++|++|++++|.++...
T Consensus 161 ~~~~---------------------------------------------------~~~~l~~L~~L~ls~n~l~~l~--- 186 (457)
T 3bz5_A 161 ITKL---------------------------------------------------DVTPQTQLTTLDCSFNKITELD--- 186 (457)
T ss_dssp CCCC---------------------------------------------------CCTTCTTCCEEECCSSCCCCCC---
T ss_pred cccc---------------------------------------------------ccccCCcCCEEECCCCccceec---
Confidence 0000 1234578888888888885532
Q ss_pred HHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCcc
Q psy3611 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLE 324 (472)
Q Consensus 245 l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~ 324 (472)
...+++|++|++++|.++.. .++.+++|+.|++++|.+.+ ++ +..+++|+
T Consensus 187 ------l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~ 236 (457)
T 3bz5_A 187 ------VSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLT 236 (457)
T ss_dssp ------CTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSCCSC-----CC--CTTCTTCS
T ss_pred ------cccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCcccc-----cC--ccccCCCC
Confidence 13457888888888888643 13446788888888888875 33 56778888
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcc--------cHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYK--------GAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
.|++++|+++... +..+++|+.|++++|.+..- +. + ....+++|+.|++++|...+.
T Consensus 237 ~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~--~--~~~~l~~L~~L~Ls~n~~l~~---- 301 (457)
T 3bz5_A 237 YFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY--F--QAEGCRKIKELDVTHNTQLYL---- 301 (457)
T ss_dssp EEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCE--E--ECTTCTTCCCCCCTTCTTCCE----
T ss_pred EEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCc--c--cccccccCCEEECCCCcccce----
Confidence 8888888887431 23455555555444433210 11 1 124567888888888864321
Q ss_pred HHH--------HhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 397 IAK--------YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 397 l~~--------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++. .+..+++|+.|++++|.++. + .+..+++|++|++++|++++
T Consensus 302 l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-----l--~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 302 LDCQAAGITELDLSQNPKLVYLYLNNTELTE-----L--DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECTTCCCSC-----C--CCTTCTTCSEEECCSSCCCB
T ss_pred eccCCCcceEechhhcccCCEEECCCCcccc-----c--ccccCCcCcEEECCCCCCCC
Confidence 110 24566888999999998876 3 27788899999999998874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=188.30 Aligned_cols=213 Identities=20% Similarity=0.218 Sum_probs=183.8
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.+++..+..++..+... +++|++|+|++|.+++.+...++..+. +|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~L~-------------~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG-RHALDEVNLASCQLDPAGLRTLLPVFL-------------RARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC-SSCEEEEECTTCCCCHHHHHHTHHHHH-------------TEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC-CCCceEEEecCCCCCHHHHHHHHHHHH-------------hccHhhcCCCC
Confidence 7899999999999999999999988643 358999999999999999888877654 58999999999
Q ss_pred CChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 305 LENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 305 l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
+++.++..+...+. .+++|++|++++|.+++.++..++.++..+++|++|++++|.+++.|+..+++.+..+++|+.|+
T Consensus 138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 99999999988885 57899999999999999999999999999999999999999999999989999999999999999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEEE--ccCCCCChhHHH
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQIN--VSENQFGEEGVE 451 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~--l~~n~i~~~~~~ 451 (472)
+++|.+++.|+..++.++..+++|+.|+|++|.|++.|+..+....... ..|+.+. +.++.++.....
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 9999999999999999999999999999999999999988777754433 2388888 778877655433
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=185.60 Aligned_cols=201 Identities=21% Similarity=0.274 Sum_probs=177.9
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
+.|++|++++|.+++.+...++..+... +++|+.|++++|.+++.+...+...+ ++|++|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~---------~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSG---------RHALDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSC---------SSCEEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhC---------CCCceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCC
Confidence 4799999999999999999998887643 35899999999999988777666554 47999999999999
Q ss_pred hhHHHHHHHHHh-cCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 335 HVGITALSDAFE-ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 335 ~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
+.++..++..+. .+++|++|++++|.+++.|+..++..+..+++|++|++++|.+++.|+..++.++..+++|+.|+|+
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 999999998885 5789999999999999989989999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCC-ceeEEe
Q psy3611 414 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALV 467 (472)
Q Consensus 414 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~-~L~~L~ 467 (472)
+|.|++.|+..++.++..+++|++|++++|+|++.+...+.++..... .++.+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEEC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhH
Confidence 999999999999999999999999999999999999998887544331 266665
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-23 Score=199.22 Aligned_cols=296 Identities=21% Similarity=0.231 Sum_probs=189.1
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
++++++++++.+. .+| ..+ .+++++|++++|.+++.. +..+..+++|++|++++|.++.. .+..+
T Consensus 32 ~l~~l~~~~~~l~---~lp--~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVP--KDL--PPDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKI----SPGAF 96 (330)
T ss_dssp ETTEEECTTSCCC---SCC--CSC--CTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCB----CTTTT
T ss_pred CCeEEEecCCCcc---ccC--ccC--CCCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCee----CHHHh
Confidence 6777888777663 223 112 257788888888777632 23456678888888888877752 25566
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccc
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
..+++|++|++++|.+..- +.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-------------------------------~~---------------------------- 117 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-------------------------------PE---------------------------- 117 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-------------------------------CS----------------------------
T ss_pred cCCCCCCEEECCCCcCCcc-------------------------------Ch----------------------------
Confidence 7778888888888766420 00
Q ss_pred ccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH
Q psy3611 199 ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
...+.|++|++++|.++......+. .+++|++|++++|.++..+.
T Consensus 118 -----------------------~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~------ 162 (330)
T 1xku_A 118 -----------------------KMPKTLQELRVHENEITKVRKSVFN------GLNQMIVVELGTNPLKSSGI------ 162 (330)
T ss_dssp -----------------------SCCTTCCEEECCSSCCCBBCHHHHT------TCTTCCEEECCSSCCCGGGB------
T ss_pred -----------------------hhcccccEEECCCCcccccCHhHhc------CCccccEEECCCCcCCccCc------
Confidence 0015777888888877665544442 34678888888887754221
Q ss_pred HHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q psy3611 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358 (472)
Q Consensus 279 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 358 (472)
.+..+..+++|+.|++++|.+.. ++..+ .++|++|++++|+++... +..+..+++|++|++++
T Consensus 163 ------~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 163 ------ENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSF 225 (330)
T ss_dssp ------CTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCS
T ss_pred ------ChhhccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCC
Confidence 11123345678888888887764 32221 367888888888877432 34566778888888888
Q ss_pred CCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH--HhcCCccc
Q psy3611 359 NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA--MKNKTKLK 436 (472)
Q Consensus 359 n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~ 436 (472)
|.++.... ..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.++..+...+... ....+.++
T Consensus 226 n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 226 NSISAVDN----GSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp SCCCEECT----TTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred CcCceeCh----hhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 88774322 356677888888888888874 66667777888888888888776432111110 01235778
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
.+++++|++..... ....+..++.++.++++++
T Consensus 297 ~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSSSCGGGS--CGGGGTTCCCGGGEEC---
T ss_pred ceEeecCccccccc--CccccccccceeEEEeccc
Confidence 88888888764322 2245666788888888765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-23 Score=220.06 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=96.1
Q ss_pred CCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 291 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 291 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.+++++.++++.|.+... .+..+..+++++.|++++|.+... ..+..+..+++|++|++++|.+.... +
T Consensus 443 ~l~~l~~l~ls~n~l~~~----~~~~~~~~~~L~~L~Ls~N~~~~~---~~~~~~~~l~~L~~L~Ls~N~L~~l~----~ 511 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLS----P 511 (635)
T ss_dssp TCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEEC----T
T ss_pred cccccccccccccccccc----cccccccchhhhhhhhhhcccccc---cCchhhhhccccCEEECCCCccCCcC----h
Confidence 344455555555555432 233445566777777777754321 12345666778888888888877321 2
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEEEccCCCCChh-
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEE- 448 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~- 448 (472)
..+..+++|++|++++|.++.. .+..+..+++|+.|+|++|.+... .+..+..+ ++|++|++++|++...
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBC----CCGGGTTCTTCCEEECTTSCCCBC----CSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred HHHcCCCCCCEEECCCCcCCCC----ChhHHhCCCCCCEEECCCCcCCCC----CHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 5567778888888888887753 234566778888888888887763 34556665 4788888888887643
Q ss_pred HHHHHHHHHHhCC
Q psy3611 449 GVEEMEKLMKSFG 461 (472)
Q Consensus 449 ~~~~l~~~l~~~~ 461 (472)
....+.++++...
T Consensus 584 ~~~~~~~wl~~~~ 596 (635)
T 4g8a_A 584 EHQSFLQWIKDQR 596 (635)
T ss_dssp GGHHHHHHHHHTT
T ss_pred CcHHHHHHHHhCC
Confidence 2345666666544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-22 Score=192.24 Aligned_cols=158 Identities=9% Similarity=0.115 Sum_probs=98.2
Q ss_pred CCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHH
Q psy3611 290 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 369 (472)
Q Consensus 290 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l 369 (472)
+.+++|+.|++++|.+... .+..+..+++|++|++++|.++... ...+..+++|++|++++|.++......+
T Consensus 171 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLL----EIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp TTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHH----HHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccch----hhhhhhcccccEEECCCCcccccccccc
Confidence 3345666666666666542 2344556666777777777665322 2233346677777777776664222111
Q ss_pred HHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHH-HhcCCcccEEEccCCCCChh
Q psy3611 370 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA-MKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 370 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~i~~~ 448 (472)
......+.++.+++.++.+.+.+...++..+..+++|+.|++++|.++. ++.. +..+++|++|++++|++...
T Consensus 243 -~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 243 -STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-----cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 1223456777888888888877777777777888888888888888775 4544 36778888888888887654
Q ss_pred H--HHHHHHHHHhCC
Q psy3611 449 G--VEEMEKLMKSFG 461 (472)
Q Consensus 449 ~--~~~l~~~l~~~~ 461 (472)
. ...+..+++...
T Consensus 317 ~~~l~~l~~~~~~~~ 331 (353)
T 2z80_A 317 CPRIDYLSRWLNKNS 331 (353)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhcc
Confidence 3 445556665544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=192.05 Aligned_cols=295 Identities=17% Similarity=0.222 Sum_probs=213.1
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+++.++++++.+.. +|..+ .+.+++|++++|.+... .+ ..+..+++|++|++++|.+++. .+..+
T Consensus 32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~--~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEI--KD--GDFKNLKNLHTLILINNKISKI----SPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCB--CT--TTTTTCTTCCEEECCSSCCCCB----CTTTT
T ss_pred CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEe--Ch--hhhccCCCCCEEECCCCcCCee----CHHHh
Confidence 78999999988774 44333 37899999999998633 22 4678899999999999999864 35667
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
..+++|++|++++|.++. ++..+ .++|++|++++|.+....+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~~~----------------------------- 140 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKE-----LPEKM--PKTLQELRVHENEITKVRKSV----------------------------- 140 (330)
T ss_dssp TTCTTCCEEECCSSCCSB-----CCSSC--CTTCCEEECCSSCCCBBCHHH-----------------------------
T ss_pred cCCCCCCEEECCCCcCCc-----cChhh--cccccEEECCCCcccccCHhH-----------------------------
Confidence 788999999999999884 33333 279999999999887533221
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh--HHHHHHH
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG--VEGLADL 248 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~ 248 (472)
+..++.|++|++++|.+...+ ...+
T Consensus 141 --------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 167 (330)
T 1xku_A 141 --------------------------------------------------FNGLNQMIVVELGTNPLKSSGIENGAF--- 167 (330)
T ss_dssp --------------------------------------------------HTTCTTCCEEECCSSCCCGGGBCTTGG---
T ss_pred --------------------------------------------------hcCCccccEEECCCCcCCccCcChhhc---
Confidence 223478999999999885422 1222
Q ss_pred HhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeC
Q psy3611 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEM 328 (472)
Q Consensus 249 l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l 328 (472)
..+++|++|++++|.++... ..+ .++|+.|++++|.+... .+..+..+++|++|++
T Consensus 168 ---~~l~~L~~L~l~~n~l~~l~---------------~~~--~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 168 ---QGMKKLSYIRIADTNITTIP---------------QGL--PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGL 223 (330)
T ss_dssp ---GGCTTCCEEECCSSCCCSCC---------------SSC--CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEEC
T ss_pred ---cCCCCcCEEECCCCccccCC---------------ccc--cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEEC
Confidence 24578999999999886321 111 26799999999998863 3456778899999999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH--hhcCCC
Q psy3611 329 PQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY--LTDNTT 406 (472)
Q Consensus 329 ~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~~~~~ 406 (472)
++|.++... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+++.+...+... ......
T Consensus 224 s~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 224 SFNSISAVD----NGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp CSSCCCEEC----TTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCCcCceeC----hhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 999987543 3467788999999999998873 34567788999999999999886432112110 012378
Q ss_pred CCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 407 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
++.+++++|.+....+ -+..+..++.++.+++++|+
T Consensus 295 l~~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSEEECCSSSSCGGGS--CGGGGTTCCCGGGEEC----
T ss_pred ccceEeecCccccccc--CccccccccceeEEEecccC
Confidence 8999999998865321 24567788899999999874
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=188.68 Aligned_cols=285 Identities=18% Similarity=0.193 Sum_probs=205.9
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
.|+.....+.+++.++. +|..+ .++|++|++++|.+... .+ ..+..+++|++|++++|.+++. .+
T Consensus 29 ~C~~~~~c~~~~~~l~~-----iP~~~--~~~L~~L~l~~n~i~~~--~~--~~~~~l~~L~~L~L~~n~l~~~----~~ 93 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS-----IPSGL--TEAVKSLDLSNNRITYI--SN--SDLQRCVNLQALVLTSNGINTI----EE 93 (353)
T ss_dssp EECTTSEEECCSTTCSS-----CCTTC--CTTCCEEECTTSCCCEE--CT--TTTTTCTTCCEEECTTSCCCEE----CT
T ss_pred CCCCCeEeeCCCCCccc-----ccccc--cccCcEEECCCCcCccc--CH--HHhccCCCCCEEECCCCccCcc----CH
Confidence 47777778888887774 55544 36899999999998532 22 4678899999999999999874 34
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcc
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDE 167 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~ 167 (472)
..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..-...
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~~--------------------------- 142 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNL----SSSWFKPLSSLTFLNLLGNPYKTLGET--------------------------- 142 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSC----CHHHHTTCTTCSEEECTTCCCSSSCSS---------------------------
T ss_pred hhcCCCCCCCEEECCCCcCCcC----CHhHhCCCccCCEEECCCCCCcccCch---------------------------
Confidence 5567789999999999999862 234467889999999999987531000
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCC-CChhhHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA-FGPIGVEGLA 246 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~ 246 (472)
..+..+++|++|++++|. ++......+
T Consensus 143 ---------------------------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~- 170 (353)
T 2z80_A 143 ---------------------------------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDF- 170 (353)
T ss_dssp ---------------------------------------------------CSCTTCTTCCEEEEEESSSCCEECTTTT-
T ss_pred ---------------------------------------------------hhhccCCCCcEEECCCCccccccCHHHc-
Confidence 012335788999998884 554433333
Q ss_pred HHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHH-HHhcCCCccE
Q psy3611 247 DLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA-VFKKLKTLER 325 (472)
Q Consensus 247 ~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~~~~L~~ 325 (472)
..+++|++|++++|.++... +..++.+++|+.|++++|.+.. ++. .+..+++|+.
T Consensus 171 -----~~l~~L~~L~l~~n~l~~~~--------------~~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 171 -----AGLTFLEELEIDASDLQSYE--------------PKSLKSIQNVSHLILHMKQHIL-----LLEIFVDVTSSVEC 226 (353)
T ss_dssp -----TTCCEEEEEEEEETTCCEEC--------------TTTTTTCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEE
T ss_pred -----cCCCCCCEEECCCCCcCccC--------------HHHHhccccCCeecCCCCcccc-----chhhhhhhcccccE
Confidence 23578999999998886432 2334557889999999998864 333 3446889999
Q ss_pred EeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH-hhcC
Q psy3611 326 VEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY-LTDN 404 (472)
Q Consensus 326 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~ 404 (472)
|++++|.++......+. .....+.++.++++++.+.+.+...+++.+..+++|+.|++++|.++. ++.. +..+
T Consensus 227 L~L~~n~l~~~~~~~l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~l 300 (353)
T 2z80_A 227 LELRDTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-----VPDGIFDRL 300 (353)
T ss_dssp EEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----CCTTTTTTC
T ss_pred EECCCCccccccccccc-cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-----cCHHHHhcC
Confidence 99999988754322222 223467788999999998877777788888889999999999998885 5544 4778
Q ss_pred CCCCEEECcCCCCCch
Q psy3611 405 TTLEDVNLTCNEISVQ 420 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~ 420 (472)
++|+.|++++|.+..+
T Consensus 301 ~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CCCCEEEeeCCCccCc
Confidence 9999999999987765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-22 Score=194.33 Aligned_cols=295 Identities=21% Similarity=0.225 Sum_probs=186.1
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
+++.++++++.+. .+| ..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++.. .+..+
T Consensus 34 ~l~~l~~~~~~l~---~ip--~~~--~~~l~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVP--KEI--SPDTTLLDLQNNDISEL----RKDDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCS---SCC--SCC--CTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCcc---ccC--CCC--CCCCeEEECCCCcCCcc----CHhHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 5777888777663 333 112 25778888888877753 234456677888888888877752 34566
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccc
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
..+++|++|++++|.+..- +.
T Consensus 99 ~~l~~L~~L~L~~n~l~~l-------------------------------~~---------------------------- 119 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEI-------------------------------PP---------------------------- 119 (332)
T ss_dssp TTCTTCCEEECCSSCCCSC-------------------------------CS----------------------------
T ss_pred hCcCCCCEEECCCCcCCcc-------------------------------Cc----------------------------
Confidence 7777888888887766420 00
Q ss_pred ccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH
Q psy3611 199 ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
...++|++|++++|.++......+ ..+++|++|++++|.++..+.
T Consensus 120 -----------------------~~~~~L~~L~l~~n~i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~------ 164 (332)
T 2ft3_A 120 -----------------------NLPSSLVELRIHDNRIRKVPKGVF------SGLRNMNCIEMGGNPLENSGF------ 164 (332)
T ss_dssp -----------------------SCCTTCCEEECCSSCCCCCCSGGG------SSCSSCCEEECCSCCCBGGGS------
T ss_pred -----------------------cccccCCEEECCCCccCccCHhHh------CCCccCCEEECCCCccccCCC------
Confidence 001477778887777754432222 235678888888877753221
Q ss_pred HHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q psy3611 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND 358 (472)
Q Consensus 279 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 358 (472)
.+..+..+ +|+.|++++|.+.. ++..+ .++|++|++++|.++... +..+..+++|++|++++
T Consensus 165 ------~~~~~~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 165 ------EPGAFDGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAIE----LEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp ------CTTSSCSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCBCCS
T ss_pred ------CcccccCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCccC----HHHhcCCCCCCEEECCC
Confidence 11222333 67888888887764 33221 267888888888877432 34566778888888888
Q ss_pred CCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHH--hcCCccc
Q psy3611 359 NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM--KNKTKLK 436 (472)
Q Consensus 359 n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~ 436 (472)
|.++.... ..+..+++|++|++++|.++. ++..+..+++|+.|++++|.++..+...+.... ...+.|+
T Consensus 227 N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 227 NQIRMIEN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCCCCCT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CcCCcCCh----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 88774221 356678888888888888874 666677788888888888888764321111100 1135688
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
.|++++|++..... ...++..++.|+.++++++
T Consensus 298 ~L~l~~N~~~~~~~--~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 298 GISLFNNPVPYWEV--QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSSSCGGGS--CGGGGTTBCCSTTEEC---
T ss_pred ceEeecCccccccc--Ccccccccchhhhhhcccc
Confidence 88888888763222 2245667888888888765
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=174.89 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=53.3
Q ss_pred cceeEEEcCCC-CCChhhHHHHHHHHhcCC-CccEEeCCCC--CCChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHH
Q psy3611 293 LALKVFIAGRN-RLENEGAKMLAAVFKKLK-TLERVEMPQN--GIYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAI 367 (472)
Q Consensus 293 ~~L~~L~l~~~-~l~~~~~~~l~~~~~~~~-~L~~L~l~~~--~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~ 367 (472)
++|+.|++++| .+++.+ ++..+..++ +|++|++++| .+++. .++..+..+++|++|++++|. +++.+.
T Consensus 168 ~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~- 240 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCF- 240 (336)
T ss_dssp TTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGG-
T ss_pred CCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHH-
Confidence 34555555555 444331 333444455 5555555555 34332 223334445555555555555 433222
Q ss_pred HHHHHhcCCCCCcEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh
Q psy3611 368 PLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 368 ~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 421 (472)
..+..+++|++|++++| .+.+.+. ..+..+++|+.|++++| +++.+
T Consensus 241 ---~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 241 ---QEFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp ---GGGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTC
T ss_pred ---HHHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHH
Confidence 23444555555555555 3333221 23344555555555555 44443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-22 Score=189.42 Aligned_cols=296 Identities=15% Similarity=0.178 Sum_probs=209.2
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+++.++++++.+.. +|..+ .++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+..+
T Consensus 34 ~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~l~~n~i~--~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-----VPKEI--SPDTTLLDLQNNDIS--ELRK--DDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSS-----CCSCC--CTTCCEEECCSSCCC--EECT--TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCccc-----cCCCC--CCCCeEEECCCCcCC--ccCH--hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 69999999998774 44443 478999999999985 3333 5688999999999999999874 35667
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
..+++|++|++++|.+.. ++..+. ++|++|++++|.+....+
T Consensus 99 ~~l~~L~~L~L~~n~l~~-----l~~~~~--~~L~~L~l~~n~i~~~~~------------------------------- 140 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-----IPPNLP--SSLVELRIHDNRIRKVPK------------------------------- 140 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-----CCSSCC--TTCCEEECCSSCCCCCCS-------------------------------
T ss_pred hCcCCCCEEECCCCcCCc-----cCcccc--ccCCEEECCCCccCccCH-------------------------------
Confidence 788999999999999884 343332 799999999998763210
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHh
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 250 (472)
..+..+++|++|++++|.++..+... ..
T Consensus 141 ------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~--~~-- 168 (332)
T 2ft3_A 141 ------------------------------------------------GVFSGLRNMNCIEMGGNPLENSGFEP--GA-- 168 (332)
T ss_dssp ------------------------------------------------GGGSSCSSCCEEECCSCCCBGGGSCT--TS--
T ss_pred ------------------------------------------------hHhCCCccCCEEECCCCccccCCCCc--cc--
Confidence 01234588999999999885422110 00
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
...+ +|++|++++|.++... ..+ .++|+.|++++|.+... .+..+..+++|+.|++++
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~---------------~~~--~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIP---------------KDL--PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCC---------------SSS--CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCS
T ss_pred ccCC-ccCEEECcCCCCCccC---------------ccc--cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCC
Confidence 1222 7889999998886421 111 25789999999988763 234567788999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHh--hcCCCCC
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL--TDNTTLE 408 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l--~~~~~L~ 408 (472)
|+++... +..+..+++|++|++++|.++. ++..+..+++|+.|++++|.+++.+...+.... .....|+
T Consensus 227 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 227 NQIRMIE----NGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCCCCC----TTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CcCCcCC----hhHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 9887432 3457788999999999998873 335577889999999999998864321111110 1136788
Q ss_pred EEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 409 DVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 409 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
.+++++|.+...++ .+.++..++.|+.+++++|+
T Consensus 298 ~L~l~~N~~~~~~~--~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 298 GISLFNNPVPYWEV--QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSSSCGGGS--CGGGGTTBCCSTTEEC----
T ss_pred ceEeecCccccccc--Ccccccccchhhhhhccccc
Confidence 99999998773221 35667788899999998874
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=172.94 Aligned_cols=253 Identities=15% Similarity=0.241 Sum_probs=184.8
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccC--CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKL--PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLV 115 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~--~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 115 (472)
..++.++++++.+.. ..+..+ ++++.|++++|.+++.. ..+..+++|++|++++|.+++. .++
T Consensus 47 ~~~~~l~l~~~~~~~-------~~~~~~~~~~l~~L~l~~n~l~~~~-----~~~~~~~~L~~L~L~~~~l~~~---~~~ 111 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRSFMDQPL-----AEHFSPFRVQHMDLSNSVIEVS---TLH 111 (336)
T ss_dssp TTSSEEECTTCBCCH-------HHHHHHHHTTCSEEECTTCEECSCC-----CSCCCCBCCCEEECTTCEECHH---HHH
T ss_pred hhheeeccccccCCH-------HHHHhhhhccceEEEcCCccccccc-----hhhccCCCCCEEEccCCCcCHH---HHH
Confidence 458889999887741 233444 68899999998887642 2245678899999999988753 366
Q ss_pred HHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCC
Q psy3611 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNH 195 (472)
Q Consensus 116 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (472)
..+..+++|++|++++|.+++..+..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~---------------------------------------------------- 139 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLA---------------------------------------------------- 139 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHT----------------------------------------------------
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHh----------------------------------------------------
Confidence 7778889999999999988765443222
Q ss_pred cccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCC-CCChhhHHHHHHHHhccCCCcceEEEeeCC-CCChhHHH
Q psy3611 196 SHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDN-AFGPIGVEGLADLLRSSCCFALEELKLNNN-GLGITGCK 273 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~-~i~~~~~~ 273 (472)
.+++|++|++++| .+++.+...+.. .+++|++|++++| .+++.+..
T Consensus 140 ---------------------------~~~~L~~L~L~~~~~l~~~~l~~~~~-----~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 140 ---------------------------KNSNLVRLNLSGCSGFSEFALQTLLS-----SCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp ---------------------------TCTTCSEEECTTCBSCCHHHHHHHHH-----HCTTCCEEECCCCTTCCHHHHH
T ss_pred ---------------------------cCCCCCEEECCCCCCCCHHHHHHHHh-----cCCCCCEEcCCCCCCcChHHHH
Confidence 2478999999998 677665554433 3578999999999 88876544
Q ss_pred HHHHHHHhhcccCcCCCCCc-ceeEEEcCCC--CCChhhHHHHHHHHhcCCCccEEeCCCCC-CChhHHHHHHHHHhcCC
Q psy3611 274 LLSKALHDCYESSKKEGSPL-ALKVFIAGRN--RLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENK 349 (472)
Q Consensus 274 ~l~~~l~~~~~~~~~~~~~~-~L~~L~l~~~--~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~ 349 (472)
.+.. . ++ +|+.|++++| .+.+. .++..+..+++|++|++++|. +++.+ ...+..++
T Consensus 188 ~~~~---~----------l~~~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~l~~l~ 247 (336)
T 2ast_B 188 VAVA---H----------VSETITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDC----FQEFFQLN 247 (336)
T ss_dssp HHHH---H----------SCTTCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGG----GGGGGGCT
T ss_pred HHHH---h----------cccCCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHH----HHHHhCCC
Confidence 4332 2 46 8999999999 56644 466677889999999999998 77654 34667889
Q ss_pred CccEEEccCC-CCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 350 NLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 350 ~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
+|++|++++| .+.+.+. ..+..+++|+.|++++| +++.+...+.. .++.|++++|.++..
T Consensus 248 ~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQINCSHFTTI 308 (336)
T ss_dssp TCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS-SCTTCHHHHHH------HSTTSEESCCCSCCT
T ss_pred CCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc-cCHHHHHHHHh------hCcceEEecccCccc
Confidence 9999999999 5555443 45677999999999999 77766544442 355566888888874
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-21 Score=202.89 Aligned_cols=430 Identities=19% Similarity=0.168 Sum_probs=243.5
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.++++|++|+|++|.|+.- .+.+|.++++|++|+|++|.+. +..+ .+|..+++|++|++++|.+++.
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i----~~~~f~~L~~L~~L~Ls~N~l~--~l~~--~~f~~L~~L~~L~Ls~N~l~~l-- 139 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQ--SLAL--GAFSGLSSLQKLVAVETNLASL-- 139 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCC--EECG--GGGTTCTTCCEEECTTSCCCCS--
T ss_pred HHHhCCCCCCEEECCCCcCCCc----ChhHhcCCCCCCEEEccCCcCC--CCCH--HHhcCCCCCCEEECCCCcCCCC--
Confidence 5789999999999999998852 2456889999999999999985 3333 5688999999999999999863
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhh---HHhhhccC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA---AALVLEDD 160 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l---~~L~~~~~ 160 (472)
-+..++.+++|++|++++|.+... .++..+..+++|++|++++|.+....+..+... ...+.. ..+..+..
T Consensus 140 --~~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L-~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 140 --ENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp --TTCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCCEEECTTCCC
T ss_pred --ChhhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcccCccccccccccccch-hhhhhhhhhhhcccCcc
Confidence 223467889999999999998753 245667788999999999998876554444332 211111 00111100
Q ss_pred CC-------------------CCCccccch-----hhhcc--cCCccccCCCccCCCCCCCcc-----------------
Q psy3611 161 EG-------------------ECSDEEQDE-----ESEEE--NDSDAEGDNSNLSHNDSNHSH----------------- 197 (472)
Q Consensus 161 ~~-------------------~~~~~i~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------- 197 (472)
.. .....+... ...+. ...........+.........
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 00 000000000 00000 000000000000000000000
Q ss_pred --ccc---ccccCCCCccc--ccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHH-------------HHHhccCCCcc
Q psy3611 198 --NAS---NQSHNNSNQSH--NTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA-------------DLLRSSCCFAL 257 (472)
Q Consensus 198 --~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-------------~~l~~~~~~~L 257 (472)
... .....+..... .........+.....++.|++.++.+.......+. .......+++|
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L 373 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred cccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence 000 00000000000 00000000111122333333333221110000000 00000123455
Q ss_pred eEEEeeCCCCChhHHHHHHH-HHHh----------hcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEE
Q psy3611 258 EELKLNNNGLGITGCKLLSK-ALHD----------CYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERV 326 (472)
Q Consensus 258 ~~L~l~~~~i~~~~~~~l~~-~l~~----------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L 326 (472)
+.|+++.|.+...+...... .+.. .......+..+++|+.+++..+..... .-...+..+.+++.+
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYL 450 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST---TSSCTTTTCTTCCEE
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc---ccccccccccccccc
Confidence 55555555543211100000 0000 001123445567888899887765432 012245678899999
Q ss_pred eCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCC
Q psy3611 327 EMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT 406 (472)
Q Consensus 327 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~ 406 (472)
+++.|.+.... +..+..++.++.|++++|.+.. +. .++.+..+++|+.|++++|.+.+. .+.++..+++
T Consensus 451 ~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~-~~--~~~~~~~l~~L~~L~Ls~N~L~~l----~~~~f~~l~~ 519 (635)
T 4g8a_A 451 DISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQE-NF--LPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSS 519 (635)
T ss_dssp ECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGG-GE--ECSCCTTCTTCCEEECTTSCCCEE----CTTTTTTCTT
T ss_pred ccccccccccc----ccccccchhhhhhhhhhccccc-cc--CchhhhhccccCEEECCCCccCCc----ChHHHcCCCC
Confidence 99999886432 4456678899999999997542 11 225677889999999999999874 4577888999
Q ss_pred CCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC-CceeEEecCCC
Q psy3611 407 LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF-GMAAALVLEDD 471 (472)
Q Consensus 407 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~~ 471 (472)
|+.|+|++|.|+.. .+..+..+++|++|++++|+++..... .+..+ ++|+.|++++|
T Consensus 520 L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 520 LQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCEEECTTSCCCBC----CCGGGTTCTTCCEEECTTSCCCBCCSS----CTTCCCTTCCEEECTTC
T ss_pred CCEEECCCCcCCCC----ChhHHhCCCCCCEEECCCCcCCCCCHH----HHHhhhCcCCEEEeeCC
Confidence 99999999999874 355678899999999999998764333 34445 57999999986
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=188.20 Aligned_cols=294 Identities=16% Similarity=0.129 Sum_probs=213.3
Q ss_pred hhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHH
Q psy3611 33 AFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL 112 (472)
Q Consensus 33 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 112 (472)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++. + ++.+++|++|++++|.++..
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~---~---~l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM---T---GIEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC---T---TGGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCC---
T ss_pred ChhHcCCCCEEEccCCCcccC---h---hhcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCcee---
Confidence 355678999999999998632 3 478899999999999999874 2 67789999999999999873
Q ss_pred HHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCC
Q psy3611 113 DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHND 192 (472)
Q Consensus 113 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (472)
+ +..+++|++|++++|.+.... +..++.|+.|.+....-. .
T Consensus 101 --~--~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~--------------------------~-- 141 (457)
T 3bz5_A 101 --D--VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLT--------------------------E-- 141 (457)
T ss_dssp --C--CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCS--------------------------C--
T ss_pred --e--cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccc--------------------------e--
Confidence 2 678899999999999887521 233455544433221100 0
Q ss_pred CCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCC-ChhhHHHHHHHHhccCCCcceEEEeeCCCCChhH
Q psy3611 193 SNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLRSSCCFALEELKLNNNGLGITG 271 (472)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~ 271 (472)
. .+..+++|++|++++|.. +... ...+++|++|++++|.++...
T Consensus 142 --------------------l------~l~~l~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 142 --------------------I------DVSHNTQLTELDCHLNKKITKLD---------VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp --------------------C------CCTTCTTCCEEECTTCSCCCCCC---------CTTCTTCCEEECCSSCCCCCC
T ss_pred --------------------e------ccccCCcCCEEECCCCCcccccc---------cccCCcCCEEECCCCccceec
Confidence 0 134568999999999954 4331 234678999999999987421
Q ss_pred HHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCc
Q psy3611 272 CKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNL 351 (472)
Q Consensus 272 ~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 351 (472)
++.+++|+.|++++|.+.+. .+..+++|+.|++++|+++. ++ +..+++|
T Consensus 187 -----------------l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L 235 (457)
T 3bz5_A 187 -----------------VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-----ID--VTPLTQL 235 (457)
T ss_dssp -----------------CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-----CC--CTTCTTC
T ss_pred -----------------cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-----cC--ccccCCC
Confidence 34578999999999999863 26678999999999999984 22 6688999
Q ss_pred cEEEccCCCCCcccHHHHHHHhcCCCCCcEEE----------cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchh
Q psy3611 352 RHLNLNDNTITYKGAIPLGQALSKLPSLAILN----------LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQG 421 (472)
Q Consensus 352 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~----------l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 421 (472)
+.|++++|.++... +..+++|+.|+ +++|.+.+. ++ ...+++|+.|++++|.....
T Consensus 236 ~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~----~~--~~~l~~L~~L~Ls~n~~l~~- 301 (457)
T 3bz5_A 236 TYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY----FQ--AEGCRKIKELDVTHNTQLYL- 301 (457)
T ss_dssp SEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCE----EE--CTTCTTCCCCCCTTCTTCCE-
T ss_pred CEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCc----cc--ccccccCCEEECCCCcccce-
Confidence 99999999988421 23455555554 444443322 22 34568999999999863221
Q ss_pred HHHHHH--------HHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 422 GLDLVK--------AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 422 ~~~l~~--------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++. .+..+++|++|++++|++++. -+..+++|+.|+++++
T Consensus 302 ---l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-------~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 302 ---LDCQAAGITELDLSQNPKLVYLYLNNTELTEL-------DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp ---EECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-------CCTTCTTCSEEECCSS
T ss_pred ---eccCCCcceEechhhcccCCEEECCCCccccc-------ccccCCcCcEEECCCC
Confidence 111 256788999999999999763 1667999999999886
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-22 Score=193.45 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=84.2
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+|+.|++++|.+.+. ++..+..+. |+.|++++|.+... .+..+..+++|+.|++++|.++... ..+
T Consensus 175 ~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~ 240 (313)
T 1ogq_A 175 LFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDL-----GKV 240 (313)
T ss_dssp TCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBG-----GGC
T ss_pred cCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeec-----Ccc
Confidence 566666666666542 344445554 77777777776532 2455666777888888887776211 225
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+... ++.. ..+++|+.+++++|+
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE----IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE----CCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCccccc----CCCC-ccccccChHHhcCCC
Confidence 5667788888888877643 566677778888888888877643 3443 566777777887776
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-21 Score=186.35 Aligned_cols=259 Identities=15% Similarity=0.213 Sum_probs=142.7
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
++..+++.+.+.. .+...+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++.. + +.
T Consensus 12 l~i~~ls~~~l~~----~~~~~~~~~~~L~~L~L~~n~l~--~~~~--~~~~~l~~L~~L~Ls~n~l~~~~----~--~~ 77 (317)
T 3o53_A 12 YKIEKVTDSSLKQ----ALASLRQSAWNVKELDLSGNPLS--QISA--ADLAPFTKLELLNLSSNVLYETL----D--LE 77 (317)
T ss_dssp EEEESCCTTTHHH----HHHHHHTTGGGCSEEECTTSCCC--CCCH--HHHTTCTTCCEEECTTSCCEEEE----E--ET
T ss_pred eeEeeccccchhh----hHHHHhccCCCCCEEECcCCccC--cCCH--HHhhCCCcCCEEECCCCcCCcch----h--hh
Confidence 4445555555443 34444556678888888888775 3333 46777788888888888776532 1 56
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccch
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE 171 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~ 171 (472)
.+++|++|++++|.++.. ...++|++|++++|.+.... .
T Consensus 78 ~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~-------------------------------~- 116 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVS-------------------------------C- 116 (317)
T ss_dssp TCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEE-------------------------------E-
T ss_pred hcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcC-------------------------------c-
Confidence 677888888888877642 13367788888777665310 0
Q ss_pred hhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhc
Q psy3611 172 ESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRS 251 (472)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 251 (472)
..++.|++|++++|.++......+.
T Consensus 117 --------------------------------------------------~~~~~L~~L~l~~N~l~~~~~~~~~----- 141 (317)
T 3o53_A 117 --------------------------------------------------SRGQGKKNIYLANNKITMLRDLDEG----- 141 (317)
T ss_dssp --------------------------------------------------CCCSSCEEEECCSSCCCSGGGBCTG-----
T ss_pred --------------------------------------------------cccCCCCEEECCCCCCCCccchhhh-----
Confidence 0125677777777777543322221
Q ss_pred cCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC
Q psy3611 252 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN 331 (472)
Q Consensus 252 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 331 (472)
.+++|++|++++|.++......+. ..+++|+.|++++|.+... + ....+++|++|++++|
T Consensus 142 -~l~~L~~L~Ls~N~l~~~~~~~~~-------------~~l~~L~~L~L~~N~l~~~-----~-~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 142 -CRSRVQYLDLKLNEIDTVNFAELA-------------ASSDTLEHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp -GGSSEEEEECTTSCCCEEEGGGGG-------------GGTTTCCEEECTTSCCCEE-----E-CCCCCTTCCEEECCSS
T ss_pred -ccCCCCEEECCCCCCCcccHHHHh-------------hccCcCCEEECCCCcCccc-----c-cccccccCCEEECCCC
Confidence 234677777777666543211110 1134566666666665532 1 1113455666666666
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q psy3611 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411 (472)
Q Consensus 332 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 411 (472)
+++.. +..+..+++|++|++++|.++. ++..+..+++|+.|++++|.+.... ++..+..++.|+.++
T Consensus 202 ~l~~l-----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~~~~~---~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 202 KLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCCBHHH---HHHHHHTCHHHHHHH
T ss_pred cCCcc-----hhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCccCcC---HHHHHhccccceEEE
Confidence 55522 2224455556666666665552 2233445555566666655555211 344444455555555
Q ss_pred Cc
Q psy3611 412 LT 413 (472)
Q Consensus 412 L~ 413 (472)
++
T Consensus 269 l~ 270 (317)
T 3o53_A 269 KQ 270 (317)
T ss_dssp HH
T ss_pred CC
Confidence 44
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-22 Score=200.22 Aligned_cols=156 Identities=24% Similarity=0.243 Sum_probs=92.9
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
++|++|++++|.+.... .+ ..+++|++|++++|.++... ..+++|+.|++++|.
T Consensus 215 ~~L~~L~l~~n~l~~lp--~~------~~l~~L~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP--EL------QNLPFLTTIYADNNLLKTLP------------------DLPPSLEALNVRDNY 268 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CC------TTCTTCCEEECCSSCCSSCC------------------SCCTTCCEEECCSSC
T ss_pred CcccEEECcCCcCCccc--cc------CCCCCCCEEECCCCcCCccc------------------ccccccCEEECCCCc
Confidence 35666666666654221 11 23456667777666664210 012467777777776
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC-CCCcEEE
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAILN 383 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~ 383 (472)
+.. ++. ..++|+.|++++|+++... . -.++|++|++++|.++. +... ++|+.|+
T Consensus 269 l~~-----l~~---~~~~L~~L~ls~N~l~~l~-----~---~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~ 323 (454)
T 1jl5_A 269 LTD-----LPE---LPQSLTFLDVSENIFSGLS-----E---LPPNLYYLNASSNEIRS---------LCDLPPSLEELN 323 (454)
T ss_dssp CSC-----CCC---CCTTCCEEECCSSCCSEES-----C---CCTTCCEEECCSSCCSE---------ECCCCTTCCEEE
T ss_pred ccc-----cCc---ccCcCCEEECcCCccCccc-----C---cCCcCCEEECcCCcCCc---------ccCCcCcCCEEE
Confidence 664 222 2356777777777766311 0 11467777777777662 1122 4788888
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
+++|.+.+ ++. .+++|+.|++++|.++. ++. .+++|++|++++|+++.
T Consensus 324 Ls~N~l~~-----lp~---~~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 324 VSNNKLIE-----LPA---LPPRLERLIASFNHLAE-----VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred CCCCcccc-----ccc---cCCcCCEEECCCCcccc-----ccc---hhhhccEEECCCCCCCc
Confidence 88887764 332 24778888888887775 344 45788888888887765
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-21 Score=186.65 Aligned_cols=260 Identities=18% Similarity=0.231 Sum_probs=170.7
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHh
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAM 118 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l 118 (472)
.++..+++.+.+. .... ..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. . +
T Consensus 11 ~l~i~~ls~~~l~--~~~~--~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~-~ 76 (317)
T 3o53_A 11 RYKIEKVTDSSLK--QALA--SLRQSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETL-----D-L 76 (317)
T ss_dssp EEEEESCCTTTHH--HHHH--HHHTTGGGCSEEECTTSCCCCC----CHHHHTTCTTCCEEECTTSCCEEEE-----E-E
T ss_pred ceeEeeccccchh--hhHH--HHhccCCCCCEEECcCCccCcC----CHHHhhCCCcCCEEECCCCcCCcch-----h-h
Confidence 4566667666652 2222 4566677899999999988874 3455677888999999999887531 1 6
Q ss_pred hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCccc
Q psy3611 119 KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHN 198 (472)
Q Consensus 119 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (472)
..+++|++|++++|.++..
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l------------------------------------------------------------- 95 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL------------------------------------------------------------- 95 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE-------------------------------------------------------------
T ss_pred hhcCCCCEEECcCCccccc-------------------------------------------------------------
Confidence 7788899999988876531
Q ss_pred ccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH
Q psy3611 199 ASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 278 (472)
...+.|++|++++|.++..... .+++|++|++++|.++.....
T Consensus 96 -----------------------~~~~~L~~L~l~~n~l~~~~~~---------~~~~L~~L~l~~N~l~~~~~~----- 138 (317)
T 3o53_A 96 -----------------------LVGPSIETLHAANNNISRVSCS---------RGQGKKNIYLANNKITMLRDL----- 138 (317)
T ss_dssp -----------------------EECTTCCEEECCSSCCSEEEEC---------CCSSCEEEECCSSCCCSGGGB-----
T ss_pred -----------------------cCCCCcCEEECCCCccCCcCcc---------ccCCCCEEECCCCCCCCccch-----
Confidence 0126888888888888654321 235788888888887643211
Q ss_pred HHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHH-hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEcc
Q psy3611 279 LHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVF-KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLN 357 (472)
Q Consensus 279 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~ 357 (472)
.++.+++|+.|++++|.+.... +..+ ..+++|++|++++|.++.. .....+++|++|+++
T Consensus 139 ---------~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 139 ---------DEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLS 199 (317)
T ss_dssp ---------CTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECC
T ss_pred ---------hhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCccc------ccccccccCCEEECC
Confidence 1233567888888888777531 2222 3567788888887777633 112236777777777
Q ss_pred CCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccE
Q psy3611 358 DNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 437 (472)
Q Consensus 358 ~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 437 (472)
+|.++.. +..+..+++|+.|++++|.++. ++..+..+++|+.|++++|.+... .++..+..++.|+.
T Consensus 200 ~N~l~~l-----~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 200 SNKLAFM-----GPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQT 266 (317)
T ss_dssp SSCCCEE-----CGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHH
T ss_pred CCcCCcc-----hhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceE
Confidence 7777632 1235566777777777777774 555566667777777777777632 25666666677776
Q ss_pred EEccC
Q psy3611 438 INVSE 442 (472)
Q Consensus 438 L~l~~ 442 (472)
+++.+
T Consensus 267 l~l~~ 271 (317)
T 3o53_A 267 VAKQT 271 (317)
T ss_dssp HHHHH
T ss_pred EECCC
Confidence 66653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-22 Score=193.26 Aligned_cols=251 Identities=20% Similarity=0.207 Sum_probs=171.7
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccC-ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~-~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
..+++|++++|.+.....++ ..+..+++|++|++++ |.+.+ .++..++.+++|++|++++|.++. .++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~--~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSG----AIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC--GGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEE----ECCG
T ss_pred ceEEEEECCCCCccCCcccC--hhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCC----cCCH
Confidence 46777888888775211445 5677788888888884 66665 255666777888888888887774 2556
Q ss_pred HhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCc
Q psy3611 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (472)
.+..+++|++|++++|.+.+..+.
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~-------------------------------------------------------- 143 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPP-------------------------------------------------------- 143 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCG--------------------------------------------------------
T ss_pred HHhCCCCCCEEeCCCCccCCcCCh--------------------------------------------------------
Confidence 677778888888888766532111
Q ss_pred ccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCC-cceEEEeeCCCCChhHHHHH
Q psy3611 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCF-ALEELKLNNNGLGITGCKLL 275 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~-~L~~L~l~~~~i~~~~~~~l 275 (472)
.+..+++|++|++++|.++......+. .++ +|++|++++|.++....
T Consensus 144 -----------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~------~l~~~L~~L~L~~N~l~~~~~--- 191 (313)
T 1ogq_A 144 -----------------------SISSLPNLVGITFDGNRISGAIPDSYG------SFSKLFTSMTISRNRLTGKIP--- 191 (313)
T ss_dssp -----------------------GGGGCTTCCEEECCSSCCEEECCGGGG------CCCTTCCEEECCSSEEEEECC---
T ss_pred -----------------------HHhcCCCCCeEECcCCcccCcCCHHHh------hhhhcCcEEECcCCeeeccCC---
Confidence 122347788888888887533333332 234 78888888887653211
Q ss_pred HHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEE
Q psy3611 276 SKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN 355 (472)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 355 (472)
..++.+. |+.|++++|.+.+. .+..+..+++|+.|++++|.++.. ...+..+++|++|+
T Consensus 192 -----------~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 192 -----------PTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLD 250 (313)
T ss_dssp -----------GGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEE
T ss_pred -----------hHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeee-----cCcccccCCCCEEE
Confidence 1122233 88888888887753 555677888999999999988632 12356778999999
Q ss_pred ccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC
Q psy3611 356 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE 416 (472)
Q Consensus 356 l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 416 (472)
+++|.++.. ++..+..+++|+.|++++|.+++. ++.. ..+++|+.+++++|.
T Consensus 251 Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 251 LRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE----IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE----CCCS-TTGGGSCGGGTCSSS
T ss_pred CcCCcccCc----CChHHhcCcCCCEEECcCCccccc----CCCC-ccccccChHHhcCCC
Confidence 999988732 336677889999999999988754 4443 566888999998886
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=152.60 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=132.0
Q ss_pred HHHHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC
Q psy3611 311 KMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389 (472)
Q Consensus 311 ~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 389 (472)
+.+...+..+++|++|++++| .+++.|+..+++++..+++|++|++++|.++++|+..+++.+...+.|++|++++|.|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 356777788889999999998 9999999899999988999999999999999888888888888888999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEC--cCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCcee
Q psy3611 390 KSAGASSIAKYLTDNTTLEDVNL--TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464 (472)
Q Consensus 390 ~~~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~ 464 (472)
++.|+..++.++..+++|+.|+| ++|.|+++|+..+...+..+++|++|++++|.++..+. +.++++.+..++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~~l~ 180 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDLV 180 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhHHHh
Confidence 99999889999999999999999 88999999999999999999999999999998877663 667776665543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=184.61 Aligned_cols=267 Identities=19% Similarity=0.213 Sum_probs=169.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
+++.|++++|.++. +|..+. ++|++|++++|.+. .++ . .+++|++|++++|.+++ ++.
T Consensus 41 ~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~l~---~lp--~---~l~~L~~L~Ls~N~l~~-----lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLT---SLP--A---LPPELRTLEVSGNQLTS-----LPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCCCS---CCC--C---CCTTCCEEEECSCCCSC-----CCC--
T ss_pred CCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCCCC---CCC--C---cCCCCCEEEcCCCcCCc-----CCC--
Confidence 46777777776663 344332 57777777777664 222 1 35677777777777664 222
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccc
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQD 170 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~ 170 (472)
.+++|++|++++|.++. ++. ..++|+.|++++|.++.- +.
T Consensus 99 -~l~~L~~L~Ls~N~l~~-----l~~---~l~~L~~L~L~~N~l~~l-------------------------------p~ 138 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTH-----LPA---LPSGLCKLWIFGNQLTSL-------------------------------PV 138 (622)
T ss_dssp -CCTTCCEEEECSCCCCC-----CCC---CCTTCCEEECCSSCCSCC-------------------------------CC
T ss_pred -CCCCCCEEECcCCcCCC-----CCC---CCCCcCEEECCCCCCCcC-------------------------------CC
Confidence 35677777777777664 222 346677777777665420 00
Q ss_pred hhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHh
Q psy3611 171 EESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250 (472)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 250 (472)
..++|++|++++|.++...
T Consensus 139 ----------------------------------------------------~l~~L~~L~Ls~N~l~~l~--------- 157 (622)
T 3g06_A 139 ----------------------------------------------------LPPGLQELSVSDNQLASLP--------- 157 (622)
T ss_dssp ----------------------------------------------------CCTTCCEEECCSSCCSCCC---------
T ss_pred ----------------------------------------------------CCCCCCEEECcCCcCCCcC---------
Confidence 1257788888888775422
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
...++|+.|++++|.++... ..+++|+.|++++|.+.. ++. ..++|+.|++++
T Consensus 158 -~~~~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 158 -ALPSELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYN 210 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCS
T ss_pred -CccCCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcC
Confidence 01246788888887775321 124678888888887764 222 246788888888
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 410 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 410 (472)
|.++.. +. ..++|++|++++|.++. . + ..+++|+.|++++|.++. ++. .+++|+.|
T Consensus 211 N~l~~l-----~~---~~~~L~~L~Ls~N~L~~--l---p---~~l~~L~~L~Ls~N~L~~-----lp~---~~~~L~~L 266 (622)
T 3g06_A 211 NRLTSL-----PA---LPSGLKELIVSGNRLTS--L---P---VLPSELKELMVSGNRLTS-----LPM---LPSGLLSL 266 (622)
T ss_dssp SCCSSC-----CC---CCTTCCEEECCSSCCSC--C---C---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEE
T ss_pred Cccccc-----CC---CCCCCCEEEccCCccCc--C---C---CCCCcCcEEECCCCCCCc-----CCc---ccccCcEE
Confidence 877632 21 24678888888887763 1 1 345778888888887774 333 45778888
Q ss_pred ECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 411 NLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 411 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
+|++|.++. ++..+..+++|+.|++++|++++.....+...
T Consensus 267 ~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 267 SVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred eCCCCCCCc-----CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 888888775 56677778888888888888876666555543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-20 Score=180.02 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=136.7
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
+++|++|++++|.++.. ...+..... ...++|++|++++|.++... +..++.+++|+.|++++|
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~-~~~~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQ-WLKPGLKVLSIAQAHSLNFS--------------CEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHT-TCCTTCCEEEEESCSCCCCC--------------TTTCCCCSSCCEEECCSC
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHH-hhcCCCcEEEeeCCCCccch--------------HHHhccCCCCCEEECCCC
Confidence 47888888888888655 334443321 12368999999999886432 133556788999999999
Q ss_pred CCChhhHHHHHHHH--hcCCCccEEeCCCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 304 RLENEGAKMLAAVF--KKLKTLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 304 ~l~~~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
.+.+. ..++..+ ..+++|++|++++|+++..+ .++ ..+..+++|++|++++|.++.... ...+..+++|+
T Consensus 184 ~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~ 256 (312)
T 1wwl_A 184 PELGE--RGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLN 256 (312)
T ss_dssp TTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCC
T ss_pred CcCcc--hHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCC
Confidence 87642 1244444 67889999999999998432 333 445678999999999999885320 02334568999
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
+|++++|.++. ++..+. ++|+.|++++|.++. ++. +..+++|++|++++|++++.
T Consensus 257 ~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~-----~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 257 SLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR-----NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS-----CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred EEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC-----Chh-HhhCCCCCEEeccCCCCCCC
Confidence 99999999984 555544 789999999999987 344 77889999999999998753
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-20 Score=187.23 Aligned_cols=324 Identities=20% Similarity=0.191 Sum_probs=162.8
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCC-------------CCcEEeccC
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP-------------SLAILNLGD 75 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-------------~L~~L~ls~ 75 (472)
.++|++|++++|.++ .+|..+.++++|++|++++|.+. +..| ..++.+. ++++|++++
T Consensus 10 ~~~L~~L~l~~n~l~-----~iP~~i~~L~~L~~L~l~~n~~~--~~~p--~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT-----EMPVEAENVKSKTEYYNAWSEWE--RNAP--PGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHH--HTSC--TTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccchhhhcccCchh-----hCChhHhcccchhhhhccCCccc--ccCC--cccccchhcchhhhhhhhccCCCEEEecC
Confidence 466777777777663 46777777777777777776553 2333 2333333 246677777
Q ss_pred ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHh
Q psy3611 76 CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 155 (472)
Q Consensus 76 ~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L 155 (472)
|.+++. +.. .++|++|++++|.++. ++. ..++|++|++++|.+..-. . ..+.++.|
T Consensus 81 ~~l~~l-----p~~---~~~L~~L~l~~n~l~~-----lp~---~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L 136 (454)
T 1jl5_A 81 LGLSSL-----PEL---PPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKALS-----D---LPPLLEYL 136 (454)
T ss_dssp SCCSCC-----CSC---CTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCCC-----S---CCTTCCEE
T ss_pred CccccC-----CCC---cCCCCEEEccCCcCCc-----ccc---ccCCCcEEECCCCccCccc-----C---CCCCCCEE
Confidence 766642 221 2566777777666664 221 1356666666666554310 0 00223333
Q ss_pred hhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCC
Q psy3611 156 VLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDN 235 (472)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 235 (472)
.+....-. .++. .....+++.++++. +.... .. ....+|++|++++|
T Consensus 137 ~L~~n~l~---~lp~-----------~~~l~~L~~L~l~~----------N~l~~--lp-------~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 137 GVSNNQLE---KLPE-----------LQNSSFLKIIDVDN----------NSLKK--LP-------DLPPSLEFIAAGNN 183 (454)
T ss_dssp ECCSSCCS---SCCC-----------CTTCTTCCEEECCS----------SCCSC--CC-------CCCTTCCEEECCSS
T ss_pred ECcCCCCC---CCcc-----------cCCCCCCCEEECCC----------CcCcc--cC-------CCcccccEEECcCC
Confidence 22211100 0110 01111111111110 00000 00 01147777777777
Q ss_pred CCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHH
Q psy3611 236 AFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAA 315 (472)
Q Consensus 236 ~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 315 (472)
.+.... .+ ..+++|++|++++|.++... ..+++|+.|++++|.+.. ++
T Consensus 184 ~l~~l~--~~------~~l~~L~~L~l~~N~l~~l~------------------~~~~~L~~L~l~~n~l~~-----lp- 231 (454)
T 1jl5_A 184 QLEELP--EL------QNLPFLTAIYADNNSLKKLP------------------DLPLSLESIVAGNNILEE-----LP- 231 (454)
T ss_dssp CCSSCC--CC------TTCTTCCEEECCSSCCSSCC------------------CCCTTCCEEECCSSCCSS-----CC-
T ss_pred cCCcCc--cc------cCCCCCCEEECCCCcCCcCC------------------CCcCcccEEECcCCcCCc-----cc-
Confidence 774432 11 34567778888777765211 012467888888887763 44
Q ss_pred HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHH
Q psy3611 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395 (472)
Q Consensus 316 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 395 (472)
.+..+++|+.|++++|+++.. +. ..++|++|++++|.+.. . +. ..++|+.|++++|.+.+
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~N~l~~--l---~~---~~~~L~~L~ls~N~l~~---- 291 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKTL-----PD---LPPSLEALNVRDNYLTD--L---PE---LPQSLTFLDVSENIFSG---- 291 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSC-----CS---CCTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCSSCCSE----
T ss_pred ccCCCCCCCEEECCCCcCCcc-----cc---cccccCEEECCCCcccc--c---Cc---ccCcCCEEECcCCccCc----
Confidence 256777888888888877631 21 23678888888887763 1 11 24678888888888775
Q ss_pred HHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcC-CcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 396 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 396 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++. ..++|+.|++++|.+.. ++ .. ++|++|++++|++++. .. ..++|+.|+++++
T Consensus 292 -l~~---~~~~L~~L~l~~N~l~~-----i~----~~~~~L~~L~Ls~N~l~~l-----p~---~~~~L~~L~L~~N 347 (454)
T 1jl5_A 292 -LSE---LPPNLYYLNASSNEIRS-----LC----DLPPSLEELNVSNNKLIEL-----PA---LPPRLERLIASFN 347 (454)
T ss_dssp -ESC---CCTTCCEEECCSSCCSE-----EC----CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSS
T ss_pred -ccC---cCCcCCEEECcCCcCCc-----cc----CCcCcCCEEECCCCccccc-----cc---cCCcCCEEECCCC
Confidence 211 12678888888888775 22 23 4888999999887641 11 1477888888876
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-20 Score=187.60 Aligned_cols=236 Identities=19% Similarity=0.226 Sum_probs=148.2
Q ss_pred CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHH
Q psy3611 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 145 (472)
Q Consensus 66 ~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 145 (472)
++|++|++++|.+++. .+..++.+++|++|+|++|.+++.. + +..+++|++|++++|.++.-
T Consensus 34 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l-------- 95 (487)
T 3oja_A 34 WNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQEL-------- 95 (487)
T ss_dssp GGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEE--------
T ss_pred CCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCC--------
Confidence 3788888888888763 3455667788888888888877521 1 66777888888888766421
Q ss_pred HHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCC
Q psy3611 146 MKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGA 225 (472)
Q Consensus 146 l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (472)
+ ..+
T Consensus 96 -----------------------~-----------------------------------------------------~~~ 99 (487)
T 3oja_A 96 -----------------------L-----------------------------------------------------VGP 99 (487)
T ss_dssp -----------------------E-----------------------------------------------------ECT
T ss_pred -----------------------C-----------------------------------------------------CCC
Confidence 0 125
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCC
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 305 (472)
.|++|++++|.++..... .+++|+.|++++|.++.... ..++.+++|+.|++++|.+
T Consensus 100 ~L~~L~L~~N~l~~~~~~---------~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---------RGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---------CCSSCEEEECCSSCCCSGGG--------------BCGGGGSSEEEEECTTSCC
T ss_pred CcCEEECcCCcCCCCCcc---------ccCCCCEEECCCCCCCCCCc--------------hhhcCCCCCCEEECCCCCC
Confidence 778888888877544321 23577888888877764321 1223356777777777777
Q ss_pred ChhhHHHHHHHHh-cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 306 ENEGAKMLAAVFK-KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 306 ~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
.+. .+..+. .+++|+.|++++|.++.. .....+++|++|++++|.++.. +..+..+++|+.|++
T Consensus 157 ~~~----~~~~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 157 DTV----NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISL 221 (487)
T ss_dssp CEE----EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEEC
T ss_pred CCc----ChHHHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEe
Confidence 653 233333 567777777777777632 1222466777777777777631 123556677777777
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEcc
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 441 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 441 (472)
++|.+++ ++..+..+++|+.|++++|.+... .++..+..++.|+.++++
T Consensus 222 s~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLVL-----IEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCCE-----ECTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHH
T ss_pred cCCcCcc-----cchhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecc
Confidence 7777764 455556667777777777766632 145556666666655553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-19 Score=172.06 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=54.1
Q ss_pred HhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 317 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
+..+++|++|++++|.++. ++..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+.+.
T Consensus 202 l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~---- 268 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLT---- 268 (328)
T ss_dssp GGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCB----
T ss_pred hcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhh----
Confidence 3444445555555544441 122344455555555555444321 123344455555555555544433
Q ss_pred HHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
++..+..+++|+.|+|++|.+... +|..+..+++|+.+++..+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSR----LPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCC----CCGGGGGSCTTCEEECCGGG
T ss_pred cchhhhcCCCCCEEeCCCCCchhh----ccHHHhhccCceEEeCCHHH
Confidence 444455555555666655544433 45555555555555555443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-20 Score=173.31 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=67.3
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
+.++.+++.++. +|..+ .++|++|++++|.+.. ++. ..+..+++|++|++++|.++..+ .++..+..
T Consensus 10 ~~l~c~~~~l~~-----ip~~~--~~~l~~L~L~~n~l~~---i~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLTS-----VPTGI--PSSATRLELESNKLQS---LPH-GVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCSS-----CCSCC--CTTCCEEECCSSCCCC---CCT-TTTTTCTTCSEEECCSSCCCEEE--EEEHHHHS
T ss_pred CEEEcCCCCccc-----CCCCC--CCCCCEEECCCCccCc---cCH-hHhhccccCCEEECCCCccCccc--Cccccccc
Confidence 466777666653 34332 3578888888887742 221 34677788888888888776432 11223345
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.
T Consensus 77 ~~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp CSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEE
T ss_pred ccccCEEECCCCcccc-----ChhhcCCCCCCCEEECCCCccc
Confidence 6788888888887764 3444566778888888777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=145.51 Aligned_cols=139 Identities=22% Similarity=0.173 Sum_probs=108.2
Q ss_pred cceeEEEcCCC-CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
++|++|++++| .+++.|+..+...+..+++|++|++++|.|++.|+..+++.+..+++|++|+|++|.++++|+..+++
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56777777777 77777777777777777788888888888888887788888888888888888888888878777888
Q ss_pred HhcCCCCCcEEEc--CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCC
Q psy3611 372 ALSKLPSLAILNL--GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT 433 (472)
Q Consensus 372 ~l~~~~~L~~L~l--~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 433 (472)
++..++.|++|++ ++|.+++.|+..+...+..+++|+.|+|++|.+++.|+ +...+..+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 8888888888888 77888888888888888888888888888888877663 555555443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-20 Score=179.13 Aligned_cols=262 Identities=16% Similarity=0.135 Sum_probs=166.0
Q ss_pred hcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh-------hcCCcccEEECcCCccC
Q psy3611 35 EENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL-------TDNTTLEDVNLTCNEIS 107 (472)
Q Consensus 35 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l-------~~~~~L~~L~l~~~~i~ 107 (472)
...++|++|++++|.+ .+| ..+... |++|++++|.++... ++..+ ..+++|++|++++|.++
T Consensus 40 ~~~~~L~~l~l~~n~l----~~p--~~~~~~--L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE----ADL--GQFTDI--IKSLSLKRLTVRAAR---IPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEECTTHHHHCCTT----CCC--HHHHHH--HHHCCCCEEEEEEEE---CBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred ccCCCceeEeeccccc----ccH--HHHHHH--HhhcccccccccCCC---cCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 3456788888887776 122 122222 677777777764321 11111 24678888888888887
Q ss_pred cchHHHHHHHh--hhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCC
Q psy3611 108 VQGGLDLVKAM--KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDN 185 (472)
Q Consensus 108 ~~~~~~l~~~l--~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 185 (472)
+. ++..+ ..+++|++|++++|.++.. +..+.....
T Consensus 109 ~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------------------------- 145 (312)
T 1wwl_A 109 GT----APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------------------------- 145 (312)
T ss_dssp SC----CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT--------------------------------------
T ss_pred ch----hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH--------------------------------------
Confidence 52 33333 6678888888888887654 333332100
Q ss_pred CccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCC
Q psy3611 186 SNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNN 265 (472)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~ 265 (472)
..+++|++|++++|.++......+ ..+++|++|++++|
T Consensus 146 ------------------------------------~~~~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 146 ------------------------------------WLKPGLKVLSIAQAHSLNFSCEQV------RVFPALSTLDLSDN 183 (312)
T ss_dssp ------------------------------------TCCTTCCEEEEESCSCCCCCTTTC------CCCSSCCEEECCSC
T ss_pred ------------------------------------hhcCCCcEEEeeCCCCccchHHHh------ccCCCCCEEECCCC
Confidence 012678888888888755543333 24568888888888
Q ss_pred CCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHH-HHHhcCCCccEEeCCCCCCChhHHHHHHHH
Q psy3611 266 GLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVGITALSDA 344 (472)
Q Consensus 266 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 344 (472)
++.... .+...+ .++.+++|+.|++++|.+...+ .++ ..+..+++|+.|++++|+++... ....
T Consensus 184 ~l~~~~--~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~ 248 (312)
T 1wwl_A 184 PELGER--GLISAL--------CPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAA---GAPS 248 (312)
T ss_dssp TTCHHH--HHHHHS--------CTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSC---CCSC
T ss_pred CcCcch--HHHHHH--------HhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCccc---chhh
Confidence 865321 111111 0134578888888888887421 233 34457789999999999887431 0123
Q ss_pred HhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 345 FEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 345 l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
+..+++|++|++++|.++. ++..+. ++|++|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~-----~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR-----NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS-----CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC-----Chh-HhhCCCCCEEeccCCCCCCC
Confidence 3456889999999998872 223333 789999999999886 333 67788999999999988763
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-20 Score=174.25 Aligned_cols=233 Identities=17% Similarity=0.166 Sum_probs=141.5
Q ss_pred CCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHH
Q psy3611 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 65 ~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
.+++++|++++|.++. ++..++.+++|++|++++|.+.. ++..+..+++|++|++++|.+.. .+.
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-lp~---- 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA-LPA---- 144 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC-CCG----
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc-CcH----
Confidence 3677777777777763 45556667777777777777763 45566677777777777776641 111
Q ss_pred HHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC
Q psy3611 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG 224 (472)
Q Consensus 145 ~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (472)
.+..+
T Consensus 145 ---------------------------------------------------------------------------~l~~l 149 (328)
T 4fcg_A 145 ---------------------------------------------------------------------------SIASL 149 (328)
T ss_dssp ---------------------------------------------------------------------------GGGGC
T ss_pred ---------------------------------------------------------------------------HHhcC
Confidence 02234
Q ss_pred CcccEEeCCCCCCChhhHHHHHHH---HhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADL---LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~---l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~ 301 (472)
++|++|++++|.+.......+... -....+++|++|++++|.++. ++..++.+++|+.|+++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---------------LPASIANLQNLKSLKIR 214 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---------------CCGGGGGCTTCCEEEEE
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---------------chHhhcCCCCCCEEEcc
Confidence 677777777765422211111000 000124577777777777651 11223445677777777
Q ss_pred CCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcE
Q psy3611 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 381 (472)
Q Consensus 302 ~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~ 381 (472)
+|.+.. ++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|.+... ++..+..+++|++
T Consensus 215 ~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 215 NSPLSA-----LGPAIHHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEK 281 (328)
T ss_dssp SSCCCC-----CCGGGGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCE
T ss_pred CCCCCc-----CchhhccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh----cchhhhcCCCCCE
Confidence 777764 44456677777777777776542 2344566677777777777765521 2345666777777
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 382 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 382 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
|++++|.+.+. +|..+..+++|+.+++..+.+..
T Consensus 282 L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 282 LDLRGCVNLSR----LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp EECTTCTTCCC----CCGGGGGSCTTCEEECCGGGSCC
T ss_pred EeCCCCCchhh----ccHHHhhccCceEEeCCHHHHHH
Confidence 77777766654 66677777777777777665543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-19 Score=181.50 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=46.4
Q ss_pred CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 37 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++.. + +..+++|++|++++|.+++. +
T Consensus 33 ~~~L~~L~Ls~n~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l-----~- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLS--QISA--ADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQEL-----L- 96 (487)
T ss_dssp GGGCCEEECCSSCCC--CCCG--GGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEE-----E-
T ss_pred CCCccEEEeeCCcCC--CCCH--HHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCC-----C-
Confidence 346666666666664 2222 44566666666666666665431 1 45566666666666666541 1
Q ss_pred HhhhCCCccEEEecCCcCC
Q psy3611 117 AMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~ 135 (472)
..++|++|++++|.++
T Consensus 97 ---~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 97 ---VGPSIETLHAANNNIS 112 (487)
T ss_dssp ---ECTTCCEEECCSSCCC
T ss_pred ---CCCCcCEEECcCCcCC
Confidence 2256666666666654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=177.88 Aligned_cols=257 Identities=19% Similarity=0.213 Sum_probs=198.9
Q ss_pred CCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHH
Q psy3611 37 NKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVK 116 (472)
Q Consensus 37 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 116 (472)
..++++|++++|.++ .+| ..+. ++|++|++++|.++. ++. .+++|++|++++|.++. ++.
T Consensus 39 ~~~l~~L~ls~n~L~---~lp--~~l~--~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~ 98 (622)
T 3g06_A 39 NNGNAVLNVGESGLT---TLP--DCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTS-----LPV 98 (622)
T ss_dssp HHCCCEEECCSSCCS---CCC--SCCC--TTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSCCCSC-----CCC
T ss_pred CCCCcEEEecCCCcC---ccC--hhhC--CCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCCcCCc-----CCC
Confidence 357999999999984 334 2233 799999999999985 333 46899999999999985 443
Q ss_pred HhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCc
Q psy3611 117 AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHS 196 (472)
Q Consensus 117 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (472)
..++|++|++++|.++.- +.
T Consensus 99 ---~l~~L~~L~Ls~N~l~~l------------~~--------------------------------------------- 118 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTHL------------PA--------------------------------------------- 118 (622)
T ss_dssp ---CCTTCCEEEECSCCCCCC------------CC---------------------------------------------
T ss_pred ---CCCCCCEEECcCCcCCCC------------CC---------------------------------------------
Confidence 578999999999987631 00
Q ss_pred ccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH
Q psy3611 197 HNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~ 276 (472)
.+++|++|++++|.++.... ..++|++|++++|.++...
T Consensus 119 --------------------------~l~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~l~----- 157 (622)
T 3g06_A 119 --------------------------LPSGLCKLWIFGNQLTSLPV----------LPPGLQELSVSDNQLASLP----- 157 (622)
T ss_dssp --------------------------CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSCCC-----
T ss_pred --------------------------CCCCcCEEECCCCCCCcCCC----------CCCCCCEEECcCCcCCCcC-----
Confidence 13789999999999865321 1368999999999986321
Q ss_pred HHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEc
Q psy3611 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 356 (472)
..+++|+.|++++|.+.. ++ ..+++|+.|++++|.++.. +. ..++|+.|++
T Consensus 158 -------------~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~l-----~~---~~~~L~~L~L 208 (622)
T 3g06_A 158 -------------ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLASL-----PT---LPSELYKLWA 208 (622)
T ss_dssp -------------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEEC
T ss_pred -------------CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCCC-----CC---ccchhhEEEC
Confidence 124689999999999985 44 4578999999999998732 21 3478999999
Q ss_pred cCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCccc
Q psy3611 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLK 436 (472)
Q Consensus 357 ~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 436 (472)
++|.++... ...++|+.|++++|.++. ++ ..+++|+.|++++|.|+. ++. .+++|+
T Consensus 209 ~~N~l~~l~--------~~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~-----lp~---~~~~L~ 264 (622)
T 3g06_A 209 YNNRLTSLP--------ALPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTS-----LPM---LPSGLL 264 (622)
T ss_dssp CSSCCSSCC--------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCC
T ss_pred cCCcccccC--------CCCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCc-----CCc---ccccCc
Confidence 999987311 235789999999999986 44 456899999999999986 454 678999
Q ss_pred EEEccCCCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 437 QINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 437 ~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
+|++++|+++. +...+..+++|+.|++++|.
T Consensus 265 ~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 265 SLSVYRNQLTR-----LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCCS-----CCGGGGGSCTTCEEECCSCC
T ss_pred EEeCCCCCCCc-----CCHHHhhccccCEEEecCCC
Confidence 99999999872 23457789999999999873
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-19 Score=175.87 Aligned_cols=246 Identities=20% Similarity=0.207 Sum_probs=142.5
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
.+.++..+..++. +|..+ .+++++|++++|.+... .+ ..|..+++|++|++++|.+++.. +..+.
T Consensus 45 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~--~~--~~~~~l~~L~~L~Ls~n~i~~i~----~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQII--KV--NSFKHLRHLEILQLSRNHIRTIE----IGAFN 109 (440)
T ss_dssp SCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEE--CT--TTTSSCSSCCEEECCSSCCCEEC----GGGGT
T ss_pred CCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCee--CH--HHhhCCCCCCEEECCCCcCCccC----hhhcc
Confidence 3455655555552 44333 25677777777776422 22 45677777777777777776532 24455
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccch
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDE 171 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~ 171 (472)
.+++|++|+|++|.++.. ....+..+++|++|++++|.+.....
T Consensus 110 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~-------------------------------- 153 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTI----PNGAFVYLSKLKELWLRNNPIESIPS-------------------------------- 153 (440)
T ss_dssp TCSSCCEEECCSSCCSSC----CTTTSCSCSSCCEEECCSCCCCEECT--------------------------------
T ss_pred CCccCCEEECCCCcCCee----CHhHhhccccCceeeCCCCcccccCH--------------------------------
Confidence 677777777777777642 12345667777777777776653110
Q ss_pred hhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCC-ChhhHHHHHHHHh
Q psy3611 172 ESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAF-GPIGVEGLADLLR 250 (472)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~ 250 (472)
..+..+++|++|+++++.. +......+
T Consensus 154 -----------------------------------------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~----- 181 (440)
T 3zyj_A 154 -----------------------------------------------YAFNRIPSLRRLDLGELKRLSYISEGAF----- 181 (440)
T ss_dssp -----------------------------------------------TTTTTCTTCCEEECCCCTTCCEECTTTT-----
T ss_pred -----------------------------------------------HHhhhCcccCEeCCCCCCCcceeCcchh-----
Confidence 0122346677777766432 32222112
Q ss_pred ccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCC
Q psy3611 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQ 330 (472)
Q Consensus 251 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~ 330 (472)
..+++|++|++++|.++.. +.+..+++|+.|++++|.+... .+..+..+++|++|++++
T Consensus 182 -~~l~~L~~L~L~~n~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 182 -EGLSNLRYLNLAMCNLREI----------------PNLTPLIKLDELDLSGNHLSAI----RPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp -TTCSSCCEEECTTSCCSSC----------------CCCTTCSSCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTT
T ss_pred -hcccccCeecCCCCcCccc----------------cccCCCcccCEEECCCCccCcc----ChhhhccCccCCEEECCC
Confidence 2345677777777766522 1234456677777777766642 234555666777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC
Q psy3611 331 NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389 (472)
Q Consensus 331 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 389 (472)
|+++... +..+.++++|+.|++++|.++.... +.+..+++|+.|++++|.+
T Consensus 241 n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 241 SQIQVIE----RNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCEEC----TTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCEEECCSSCE
T ss_pred CceeEEC----hhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCEEEcCCCCc
Confidence 7666432 3445566677777777776663221 3455566777777776654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-19 Score=176.56 Aligned_cols=245 Identities=19% Similarity=0.229 Sum_probs=133.7
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
..++..+..++. +|..+ .+++++|++++|.+.. ..+ ..|..+++|++|++++|.+++. .+..+..
T Consensus 57 ~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~--~~~--~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~ 121 (452)
T 3zyi_A 57 SKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQM--IQA--DTFRHLHHLEVLQLGRNSIRQI----EVGAFNG 121 (452)
T ss_dssp CEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCE--ECT--TTTTTCTTCCEEECCSSCCCEE----CTTTTTT
T ss_pred cEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCce--ECH--HHcCCCCCCCEEECCCCccCCc----ChhhccC
Confidence 455555554442 33322 2567777777776642 223 4566677777777777776653 2344555
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchh
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEE 172 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~ 172 (472)
+++|++|+|++|.++.. .+..+..+++|++|++++|.+.....
T Consensus 122 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------------- 164 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVI----PSGAFEYLSKLRELWLRNNPIESIPS--------------------------------- 164 (452)
T ss_dssp CTTCCEEECCSSCCSBC----CTTTSSSCTTCCEEECCSCCCCEECT---------------------------------
T ss_pred cccCCEEECCCCcCCcc----ChhhhcccCCCCEEECCCCCcceeCH---------------------------------
Confidence 67777777777776642 12334556677777777776542110
Q ss_pred hhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCC-CChhhHHHHHHHHhc
Q psy3611 173 SEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNA-FGPIGVEGLADLLRS 251 (472)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~ 251 (472)
..+..+++|++|+++++. +.......+
T Consensus 165 ----------------------------------------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~------ 192 (452)
T 3zyi_A 165 ----------------------------------------------YAFNRVPSLMRLDLGELKKLEYISEGAF------ 192 (452)
T ss_dssp ----------------------------------------------TTTTTCTTCCEEECCCCTTCCEECTTTT------
T ss_pred ----------------------------------------------hHHhcCCcccEEeCCCCCCccccChhhc------
Confidence 012234666666666633 232221111
Q ss_pred cCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC
Q psy3611 252 SCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN 331 (472)
Q Consensus 252 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 331 (472)
..+++|++|++++|.++.. +.+..+++|+.|++++|.+... .+..+..+++|+.|++++|
T Consensus 193 ~~l~~L~~L~L~~n~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM----------------PNLTPLVGLEELEMSGNHFPEI----RPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC----------------CCCTTCTTCCEEECTTSCCSEE----CGGGGTTCTTCCEEECTTS
T ss_pred cCCCCCCEEECCCCccccc----------------ccccccccccEEECcCCcCccc----CcccccCccCCCEEEeCCC
Confidence 2345666666666666422 1233455666666666666542 2345556666666666666
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCC
Q psy3611 332 GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 389 (472)
Q Consensus 332 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i 389 (472)
++.... +..+..+++|+.|++++|.++.... +.+..+++|+.|++++|.+
T Consensus 253 ~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 253 QVSLIE----RNAFDGLASLVELNLAHNNLSSLPH----DLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCCEEC----TTTTTTCTTCCEEECCSSCCSCCCT----TSSTTCTTCCEEECCSSCE
T ss_pred cCceEC----HHHhcCCCCCCEEECCCCcCCccCh----HHhccccCCCEEEccCCCc
Confidence 665332 3345556666666666666652111 3344566666666666654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-19 Score=171.40 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=89.2
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++... +..+..+++|++|++++|.+...+..+ ..+..+++|++|++++|.+.. ++..
T Consensus 28 ~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~i~~-----l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVIT-----MSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEEE--HHHHSCSCCCEEECCSCSEEE-----EEEE
T ss_pred CCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCcc--cccccccccCEEECCCCcccc-----Chhh
Confidence 58999999999988522 345788999999999999987655545 446678999999999999875 4455
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
+..+++|++|++++|.+..... ...+..+++|++|++++|.+..
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEE
T ss_pred cCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCc
Confidence 6778999999999999886311 1356778899999999887653
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-18 Score=169.73 Aligned_cols=230 Identities=18% Similarity=0.191 Sum_probs=174.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++++.|+|++|.+.... +..+..+++|++|++++|.+.. ..+ ..|..+++|++|++++|.++.. -+..
T Consensus 64 ~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~--i~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRT--IEI--GAFNGLANLNTLELFDNRLTTI----PNGA 131 (440)
T ss_dssp TTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCE--ECG--GGGTTCSSCCEEECCSSCCSSC----CTTT
T ss_pred CCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCc--cCh--hhccCCccCCEEECCCCcCCee----CHhH
Confidence 57999999999988633 5678899999999999999863 333 5688999999999999999863 2345
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
+..+++|++|++++|.+... ....+..+++|++|++++|...... +
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i------------------------------~ 177 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI------------------------------S 177 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE------------------------------C
T ss_pred hhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee------------------------------C
Confidence 67789999999999999852 2345678899999999985322110 0
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
...+..+++|++|++++|.++... .
T Consensus 178 ------------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~--~----- 202 (440)
T 3zyj_A 178 ------------------------------------------------EGAFEGLSNLRYLNLAMCNLREIP--N----- 202 (440)
T ss_dssp ------------------------------------------------TTTTTTCSSCCEEECTTSCCSSCC--C-----
T ss_pred ------------------------------------------------cchhhcccccCeecCCCCcCcccc--c-----
Confidence 011334589999999999986443 1
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
...+++|++|++++|.++... +..+..+++|+.|++++|.+... .+.++..+++|+.|+++
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIR--------------PGSFQGLMHLQKLWMIQSQIQVI----ERNAFDNLQSLVEINLA 263 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEECTTCCCCEE----CTTSSTTCTTCCEEECT
T ss_pred -cCCCcccCEEECCCCccCccC--------------hhhhccCccCCEEECCCCceeEE----ChhhhcCCCCCCEEECC
Confidence 235678999999999987432 22345578999999999999864 34466788999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 363 (472)
+|+++... ...+..+++|+.|++++|.+.-
T Consensus 264 ~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 264 HNNLTLLP----HDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSCCCCCC----TTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCccC----hhHhccccCCCEEEcCCCCccC
Confidence 99988432 3456778999999999998763
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=158.15 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=35.5
Q ss_pred cEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 69 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 69 ~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
++++.+++.++. ++.. ..++|++|++++|.++.. .+..+..+++|++|++++|.+..
T Consensus 14 ~~~~c~~~~l~~-----ip~~--~~~~l~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~l~~ 70 (285)
T 1ozn_A 14 VTTSCPQQGLQA-----VPVG--IPAASQRIFLHGNRISHV----PAASFRACRNLTILWLHSNVLAR 70 (285)
T ss_dssp CEEECCSSCCSS-----CCTT--CCTTCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCE
T ss_pred eEEEcCcCCccc-----CCcC--CCCCceEEEeeCCcCCcc----CHHHcccCCCCCEEECCCCccce
Confidence 467777776664 2321 235777777777777752 22345667777777777776653
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-18 Score=171.14 Aligned_cols=230 Identities=20% Similarity=0.162 Sum_probs=174.2
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
+++++|+|++|.+... .+..|..+++|++|++++|.+. +..+ ..+..+++|++|++++|.++.. .+..
T Consensus 75 ~~l~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~--~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI----QADTFRHLHHLEVLQLGRNSIR--QIEV--GAFNGLASLNTLELFDNWLTVI----PSGA 142 (452)
T ss_dssp TTCSEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCC--EECT--TTTTTCTTCCEEECCSSCCSBC----CTTT
T ss_pred CCccEEECcCCcCceE----CHHHcCCCCCCCEEECCCCccC--CcCh--hhccCcccCCEEECCCCcCCcc----Chhh
Confidence 5799999999998863 3667889999999999999986 3333 5688899999999999999863 2344
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCcccc
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQ 169 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~ 169 (472)
+..+++|++|++++|.+... ....+..+++|+.|++++|+..... +
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i------------------------------~ 188 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYI------------------------------S 188 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE------------------------------C
T ss_pred hcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCcccc------------------------------C
Confidence 67789999999999999852 2345678899999999985322110 0
Q ss_pred chhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHH
Q psy3611 170 DEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLL 249 (472)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l 249 (472)
...+..+++|++|++++|.++... .
T Consensus 189 ------------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~--~----- 213 (452)
T 3zyi_A 189 ------------------------------------------------EGAFEGLFNLKYLNLGMCNIKDMP--N----- 213 (452)
T ss_dssp ------------------------------------------------TTTTTTCTTCCEEECTTSCCSSCC--C-----
T ss_pred ------------------------------------------------hhhccCCCCCCEEECCCCcccccc--c-----
Confidence 011334589999999999986442 1
Q ss_pred hccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCC
Q psy3611 250 RSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMP 329 (472)
Q Consensus 250 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~ 329 (472)
...+++|++|++++|.++.... ..+..+++|+.|++++|.+... .+.++..+++|+.|+++
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEIRP--------------GSFHGLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLA 274 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEECG--------------GGGTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECC
T ss_pred -ccccccccEEECcCCcCcccCc--------------ccccCccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECC
Confidence 2356789999999999874322 2235578899999999999864 34567788999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCc
Q psy3611 330 QNGIYHVGITALSDAFEENKNLRHLNLNDNTITY 363 (472)
Q Consensus 330 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 363 (472)
+|+++... ...+..+++|+.|++++|.+.-
T Consensus 275 ~N~l~~~~----~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 275 HNNLSSLP----HDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SSCCSCCC----TTSSTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccC----hHHhccccCCCEEEccCCCcCC
Confidence 99987432 3456678999999999998763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-18 Score=163.95 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=127.7
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
++.|++|++++|.++......-.. ....+++|++|++++|.++... +..++.+++|+.|++++|
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~--------------~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAEL--QQWLKPGLKVLSIAQAHSPAFS--------------CEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHH--HTTBCSCCCEEEEECCSSCCCC--------------TTSCCCCTTCCEEECCSC
T ss_pred CCCCCEEEeecccccchhhhhHHH--HhhhccCCCEEEeeCCCcchhh--------------HHHhccCCCCCEEECCCC
Confidence 467778888888775422110001 1124568888888888875322 123455778889999988
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHH-HhcCCCccEEEccCCCCCcccHHHHHHHhcCC---CCC
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDA-FEENKNLRHLNLNDNTITYKGAIPLGQALSKL---PSL 379 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---~~L 379 (472)
.+...........+..+++|++|++++|+++..+ ..+.. +..+++|++|++++|.++... +..+..+ ++|
T Consensus 180 ~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L 253 (310)
T 4glp_A 180 PGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAALAAAGVQPHSLDLSHNSLRATV----NPSAPRCMWSSAL 253 (310)
T ss_dssp TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHHHHHTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTC
T ss_pred CCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHHHhcCCCCCEEECCCCCCCccc----hhhHHhccCcCcC
Confidence 8764311111122356789999999999987332 33333 467899999999999987431 1223333 689
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 380 AILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 380 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
++|++++|.++. ++..+. ++|+.|++++|.++. ++. +..+++|++|++++|++++.
T Consensus 254 ~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~-----~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 254 NSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR-----APQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS-----CCC-TTSCCCCSCEECSSTTTSCC
T ss_pred CEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC-----Cch-hhhCCCccEEECcCCCCCCC
Confidence 999999999984 555443 799999999999886 222 56788999999999998754
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=138.67 Aligned_cols=150 Identities=14% Similarity=0.179 Sum_probs=126.9
Q ss_pred HHHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCC
Q psy3611 312 MLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK 390 (472)
Q Consensus 312 ~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 390 (472)
.+...+...++|++|+++++ .|++.|+..++++++.+.+|++|+|++|.+++.|+..+++++...+.|++|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45666677889999999985 89999999999999999999999999999999898889999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCEEECcCC---CCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCce
Q psy3611 391 SAGASSIAKYLTDNTTLEDVNLTCN---EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 463 (472)
Q Consensus 391 ~~~~~~l~~~l~~~~~L~~L~L~~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L 463 (472)
+.|+..+..++..+++|+.|+|++| .+++.|+..+.++++.+++|++|+++.|.++. ...+.++++.++.+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 9999999999999999999999764 67888888899999999999999998776532 23577777766654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-18 Score=161.53 Aligned_cols=137 Identities=23% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHH-HhhcccCcCCCCCcceeEEEcCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL-HDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l-~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
+++|++|++++|.+.... .+........+++|++|++++|.++.... ....+ .. +++|++|++++
T Consensus 168 l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~~----------l~~L~~L~Ls~ 233 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGER--GLMAALCPHKFPAIQNLALRNTGMETPTG--VCAALAAA----------GVQPHSLDLSH 233 (310)
T ss_dssp CTTCCEEECCSCTTCHHH--HHHTTSCTTSSCCCCSCBCCSSCCCCHHH--HHHHHHHH----------TCCCSSEECTT
T ss_pred CCCCCEEECCCCCCccch--hhhHHHhhhcCCCCCEEECCCCCCCchHH--HHHHHHhc----------CCCCCEEECCC
Confidence 356666666666653221 11111111234566666666666652211 11111 11 34566666666
Q ss_pred CCCChhhHHHHHHHHhcC---CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCC
Q psy3611 303 NRLENEGAKMLAAVFKKL---KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSL 379 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~---~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 379 (472)
|.+.+. .|..+..+ ++|++|++++|+++. ++..+ .++|++|++++|.++. + ..+..+++|
T Consensus 234 N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l~~--~----~~~~~l~~L 296 (310)
T 4glp_A 234 NSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRLNR--A----PQPDELPEV 296 (310)
T ss_dssp SCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCCCS--C----CCTTSCCCC
T ss_pred CCCCcc----chhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcCCC--C----chhhhCCCc
Confidence 666542 12233333 577777777777762 23322 2577777777777763 2 123456777
Q ss_pred cEEEcCCCCCCh
Q psy3611 380 AILNLGDCLLKS 391 (472)
Q Consensus 380 ~~L~l~~~~i~~ 391 (472)
+.|++++|.+++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 777777777765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=155.86 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=67.1
Q ss_pred CcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 292 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++|+.|++++|.+... .+..+..+++|++|++++|+++... +..+..+++|++|++++|.++.... .
T Consensus 104 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~ 171 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSVPE----R 171 (285)
T ss_dssp CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEECT----T
T ss_pred CcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccC----HhHhccCCCccEEECCCCcccccCH----H
Confidence 45555555555555432 2233445555555555555554221 2234445555555555555542111 2
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
.+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCE
T ss_pred HhcCccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCCc
Confidence 344455555555555555542 234444555555555555555542 233445555555555555554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=135.61 Aligned_cols=132 Identities=11% Similarity=0.165 Sum_probs=125.1
Q ss_pred HHHHHHhcCCCccEEEccCC-CCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 340 ALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 340 ~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
.+...+...++|++|++++| .++++|+..+++++...+.|+.|+|++|.|++.|+..++.++..+++|+.|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 56777788999999999996 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCcccEEEccCC---CCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 419 VQGGLDLVKAMKNKTKLKQINVSEN---QFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 419 ~~~~~~l~~~l~~~~~L~~L~l~~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+.|+..+.+++..+++|++|++++| .+++.+...+.++++.+++|..|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 9999999999999999999999865 7899999999999999999999999875
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-16 Score=145.57 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=150.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.+++|++++|.++......+. .+++|++|++++|.++.... .+.+++|+.|++++|.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~----------------~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKLQV----------------DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEEEC----------------CSCCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccCHHHhh------cCCCCCEEECCCCccCcccC----------------CCCCCcCCEEECCCCc
Confidence 5889999999999665544442 45789999999999874321 1346789999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. ++..+..+++|+.|++++|+++... +..+.++++|++|++++|.++... +..+..+++|+.|++
T Consensus 89 l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 89 LQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSL 155 (290)
T ss_dssp CSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEEC
T ss_pred CCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccC----hhhcccccCCCEEEC
Confidence 874 5666778899999999999987432 356778899999999999988422 145677899999999
Q ss_pred CCCCCChHHHHHHH-HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh-hHHHHHHHHHHhCCc
Q psy3611 385 GDCLLKSAGASSIA-KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEMEKLMKSFGM 462 (472)
Q Consensus 385 ~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~l~~~~~ 462 (472)
++|.++. ++ ..+..+++|+.|++++|.+.. ++..+...+.|+.+++++|++.. -....+..+++.++.
T Consensus 156 ~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 156 ANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp TTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred CCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCcc
Confidence 9999986 43 345678999999999999986 67778788899999999999754 334556777777654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=142.05 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=131.1
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.+++|++|++++|.+..... + ..+++|++|++++|.++... .++.+++|+.|++++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~--~------~~l~~L~~L~L~~n~l~~~~----------------~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP--L------KNLTKITELELSGNPLKNVS----------------AIAGLQSIKTLDLTS 116 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--G------TTCCSCCEEECCSCCCSCCG----------------GGTTCTTCCEEECTT
T ss_pred ccCCCCEEEccCCcCCCChh--H------ccCCCCCEEEccCCcCCCch----------------hhcCCCCCCEEECCC
Confidence 35789999999998865443 2 35678999999999886531 134467899999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+.+. + .+..+++|++|++++|.++... .+..+++|+.|++++|.+++.. .+..+++|+.|
T Consensus 117 n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L 178 (308)
T 1h6u_A 117 TQITDV-----T-PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTL 178 (308)
T ss_dssp SCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEE
T ss_pred CCCCCc-----h-hhcCCCCCCEEECCCCccCcCc------cccCCCCccEEEccCCcCCCCh------hhcCCCCCCEE
Confidence 988762 2 2678889999999999887442 2778889999999999887421 26778899999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++++|.+.+. +. +..+++|+.|++++|.+... + .+..+++|++|++++|+++.
T Consensus 179 ~l~~n~l~~~-----~~-l~~l~~L~~L~L~~N~l~~~-----~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKISDI-----SP-LASLPNLIEVHLKNNQISDV-----S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCCCC-----GG-GGGCTTCCEEECTTSCCCBC-----G-GGTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccCcC-----hh-hcCCCCCCEEEccCCccCcc-----c-cccCCCCCCEEEccCCeeec
Confidence 9999988863 22 67788999999999998874 3 37788899999999888754
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-16 Score=146.47 Aligned_cols=189 Identities=18% Similarity=0.215 Sum_probs=153.7
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.++.|++|+++++.+.... .+ ..+++|++|++++|.+++... ++.+++|+.|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~------~~l~~L~~L~L~~n~i~~~~~----------------~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GV------QYLNNLIGLELKDNQITDLAP----------------LKNLTKITELELSG 94 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG----------------GTTCCSCCEEECCS
T ss_pred HcCCcCEEEeeCCCccCch--hh------hccCCCCEEEccCCcCCCChh----------------HccCCCCCEEEccC
Confidence 3579999999999986532 22 246799999999999875432 34478999999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+... + .+..+++|++|++++|+++... .+..+++|++|++++|.++.. ..+..+++|+.|
T Consensus 95 n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 156 (308)
T 1h6u_A 95 NPLKNV-----S-AIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYL 156 (308)
T ss_dssp CCCSCC-----G-GGTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEE
T ss_pred CcCCCc-----h-hhcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcC------ccccCCCCccEE
Confidence 999863 2 5778999999999999998532 378899999999999999842 227789999999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCc
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 462 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~ 462 (472)
++++|.+.+. +. +..+++|+.|++++|.+... +. +..+++|++|++++|++++.. .+..+++
T Consensus 157 ~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~L~~N~l~~~~------~l~~l~~ 218 (308)
T 1h6u_A 157 SIGNAQVSDL-----TP-LANLSKLTTLKADDNKISDI-----SP-LASLPNLIEVHLKNNQISDVS------PLANTSN 218 (308)
T ss_dssp ECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECTTSCCCBCG------GGTTCTT
T ss_pred EccCCcCCCC-----hh-hcCCCCCCEEECCCCccCcC-----hh-hcCCCCCCEEEccCCccCccc------cccCCCC
Confidence 9999999873 33 78889999999999999873 32 788999999999999998654 2677999
Q ss_pred eeEEecCCC
Q psy3611 463 AAALVLEDD 471 (472)
Q Consensus 463 L~~L~l~~~ 471 (472)
|+.|+++++
T Consensus 219 L~~L~l~~N 227 (308)
T 1h6u_A 219 LFIVTLTNQ 227 (308)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEccCC
Confidence 999999865
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-16 Score=146.30 Aligned_cols=208 Identities=20% Similarity=0.217 Sum_probs=122.7
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 117 (472)
++|++|++++|.+.... + ..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+... .+..
T Consensus 28 ~~l~~L~ls~n~l~~~~--~--~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG--S--YSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSL----ALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEEC--T--TTTTTCTTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEE----CTTT
T ss_pred CCccEEECCCCcccccC--H--hHhccccCCcEEECCCCcCCcc----CHHHccCCcCCCEEECCCCccCcc----Chhh
Confidence 46777777777764322 2 3466677777777777777653 223455667777777777777652 2345
Q ss_pred hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcc
Q psy3611 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSH 197 (472)
Q Consensus 118 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (472)
+..+++|++|++++|.+......
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------------------- 118 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENF--------------------------------------------------------- 118 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTC---------------------------------------------------------
T ss_pred hcCCccccEEECCCCCccccCch---------------------------------------------------------
Confidence 56677777777777766431000
Q ss_pred cccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhh-HHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHH
Q psy3611 198 NASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIG-VEGLADLLRSSCCFALEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~ 276 (472)
.+..+++|++|++++|.+.... ...+ ..+++|++|++++|.++......+.
T Consensus 119 ----------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 119 ----------------------PIGHLKTLKELNVAHNLIQSFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ----------------------CCTTCTTCCEEECCSSCCCCCCCCGGG------GGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ----------------------hcccCCCCCEEECcCCccceecCchhh------ccCCCCCEEECCCCCCCcCCHHHhh
Confidence 0123467777777777764422 1222 1245777777777777643322221
Q ss_pred HHHHhhcccCcCCCCCccee-EEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEE
Q psy3611 277 KALHDCYESSKKEGSPLALK-VFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN 355 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 355 (472)
.. .. ++.+. .|++++|.+.. ++.......+|+.|++++|+++... ...+..+++|++|+
T Consensus 171 ~l-~~----------L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 171 VL-HQ----------MPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSLQKIW 230 (276)
T ss_dssp HH-HT----------CTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSCCEEE
T ss_pred hh-hh----------ccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceeecC----HhHhcccccccEEE
Confidence 11 10 12222 67777777764 2223334457888888888776332 23456778888888
Q ss_pred ccCCCCC
Q psy3611 356 LNDNTIT 362 (472)
Q Consensus 356 l~~n~l~ 362 (472)
+++|.+.
T Consensus 231 l~~N~~~ 237 (276)
T 2z62_A 231 LHTNPWD 237 (276)
T ss_dssp CCSSCBC
T ss_pred ccCCccc
Confidence 8888776
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-16 Score=147.48 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=18.9
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
+|+.|++++|.++.. .+..+..+++|++|++++|++..
T Consensus 201 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 201 RLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEEEEECCSSCCSCC----CTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccEEECCCCceeec----CHhHhcccccccEEEccCCcccc
Confidence 455555555555542 12223445555555555555543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-16 Score=148.23 Aligned_cols=218 Identities=20% Similarity=0.135 Sum_probs=136.8
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHH
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 85 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~ 85 (472)
+.+++++++++++++.++. +|..+ .+++++|++++|.++ +..+ ..+..+++|++|++++|.+++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~N~l~--~~~~--~~~~~l~~L~~L~L~~n~l~~~~--- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-----LPPDL--PKDTTILHLSENLLY--TFSL--ATLMPYTRLTQLNLDRAELTKLQ--- 71 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-----CCSCC--CTTCCEEECTTSCCS--EEEG--GGGTTCTTCCEEECTTSCCCEEE---
T ss_pred ccccCCccEEECCCCCCCc-----CCCCC--CCCCCEEEcCCCcCC--ccCH--HHhhcCCCCCEEECCCCccCccc---
Confidence 4567788888888888774 44333 267888888888875 3333 56788888888888888887642
Q ss_pred HHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCC
Q psy3611 86 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECS 165 (472)
Q Consensus 86 l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~ 165 (472)
. .+.+++|++|++++|.+.. ++..+..+++|++|++++|.++...+
T Consensus 72 --~-~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~-------------------------- 117 (290)
T 1p9a_G 72 --V-DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPL-------------------------- 117 (290)
T ss_dssp --C-CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCS--------------------------
T ss_pred --C-CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCH--------------------------
Confidence 1 1567888888888888874 45556677888888888887753110
Q ss_pred ccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHH
Q psy3611 166 DEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGL 245 (472)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 245 (472)
..+..+++|++|++++|.++......+
T Consensus 118 -----------------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 118 -----------------------------------------------------GALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp -----------------------------------------------------STTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -----------------------------------------------------HHHcCCCCCCEEECCCCCCCccChhhc
Confidence 012334678888888887754432222
Q ss_pred HHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccE
Q psy3611 246 ADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLER 325 (472)
Q Consensus 246 ~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~ 325 (472)
..+++|+.|++++|+++.... ..+..+++|+.|++++|.+.. ++..+....+|+.
T Consensus 145 ------~~l~~L~~L~L~~N~l~~l~~--------------~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 145 ------TPTPKLEKLSLANNNLTELPA--------------GLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPF 199 (290)
T ss_dssp ------TTCTTCCEEECTTSCCSCCCT--------------TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSE
T ss_pred ------ccccCCCEEECCCCcCCccCH--------------HHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCe
Confidence 234577777777777652211 112334566777777766663 4555555566666
Q ss_pred EeCCCCCCChh-HHHHHHHHHhcCC
Q psy3611 326 VEMPQNGIYHV-GITALSDAFEENK 349 (472)
Q Consensus 326 L~l~~~~i~~~-~~~~l~~~l~~~~ 349 (472)
+++++|.+... ++..+..++...+
T Consensus 200 l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 200 AFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp EECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred EEeCCCCccCcCccHHHHHHHHhCc
Confidence 66666665421 2233444444433
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-15 Score=141.27 Aligned_cols=194 Identities=24% Similarity=0.255 Sum_probs=145.1
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.+++|++++|.++......+ ..+++|++|++++|.++.... ..+..+++|+.|++++|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~i~~--------------~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF------HRLTKLRLLYLNDNKLQTLPA--------------GIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS------SSCTTCCEEECCSSCCSCCCT--------------TTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHh------cCCCCCCEEECCCCccCeeCh--------------hhhcCCCCCCEEECCCCc
Confidence 679999999999865543333 346799999999999863221 113457899999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+... .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++.... ..+..+++|+.|++
T Consensus 97 l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 97 LQAL----PIGVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRL 164 (270)
T ss_dssp CCCC----CTTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred CCcC----CHhHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEe
Confidence 8863 2235677899999999999987543 3456789999999999999884321 44678899999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh--HHHHHHHHHH
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMK 458 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~ 458 (472)
++|.+... .+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|++... +...+.++++
T Consensus 165 ~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 165 YNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRV----PEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp CSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred cCCcCcEe----ChhHhccCCCcCEEECCCCcCCcC----CHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 99998863 234567789999999999998863 234577889999999999997543 2334444443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-15 Score=140.57 Aligned_cols=200 Identities=23% Similarity=0.263 Sum_probs=153.3
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
...+.++++++.++.... . ..+++++|++++|.++... ...++.+++|+.|++++|.
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~--------~~~~l~~L~l~~n~l~~~~--------------~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-N--------IPADTKKLDLQSNKLSSLP--------------SKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-C--------CCTTCSEEECCSSCCSCCC--------------TTSSSSCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCCCccCC-C--------CCCCCCEEECcCCCCCeeC--------------HHHhcCCCCCCEEECCCCc
Confidence 357789999998865421 1 1147999999999986332 1235667899999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+..- .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++.... ..+..+++|++|++
T Consensus 73 l~~i----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 73 LQTL----PAGIFKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSL 140 (270)
T ss_dssp CSCC----CTTTTSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred cCee----ChhhhcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEEC
Confidence 8752 2234567899999999999988432 3456788999999999999884322 45678999999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCcee
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~ 464 (472)
++|.+.+. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|+++.... ..+..+++|+
T Consensus 141 s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~ 208 (270)
T 2o6q_A 141 GYNELQSL----PKGVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLK 208 (270)
T ss_dssp CSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCC
T ss_pred CCCcCCcc----CHhHccCCcccceeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCC
Confidence 99999863 234467889999999999998874 23457788999999999999875332 3456689999
Q ss_pred EEecCCC
Q psy3611 465 ALVLEDD 471 (472)
Q Consensus 465 ~L~l~~~ 471 (472)
.|+++++
T Consensus 209 ~L~l~~N 215 (270)
T 2o6q_A 209 MLQLQEN 215 (270)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9999886
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-15 Score=136.21 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=141.0
Q ss_pred hcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcC
Q psy3611 222 KTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAG 301 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~ 301 (472)
..++.|++|+++++.+.... .+ ..+++|++|++++|.+++.. .++.+++|+.|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~--~l------~~l~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ--GI------QYLPNVRYLALGGNKLHDIS----------------ALKELTNLTYLILT 93 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT--TG------GGCTTCCEEECTTSCCCCCG----------------GGTTCTTCCEEECT
T ss_pred ccccceeeeeeCCCCccccc--cc------ccCCCCcEEECCCCCCCCch----------------hhcCCCCCCEEECC
Confidence 34589999999999985432 12 24579999999999987421 23457899999999
Q ss_pred CCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcE
Q psy3611 302 RNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 381 (472)
Q Consensus 302 ~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~ 381 (472)
+|.+... .+..+..+++|++|++++|+++... +..+..+++|++|++++|.++.... ..+..+++|+.
T Consensus 94 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 161 (272)
T 3rfs_A 94 GNQLQSL----PNGVFDKLTNLKELVLVENQLQSLP----DGVFDKLTNLTYLNLAHNQLQSLPK----GVFDKLTNLTE 161 (272)
T ss_dssp TSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred CCccCcc----ChhHhcCCcCCCEEECCCCcCCccC----HHHhccCCCCCEEECCCCccCccCH----HHhccCccCCE
Confidence 9999863 3334678899999999999987432 3456788999999999999884221 45678899999
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 382 LNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 382 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
|++++|.+++. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|++..
T Consensus 162 L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 162 LDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp EECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCcc----CHHHHhCCcCCCEEEccCCCccc
Confidence 99999999863 234567789999999999998874 34557889999999999998754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=133.73 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=142.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
...++++++++.++..... + .++++.|++++|.++.... ..++.+++|+.|++++|.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--------~~~l~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--------PADTEKLDLQSTGLATLSD--------------ATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--------CTTCCEEECTTSCCCCCCT--------------TTTTTCTTCCEEECTTSC
T ss_pred CCCeEEecCCCCccccCCC-C--------CCCCCEEEccCCCcCccCH--------------hHhcCcccCCEEECCCCc
Confidence 3567888888887544311 1 1479999999998864322 124456889999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+... .+..+..+++|+.|++++|+++... +..+..+++|++|++++|.++.... ..+..+++|+.|++
T Consensus 71 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L 138 (251)
T 3m19_A 71 LQTL----SAGVFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRL 138 (251)
T ss_dssp CCCC----CTTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred CCcc----CHhHhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEEC
Confidence 8863 3445678899999999999987432 3456788999999999998873221 34677899999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh--HHHHHHHHHHhC
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSF 460 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~ 460 (472)
++|.+++. .+..+..+++|+.|+|++|.+... .+..+..+++|++|++++|++... ....+..+++..
T Consensus 139 s~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 139 NTNQLQSI----PAGAFDKLTNLQTLSLSTNQLQSV----PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cCCcCCcc----CHHHcCcCcCCCEEECCCCcCCcc----CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 99998863 233677889999999999998863 234677889999999999998764 344566666544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-15 Score=135.77 Aligned_cols=196 Identities=18% Similarity=0.243 Sum_probs=147.8
Q ss_pred cccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCC
Q psy3611 226 RLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRL 305 (472)
Q Consensus 226 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l 305 (472)
.+..+++..+.+.+.. .... +++|+.|+++++.++... .++.+++|+.|++++|.+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~------l~~L~~L~l~~~~i~~~~----------------~l~~l~~L~~L~l~~n~l 75 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNE------LNSIDQIIANNSDIKSVQ----------------GIQYLPNVRYLALGGNKL 75 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHH------HTTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECTTSCC
T ss_pred HHHHHHhcCccccccc--cccc------ccceeeeeeCCCCccccc----------------ccccCCCCcEEECCCCCC
Confidence 4445556565553322 1222 258999999999986432 123468999999999999
Q ss_pred ChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcC
Q psy3611 306 ENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLG 385 (472)
Q Consensus 306 ~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~ 385 (472)
.+. ..+..+++|++|++++|.++... +..+..+++|++|++++|.++... +..+..+++|++|+++
T Consensus 76 ~~~------~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 76 HDI------SALKELTNLTYLILTGNQLQSLP----NGVFDKLTNLKELVLVENQLQSLP----DGVFDKLTNLTYLNLA 141 (272)
T ss_dssp CCC------GGGTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECC
T ss_pred CCc------hhhcCCCCCCEEECCCCccCccC----hhHhcCCcCCCEEECCCCcCCccC----HHHhccCCCCCEEECC
Confidence 862 25678999999999999988432 345678999999999999988422 1456788999999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeE
Q psy3611 386 DCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 465 (472)
Q Consensus 386 ~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~ 465 (472)
+|.+++. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|+++.... ..+..+++|+.
T Consensus 142 ~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~ 209 (272)
T 3rfs_A 142 HNQLQSL----PKGVFDKLTNLTELDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQY 209 (272)
T ss_dssp SSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCE
T ss_pred CCccCcc----CHHHhccCccCCEEECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCE
Confidence 9999863 234567889999999999999873 24456788999999999999875332 34567899999
Q ss_pred EecCCC
Q psy3611 466 LVLEDD 471 (472)
Q Consensus 466 L~l~~~ 471 (472)
|+++++
T Consensus 210 L~l~~N 215 (272)
T 3rfs_A 210 IWLHDN 215 (272)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 999886
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-14 Score=134.50 Aligned_cols=143 Identities=24% Similarity=0.340 Sum_probs=74.9
Q ss_pred CcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 292 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++|+.|++++|.+.+. +. +..+++|+.|++++|.++.. ..+..+++|++|++++|.++.. .
T Consensus 67 l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~i~~~------~ 128 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISDI------N 128 (291)
T ss_dssp CTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCG------GGGTTCTTCCEEECTTSCCCCC------G
T ss_pred CCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCCC------hhhccCCCCCEEECCCCcCCCC------h
Confidence 34566666666655542 21 44555666666666655531 1244555666666666655521 2
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+++.
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~N~l~~~-----~~-l~~l~~L~~L~L~~N~i~~l--- 193 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLSLEDNQISDI-----VP-LAGLTKLQNLYLSKNHISDL--- 193 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCBC---
T ss_pred hhcCCCCCCEEEccCCcCCc-----c-hhhccCCCCCEEEccCCccccc-----hh-hcCCCccCEEECCCCcCCCC---
Confidence 34455556666666665554 2 3345555666666666655542 22 55555666666666655432
Q ss_pred HHHHHHHhCCceeEEecCC
Q psy3611 452 EMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 452 ~l~~~l~~~~~L~~L~l~~ 470 (472)
..+..+++|+.|++++
T Consensus 194 ---~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 194 ---RALAGLKNLDVLELFS 209 (291)
T ss_dssp ---GGGTTCTTCSEEEEEE
T ss_pred ---hhhccCCCCCEEECcC
Confidence 1244455566665554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-14 Score=127.75 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=110.7
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
++|++|++++|.+++.. .+..+++|+.|++++|.+... ..+..+++|++|++++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~----------------~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT----------------GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HTCCEEEEESSCCSCCT----------------TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCB
T ss_pred CCccEEeccCCCccChH----------------HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccC
Confidence 47889999988886322 122357889999998877642 25667888999999998887
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCC-CChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
... +..+..+++|++|++++|.+++.+. ..+..+++|++|++++|. +++ ++ .+..+++|+.|+++
T Consensus 102 ~~~----~~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 102 SDK----IPNLSGLTSLTLLDISHSAHDDSIL----TKINTLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp GGG----SCCCTTCTTCCEEECCSSBCBGGGH----HHHTTCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECT
T ss_pred ccc----ChhhcCCCCCCEEEecCCccCcHhH----HHHhhCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECC
Confidence 533 3456678889999999988875332 566788889999999887 665 33 56778889999999
Q ss_pred CCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 414 CNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 414 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
+|.+.+ ++ .+..+++|++|++++|+|++
T Consensus 168 ~n~i~~-----~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 168 FDGVHD-----YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCC-----CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCcC-----hH-HhccCCCCCEEEeeCcccCC
Confidence 888887 33 67788889999999888753
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=126.57 Aligned_cols=148 Identities=15% Similarity=0.211 Sum_probs=123.7
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.++..+. ..
T Consensus 44 ~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PN 107 (197)
T ss_dssp HTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CC
T ss_pred CCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hh
Confidence 579999999999985 44 477899999999999987643 367789999999999999985322 56
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC-CCchhHHHHHHHHhcCCcccEEEccCCCCChhHHH
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVE 451 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 451 (472)
+..+++|++|++++|.+++. .+..+..+++|+.|++++|. +++ ++ .+..+++|++|++++|++++..
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred hcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcChH--
Confidence 77899999999999999975 45667889999999999997 877 34 6889999999999999997632
Q ss_pred HHHHHHHhCCceeEEecCCCC
Q psy3611 452 EMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 452 ~l~~~l~~~~~L~~L~l~~~~ 472 (472)
.+..+++|+.|+++++.
T Consensus 176 ----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 ----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ----TGGGCSSCCEEEECBC-
T ss_pred ----HhccCCCCCEEEeeCcc
Confidence 56779999999999873
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-14 Score=133.77 Aligned_cols=171 Identities=23% Similarity=0.283 Sum_probs=138.6
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.++.|++|++++|.+.... .+ ..+++|++|++++|.+++... +..+++|+.|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~------~~l~~L~~L~L~~n~l~~~~~----------------l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GI------QYLPNVTKLFLNGNKLTDIKP----------------LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG----------------GTTCTTCCEEECCS
T ss_pred hcCcccEEEccCCCcccCh--hH------hcCCCCCEEEccCCccCCCcc----------------cccCCCCCEEECCC
Confidence 4578999999999985442 12 245799999999999875321 34468999999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+.+ ++ .+..+++|++|++++|+++.. ..+..+++|+.|++++|.++.. ..+..+++|+.|
T Consensus 100 n~l~~-----~~-~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 161 (291)
T 1h6t_A 100 NKVKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTL 161 (291)
T ss_dssp SCCCC-----GG-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred CcCCC-----Ch-hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEE
Confidence 99986 33 377899999999999999843 3577899999999999999842 467789999999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
++++|.+.+. +. +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 162 ~L~~N~l~~~-----~~-l~~l~~L~~L~L~~N~i~~-----l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 162 SLEDNQISDI-----VP-LAGLTKLQNLYLSKNHISD-----LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCB-----CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EccCCccccc-----hh-hcCCCccCEEECCCCcCCC-----Ch-hhccCCCCCEEECcCCcccC
Confidence 9999999873 22 7788999999999999987 33 47889999999999998754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-14 Score=129.99 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=137.8
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
+..++++++++.++.. +..+ +++++.|++++|.+... .+..+..+++|++|++++|.++
T Consensus 14 ~~~~~l~~~~~~l~~~---------------p~~~--~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV---------------PSGI--PADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSC---------------CSCC--CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCcccc---------------CCCC--CCCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCC
Confidence 3578899998887522 1112 25799999999999863 3346778999999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~ 414 (472)
... +..+..+++|++|++++|.++... +..+..+++|++|++++|.++.. .+..+..+++|+.|++++
T Consensus 73 ~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 73 TLS----AGVFDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKSL----PSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCS
T ss_pred ccC----HhHhccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCCc----ChhHhccCCcccEEECcC
Confidence 532 455778999999999999998422 14567889999999999999863 234467789999999999
Q ss_pred CCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 415 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
|.++.. .+..+..+++|++|++++|+++.... ..+..+++|+.|++++|
T Consensus 141 N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 141 NQLQSI----PAGAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp SCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSC
T ss_pred CcCCcc----CHHHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCC
Confidence 999873 23367889999999999999875432 34566899999999987
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=142.09 Aligned_cols=168 Identities=23% Similarity=0.276 Sum_probs=86.3
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.+. ..-....+++|+.|+|++|.++.... ++.+++|+.|++++|.
T Consensus 43 ~~L~~L~l~~n~i~--------~l~~l~~l~~L~~L~Ls~N~l~~~~~----------------l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 43 NSIDQIIANNSDIK--------SVQGIQYLPNVTKLFLNGNKLTDIKP----------------LTNLKNLGWLFLDENK 98 (605)
T ss_dssp TTCCCCBCTTCCCC--------CCTTGGGCTTCCEEECTTSCCCCCGG----------------GGGCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCC--------CChHHccCCCCCEEEeeCCCCCCChh----------------hccCCCCCEEECcCCC
Confidence 55666666655541 11122334556666666665543211 1224556666666665
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. ++ .+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+... ..+..+++|+.|+|
T Consensus 99 l~~-----l~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 99 IKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSL 160 (605)
T ss_dssp CCC-----CT-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEEC
T ss_pred CCC-----Ch-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEEC
Confidence 553 11 344555666666666655531 2344555666666666655521 34455556666666
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++|.+.+. +. +..+++|+.|+|++|.|.. + ..+..+++|+.|++++|++.
T Consensus 161 s~N~l~~~-----~~-l~~l~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDI-----VP-LAGLTKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCC-----GG-GTTCTTCCEEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEE
T ss_pred cCCcCCCc-----hh-hccCCCCCEEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCc
Confidence 66655542 11 4555666666666665554 2 23555556666666665543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-14 Score=131.76 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=146.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCC-CChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC-
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNG-LGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR- 302 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~- 302 (472)
+.+++|++++|.++......+ ..+++|++|++++|. ++.... ..+..+++|+.|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~------~~l~~L~~L~l~~n~~l~~i~~--------------~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF------SNLPNISRIYVSIDVTLQQLES--------------HSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT------TTCTTCCEEEEECCSSCCEECT--------------TTEESCTTCCEEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHc------cCCCCCcEEeCCCCCCcceeCH--------------hHcCCCcCCcEEECCCC
Confidence 589999999999976544333 246799999999997 753221 1234578999999998
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCcc---EEEccCC-CCCcccHHHHHHHhcCCCC
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLR---HLNLNDN-TITYKGAIPLGQALSKLPS 378 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~---~L~l~~n-~l~~~~~~~l~~~l~~~~~ 378 (472)
|.+... -+.++..+++|++|++++|+++. ++. +..+++|+ +|++++| .++.... ..+..+++
T Consensus 91 n~l~~i----~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~ 156 (239)
T 2xwt_C 91 RNLTYI----DPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCN 156 (239)
T ss_dssp TTCCEE----CTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBS
T ss_pred CCeeEc----CHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCc----ccccchhc
Confidence 888852 22356778999999999999874 233 66778888 9999999 8874221 45778899
Q ss_pred Cc-EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCC-CCchhHHHHHHHHhcC-CcccEEEccCCCCChhHHHHHHH
Q psy3611 379 LA-ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNE-ISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEK 455 (472)
Q Consensus 379 L~-~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~ 455 (472)
|+ .|++++|.+.. ++......++|+.|++++|. ++.. -+..+..+ ++|++|++++|+++.....
T Consensus 157 L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~l~~~---- 223 (239)
T 2xwt_C 157 ETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTALPSK---- 223 (239)
T ss_dssp SEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCCCCCT----
T ss_pred ceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCccccCChh----
Confidence 99 99999999985 44332233789999999994 8763 13456778 8999999999998643211
Q ss_pred HHHhCCceeEEecCCC
Q psy3611 456 LMKSFGMAAALVLEDD 471 (472)
Q Consensus 456 ~l~~~~~L~~L~l~~~ 471 (472)
..++|+.|++++.
T Consensus 224 ---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 ---GLEHLKELIARNT 236 (239)
T ss_dssp ---TCTTCSEEECTTC
T ss_pred ---HhccCceeeccCc
Confidence 4778888888764
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-14 Score=131.68 Aligned_cols=170 Identities=21% Similarity=0.255 Sum_probs=129.4
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
+..+..++++++.+++.. .+.. +++|++|++++|.++... .+..+++|+.|++++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~------l~~L~~L~l~~n~i~~l~----------------~l~~l~~L~~L~L~~N 73 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKE------LSGVQNFNGDNSNIQSLA----------------GMQFFTNLKELHLSHN 73 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHH------HTTCSEEECTTSCCCCCT----------------TGGGCTTCCEEECCSS
T ss_pred HHHHHHHHhcCCCccccc--chhh------cCcCcEEECcCCCcccch----------------HHhhCCCCCEEECCCC
Confidence 356777888888886544 2333 258999999999887432 1233578999999999
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+.+. +. +..+++|+.|++++|+++... .+.. ++|++|++++|.++. . ..+..+++|+.|+
T Consensus 74 ~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~------~~~~-~~L~~L~L~~N~l~~--~----~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 74 QISDL-----SP-LKDLTKLEELSVNRNRLKNLN------GIPS-ACLSRLFLDNNELRD--T----DSLIHLKNLEILS 134 (263)
T ss_dssp CCCCC-----GG-GTTCSSCCEEECCSSCCSCCT------TCCC-SSCCEEECCSSCCSB--S----GGGTTCTTCCEEE
T ss_pred ccCCC-----hh-hccCCCCCEEECCCCccCCcC------cccc-CcccEEEccCCccCC--C----hhhcCcccccEEE
Confidence 98863 33 778899999999999987431 1223 789999999999884 2 3577889999999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE 448 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 448 (472)
+++|.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|+++..
T Consensus 135 Ls~N~i~~-----~~-~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 135 IRNNKLKS-----IV-MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCB-----CG-GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCCC-----Ch-HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 99999987 32 577889999999999999873 5677888999999999987543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-14 Score=131.76 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=122.8
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcc-ccchhHHHHHHHhhcCCcccEEECcC-CccCcchHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTC-NEISVQGGLDLV 115 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~-l~~~~~~~l~~~l~~~~~L~~L~l~~-~~i~~~~~~~l~ 115 (472)
++|++|++++|.+... .+ ..+..+++|++|++++|. ++... +..+..+++|++|++++ |.++.. -+
T Consensus 31 ~~l~~L~l~~n~l~~i--~~--~~~~~l~~L~~L~l~~n~~l~~i~----~~~f~~l~~L~~L~l~~~n~l~~i----~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI--PS--HAFSNLPNISRIYVSIDVTLQQLE----SHSFYNLSKVTHIEIRNTRNLTYI----DP 98 (239)
T ss_dssp TTCCEEEEESCCCSEE--CT--TTTTTCTTCCEEEEECCSSCCEEC----TTTEESCTTCCEEEEEEETTCCEE----CT
T ss_pred CcccEEEEeCCcceEE--CH--HHccCCCCCcEEeCCCCCCcceeC----HhHcCCCcCCcEEECCCCCCeeEc----CH
Confidence 3788888888877422 22 356777888888888886 66531 23456677888888887 777642 12
Q ss_pred HHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCC
Q psy3611 116 KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNH 195 (472)
Q Consensus 116 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (472)
..+..+++|++|++++|.+..- +.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~l-p~------------------------------------------------------- 122 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMF-PD------------------------------------------------------- 122 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSC-CC-------------------------------------------------------
T ss_pred HHhCCCCCCCEEeCCCCCCccc-cc-------------------------------------------------------
Confidence 3456677888888888766531 00
Q ss_pred cccccccccCCCCcccccchhhhhhhhcCCccc---EEeCCCC-CCChhhHHHHHHHHhccCCCcce-EEEeeCCCCChh
Q psy3611 196 SHNASNQSHNNSNQSHNTSNQSHMSLKTGARLV---ELDLSDN-AFGPIGVEGLADLLRSSCCFALE-ELKLNNNGLGIT 270 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~l~~~l~~~~~~~L~-~L~l~~~~i~~~ 270 (472)
+..++.|+ +|++++| .++......+ ..+++|+ +|++++|.++..
T Consensus 123 -------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~------~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 123 -------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAF------QGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp -------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTT------TTTBSSEEEEECCSCCCCEE
T ss_pred -------------------------cccccccccccEEECCCCcchhhcCcccc------cchhcceeEEEcCCCCCccc
Confidence 01123444 7888877 6654433222 2346788 888888877532
Q ss_pred HHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC-CChhhHHHHHHHHhcC-CCccEEeCCCCCCChhHHHHHHHHHhcC
Q psy3611 271 GCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR-LENEGAKMLAAVFKKL-KTLERVEMPQNGIYHVGITALSDAFEEN 348 (472)
Q Consensus 271 ~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 348 (472)
.. .....++|+.|++++|. +... -+.++..+ ++|+.|++++|+++.. +.. .+
T Consensus 172 ~~---------------~~~~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~l-----~~~--~~ 225 (239)
T 2xwt_C 172 QG---------------YAFNGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTAL-----PSK--GL 225 (239)
T ss_dssp CT---------------TTTTTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCCC-----CCT--TC
T ss_pred CH---------------hhcCCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCccccC-----Chh--Hh
Confidence 21 11122578888888884 7642 12345667 8899999998888732 221 46
Q ss_pred CCccEEEccCCC
Q psy3611 349 KNLRHLNLNDNT 360 (472)
Q Consensus 349 ~~L~~L~l~~n~ 360 (472)
++|+.|+++++.
T Consensus 226 ~~L~~L~l~~~~ 237 (239)
T 2xwt_C 226 EHLKELIARNTW 237 (239)
T ss_dssp TTCSEEECTTC-
T ss_pred ccCceeeccCcc
Confidence 788888887763
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-13 Score=140.75 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=104.3
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+..+++|++|++++|.+..... + ..+++|+.|+|++|.++.. +.++.+++|+.|++
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l------~~l~~L~~L~Ls~N~l~~l----------------~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--L------TNLKNLGWLFLDENKIKDL----------------SSLKDLKKLKSLSL 116 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--G------GGCTTCCEEECCSSCCCCC----------------TTSTTCTTCCEEEC
T ss_pred HccCCCCCEEEeeCCCCCCChh--h------ccCCCCCEEECcCCCCCCC----------------hhhccCCCCCEEEe
Confidence 4566788888888887754432 1 3456788888888877542 13455677888888
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
++|.+.. + ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.... .+..+++|+
T Consensus 117 s~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~ 178 (605)
T 1m9s_A 117 EHNGISD-----I-NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQ 178 (605)
T ss_dssp TTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCG------GGTTCTTCC
T ss_pred cCCCCCC-----C-ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCch------hhccCCCCC
Confidence 8887775 2 2356777888888888877632 35667788888888888777321 166777888
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
.|+|++|.+.+ + ..+..+++|+.|+|++|.+..
T Consensus 179 ~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 179 NLYLSKNHISD-----L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEEC
T ss_pred EEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCcC
Confidence 88888888775 3 346677888888888877655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-13 Score=127.30 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=111.3
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
+..++.|++|++++|.++... .+ ..+++|++|++++|.+++... +..+++|+.|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~--~l------~~l~~L~~L~L~~N~i~~~~~----------------l~~l~~L~~L~L 92 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA--GM------QFFTNLKELHLSHNQISDLSP----------------LKDLTKLEELSV 92 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCGG----------------GTTCSSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch--HH------hhCCCCCEEECCCCccCCChh----------------hccCCCCCEEEC
Confidence 345588899999998885443 22 235689999999988874321 244678999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
++|.+.+ ++. +.. ++|+.|++++|+++.. ..+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 93 ~~N~l~~-----l~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~------~~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKN-----LNG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSI------VMLGFLSKLE 153 (263)
T ss_dssp CSSCCSC-----CTT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBC------GGGGGCTTCC
T ss_pred CCCccCC-----cCc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCC------hHHccCCCCC
Confidence 9998875 222 122 7899999999988743 2477788999999999988842 3567788999
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
.|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 154 ~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 154 VLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEEC
T ss_pred EEECCCCcCcch------HHhccCCCCCEEeCCCCcccC
Confidence 999999988863 556778889999999888765
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-13 Score=134.03 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=122.9
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.|++|++++|.++... ..+++|+.|++++|.++... . ++ .+|+.|++++|.
T Consensus 80 ~~L~~L~Ls~N~l~~ip----------~~l~~L~~L~Ls~N~l~~ip---------------~-l~--~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 80 PQITVLEITQNALISLP----------ELPASLEYLDACDNRLSTLP---------------E-LP--ASLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCC----------CCCTTCCEEECCSSCCSCCC---------------C-CC--TTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcccc----------cccCCCCEEEccCCCCCCcc---------------h-hh--cCCCEEECCCCc
Confidence 57889999999886433 12468999999999886321 1 22 278999999998
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. ++. .+++|+.|++++|.++.. +. .+++|++|++++|.++. ++. +. ++|+.|++
T Consensus 132 l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~-----lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 132 LTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTF-----LPE-LP--ESLEALDV 187 (571)
T ss_dssp CSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-----CCC-CC--TTCCEEEC
T ss_pred CCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCC-----cch-hh--CCCCEEEC
Confidence 875 444 578999999999988732 22 46789999999998873 222 33 78999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCC-------CEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTL-------EDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L-------~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
++|.++. ++. +.. +| +.|+|++|.|+. ++..+..+++|++|++++|++++.....+...
T Consensus 188 s~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 188 STNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSCCSS-----CCC-CC----------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9998885 443 332 55 999999999886 67777788999999999999987766666553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-15 Score=154.37 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=24.5
Q ss_pred cCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.+++|+.|+|++|.+. .+|..+..+++|+.|++++|
T Consensus 347 ~~~~L~~L~Ls~n~L~-----~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-----VLQSELESCKELQELEPENK 382 (567)
T ss_dssp TTTTSSSCCCCHHHHH-----HHHHHHHHHHHHHHHCTTCH
T ss_pred cCccceeccCChhhHH-----hhHHHHHHHHHHHHhccccc
Confidence 3566777777777665 47777777777777777544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=124.14 Aligned_cols=218 Identities=16% Similarity=0.147 Sum_probs=147.3
Q ss_pred CcccEEeCCCCCCC-hh---hHHHHHHHHhccCCCcceEEEeeCCCCChhHH-----HHHHHHHHhhcccCcCCCCCcce
Q psy3611 225 ARLVELDLSDNAFG-PI---GVEGLADLLRSSCCFALEELKLNNNGLGITGC-----KLLSKALHDCYESSKKEGSPLAL 295 (472)
Q Consensus 225 ~~L~~L~l~~~~l~-~~---~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~-----~~l~~~l~~~~~~~~~~~~~~~L 295 (472)
.+++.|.+..+... .. ..+.+..... .+++|+.|.+......+... ..+...+. .+|+|
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~--~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~----------~~P~L 174 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKE--KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD----------AMPLL 174 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHH--HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH----------TCTTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhh--hcchhhheeecCcchhhcccccccccCHHHHHh----------cCCCC
Confidence 46778877765543 11 2233322121 23589999987653321000 01222222 25789
Q ss_pred eEEEcCCCC-CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccC--CC-CCcccHHHHHH
Q psy3611 296 KVFIAGRNR-LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLND--NT-ITYKGAIPLGQ 371 (472)
Q Consensus 296 ~~L~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~--n~-l~~~~~~~l~~ 371 (472)
+.|.++++. +. ++. + ..++|++|++..|.+...++..+.. ..+|+|++|+|+. +. .++.++..+..
T Consensus 175 ~~L~L~g~~~l~------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 175 NNLKIKGTNNLS------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CEEEEECCBTCB------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cEEEEeCCCCce------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHH
Confidence 999998873 22 222 2 4789999999999998877554432 3689999999864 22 22222323333
Q ss_pred Hhc--CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH
Q psy3611 372 ALS--KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 449 (472)
Q Consensus 372 ~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 449 (472)
.+. .+|+|++|++.+|.+++.++..++.+ ..+++|+.|+|+.|.+++.|+..++..+..+++|++|+++.|.|++.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 343 47899999999999998776666554 457899999999999999999889888888999999999999999999
Q ss_pred HHHHHHHHHhCCceeEEecCC
Q psy3611 450 VEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 450 ~~~l~~~l~~~~~L~~L~l~~ 470 (472)
++.+.+++ -..++++.
T Consensus 324 ~~~l~~al-----g~~~~~~~ 339 (362)
T 2ra8_A 324 KKELQKSL-----PMKIDVSD 339 (362)
T ss_dssp HHHHHHHC-----CSEEECCS
T ss_pred HHHHHHHc-----CCEEEecC
Confidence 99888754 34466654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=132.04 Aligned_cols=75 Identities=25% Similarity=0.430 Sum_probs=43.3
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 117 (472)
.+|++|++++|.++. +| ..+ .++|++|++++|.++. ++ ..+++|++|++++|.++. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~---lp--~~l--~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~-----ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---LP--DNL--PPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLST-----LPE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC---CC--SCC--CTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC-
T ss_pred CCccEEEeCCCCCCc---cC--HhH--cCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCC-----cch-
Confidence 467777777766642 33 212 2567777777776663 22 235667777777776664 232
Q ss_pred hhhCCCccEEEecCCcCC
Q psy3611 118 MKNKTKLKQINVSENQFG 135 (472)
Q Consensus 118 l~~~~~L~~L~l~~~~i~ 135 (472)
+.. +|++|++++|.++
T Consensus 118 l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp CCT--TCCEEECCSSCCS
T ss_pred hhc--CCCEEECCCCcCC
Confidence 222 6777777776654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-12 Score=121.15 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=36.4
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
++|+.|++.+|.+.+.+...+..+ ..+++|++|+++.|.+++.|...++..+..+++|+.|++++|.++++++..+.+
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 445555555554444332222211 123455555555555555554444444444555555555555555544444433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=108.52 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=75.6
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
+++++|++++|.+++. .++..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+++. ++..
T Consensus 17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 4566666666655421 1223344556666666666666532 3455566666777766666653 3444
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 470 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 470 (472)
+..+++|+.|++++|.+++.. .+..+..+++|++|++++|+++.... .....+..+++|+.|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTBC
T ss_pred hhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCCC
Confidence 455666777777777666521 12556666777777777776654321 1123455577777777653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=117.44 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=103.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+... .+..+..+++|+.|++++|+++... ...+..+++|+.|++++|.++... ...
T Consensus 40 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~----~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLDLGTNQLTVLP----SAV 107 (229)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEECCCCcCCccC----hhH
Confidence 5677777777777652 3445667788888888888876322 234567888888888888887321 134
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh--HH
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GV 450 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~ 450 (472)
+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+... ....+..+++|++|++++|++... ..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSI----PHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp TTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred hCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCcc----CHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 5678888888888888875 666677788888888888888763 224567788888888888887654 34
Q ss_pred HHHHHHHHhC
Q psy3611 451 EEMEKLMKSF 460 (472)
Q Consensus 451 ~~l~~~l~~~ 460 (472)
..+..++...
T Consensus 179 ~~l~~~~~~~ 188 (229)
T 3e6j_A 179 MYLRNWVADH 188 (229)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 5555555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=114.39 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=104.8
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++++.|++++|.+... .+..+..+++|+.|++++|+++... +..+.++++|++|++++|.++.... ..
T Consensus 32 ~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISELA----PDAFQGLRSLNSLVLYGNKITELPK----SL 99 (220)
T ss_dssp TTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEEC----TTTTTTCSSCCEEECCSSCCCCCCT----TT
T ss_pred cCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCcC----HHHhhCCcCCCEEECCCCcCCccCH----hH
Confidence 4688888888888752 2235667788888888888887432 4567778888888888888873211 34
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh-hHHH
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVE 451 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-~~~~ 451 (472)
+..+++|+.|++++|.+... .+..+..+++|+.|+|++|.++.. .+..+..+++|++|++++|++.. -...
T Consensus 100 f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQTI----AKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCEE----CHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 56788888888888888763 345667778888889888888763 23456778888889998888643 2334
Q ss_pred HHHHHHHhC
Q psy3611 452 EMEKLMKSF 460 (472)
Q Consensus 452 ~l~~~l~~~ 460 (472)
.+..++...
T Consensus 172 ~l~~~l~~~ 180 (220)
T 2v9t_B 172 WLADYLHTN 180 (220)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 555555543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=108.18 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred CcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 292 PLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 292 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++++.|++++|.+.+. .++..+..+++|+.|++++|.++.. ..+..+++|++|++++|.++.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 35788888888877621 1455556778888888888888733 4566788888999988888742 335
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEcc
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 441 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 441 (472)
.+..+++|++|++++|.+++.. .+..+..+++|+.|++++|.++.... .....+..+++|++|+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred HhhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 5566888899999988888621 23667788889999999888776321 001467778888888875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-12 Score=115.93 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=64.5
Q ss_pred HhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 317 FKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 317 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
+..+++|+.|++++|+++... +..+.++++|++|++++|.++... +..+..+++|++|++++|.+...
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~---- 120 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIE----EGAFEGASGVNEILLTSNRLENVQ----HKMFKGLESLKTLMLRSNRITCV---- 120 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----GGGGTTCSSCCEEECTTSCCCCB----
T ss_pred hccCCCCCEEECCCCcCCEEC----HHHhCCCCCCCEEECCCCccCccC----HhHhcCCcCCCEEECCCCcCCeE----
Confidence 345566666666666655321 224555666666666666665221 13455566666666666666542
Q ss_pred HHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 397 IAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 397 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
.+..+..+++|+.|+|++|.++.. .+..+..+++|++|++++|++.
T Consensus 121 ~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSSTTCTTCSEEECTTSCCCCB----CTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHcCCCccCCEEECCCCcCCEE----CHHHhcCCCCCCEEEecCcCCc
Confidence 234455566666666666666552 2445556666666666666653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-13 Score=113.32 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=68.9
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+.+. .++..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+... ++..
T Consensus 24 ~~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHH
T ss_pred ccCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHH
Confidence 4455555555555411 1333344555666666666655522 3444556666666666665531 1233
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
+..+++|+.|++++|.+++.. ....+..+++|+.|++++|.+..... .....+..+++|++|++++|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSG---GGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccCCccCcch---hHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCCh
Confidence 334566666666666665411 01344555666666666665554210 0012455566666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-14 Score=145.34 Aligned_cols=217 Identities=19% Similarity=0.228 Sum_probs=143.1
Q ss_pred hcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEE-c
Q psy3611 222 KTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFI-A 300 (472)
Q Consensus 222 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~-l 300 (472)
..++.|+.|++++|.+... +..+.. |++|++|++++|..- .....+...+......+..++.+++|+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L-p~~i~~------l~~L~~L~l~~n~~l-~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL-QSELES------CKELQELEPENKWCL-LTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH-HHHHHH------HHHHHHHCTTCHHHH-HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred ccCccceeccCChhhHHhh-HHHHHH------HHHHHHhccccchhh-hhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 3468888999998887422 334433 357888888654310 000011110001111111223345677777 5
Q ss_pred CCCCCChhhHHHHHH-HHh--cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCC
Q psy3611 301 GRNRLENEGAKMLAA-VFK--KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLP 377 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~-~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 377 (472)
+.+.+.+-....+.. .+. ....|+.|++++|.++. ++. +..+++|+.|++++|.++. ++..+..++
T Consensus 418 ~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~ 486 (567)
T 1dce_A 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALR 486 (567)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCT
T ss_pred hhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCC
Confidence 554332210000000 111 12479999999999983 344 7889999999999999982 456788999
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHH-HHHHhcCCcccEEEccCCCCChhHHHHHHHH
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDL-VKAMKNKTKLKQINVSENQFGEEGVEEMEKL 456 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 456 (472)
+|+.|++++|.+++ ++ .+..+++|+.|+|++|.++.. . +..+..+++|++|++++|+++... ......
T Consensus 487 ~L~~L~Ls~N~l~~-----lp-~l~~l~~L~~L~Ls~N~l~~~----~~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~l 555 (567)
T 1dce_A 487 CLEVLQASDNALEN-----VD-GVANLPRLQELLLCNNRLQQS----AAIQPLVSCPRLVLLNLQGNSLCQEE-GIQERL 555 (567)
T ss_dssp TCCEEECCSSCCCC-----CG-GGTTCSSCCEEECCSSCCCSS----STTGGGGGCTTCCEEECTTSGGGGSS-SCTTHH
T ss_pred CCCEEECCCCCCCC-----Cc-ccCCCCCCcEEECCCCCCCCC----CCcHHHhcCCCCCEEEecCCcCCCCc-cHHHHH
Confidence 99999999999996 56 788899999999999999873 2 788999999999999999986431 223345
Q ss_pred HHhCCceeEEec
Q psy3611 457 MKSFGMAAALVL 468 (472)
Q Consensus 457 l~~~~~L~~L~l 468 (472)
+..+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 556889998874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-12 Score=122.66 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=128.2
Q ss_pred cEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCC-CCcceeEEEcCCCCCC
Q psy3611 228 VELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEG-SPLALKVFIAGRNRLE 306 (472)
Q Consensus 228 ~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~-~~~~L~~L~l~~~~l~ 306 (472)
+.++++++.++.... .+ .+.++.|++++|.++.... ..+. .+++|+.|++++|.+.
T Consensus 21 ~~l~c~~~~l~~iP~-~~--------~~~l~~L~Ls~N~l~~l~~--------------~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SL--------PSYTALLDLSHNNLSRLRA--------------EWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TEEECCSSCCSSCCS-SC--------CTTCSEEECCSSCCCEECT--------------TSSSSCCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCccCc-cC--------CCCCCEEECCCCCCCccCh--------------hhhhhcccccCEEECCCCcCC
Confidence 578888887754321 11 1368899999999874321 1122 5688999999999988
Q ss_pred hhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCC
Q psy3611 307 NEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD 386 (472)
Q Consensus 307 ~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~ 386 (472)
.. .+..+..+++|+.|++++|+++... +..+..+++|++|++++|.+.... +..+..+++|+.|++++
T Consensus 78 ~i----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 78 FI----SSEAFVPVPNLRYLDLSSNHLHTLD----EFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp EE----CTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCS
T ss_pred cc----ChhhccCCCCCCEEECCCCcCCcCC----HHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCC
Confidence 63 2345778899999999999987432 345778899999999999988432 25677889999999999
Q ss_pred CCCChHHHHHHHHH-h---hcCCCCCEEECcCCCCCchhHHHHHHHHhcCCc--ccEEEccCCCCCh
Q psy3611 387 CLLKSAGASSIAKY-L---TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTK--LKQINVSENQFGE 447 (472)
Q Consensus 387 ~~i~~~~~~~l~~~-l---~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~l~~n~i~~ 447 (472)
|.++. ++.. + ..+++|+.|+|++|.|.... ...+..++. ++.|++++|++..
T Consensus 146 N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 146 NQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHhhcceEEecCCCccC
Confidence 99886 3332 2 45799999999999998742 345566665 4889999999864
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-12 Score=109.81 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=108.8
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
.+++|++|++++|.+++. .++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+. ++
T Consensus 22 ~~~~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LD 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CC
T ss_pred CcccCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HH
Confidence 457999999999998732 2344567789999999999999842 5677899999999999999874 45
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDE 472 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 472 (472)
..+..+++|+.|++++|.++... .+..+..+++|++|++++|+++.... .....+..+++|+.|+++++.
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSG---GGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETT
T ss_pred HHHhhCCCCCEEeccCCccCcch---hHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCC
Confidence 55567899999999999998731 12678889999999999999864322 223467789999999998763
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-12 Score=116.88 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=119.8
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+.+.++.+++.+.. +|.. -.++|+.|++++|.+.... +..+..+++|++|++++|.++.... ..+
T Consensus 20 s~~~v~c~~~~l~~-----ip~~--~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~i~~----~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-----VPAG--IPTNAQILYLHDNQITKLE----PGVFDSLINLKELYLGSNQLGALPV----GVF 84 (229)
T ss_dssp ETTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred eCCEeEccCCCcCc-----cCCC--CCCCCCEEEcCCCccCccC----HHHhhCccCCcEEECCCCCCCCcCh----hhc
Confidence 56778888887764 4432 2479999999999998432 4567789999999999999974221 456
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHH
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEM 453 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 453 (472)
..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.. ++..+..+++|++|++++|+++....
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~--- 152 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPH--- 152 (229)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCT---
T ss_pred ccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCH---
Confidence 7899999999999999863 23456788999999999999986 67888999999999999999874322
Q ss_pred HHHHHhCCceeEEecCCC
Q psy3611 454 EKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 454 ~~~l~~~~~L~~L~l~~~ 471 (472)
..+..+++|+.|++++|
T Consensus 153 -~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 153 -GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -TTTTTCTTCCEEECTTS
T ss_pred -HHHhCCCCCCEEEeeCC
Confidence 45667899999999886
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-12 Score=123.65 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=129.6
Q ss_pred ceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHh-cCCCccEEeCCCCCCCh
Q psy3611 257 LEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFK-KLKTLERVEMPQNGIYH 335 (472)
Q Consensus 257 L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~ 335 (472)
-+.++++++.++.. +..+ +..++.|++++|.+... .+.++. .+++|+.|++++|+|+.
T Consensus 20 ~~~l~c~~~~l~~i---------------P~~~--~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~ 78 (361)
T 2xot_A 20 SNILSCSKQQLPNV---------------PQSL--PSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNF 78 (361)
T ss_dssp TTEEECCSSCCSSC---------------CSSC--CTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCE
T ss_pred CCEEEeCCCCcCcc---------------CccC--CCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCc
Confidence 35788888887531 1112 24689999999999863 233444 78999999999999984
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCC
Q psy3611 336 VGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCN 415 (472)
Q Consensus 336 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n 415 (472)
.. +..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+... .+..+..+++|+.|+|++|
T Consensus 79 i~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 79 IS----SEAFVPVPNLRYLDLSSNHLHTLD----EFLFSDLQALEVLLLYNNHIVVV----DRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSS
T ss_pred cC----hhhccCCCCCCEEECCCCcCCcCC----HHHhCCCcCCCEEECCCCcccEE----CHHHhCCcccCCEEECCCC
Confidence 42 346778999999999999998422 14577899999999999999874 3567788899999999999
Q ss_pred CCCchhHHHHHHHH----hcCCcccEEEccCCCCChhHHHHHHHHHHhCCc--eeEEecCCC
Q psy3611 416 EISVQGGLDLVKAM----KNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM--AAALVLEDD 471 (472)
Q Consensus 416 ~i~~~~~~~l~~~l----~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~--L~~L~l~~~ 471 (472)
.+.. ++..+ ..+++|+.|++++|+++...... +..++. ++.|++++|
T Consensus 147 ~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 147 QISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD----LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCHHH----HHHSCHHHHTTEECCSS
T ss_pred cCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCHHH----hhhccHhhcceEEecCC
Confidence 9987 33332 56899999999999998654443 334665 367888776
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-12 Score=115.62 Aligned_cols=148 Identities=19% Similarity=0.263 Sum_probs=117.5
Q ss_pred eEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC
Q psy3611 296 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375 (472)
Q Consensus 296 ~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 375 (472)
+.++.+++.+.. +|..+ .++++.|++++|.|+... +..+..+++|++|++++|.++... +..+..
T Consensus 14 ~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVIP----PGAFSPYKKLRRIDLSNNQISELA----PDAFQG 78 (220)
T ss_dssp TEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECCSSCCCEEC----TTTTTT
T ss_pred CEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCcC----HhHhhCCCCCCEEECCCCcCCCcC----HHHhhC
Confidence 567777777764 44322 368999999999998432 346778999999999999998432 267788
Q ss_pred CCCCcEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 376 LPSLAILNLGDCLLKSAGASSIA-KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 376 ~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
+++|++|++++|.++. ++ ..+..+++|+.|+|++|.+... .+..+..+++|++|++++|+++....
T Consensus 79 l~~L~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~---- 145 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITE-----LPKSLFEGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQTIAK---- 145 (220)
T ss_dssp CSSCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----
T ss_pred CcCCCEEECCCCcCCc-----cCHhHccCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCEECH----
Confidence 9999999999999986 44 3467789999999999999874 35678889999999999999875433
Q ss_pred HHHHhCCceeEEecCCC
Q psy3611 455 KLMKSFGMAAALVLEDD 471 (472)
Q Consensus 455 ~~l~~~~~L~~L~l~~~ 471 (472)
..+..+++|+.|++++|
T Consensus 146 ~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHHhCCCCCCEEEeCCC
Confidence 34566899999999987
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-12 Score=114.64 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=117.7
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
-+.++++++.+.. +|.. -...++.|++++|.++... ....+..+++|++|++++|.++... ...+.
T Consensus 13 ~~~l~~s~n~l~~-----iP~~--~~~~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~i~~i~----~~~~~ 78 (220)
T 2v70_A 13 GTTVDCSNQKLNK-----IPEH--IPQYTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNKITDIE----EGAFE 78 (220)
T ss_dssp TTEEECCSSCCSS-----CCSC--CCTTCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred CCEeEeCCCCccc-----CccC--CCCCCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCcCCEEC----HHHhC
Confidence 3578888887764 4432 2446789999999987431 0134678999999999999998422 14678
Q ss_pred CCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHH
Q psy3611 375 KLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEME 454 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~ 454 (472)
.+++|++|++++|.+... .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|+++....
T Consensus 79 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~---- 146 (220)
T 2v70_A 79 GASGVNEILLTSNRLENV----QHKMFKGLESLKTLMLRSNRITCV----GNDSFIGLSSVRLLSLYDNQITTVAP---- 146 (220)
T ss_dssp TCTTCCEEECCSSCCCCC----CGGGGTTCSSCCEEECTTSCCCCB----CTTSSTTCTTCSEEECTTSCCCCBCT----
T ss_pred CCCCCCEEECCCCccCcc----CHhHhcCCcCCCEEECCCCcCCeE----CHhHcCCCccCCEEECCCCcCCEECH----
Confidence 899999999999999864 345678899999999999999874 36678889999999999999876433
Q ss_pred HHHHhCCceeEEecCCC
Q psy3611 455 KLMKSFGMAAALVLEDD 471 (472)
Q Consensus 455 ~~l~~~~~L~~L~l~~~ 471 (472)
..+..+++|+.|++++|
T Consensus 147 ~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTTTTCTTCCEEECCSC
T ss_pred HHhcCCCCCCEEEecCc
Confidence 45566899999999987
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-12 Score=109.33 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=92.5
Q ss_pred CCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 291 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 291 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.+++|+.|++++|.+.. ++......++|+.|++++|.++.. ..+..+++|++|++++|.++....
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~---- 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGE---- 81 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECS----
T ss_pred CcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCc----
Confidence 35677888888877764 322222234888888888888732 456678888888888888873211
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHH--HhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAK--YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 447 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 447 (472)
..+..+++|++|++++|.+++ ++. .+..+++|+.|++++|.+...... -...+..+++|+.|++++|.+.+
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCHHH
Confidence 223567888888888888875 443 667788888888888887652110 01246778888888888886543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-12 Score=114.78 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=17.5
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLG 268 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~ 268 (472)
+.|++|++++|.++......+ ..+++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVF------DELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTT------TTCTTCSEEECCSSCCC
T ss_pred CCCcEEEcCCCccCcCChhhh------cccccCcEEECCCCccC
Confidence 455555555555533221111 23445555555555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-11 Score=110.19 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=48.9
Q ss_pred hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHH
Q psy3611 318 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l 397 (472)
..+++|++|++++|+++... ...+..+++|++|++++|.++... ...+..+++|++|++++|.++.. .
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~ 116 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQLQSLP----NGVFDKLTQLKELALNTNQLQSL----P 116 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCC----C
T ss_pred cccccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCcCCccC----HhHhcCccCCCEEEcCCCcCccc----C
Confidence 34445555555555444211 122334455555555555444211 02234445555555555554431 1
Q ss_pred HHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCC
Q psy3611 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 445 (472)
Q Consensus 398 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 445 (472)
+..+..+++|+.|++++|.++.. ....+..+++|++|++++|++
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSCCB
T ss_pred HhHhccCCcCCEEECCCCcccee----CHHHhccCCCccEEEecCCCe
Confidence 12234445555555555554432 112234445555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-13 Score=118.62 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChH
Q psy3611 313 LAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~ 392 (472)
++..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++. ++..+..+++|++|++++|.+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~- 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS- 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC-
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc-
Confidence 44466677777777777777663 22 45566777777777776652 11233334667777777777765
Q ss_pred HHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH------HHHHHHHHHhCCceeEE
Q psy3611 393 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG------VEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 393 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~------~~~l~~~l~~~~~L~~L 466 (472)
++ .+..+++|+.|++++|.+...+ ....+..+++|++|++++|++.+.. .......+..+++|+.|
T Consensus 108 ----l~-~~~~l~~L~~L~l~~N~i~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 108 ----LS-GIEKLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp ----HH-HHHHHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred ----CC-ccccCCCCCEEECCCCcCCchh---HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 33 3455677777777777776521 1135667777777777777764432 22334556667777777
Q ss_pred e
Q psy3611 467 V 467 (472)
Q Consensus 467 ~ 467 (472)
|
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=106.45 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=103.5
Q ss_pred hcCCCccEEeCCCCCCChhHHHHHHHHHhcC-CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHH
Q psy3611 318 KKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASS 396 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~ 396 (472)
..+.+|++|++++|.++.. + .+..+ ++|++|++++|.++. . ..+..+++|++|++++|.+++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~--~----~~l~~l~~L~~L~Ls~N~l~~----- 78 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRK--L----DGFPLLRRLKTLLVNNNRICR----- 78 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCE--E----CCCCCCSSCCEEECCSSCCCE-----
T ss_pred CCcCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCc--c----cccccCCCCCEEECCCCcccc-----
Confidence 3577999999999999832 2 23344 499999999999984 2 567789999999999999986
Q ss_pred HH-HHhhcCCCCCEEECcCCCCCchhHHHHHH--HHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 397 IA-KYLTDNTTLEDVNLTCNEISVQGGLDLVK--AMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 397 l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
++ ..+..+++|+.|++++|.++. ++. .+..+++|++|++++|+++... ..-...+..+++|+.||++++
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEEC
T ss_pred cCcchhhcCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCcC
Confidence 33 334678999999999999987 454 6888999999999999986432 222335677999999999875
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-11 Score=128.10 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=63.3
Q ss_pred CCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 291 SPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 291 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.++.|+.|+|++|.+.. ++..+..+++|+.|+|++|.|+ .++..+..+++|+.|+|++|.++. ++
T Consensus 222 ~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~-----lp 286 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTS-----LP 286 (727)
T ss_dssp CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSS-----CC
T ss_pred cCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCc-----cC
Confidence 34556666666666553 3434445666666666666665 234445566666666666666551 23
Q ss_pred HHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 371 QALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
..+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCC
Confidence 445556666666666666653 45555566666666666666654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-11 Score=123.43 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=101.3
Q ss_pred HHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchh
Q psy3611 3 AAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAG 82 (472)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~ 82 (472)
++.|..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.++ .+| ..+..+++|++|+|++|.++.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~---~lp--~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLT---ELP--AEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCS---CCC--GGGGGGTTCCEEECTTSCCSS--
T ss_pred hhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCc---ccC--hhhhCCCCCCEEeCcCCcCCc--
Confidence 4568889999999999999874 5666678999999999999985 455 668899999999999999983
Q ss_pred HHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHH
Q psy3611 83 ASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
++..++.+++|++|+|++|.++. ++..+..+++|++|+|++|.+.+..+..+..
T Consensus 285 ---lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 285 ---LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp ---CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ---cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 57778889999999999999974 6777889999999999999999877766654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-11 Score=113.02 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=62.2
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc-EEEcCCCCCChHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA-ILNLGDCLLKSAGASSI 397 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~-~L~l~~~~i~~~~~~~l 397 (472)
.+++|+.+++++|+++..+ ..+|.++++|+++++.+| +...+. .++..+++|+ .+++.. .++..+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~----~~aF~~~~~L~~l~l~~n-i~~I~~----~aF~~~~~L~~~l~l~~-~l~~I~---- 289 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIP----DFTFAQKKYLLKIKLPHN-LKTIGQ----RVFSNCGRLAGTLELPA-SVTAIE---- 289 (329)
T ss_dssp HCTTCCEEECTTBCCCEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEEECT-TCCEEC----
T ss_pred hcCCCeEEECCCCCcceec----HhhhhCCCCCCEEECCcc-cceehH----HHhhCChhccEEEEEcc-cceEEc----
Confidence 4666777777766665333 345666777777777666 443232 4566677777 777766 444321
Q ss_pred HHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEE
Q psy3611 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQIN 439 (472)
Q Consensus 398 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 439 (472)
..++..|++|+.+++++|.+...+ ..++.+|++|+.+.
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhc
Confidence 245666777777777777666532 33566677777665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-11 Score=104.71 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=60.0
Q ss_pred CccEEeCCCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 322 TLERVEMPQNGIYHVGITALS-DAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
+++.|++++|.++... + ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++. .+..
T Consensus 30 ~l~~L~l~~n~i~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRIS----SDGLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKEI----SNKM 97 (192)
T ss_dssp TCSEEECCSCCCCSBC----CSCSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCEE----CSSS
T ss_pred CCCEEECCCCcCCccC----CccccccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCcc----CHHH
Confidence 5666666666654221 1 1244566666666666666521 113455566666666666666542 2233
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+..+++|+.|++++|.++.. .+..+..+++|++|++++|++.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCcc
Confidence 45556666666666666553 3445555666666666666654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-11 Score=106.55 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
++..|..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .++ ..+..+++|++|++++|.+++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~---~l~--~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIK---KIE--NLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEEC---SCS--SHHHHHHHCSEEEEEEEECCCH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcc---ccc--chhhcCCcCCEEECcCCcCCcC
Confidence 45689999999999999998875 34 6778899999999999885 233 4456668999999999999862
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH------HHHHHHHHhchhhHHh
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV------EEMEKLMKSFGMAAAL 155 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~------~~l~~~l~~~~~l~~L 155 (472)
+ .+..+++|++|++++|.+++.. ....+..+++|++|++++|.+....+ ......+..++.++.|
T Consensus 109 -----~-~~~~l~~L~~L~l~~N~i~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 109 -----S-GIEKLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp -----H-HHHHHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred -----C-ccccCCCCCEEECCCCcCCchh---HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 3 3566789999999999998621 12467889999999999998865532 2334445667777766
Q ss_pred hhccC
Q psy3611 156 VLEDD 160 (472)
Q Consensus 156 ~~~~~ 160 (472)
..+.+
T Consensus 180 d~~~i 184 (198)
T 1ds9_A 180 DGMPV 184 (198)
T ss_dssp CCGGG
T ss_pred CCccc
Confidence 54433
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-12 Score=124.75 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=72.0
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH-HHhh
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA-KYLT 91 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~-~~l~ 91 (472)
+.++.++++++. +|..+ .+++++|+|++|.++ .++- .+|..+++|++|+|++|.+.+. ++ ..+.
T Consensus 12 ~~v~C~~~~Lt~-----iP~~l--~~~l~~L~Ls~N~i~---~i~~-~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTE-----IPSDL--PRNAIELRFVLTKLR---VIQK-GAFSGFGDLEKIEISQNDVLEV----IEADVFS 76 (350)
T ss_dssp TEEEEESTTCCS-----CCTTC--CTTCSEEEEESCCCS---EECT-TSSTTCTTCCEEEEECCTTCCE----ECTTSBC
T ss_pred CEEEecCCCCCc-----cCcCc--CCCCCEEEccCCcCC---CcCH-HHHcCCCCCCEEECcCCCCCCc----cChhHhh
Confidence 567777777774 45444 367899999999885 2331 4678889999999999987542 22 2345
Q ss_pred cCCcccE-EECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 92 DNTTLED-VNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 92 ~~~~L~~-L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
.+++++. +.+++|.+... .+..+..+++|++|++++|.+..
T Consensus 77 ~L~~l~~~l~~~~N~l~~l----~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYI----NPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SCTTCCEEEEEEETTCCEE----CTTSBCCCTTCCEEEEEEECCSS
T ss_pred cchhhhhhhcccCCccccc----Cchhhhhcccccccccccccccc
Confidence 5666554 66667777752 24556778899999999887753
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-10 Score=101.18 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=85.7
Q ss_pred eEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC
Q psy3611 296 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375 (472)
Q Consensus 296 ~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 375 (472)
+.++++++.+.. +|.. -.++|++|++++|.++ .++..+..+++|+.|++++|.++... +..+..
T Consensus 13 ~~l~~~~~~l~~-----ip~~--~~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~----~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LPKG--IPRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLS----NQSFSN 76 (193)
T ss_dssp TEEECTTSCCSS-----CCSC--CCTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCC----TTTTTT
T ss_pred CEEEcCCCCCCc-----CCCC--CCCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeC----HhHccC
Confidence 456666666553 3322 1346777777777776 23345667777777777777776321 144666
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCCh-hHHHHHH
Q psy3611 376 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE-EGVEEME 454 (472)
Q Consensus 376 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-~~~~~l~ 454 (472)
+++|++|++++|.++.. .+.++..+++|+.|+|++|.|... ....+..+++|++|++++|++.. -.+..+.
T Consensus 77 l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCI----PPRTFDGLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp CTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCCEEECCCCccCEe----CHHHhCCCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence 77777777777777653 234566677777777777777752 12245667777788887777643 2234444
Q ss_pred HHHHh
Q psy3611 455 KLMKS 459 (472)
Q Consensus 455 ~~l~~ 459 (472)
.+++.
T Consensus 149 ~~~~~ 153 (193)
T 2wfh_A 149 DWVKS 153 (193)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-10 Score=96.39 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=92.2
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+.+.++++++.+.. ++.. -.++|++|++++|+++... ...+..+++|++|++++|.++.... ..+
T Consensus 8 ~~~~l~~~~~~l~~-----~p~~--~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~ 72 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-----VPTG--IPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSQNQIQSLPD----GVF 72 (177)
T ss_dssp ETTEEECCSSCCSS-----CCTT--CCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred CCCEEEecCCCCcc-----CCCC--CCCCCcEEEeCCCcccEeC----HHHhcCcccccEEECCCCcceEeCh----hHc
Confidence 34566666666653 2221 2357788888887776321 2345667788888888887763211 345
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH--HH
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG--VE 451 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~--~~ 451 (472)
..+++|+.|++++|.++.. .+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|++.... .+
T Consensus 73 ~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSL----PNGVFDKLTQLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRID 144 (177)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred cCCCccCEEECCCCCcccc----CHHHhhCCcccCEEECcCCcceEe----CHHHhcCCcccCEEEecCCCeeccCccHH
Confidence 6677888888888887752 223456678888888888877752 1223466778888888888876533 45
Q ss_pred HHHHHHHhCC
Q psy3611 452 EMEKLMKSFG 461 (472)
Q Consensus 452 ~l~~~l~~~~ 461 (472)
.+..++....
T Consensus 145 ~l~~~~~~~~ 154 (177)
T 2o6r_A 145 YLSRWLNKNS 154 (177)
T ss_dssp HHHHHHHHTG
T ss_pred HHHHHHhhCc
Confidence 5556665544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-10 Score=111.10 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=79.1
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
.++..+.+.++ +.......+... |++|+.+++++|.+..-+ ..+|..+.+|++++++.+ +.
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~-------------~~~L~~l~L~~n~i~~I~----~~aF~~~~~L~~l~l~~n-i~ 262 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDY-------------MPNLVSLDISKTNATTIP----DFTFAQKKYLLKIKLPHN-LK 262 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHH-------------CTTCCEEECTTBCCCEEC----TTTTTTCTTCCEEECCTT-CC
T ss_pred cccceEEEeee-ecHHHHHHHHHh-------------cCCCeEEECCCCCcceec----HhhhhCCCCCCEEECCcc-cc
Confidence 35666666654 333333333221 456777888777666421 125667788888888876 54
Q ss_pred hhHHHHHHHHHhcCCCcc-EEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q psy3611 335 HVGITALSDAFEENKNLR-HLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVN 411 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 411 (472)
..+ ..+|.++++|+ .+++.+ .++..+. .++..|++|+.|+++.+.+...+ ..++..+++|+.+.
T Consensus 263 ~I~----~~aF~~~~~L~~~l~l~~-~l~~I~~----~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 263 TIG----QRVFSNCGRLAGTLELPA-SVTAIEF----GAFMGCDNLRYVLATGDKITTLG----DELFGNGVPSKLIY 327 (329)
T ss_dssp EEC----TTTTTTCTTCCEEEEECT-TCCEECT----TTTTTCTTEEEEEECSSCCCEEC----TTTTCTTCCCCEEE
T ss_pred eeh----HHHhhCChhccEEEEEcc-cceEEch----hhhhCCccCCEEEeCCCccCccc----hhhhcCCcchhhhc
Confidence 333 45677788888 888877 5553332 56777888888888887777632 24667777887765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.92 E-value=6e-10 Score=97.39 Aligned_cols=110 Identities=22% Similarity=0.366 Sum_probs=80.6
Q ss_pred ceeEEEcCCCCCChhhHHHHHH--HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAA--VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
+++.|++++|.+.. ++. .+..+++|++|++++|+++... +..+.++++|++|++++|.++... +.
T Consensus 30 ~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~ 96 (192)
T 1w8a_A 30 HTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEIS----NK 96 (192)
T ss_dssp TCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEEC----SS
T ss_pred CCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccC----HH
Confidence 68888888888765 222 3667888888888888887321 456777888888888888887322 14
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ 420 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 420 (472)
.+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+...
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBCCS
T ss_pred HhcCCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCccCc
Confidence 466778888888888888764 456667778888888888877643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-11 Score=119.51 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=77.4
Q ss_pred CCccEEeccCCCcchhhHHHHH-HhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcE-EeccCccccchhHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAI-LNLGDCLLKSAGASSIA 87 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~-L~ls~~~l~~~~~~~l~ 87 (472)
+++++|+|++|.|+. ++ ..|.++++|++|+|++|.+. +.++. .+|..++++++ +.++.|.+... -+
T Consensus 30 ~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~--~~i~~-~~f~~L~~l~~~l~~~~N~l~~l----~~ 97 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVL--EVIEA-DVFSNLPKLHEIRIEKANNLLYI----NP 97 (350)
T ss_dssp TTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTC--CEECT-TSBCSCTTCCEEEEEEETTCCEE----CT
T ss_pred CCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCC--CccCh-hHhhcchhhhhhhcccCCccccc----Cc
Confidence 579999999999985 34 46889999999999999874 33331 45778888775 66677888763 24
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
..+..+++|++|++++|.+.... ........++..|++.++
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESC
T ss_pred hhhhhccccccccccccccccCC----chhhcccchhhhhhhccc
Confidence 55677899999999999987521 112234456777877553
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-10 Score=96.61 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=87.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|++|++++|.++. ++..+..+++|++|++++|.++. ..+ ..|..+++|++|++++|.++.. .+..
T Consensus 31 ~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~--i~~--~~f~~l~~L~~L~Ls~N~l~~i----~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRIST--LSN--QSFSNMTQLLTLILSYNRLRCI----PPRT 97 (193)
T ss_dssp TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCC--CCT--TTTTTCTTCCEEECCSSCCCBC----CTTT
T ss_pred CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCE--eCH--hHccCCCCCCEEECCCCccCEe----CHHH
Confidence 579999999998874 56778889999999999999863 333 5688899999999999999874 2345
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
+..+++|++|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCCee
Confidence 67789999999999999852 2234667889999999999764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=93.74 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=93.6
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
.++|++|++++|.+.. ..+..+..+++|++|++++|.+. +..+ ..+..+++|++|++++|.+++. .+.
T Consensus 27 ~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~--~~~~--~~~~~l~~L~~L~l~~N~l~~~----~~~ 94 (177)
T 2o6r_A 27 PSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQ--SLPD--GVFDKLTKLTILYLHENKLQSL----PNG 94 (177)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcce--EeCh--hHccCCCccCEEECCCCCcccc----CHH
Confidence 3689999999999885 22455788899999999999985 3333 4578899999999999999863 234
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH--HHHHHHHH
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV--EEMEKLMK 147 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~l~ 147 (472)
.+..+++|++|++++|.++.. .+..+..+++|++|++++|.+....+ ..+...+.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~ 151 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 151 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred HhhCCcccCEEECcCCcceEe----CHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHh
Confidence 456789999999999999852 22335678999999999999876543 33444433
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=90.43 Aligned_cols=93 Identities=13% Similarity=0.252 Sum_probs=64.4
Q ss_pred CCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHH
Q psy3611 349 KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDC-LLKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLV 426 (472)
Q Consensus 349 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 426 (472)
..|+.||++++.+++.|. ..+..+++|++|+|++| .+++.|...+...-..+++|+.|+|++| .|++.|+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII--- 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---
Confidence 457888888888877776 44567888888888887 4777776555431011246888888887 58887643
Q ss_pred HHHhcCCcccEEEccCCC-CChhH
Q psy3611 427 KAMKNKTKLKQINVSENQ-FGEEG 449 (472)
Q Consensus 427 ~~l~~~~~L~~L~l~~n~-i~~~~ 449 (472)
.+..+++|++|++++|+ +++.+
T Consensus 134 -~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 134 -ALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -HGGGCTTCCEEEEESCTTCCCHH
T ss_pred -HHhcCCCCCEEECCCCCCCCchH
Confidence 34567888888888876 77655
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-09 Score=92.68 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred eeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhc
Q psy3611 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALS 374 (472)
Q Consensus 295 L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 374 (472)
.+.++++++.+.. +|..+ .++|+.|++++|.|+... +..+.++++|++|++++|.++... ...+.
T Consensus 11 ~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKLE----PGVFDRLTQLTRLDLDNNQLTVLP----AGVFD 75 (170)
T ss_dssp TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCC----TTTTT
T ss_pred CCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCccC----hhhhcCcccCCEEECCCCCcCccC----hhhcc
Confidence 4556666665553 22211 245555555555554211 233444555555555555544211 02233
Q ss_pred CCCCCcEEEcCCCCCC
Q psy3611 375 KLPSLAILNLGDCLLK 390 (472)
Q Consensus 375 ~~~~L~~L~l~~~~i~ 390 (472)
.+++|++|++++|.++
T Consensus 76 ~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCccC
Confidence 4444444444444444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=86.28 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCC-CChhHHHHHHHHHhcCCCccEEEccCCC-CCcccHHHHHH
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNG-IYHVGITALSDAFEENKNLRHLNLNDNT-ITYKGAIPLGQ 371 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~ 371 (472)
.|++||++++.+++.|+..+ ..+++|++|++++|. ++|.|+..+...-..+++|++|++++|. +++.|..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---- 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---- 133 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH----
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH----
Confidence 35555555555555544322 345555555555552 5555544443210001345555555542 5554442
Q ss_pred HhcCCCCCcEEEcCCC
Q psy3611 372 ALSKLPSLAILNLGDC 387 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~ 387 (472)
.+..+++|++|++++|
T Consensus 134 ~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HGGGCTTCCEEEEESC
T ss_pred HHhcCCCCCEEECCCC
Confidence 2334555555555555
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-09 Score=88.68 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=92.6
Q ss_pred CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 11 ~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
..+.++++++.++. +|..+ .++|++|++++|.+. +..+ ..+..+++|++|++++|.++.. .+..+
T Consensus 10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~--~~~~--~~~~~l~~L~~L~Ls~N~l~~l----~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQIT--KLEP--GVFDRLTQLTRLDLDNNQLTVL----PAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCC--CCCT--TTTTTCTTCSEEECCSSCCCCC----CTTTT
T ss_pred CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCC--ccCh--hhhcCcccCCEEECCCCCcCcc----Chhhc
Confidence 46789999998885 45444 378999999999986 3334 5688899999999999999863 23445
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChh--hHHHHHHHHHhchh
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE--GVEEMEKLMKSFGM 151 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~--~~~~l~~~l~~~~~ 151 (472)
..+++|++|+|++|.+... .+..+..+++|++|++++|.+.-. ....+...++..+.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~ 133 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSI----PRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG 133 (170)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred cCCCCCCEEECCCCccCEe----CHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence 6789999999999999862 233577889999999999988654 24455555554443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.69 E-value=5e-09 Score=89.86 Aligned_cols=103 Identities=25% Similarity=0.307 Sum_probs=52.3
Q ss_pred eEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC
Q psy3611 296 KVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK 375 (472)
Q Consensus 296 ~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 375 (472)
+.++++++.+.. +|..+ .++|+.|++++|.|.... +..+.++++|++|++++|.++. ... ..+..
T Consensus 15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~--i~~--~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTA--IPT--GVFDK 79 (174)
T ss_dssp SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCC--CCT--TTTTT
T ss_pred cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCc--cCh--hHhCC
Confidence 566666666653 33321 256666666666655221 3344555666666666665552 100 22344
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHH-HhhcCCCCCEEECcCCCCC
Q psy3611 376 LPSLAILNLGDCLLKSAGASSIAK-YLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 376 ~~~L~~L~l~~~~i~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~ 418 (472)
+++|+.|++++|.+.. ++. .+..+++|+.|+|++|.+.
T Consensus 80 l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBC
T ss_pred cchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCcc
Confidence 5555555555555553 222 2444555555555555544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-08 Score=85.55 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=88.4
Q ss_pred ccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhh
Q psy3611 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLT 91 (472)
Q Consensus 12 L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~ 91 (472)
-+.++++++.++. +|..+ .++|++|++++|.+. +..+ ..+..+++|++|+|++|.+++. -+..+.
T Consensus 14 ~~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~--~~~~--~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQIT--KLEP--GVFDHLVNLQQLYFNSNKLTAI----PTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSSCCCCC----CTTTTT
T ss_pred CcEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCcc--ccCH--HHhcCCcCCCEEECCCCCCCcc----ChhHhC
Confidence 4689999998874 55544 389999999999985 4444 5688999999999999999863 123356
Q ss_pred cCCcccEEECcCCccCcchHHHHHH-HhhhCCCccEEEecCCcCChh--hHHHHHHHHH
Q psy3611 92 DNTTLEDVNLTCNEISVQGGLDLVK-AMKNKTKLKQINVSENQFGEE--GVEEMEKLMK 147 (472)
Q Consensus 92 ~~~~L~~L~l~~~~i~~~~~~~l~~-~l~~~~~L~~L~l~~~~i~~~--~~~~l~~~l~ 147 (472)
.+++|++|+|++|.+.. ++. .+..+++|++|++++|.+.-. ....+...+.
T Consensus 79 ~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp TCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred CcchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 78999999999999985 333 477889999999999988644 2344444443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-07 Score=92.74 Aligned_cols=103 Identities=14% Similarity=0.211 Sum_probs=61.7
Q ss_pred hcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHH
Q psy3611 8 KLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87 (472)
Q Consensus 8 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~ 87 (472)
-+..++.+.+... ++.-+ ..+|..+ +|+.+.+..+ +...+. .+|..+ +|+.+.+.. .+...+ .
T Consensus 111 ~~~~l~~i~ip~~-i~~I~----~~aF~~~-~L~~i~l~~~-i~~I~~----~aF~~~-~L~~i~lp~-~l~~I~----~ 173 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIP----KDAFRNS-QIAKVVLNEG-LKSIGD----MAFFNS-TVQEIVFPS-TLEQLK----E 173 (401)
T ss_dssp ECSSCSEEECCTT-CCEEC----TTTTTTC-CCSEEECCTT-CCEECT----TTTTTC-CCCEEECCT-TCCEEC----S
T ss_pred ecCCccEEEECCc-cCEeh----HhhcccC-CccEEEeCCC-ccEECH----HhcCCC-CceEEEeCC-CccEeh----H
Confidence 4567777777664 33211 3345554 6888888765 433333 345554 688888875 444322 1
Q ss_pred HHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 88 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.++..+++|+.++++.|.+..- +...-.+.+|+.+.+..+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I-----~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKL-----PASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEE-----CTTTTTTCCCSEEECCTT
T ss_pred HHhhCcccCCeeecCCCcceEe-----chhhEeecccCEEEeCCc
Confidence 3455678888888888777642 222223678888887643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.5e-08 Score=93.66 Aligned_cols=329 Identities=15% Similarity=0.168 Sum_probs=172.3
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.+|.+|+.+.|..+ ++.-| ..+|.+|++|+.+++..+ +...+. .++..+.+|+.+.+..+ +...+.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIG----EFAFENCSKLEIINIPDS-VKMIGR----CTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEEC----TTTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC-ccCcc----hhHhhCCCCCcEEEeCCC-ceEccc----hhhcccccchhhcccCc-eeeecc
Confidence 47888999999999754 44322 456888899999998754 332232 45778888888777654 222211
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
.++..+..++..........+ ..++..|++|+.+.+.++.. .-.... +..+.+|+.+.+..
T Consensus 134 ----~aF~~~~~~~~~~~~~~~~i~------~~aF~~c~~L~~i~l~~~~~-~I~~~~----F~~c~~L~~i~l~~---- 194 (394)
T 4fs7_A 134 ----EAFKGCDFKEITIPEGVTVIG------DEAFATCESLEYVSLPDSME-TLHNGL----FSGCGKLKSIKLPR---- 194 (394)
T ss_dssp ----TTTTTCCCSEEECCTTCCEEC------TTTTTTCTTCCEEECCTTCC-EECTTT----TTTCTTCCBCCCCT----
T ss_pred ----eeeecccccccccCccccccc------hhhhcccCCCcEEecCCccc-eecccc----ccCCCCceEEEcCC----
Confidence 122233322222222221111 13456788888888765421 100000 01122221111110
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
.+.......+..+..|+.+.+..+...... .
T Consensus 195 ------------------------------------------------~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~-~ 225 (394)
T 4fs7_A 195 ------------------------------------------------NLKIIRDYCFAECILLENMEFPNSLYYLGD-F 225 (394)
T ss_dssp ------------------------------------------------TCCEECTTTTTTCTTCCBCCCCTTCCEECT-T
T ss_pred ------------------------------------------------CceEeCchhhccccccceeecCCCceEeeh-h
Confidence 011111223344566666655544331100 0
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
. ..+..|+.+.+.... +..+ ...+..|..++.+.+..+...- -..++..+..+
T Consensus 226 ~-------~~~~~l~~i~ip~~~-~~i~--------------~~~f~~~~~l~~~~~~~~~~~i-----~~~~F~~~~~l 278 (394)
T 4fs7_A 226 A-------LSKTGVKNIIIPDSF-TELG--------------KSVFYGCTDLESISIQNNKLRI-----GGSLFYNCSGL 278 (394)
T ss_dssp T-------TTTCCCCEEEECTTC-CEEC--------------SSTTTTCSSCCEEEECCTTCEE-----CSCTTTTCTTC
T ss_pred h-------cccCCCceEEECCCc-eecc--------------cccccccccceeEEcCCCccee-----ecccccccccc
Confidence 0 123467777664422 1100 0112335667777776554321 11244567777
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.+......+.+ .++..+.+|+.+.+..+ +...|. .++..|++|+.+++..+ +...| ..++..
T Consensus 279 ~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~----~~aF~~ 341 (394)
T 4fs7_A 279 KKVIYGSVIVPE-------KTFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSLVSIDLPYL-VEEIG----KRSFRG 341 (394)
T ss_dssp CEEEECSSEECT-------TTTTTCTTCCEEEECTT-CCEECT----TTTTTCTTCCEECCCTT-CCEEC----TTTTTT
T ss_pred ceeccCceeecc-------ccccccccccccccccc-cceech----hhhcCCCCCCEEEeCCc-ccEEh----HHhccC
Confidence 777776665542 24556778888888654 443232 45677888888888643 44321 246677
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEE
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 466 (472)
|.+|+.+.+..+ +...| ..++.+|++|+++.+..+ +. .+..++..+++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~lp~~-~~-----~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIG----ANAFQGCINLKKVELPKR-LE-----QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEEC----TTTBTTCTTCCEEEEEGG-GG-----GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEeh----HHHhhCCCCCCEEEECCC-CE-----EhhheecCCCCCcEE
Confidence 788888888665 33321 246778888888888653 21 122346667777764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-07 Score=87.85 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=82.3
Q ss_pred cEEeccCC-CcchhhHHHHHHhhhcCCCCCeeeCCC-CccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHh
Q psy3611 13 EHVEMPQN-GIYHVGITALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYL 90 (472)
Q Consensus 13 ~~L~L~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l 90 (472)
..++++++ .++. +|. +..+++|++|+|++ |.+. +..+ ..|..+++|++|+|++|.+++. .+..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~--~~~~--~~~~~l~~L~~L~l~~N~l~~~----~~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQ--HLEL--RDLRGLGELRNLTIVKSGLRFV----APDAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCC--EECG--GGSCSCCCCSEEECCSSCCCEE----CTTGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCC--CcCh--hHhccccCCCEEECCCCcccee----CHHHh
Confidence 35788877 7774 777 88899999999996 8885 3444 5688999999999999999874 45567
Q ss_pred hcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 91 TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 91 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
..+++|++|+|++|.++. ++..+.....|+.|++.+|.+.-
T Consensus 77 ~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 889999999999999985 33333333349999999998863
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-07 Score=89.77 Aligned_cols=306 Identities=19% Similarity=0.190 Sum_probs=166.6
Q ss_pred HHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhH
Q psy3611 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 83 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~ 83 (472)
.+|.+|++|+.+++..+ +..-| ..++..|+.|+.+.+..+ +...+. .+|..+..+..........-+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~c~~L~~i~~p~~-l~~i~~----~aF~~~~~~~~~~~~~~~~i~--- 154 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIG----RCTFSGCYALKSILLPLM-LKSIGV----EAFKGCDFKEITIPEGVTVIG--- 154 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEEC----TTTTTTCTTCCCCCCCTT-CCEECT----TTTTTCCCSEEECCTTCCEEC---
T ss_pred hHhhCCCCCcEEEeCCC-ceEcc----chhhcccccchhhcccCc-eeeecc----eeeecccccccccCccccccc---
Confidence 47999999999999866 44322 355888999998877654 222222 345555544444333322111
Q ss_pred HHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCC
Q psy3611 84 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGE 163 (472)
Q Consensus 84 ~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~ 163 (472)
..++..+++|+.+.+..+...-. ...+..+.+|+.+.+..+ +..-....+ ..+..|+.
T Consensus 155 ---~~aF~~c~~L~~i~l~~~~~~I~-----~~~F~~c~~L~~i~l~~~-~~~I~~~~F----~~~~~L~~--------- 212 (394)
T 4fs7_A 155 ---DEAFATCESLEYVSLPDSMETLH-----NGLFSGCGKLKSIKLPRN-LKIIRDYCF----AECILLEN--------- 212 (394)
T ss_dssp ---TTTTTTCTTCCEEECCTTCCEEC-----TTTTTTCTTCCBCCCCTT-CCEECTTTT----TTCTTCCB---------
T ss_pred ---hhhhcccCCCcEEecCCccceec-----cccccCCCCceEEEcCCC-ceEeCchhh----ccccccce---------
Confidence 13456678899988876532210 234567788888887654 211000000 01111111
Q ss_pred CCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHH
Q psy3611 164 CSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243 (472)
Q Consensus 164 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 243 (472)
+.+.... .........+..|+.+.+....- ..+..
T Consensus 213 ---------------------------i~~~~~~-----------------~~i~~~~~~~~~l~~i~ip~~~~-~i~~~ 247 (394)
T 4fs7_A 213 ---------------------------MEFPNSL-----------------YYLGDFALSKTGVKNIIIPDSFT-ELGKS 247 (394)
T ss_dssp ---------------------------CCCCTTC-----------------CEECTTTTTTCCCCEEEECTTCC-EECSS
T ss_pred ---------------------------eecCCCc-----------------eEeehhhcccCCCceEEECCCce-ecccc
Confidence 1110000 00000111235666666543221 11111
Q ss_pred HHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCc
Q psy3611 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTL 323 (472)
Q Consensus 244 ~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L 323 (472)
.+ ..|..++.+.+..+...- ....+..+..++.+......+... ++..+.+|
T Consensus 248 ~f------~~~~~l~~~~~~~~~~~i---------------~~~~F~~~~~l~~~~~~~~~i~~~-------~F~~~~~L 299 (394)
T 4fs7_A 248 VF------YGCTDLESISIQNNKLRI---------------GGSLFYNCSGLKKVIYGSVIVPEK-------TFYGCSSL 299 (394)
T ss_dssp TT------TTCSSCCEEEECCTTCEE---------------CSCTTTTCTTCCEEEECSSEECTT-------TTTTCTTC
T ss_pred cc------cccccceeEEcCCCccee---------------eccccccccccceeccCceeeccc-------cccccccc
Confidence 11 235567777776543210 011223356677777666554432 45577888
Q ss_pred cEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc
Q psy3611 324 ERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 403 (472)
Q Consensus 324 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~ 403 (472)
+.+.+..+ +...| ..+|.++.+|+.+++..+ ++..|. .++..|++|+.+.+..+ ++..+ ..++..
T Consensus 300 ~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~ 364 (394)
T 4fs7_A 300 TEVKLLDS-VKFIG----EEAFESCTSLVSIDLPYL-VEEIGK----RSFRGCTSLSNINFPLS-LRKIG----ANAFQG 364 (394)
T ss_dssp CEEEECTT-CCEEC----TTTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEEC----TTTBTT
T ss_pred cccccccc-cceec----hhhhcCCCCCCEEEeCCc-ccEEhH----HhccCCCCCCEEEECcc-ccEeh----HHHhhC
Confidence 88888764 33222 346777888999988654 543333 56778889999988765 44422 256788
Q ss_pred CCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEE
Q psy3611 404 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438 (472)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 438 (472)
|++|+.+++..+ +.. +..++.+|++|+.+
T Consensus 365 C~~L~~i~lp~~-~~~-----~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKR-LEQ-----YRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGG-GGG-----GGGGBCTTCEEEEE
T ss_pred CCCCCEEEECCC-CEE-----hhheecCCCCCcEE
Confidence 899999988654 222 23457778888765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-07 Score=86.45 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=63.0
Q ss_pred eEEEcCCC-CCChhhHHHHHHHHhcCCCccEEeCCC-CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 296 KVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 296 ~~L~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
..++.+++ .+.. +|. +..+.+|+.|+|++ |.++... +..|.++++|+.|+|++|.+. +.. +..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~--~~~--~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLR--FVA--PDAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCC--EEC--TTGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccc--eeC--HHHh
Confidence 34566666 6664 565 66666777777775 7766321 245666777777777777776 321 2455
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
..+++|+.|+|++|.+.. ++........|+.|+|.+|.+.-
T Consensus 77 ~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 667777777777777664 33222222237777777776653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.02 E-value=8.7e-06 Score=74.07 Aligned_cols=43 Identities=35% Similarity=0.428 Sum_probs=20.5
Q ss_pred cCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 36 ENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 36 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
.+++|+.|+|++|.+.....++ ..+..+++|+.|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~--~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT--THHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccch--hHHhhCCCCCEEECCCCccCC
Confidence 3455555555555554222222 334445555555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.4e-05 Score=71.20 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=64.7
Q ss_pred hhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch---h
Q psy3611 6 FKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA---G 82 (472)
Q Consensus 6 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~---~ 82 (472)
..++++|+.|+|++|.++.-. .++..+..+++|++|+|++|.+.... .+ ..+..+ +|++|++++|++.+. .
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSER--EL-DKIKGL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred HhhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCch--hh-hhcccC-CcceEEccCCcCccccCcc
Confidence 357899999999999988522 35566778999999999999996432 22 234444 899999999998752 1
Q ss_pred HHHHHHHhhcCCcccEEE
Q psy3611 83 ASSIAKYLTDNTTLEDVN 100 (472)
Q Consensus 83 ~~~l~~~l~~~~~L~~L~ 100 (472)
.......+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 123345566678888876
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-06 Score=82.93 Aligned_cols=184 Identities=18% Similarity=0.245 Sum_probs=109.7
Q ss_pred hhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEE
Q psy3611 219 MSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVF 298 (472)
Q Consensus 219 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L 298 (472)
..+..|.+|+.+++.+|.+...+...+ .|.+|+.+.+..+ ++..+. ..+..|++|+.+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF-------~~~~L~~l~lp~~-l~~I~~--------------~aF~~~~~L~~l 231 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTF-------VYAGIEEVLLPVT-LKEIGS--------------QAFLKTSQLKTI 231 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTT-------TTCCCSEEECCTT-CCEECT--------------TTTTTCTTCCCE
T ss_pred HHhhCcccCCeeecCCCcceEechhhE-------eecccCEEEeCCc-hheehh--------------hHhhCCCCCCEE
Confidence 456678889999998887755543333 2457888888743 432221 123446788888
Q ss_pred EcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHH-HHHhcCCC
Q psy3611 299 IAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL-GQALSKLP 377 (472)
Q Consensus 299 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~~ 377 (472)
++..+ +..-+. .+|.. .+|+.+.+.. .+...+ ..+|.++++|+.+++.++.+.......+ ..++..|+
T Consensus 232 ~l~~~-l~~I~~----~aF~~-~~L~~i~lp~-~i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 232 EIPEN-VSTIGQ----EAFRE-SGITTVKLPN-GVTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp ECCTT-CCEECT----TTTTT-CCCSEEEEET-TCCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred ecCCC-ccCccc----ccccc-CCccEEEeCC-CccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 88764 332111 12333 6788888754 333222 3466778888888887775531000000 14667788
Q ss_pred CCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 378 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+|+.+.+.. .+...+ ..++..|+.|+.+.|..+ +...+ ..++.+| +|+++.+.+|.+.
T Consensus 301 ~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~I~----~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 301 KLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQIN----FSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCEEC----TTSSSSS-CCCEEEECCSSCC
T ss_pred cCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccEEc----HHhCCCC-CCCEEEEcCCCCc
Confidence 888888874 354422 245677788888888554 33321 3456677 8888888877653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.7e-06 Score=81.22 Aligned_cols=110 Identities=21% Similarity=0.327 Sum_probs=63.0
Q ss_pred HHhhhcC-CccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCc---cCccchHHHHHHhccCCCCcEEeccCcccc
Q psy3611 4 AVFKKLK-TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNT---ITYKGAIPLGQALSKLPSLAILNLGDCLLK 79 (472)
Q Consensus 4 ~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~ 79 (472)
.+|.+|+ .|+.+.+... ++.-| ..+|.+|++|+.+.+..+. +...+. .+|..+.+|+.+.+..+ ++
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig----~~AF~~C~~L~~i~~~~n~p~~l~~Ig~----~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIG----SNAFYNCTSLKRVTIQDNKPSCVKKIGR----QAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEEC----TTTTTTCTTCCEEEEGGGCCCCCCEECT----TTTTTCTTCCBCGGGTT-CS
T ss_pred hhccCCCCcCEEEEECCC-eeEEh----HHHhhCCccCceEeecCCCCCeeeEech----hhchhcccceeeccCCc-cc
Confidence 3677775 4888888765 34322 3557788888888776542 322222 45677777777776543 22
Q ss_pred chhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 80 SAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 80 ~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
..+ ..++..+.+|+.+.+......-. ...+..+..|+.+.+..+
T Consensus 127 ~I~----~~aF~~c~~L~~i~lp~~~~~I~-----~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 127 EID----SEAFHHCEELDTVTIPEGVTSVA-----DGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp EEC----TTTTTTCTTCCEEECCTTCCEEC-----TTTTTTCTTCCEEECCTT
T ss_pred eeh----hhhhhhhcccccccccceeeeec-----ccceecccccccccccce
Confidence 221 12344567788887764322110 133456777777776543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.66 E-value=5.6e-05 Score=73.51 Aligned_cols=109 Identities=19% Similarity=0.288 Sum_probs=70.1
Q ss_pred HHhhhcCCccEEeccCCC---cchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccc
Q psy3611 4 AVFKKLKTLEHVEMPQNG---IYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 80 (472)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~---l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~ 80 (472)
.+|.+|.+|+.+.+..+. +..-| ..+|..|.+|+.+.+..+ +...+. .++..+.+|+.+.+... +..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I~~----~aF~~c~~L~~i~lp~~-~~~ 150 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEIDS----EAFHHCEELDTVTIPEG-VTS 150 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEECT----TTTTTCTTCCEEECCTT-CCE
T ss_pred HHhhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-cceehh----hhhhhhcccccccccce-eee
Confidence 479999999999997652 44322 356888999999887654 222222 46788999999999754 222
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 132 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 132 (472)
.+ ...+..+..|+.+.+..+- ..-+. .++ .+..|+.+.+...
T Consensus 151 I~----~~~F~~c~~L~~i~~~~~~-~~I~~----~aF-~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 151 VA----DGMFSYCYSLHTVTLPDSV-TAIEE----RAF-TGTALTQIHIPAK 192 (394)
T ss_dssp EC----TTTTTTCTTCCEEECCTTC-CEECT----TTT-TTCCCSEEEECTT
T ss_pred ec----ccceeccccccccccccee-eEecc----ccc-cccceeEEEECCc
Confidence 21 1334567889999987652 21111 122 2457888887654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.063 Score=51.33 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=56.3
Q ss_pred HHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHH
Q psy3611 316 VFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 395 (472)
Q Consensus 316 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~ 395 (472)
++..+..|+.+.+..+ ++..+ ..++.++..|+.+.+..+ +...+. .++..|++|+.+.+.++.+...+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~----~~aF~~~~~l~~i~l~~~-i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~-- 302 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIG----SFLLQNCTALKTLNFYAK-VKTVPY----LLCSGCSNLTKVVMDNSAIETLE-- 302 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEEC----TTTTTTCTTCCEEEECCC-CSEECT----TTTTTCTTCCEEEECCTTCCEEC--
T ss_pred cccCCccceEEEcCCC-ccEeC----ccccceeehhcccccccc-ceeccc----cccccccccccccccccccceeh--
Confidence 3445666666666553 22111 234455666666666543 332222 34556666777776666554421
Q ss_pred HHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 396 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 396 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
..++..|.+|+.+.|..+ ++..| ..++.+|++|+++.+..
T Consensus 303 --~~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 303 --PRVFMDCVKLSSVTLPTA-LKTIQ----VYAFKNCKALSTISYPK 342 (379)
T ss_dssp --TTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCCCCCCT
T ss_pred --hhhhcCCCCCCEEEcCcc-ccEEH----HHHhhCCCCCCEEEECC
Confidence 235556666777766543 22211 23455666666666643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.17 Score=48.22 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=52.0
Q ss_pred HhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHH
Q psy3611 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGAS 84 (472)
Q Consensus 5 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~ 84 (472)
+|..+.+|+.+.+..+ +..-+ ..++..+..|+.+.+..+ +...+. .++..+.+|+.+.+..+ +...+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~----~~~f~~~~~L~~i~lp~~-v~~I~~----~aF~~~~~l~~i~l~~~-i~~i~-- 278 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLG----DGAFYGMKALDEIAIPKN-VTSIGS----FLLQNCTALKTLNFYAK-VKTVP-- 278 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEEC----TTTTTTCSSCCEEEECTT-CCEECT----TTTTTCTTCCEEEECCC-CSEEC--
T ss_pred ccccccccceeeeccc-eeEEc----cccccCCccceEEEcCCC-ccEeCc----cccceeehhcccccccc-ceecc--
Confidence 4455666666666544 22211 233555666666666543 221122 34555666666666433 22211
Q ss_pred HHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecC
Q psy3611 85 SIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 131 (472)
Q Consensus 85 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 131 (472)
..++..+++|+.+.+.++.+..-+ ..++..|.+|+.+.+..
T Consensus 279 --~~aF~~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 279 --YLLCSGCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp --TTTTTTCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCT
T ss_pred --ccccccccccccccccccccceeh----hhhhcCCCCCCEEEcCc
Confidence 122334566666666555443211 13345566666666643
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.24 Score=39.26 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=14.5
Q ss_pred CCcEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEECcCC
Q psy3611 378 SLAILNLGDCLLKSAGASSIA-KYLTDNTTLEDVNLTCN 415 (472)
Q Consensus 378 ~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~L~~n 415 (472)
+++.|+|++|.|+. ++ ..+..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCc-----cChhhhhhccccCEEEecCC
Confidence 34555555554443 21 22333444444444444
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.28 Score=38.86 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=16.2
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccc
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLL 78 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l 78 (472)
+|++|+|++|.++.... ..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP----GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCT----TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccCh----hhhhhccccCEEEecCCCe
Confidence 45555555555432111 2344444555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 472 | ||||
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-23 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-12 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-12 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-12 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-10 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-11 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-10 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-09 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-09 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-08 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-06 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 5e-10 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 2e-05 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 4e-04 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 9e-04 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 5e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.003 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (249), Expect = 1e-23
Identities = 75/452 (16%), Positives = 167/452 (36%), Gaps = 7/452 (1%)
Query: 12 LEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 71
++ +++ + L ++ + + L+D +T + AL P+LA L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 72 NLGDCLLKSAGASSIAKYL-TDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVS 130
NL L G + + L T + ++ ++L ++ G L ++ L+++++S
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 131 ENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSH 190
+N G+ G++ + + + + + + + S D + + +
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 191 NDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLR 250
+ ++ Q +S R + ++ A G L
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 251 SSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGA 310
L ++ L C + + + +LK N L +EGA
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 311 KMLAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 369
++L + + + S +N+ L L +++N + G L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 370 GQALSKL-PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 428
Q L + L +L L DC + + SS+A L N +L +++L+ N + G L LV++
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 429 MK-NKTKLKQINVSENQFGEEGVEEMEKLMKS 459
++ L+Q+ + + + EE + ++ L K
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.8 bits (158), Expect = 4e-12
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 2/138 (1%)
Query: 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEEN-KNLRHLNLNDNTI 361
++V + + L +++ N + G+ L + LR L L D +
Sbjct: 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 381
Query: 362 TYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQ 420
+ L L SL L+L + L AG + + + LE + L S +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441
Query: 421 GGLDLVKAMKNKTKLKQI 438
L K+K L+ I
Sbjct: 442 MEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.0 bits (156), Expect = 7e-12
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 14 HVEMPQNGIYHVGITALSDAFEEN-KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 72
+++ N + G+ L + LR L L D ++ L L SL L+
Sbjct: 344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403
Query: 73 LGDCLLKSAGASSIAKYLTDNTT-LEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 127
L + L AG + + + LE + L S + L K+K L+ I
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.6 bits (155), Expect = 8e-12
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 350 NLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLED 409
+++ L++ ++ L L L ++ L DC L A I+ L N L +
Sbjct: 3 DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 410 VNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQF 445
+NL NE+ G +++ ++ K++++++
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (146), Expect = 1e-10
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 295 LKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENK-NLRH 353
L+V + + LAA +L +++ N + GI L ++ + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 354 LNLNDNTITYKGAIPLGQALSKLPSLAIL 382
L L D + + L PSL ++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (138), Expect = 1e-09
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 4 AVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALS 63
+ + L + + + ++L+ N LR L+L++N + G + L +++
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422
Query: 64 KLPS-LAILNLGDCLLKSAGASSIAKYLTDNTTL 96
+ L L L D + D +L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (134), Expect = 3e-09
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQA 61
A + L+ + V + G+ +S A N L LNL N + G + Q
Sbjct: 19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78
Query: 62 L-SKLPSLAILNLGDC 76
L + + L+L +C
Sbjct: 79 LQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (129), Expect = 1e-08
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 189 SHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADL 248
S + + Q NN + + G+ L L L+D LA
Sbjct: 333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392
Query: 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENE 308
L + +L EL L+NN LG G L +++ L+ + E
Sbjct: 393 LLA--NHSLRELDLSNNCLGDAGILQLVESVRQ---------PGCLLEQLVLYDIYWSEE 441
Query: 309 GAKMLAAVFKKLKTL 323
L A+ K +L
Sbjct: 442 MEDRLQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (121), Expect = 1e-07
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENK-KLRHLNLNDNTITYKGAIPLGQ 60
LAA +L +++ N + GI L ++ + L L L D + + L
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448
Query: 61 ALSKLPSLAIL 71
PSL ++
Sbjct: 449 LEKDKPSLRVI 459
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 63.0 bits (151), Expect = 2e-11
Identities = 61/381 (16%), Positives = 113/381 (29%), Gaps = 44/381 (11%)
Query: 95 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA 154
++E +L + I+ + + + +K+I +S N G E + + + S
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 155 LVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTS 214
D +E E A L + + + +
Sbjct: 64 AEFSDIFTGRVKDEIPEA--LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121
Query: 215 NQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKL 274
H+ L + + N L K
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR----SIICGRNRLENGSMKE 177
Query: 275 LSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334
+K + +L + L+ +++ N
Sbjct: 178 WAKTFQSHRLLHTVKMVQ---------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 228
Query: 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 394
H+G +AL+ A + NLR L LND ++ +GA + A SKL
Sbjct: 229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE----------------- 271
Query: 395 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEG--VE 451
N L+ + L NEI + L + K L + ++ N+F EE V+
Sbjct: 272 ---------NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322
Query: 452 EMEKLMKSFGMAAALVLEDDE 472
E+ ++ + G L+D E
Sbjct: 323 EIREVFSTRGRGELDELDDME 343
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 58.0 bits (138), Expect = 7e-10
Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 24/335 (7%)
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 126
S+ +L + + S+ L ++ +++++ L+ N I + L + + +K L+
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 127 INVSENQ---FGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEG 183
S+ +E E + L+++ L E +
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 184 DNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVE 243
++ L +N A + + + + N ++
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-------RSIICGRNRLENGSMK 176
Query: 244 GLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303
+ + L + + L + ++ LKV N
Sbjct: 177 -----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------LKVLDLQDN 225
Query: 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSD--AFEENKNLRHLNLNDNTI 361
+ G+ LA K L + + + G A+ D + EN L+ L L N I
Sbjct: 226 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 285
Query: 362 TYKGAIPLGQAL-SKLPSLAILNLGDCLLKSAGAS 395
L + K+P L L L
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 57.2 bits (136), Expect = 1e-09
Identities = 55/358 (15%), Positives = 107/358 (29%), Gaps = 28/358 (7%)
Query: 11 TLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAI 70
++E + + I ++ E+ ++ + L+ NTI + A L + ++ L I
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 71 LNLGDCLLKSAGA------SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
D + + L L V L+ N L+ + T L
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
+ + + N G + ++ + ++ + + N +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKA--------KNAPPLRSIICGRNRLENGSM 175
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
S+ + N + L L LDL DN F +G
Sbjct: 176 KEWAKTFQSHRLLHTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 234
Query: 245 LADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304
LA L EL LN+ L G + A + L+ N
Sbjct: 235 LAI--ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL--------ENIGLQTLRLQYNE 284
Query: 305 LENEGAKMLA-AVFKKLKTLERVEMPQNGIYHVG--ITALSDAFEENKNLRHLNLNDN 359
+E + + L + +K+ L +E+ N + + + F L+D
Sbjct: 285 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 342
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 54.9 bits (130), Expect = 7e-09
Identities = 51/353 (14%), Positives = 102/353 (28%), Gaps = 32/353 (9%)
Query: 40 LRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDV 99
+ +L + IT + + L + S+ + L + + A +++ + LE
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 100 NLTCNEISVQGGL------DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 153
+ L++A+ KL + +S+N FG E + +
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNT 213
L L + Q + + + N+ N S +
Sbjct: 125 HLYLHN----NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 214 SNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCK 273
+ QSH L T + + L E L + +
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEG-----------------IEHLLLEGLAYCQELKVLDLQ 223
Query: 274 LLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLK--TLERVEMPQN 331
+ + S L+ L GA + F KL+ L+ + + N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283
Query: 332 GIYHVGITALSDAFEEN-KNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383
I + L +E +L L LN N + + + + ++ S
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV--DEIREVFSTRGRG 334
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 51.8 bits (122), Expect = 7e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 72 NLGDCLLKSAGASSIAKYLT--DNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQIN 128
L DCLL + GA+++ + +N L+ + L NEI + L + K L +
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 129 VSENQFGEEG--VEEMEKLMKSFGMAAALVLEDDE 161
++ N+F EE V+E+ ++ + G L+D E
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 45.6 bits (106), Expect = 7e-06
Identities = 50/313 (15%), Positives = 88/313 (28%), Gaps = 34/313 (10%)
Query: 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAI----- 56
+ AV + +++ + + N I LS+ K L +D
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82
Query: 57 -PLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGL--- 112
L QAL K P L + L D + +L+ +T LE + L N + Q G
Sbjct: 83 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142
Query: 113 ------DLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSD 166
+ K KN L+ I N+ ++E K +S + + + +
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202
Query: 167 EEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQS------------HNNSNQSHNTS 214
E + + + + S + + +
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262
Query: 215 NQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGC-- 272
S L L L N V L ++ L L+LN N
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGNRFSEEDDVV 321
Query: 273 ----KLLSKALHD 281
++ S
Sbjct: 322 DEIREVFSTRGRG 334
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (134), Expect = 5e-10
Identities = 21/170 (12%), Positives = 58/170 (34%), Gaps = 17/170 (10%)
Query: 242 VEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300
VE + LR L+E+ +NN + + L +A + + F
Sbjct: 3 VESCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHI----------EKFSL 51
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
+ + A+ L + + +L + + N + + L + +++ ++
Sbjct: 52 ANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111
Query: 361 ITY---KGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
+ + + + A+ + SL + + + +++ L N
Sbjct: 112 QSVLGNQVEMDMMMAIEENESLLRVGISFASM--EARHRVSEALERNYER 159
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 14/122 (11%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 29 ALSDAFEENKKLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 87
++ E++ L+ +N+N+ ++ + L +A + +L + + + A +
Sbjct: 6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 65
Query: 88 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 147
+ + + +L +N+ N ++ + L+++ + + + G + +M
Sbjct: 66 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 125
Query: 148 SF 149
+
Sbjct: 126 AI 127
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 7/86 (8%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 14 HVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITY---KGAIPLGQALSKLPSLAI 70
+ + N + + L + + + ++ + + + + A+ + SL
Sbjct: 76 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 135
Query: 71 LNLGDCLLKSAGASSIAKYLTDNTTL 96
+ + + +++ L N
Sbjct: 136 VGISFASM--EARHRVSEALERNYER 159
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (87), Expect = 9e-04
Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 16/151 (10%)
Query: 221 LKTGARLVELDLSD-NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKAL 279
+ L E+++++ + L + +S E+ L N + + + L + +
Sbjct: 11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI--EKFSLANTAISDSEARGLIELI 68
Query: 280 HDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVG-- 337
+V N L E L +++ + +G
Sbjct: 69 ETSPSL----------RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 118
Query: 338 -ITALSDAFEENKNLRHLNLNDNTITYKGAI 367
+ A EEN++L + ++ ++ + +
Sbjct: 119 VEMDMMMAIEENESLLRVGISFASMEARHRV 149
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.6 bits (96), Expect = 5e-05
Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 239 PIGVEGLADLLRSSCCFALEELKLNN-NGLGITGCKLLSKALHDCYESSKKEGSPLALKV 297
VE ++++ LEE+ LNN + + K ++AL +K
Sbjct: 2 STDVEETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTN----------TYVKK 50
Query: 298 FIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLN-- 355
F R + A LA + K TL+ + + N I GI AL +A + N +L L
Sbjct: 51 FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID 110
Query: 356 LNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTL 407
+ + + L K +L + + +N L
Sbjct: 111 NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 160
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 60/386 (15%), Positives = 113/386 (29%), Gaps = 50/386 (12%)
Query: 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLP 66
L + ++ + GI + D E L +N ++N +T PL L
Sbjct: 41 TDLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLT--DITPLKN----LT 88
Query: 67 SLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQ 126
L + + + + + LT T + + + L+ ++ N
Sbjct: 89 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148
Query: 127 INVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNS 186
+ +K L D + +S +N
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN- 207
Query: 187 NLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLA 246
+S ++ N NQ + + ++ L +LDL++N ++
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKDIGTLASLT-----NLTDLDLANNQ--------IS 254
Query: 247 DLLRSSCCFALEELKLNNNGL-GITGCKLLSKAL-----HDCYESSKKEGSPLALKVFIA 300
+L S L ELKL N + I+ L+ + E + L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314
Query: 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNT 360
N + + L L+R+ N + V + N+ L+ N
Sbjct: 315 YFNNISDISP------VSSLTKLQRLFFANNKVSDV------SSLANLTNINWLSAGHNQ 362
Query: 361 ITYKGAIPLGQALSKLPSLAILNLGD 386
I+ PL L + L L D
Sbjct: 363 IS--DLTPLAN----LTRITQLGLND 382
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.3 bits (85), Expect = 0.003
Identities = 42/263 (15%), Positives = 82/263 (31%), Gaps = 28/263 (10%)
Query: 5 VFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK 64
FK LK L + + N I + AF KL L L+ N + +P +
Sbjct: 50 DFKNLKNLHTLILINNKISKI----SPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTL 102
Query: 65 LPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKL 124
N + KS + L +E ++ G A + KL
Sbjct: 103 QELRVHENEITKVRKS-----VFNGLNQMIVVELGTNPLKSSGIENG-----AFQGMKKL 152
Query: 125 KQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGD 184
I +++ L + L L+ + D S + ++ A+
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTE-------LHLDG----NKITKVDAASLKGLNNLAKLG 201
Query: 185 NSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEG 244
S S + ++ A+ + ++N + L + + L +N IG
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 245 LADLLRSSCCFALEELKLNNNGL 267
++ + + L +N +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPV 284
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 100.0 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 100.0 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.96 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.85 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.73 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.72 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.65 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.64 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.62 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.62 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.62 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.6 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.58 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.54 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.53 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.47 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.46 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.45 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.34 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.31 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.25 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.17 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.12 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.1 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.0 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.98 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.92 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.89 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.82 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.64 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.53 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.48 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.43 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.2 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.15 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-34 Score=284.25 Aligned_cols=430 Identities=17% Similarity=0.209 Sum_probs=300.7
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
++|+.||++++.+++.++..+. ..+++++.|+|.+|.+++.+...++.++..+++|++|+|++|.+++.++..+++.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~---~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~ 78 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHH---HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CCCCEEEeeCCcCChHHHHHHH---HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence 4789999999999997765544 4458889999999999988888888999999999999999999999888888887
Q ss_pred hhcC-CcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHH-hhhccCCCCCCcc
Q psy3611 90 LTDN-TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAA-LVLEDDEGECSDE 167 (472)
Q Consensus 90 l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~-L~~~~~~~~~~~~ 167 (472)
+... .+|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+........ ...... ......
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~ 157 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAAS 157 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccc-ccchhh
Confidence 7643 5799999999999999998999999999999999999999988877777665433211100 000000 000000
Q ss_pred ccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHH
Q psy3611 168 EQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLAD 247 (472)
Q Consensus 168 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 247 (472)
..... ........+....+... .......................+.+..+.+...+...+..
T Consensus 158 ~~~~~-------~~l~~~~~~~~~~ls~~----------~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (460)
T d1z7xw1 158 CEPLA-------SVLRAKPDFKELTVSNN----------DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220 (460)
T ss_dssp HHHHH-------HHHHHCTTCCEEECCSS----------BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred hcccc-------ccccccccccccccccc----------ccccccccccccccccccccccccccccccccchhhhcccc
Confidence 00000 00000000000000000 00000011122222334456778888888887666666666
Q ss_pred HHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEe
Q psy3611 248 LLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVE 327 (472)
Q Consensus 248 ~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~ 327 (472)
.+... +.++.++++++.+.+.+.......... ....++.+++++|.+.......+..++..++.++.++
T Consensus 221 ~l~~~--~~~~~l~~~~n~~~~~~~~~~~~~~~~---------~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~ 289 (460)
T d1z7xw1 221 IVASK--ASLRELALGSNKLGDVGMAELCPGLLH---------PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 289 (460)
T ss_dssp HHHHC--TTCCEEECCSSBCHHHHHHHHHHHHTS---------TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccccc--ccccccchhhccccccccchhhccccc---------ccccccccccccccccccccccccccccccccccccc
Confidence 55433 468888888887766555443333222 1357888888888888777666777777788888888
Q ss_pred CCCCCCChhHHHHHHHHHhc-CCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhc-CC
Q psy3611 328 MPQNGIYHVGITALSDAFEE-NKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD-NT 405 (472)
Q Consensus 328 l~~~~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~ 405 (472)
+++|.+++.++..+...+.. ...|+.++++++.++++++..++..+..+++|++|++++|.+++.|+..++..+.. ++
T Consensus 290 l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~ 369 (460)
T d1z7xw1 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 369 (460)
T ss_dssp CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred cccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccC
Confidence 88888888777777776654 45688888888888877777777777777888888888888888777777777753 57
Q ss_pred CCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCC-ceeEEecCCC
Q psy3611 406 TLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFG-MAAALVLEDD 471 (472)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~~ 471 (472)
.|+.|+|++|.|++.|+..++.++..+++|++|++++|+|++.|+..+.+.++... .|+.|++.++
T Consensus 370 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~ 436 (460)
T d1z7xw1 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436 (460)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence 78888888888888888888888888888888888888888888888888777666 5888887654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=279.47 Aligned_cols=436 Identities=21% Similarity=0.270 Sum_probs=336.7
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhcc-CCCCcEEeccCccccc
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKS 80 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~-~~~L~~L~ls~~~l~~ 80 (472)
+.+.++.+++++.|+|++|.+++.++..++..+..+++|++|||++|.+++.+...++..+.. ..+|++|++++|.+++
T Consensus 19 ~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~ 98 (460)
T d1z7xw1 19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98 (460)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence 467788999999999999999999999999999999999999999999987777777666654 3589999999999999
Q ss_pred hhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhC-CCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhcc
Q psy3611 81 AGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNK-TKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLED 159 (472)
Q Consensus 81 ~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~ 159 (472)
.++..+++.+..+++|++|++++|.+++.++..+...+... ............+.......+...+..++.++.+....
T Consensus 99 ~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~ 178 (460)
T d1z7xw1 99 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178 (460)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred cccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccc
Confidence 99999999999999999999999999988877777766433 34555566666666666666666666555554333222
Q ss_pred CCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCCh
Q psy3611 160 DEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGP 239 (472)
Q Consensus 160 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 239 (472)
...... .+... ....... ...... ......... ..........+..++.++.+.+.++.+..
T Consensus 179 ~~~~~~-~~~~~-~~~l~~~-----~~~~~~----------l~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 179 NDINEA-GVRVL-CQGLKDS-----PCQLEA----------LKLESCGVT-SDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp SBCHHH-HHHHH-HHHHHHS-----CCCCCE----------EECTTSCCB-TTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred cccccc-ccccc-ccccccc-----cccccc----------ccccccccc-chhhhcccccccccccccccchhhccccc
Confidence 211000 00000 0000000 000000 000000000 01112233345567899999999999866
Q ss_pred hhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhc
Q psy3611 240 IGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKK 319 (472)
Q Consensus 240 ~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 319 (472)
.+......... ..++.++.+++++|.+.......+...+... +.++.+++++|.+.+.|...+...+..
T Consensus 241 ~~~~~~~~~~~-~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~----------~~l~~l~l~~n~i~~~~~~~l~~~l~~ 309 (460)
T d1z7xw1 241 VGMAELCPGLL-HPSSRLRTLWIWECGITAKGCGDLCRVLRAK----------ESLKELSLAGNELGDEGARLLCETLLE 309 (460)
T ss_dssp HHHHHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHC----------TTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred cccchhhcccc-ccccccccccccccccccccccccccccccc----------ccccccccccccccccccchhhccccc
Confidence 65544443333 2346899999999999988888888777764 679999999999999998888877664
Q ss_pred -CCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcC-CCCCcEEEcCCCCCChHHHHHH
Q psy3611 320 -LKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSK-LPSLAILNLGDCLLKSAGASSI 397 (472)
Q Consensus 320 -~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~i~~~~~~~l 397 (472)
...|+.+++++|.+++.++..++..+..+++|++|++++|.++++|+..+++.+.. .+.|++|++++|.+++.|+..+
T Consensus 310 ~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l 389 (460)
T d1z7xw1 310 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 389 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred cccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence 45899999999999999999999999999999999999999999898888888864 6789999999999999999999
Q ss_pred HHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCC-cccEEEccCCCCChhHHHHHHHHHHhCCceeEE
Q psy3611 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKT-KLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 398 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 466 (472)
+..+..+++|++|+|++|.|+++|+..+.+.+.... .|+.|++.++.+..+....+.+..+.+|+|+.|
T Consensus 390 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 999999999999999999999999999999997655 799999999999999999999999999999987
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.96 E-value=7.6e-28 Score=230.37 Aligned_cols=320 Identities=31% Similarity=0.438 Sum_probs=249.6
Q ss_pred cccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh---hhHHHHHHHHHhchhhH
Q psy3611 77 LLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE---EGVEEMEKLMKSFGMAA 153 (472)
Q Consensus 77 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~---~~~~~l~~~l~~~~~l~ 153 (472)
.++.+....+...+..+..|+.|+|++|.++++++..+...+...++|+.++++++..+. ..+..+....
T Consensus 14 ~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~------- 86 (344)
T d2ca6a1 14 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL------- 86 (344)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHH-------
Confidence 455555666666677777788888888888777777777777777788888877664331 1111111110
Q ss_pred HhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCC
Q psy3611 154 ALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLS 233 (472)
Q Consensus 154 ~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 233 (472)
..+..++.|++|+++
T Consensus 87 -----------------------------------------------------------------~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 87 -----------------------------------------------------------------QALLKCPKLHTVRLS 101 (344)
T ss_dssp -----------------------------------------------------------------HHHTTCTTCCEEECC
T ss_pred -----------------------------------------------------------------HHHhhCCCccccccc
Confidence 112345788889998
Q ss_pred CCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHH
Q psy3611 234 DNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKML 313 (472)
Q Consensus 234 ~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 313 (472)
+|.+++.++..++..+.. +++|++|++++|.+++.+...+++++....... .....+.|+.++++++.+.+.++..+
T Consensus 102 ~n~i~~~~~~~l~~~l~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~-~~~~~~~L~~l~l~~n~i~~~~~~~l 178 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNK-KAKNAPPLRSIICGRNRLENGSMKEW 178 (344)
T ss_dssp SCCCCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH-HHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ccccccccccchhhhhcc--cccchheeccccccccccccccccccccccccc-ccccCcccceeecccccccccccccc
Confidence 888888888888887763 458999999999888888877777665432110 11124679999999999999999999
Q ss_pred HHHHhcCCCccEEeCCCCCCChhHHHH-HHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChH
Q psy3611 314 AAVFKKLKTLERVEMPQNGIYHVGITA-LSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 392 (472)
Q Consensus 314 ~~~~~~~~~L~~L~l~~~~i~~~~~~~-l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~ 392 (472)
..++..+++|+.|++++|.+++.|+.. +.+.+..+++|+.|++++|.+++.|+..++..+..++.|++|++++|.+++.
T Consensus 179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~ 258 (344)
T d2ca6a1 179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 258 (344)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence 999999999999999999999987654 5667888999999999999999989889999999999999999999999999
Q ss_pred HHHHHHHHhhc--CCCCCEEECcCCCCCchhHHHHHHHHh-cCCcccEEEccCCCCChh--HHHHHHHHHHhCCceeEEe
Q psy3611 393 GASSIAKYLTD--NTTLEDVNLTCNEISVQGGLDLVKAMK-NKTKLKQINVSENQFGEE--GVEEMEKLMKSFGMAAALV 467 (472)
Q Consensus 393 ~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~~~L~~L~ 467 (472)
|+..+..++.. ++.|+.|++++|.|+++|+..+...+. +++.|++|++++|+++.. ....+...+.....-+.-+
T Consensus 259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (344)
T d2ca6a1 259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 338 (344)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHHHHHHHHccCCCCCc
Confidence 99999998875 478999999999999999999999996 678999999999998654 4566777777766655555
Q ss_pred cCCC
Q psy3611 468 LEDD 471 (472)
Q Consensus 468 l~~~ 471 (472)
++..
T Consensus 339 ~~~~ 342 (344)
T d2ca6a1 339 LDDM 342 (344)
T ss_dssp CCSC
T ss_pred cccc
Confidence 5544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.95 E-value=1.9e-26 Score=220.52 Aligned_cols=295 Identities=20% Similarity=0.259 Sum_probs=192.7
Q ss_pred CCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCcccc------chhHHHHHHHhhcC
Q psy3611 20 NGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLK------SAGASSIAKYLTDN 93 (472)
Q Consensus 20 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~------~~~~~~l~~~l~~~ 93 (472)
+.++..++..+...+.++..|++|+|++|.+++.+...++..+...++|+.++++++... ..+...+.+.+..+
T Consensus 13 ~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 92 (344)
T d2ca6a1 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 92 (344)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC
Confidence 455777777777888888889999999988888888888888888889999998876432 23455667777778
Q ss_pred CcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhh
Q psy3611 94 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEES 173 (472)
Q Consensus 94 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~ 173 (472)
++|+.|++++|.+++.++..+...+..+++|++|++++|.++..+...++..+......
T Consensus 93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~--------------------- 151 (344)
T d2ca6a1 93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN--------------------- 151 (344)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHH---------------------
T ss_pred CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccc---------------------
Confidence 88888888888888888888888888888888888888888777766666654322100
Q ss_pred hcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccC
Q psy3611 174 EEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSC 253 (472)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~ 253 (472)
......+.|+.+.++++.+++.+...++..++..
T Consensus 152 ---------------------------------------------~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~- 185 (344)
T d2ca6a1 152 ---------------------------------------------KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH- 185 (344)
T ss_dssp ---------------------------------------------HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-
T ss_pred ---------------------------------------------cccccCcccceeecccccccccccccccchhhhh-
Confidence 0011234566666666666555555555555422
Q ss_pred CCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCC
Q psy3611 254 CFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 333 (472)
Q Consensus 254 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 333 (472)
+.+++|++++|.+++.+...+ +...+..+++|++|++++|.+
T Consensus 186 -~~L~~L~L~~n~i~~~g~~~~-------------------------------------l~~~l~~~~~L~~L~Ls~N~i 227 (344)
T d2ca6a1 186 -RLLHTVKMVQNGIRPEGIEHL-------------------------------------LLEGLAYCQELKVLDLQDNTF 227 (344)
T ss_dssp -TTCCEEECCSSCCCHHHHHHH-------------------------------------HHTTGGGCTTCCEEECCSSCC
T ss_pred -hhhcccccccccccccccccc-------------------------------------hhhhhcchhhhcccccccccc
Confidence 355555555555554443221 223344555666666666666
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC--CCCcEEEcCCCCCChHHHHHHHHHhh-cCCCCCEE
Q psy3611 334 YHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL--PSLAILNLGDCLLKSAGASSIAKYLT-DNTTLEDV 410 (472)
Q Consensus 334 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--~~L~~L~l~~~~i~~~~~~~l~~~l~-~~~~L~~L 410 (472)
++.|+..++.++..+++|++|++++|.++++|+..+++++... +.|++|++++|.|+++|+..+..++. +.+.|+.|
T Consensus 228 ~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L 307 (344)
T d2ca6a1 228 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307 (344)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred cccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEE
Confidence 6656556666666666666666666666666666666655542 35666666666666666666666554 45666666
Q ss_pred ECcCCCCCc
Q psy3611 411 NLTCNEISV 419 (472)
Q Consensus 411 ~L~~n~i~~ 419 (472)
+|++|.+..
T Consensus 308 ~l~~N~~~~ 316 (344)
T d2ca6a1 308 ELNGNRFSE 316 (344)
T ss_dssp ECTTSBSCT
T ss_pred ECCCCcCCC
Confidence 666666644
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.85 E-value=5.2e-21 Score=185.00 Aligned_cols=191 Identities=23% Similarity=0.258 Sum_probs=150.2
Q ss_pred hhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEc
Q psy3611 221 LKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIA 300 (472)
Q Consensus 221 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l 300 (472)
...+++++.+.+++|.+...... ..+++|++|++++|.+++.+ .+..+++|+.+++
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~~--------~~~~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~l 248 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITPL--------GILTNLDELSLNGNQLKDIG----------------TLASLTNLTDLDL 248 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGG--------GGCTTCCEEECCSSCCCCCG----------------GGGGCTTCSEEEC
T ss_pred cccccccceeeccCCccCCCCcc--------cccCCCCEEECCCCCCCCcc----------------hhhcccccchhcc
Confidence 34568899999999988654311 23568999999999987542 1233578999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCc
Q psy3611 301 GRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 301 ~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 380 (472)
++|.+.+. + .+..+++|++|+++++++... ..+..++.++.+++.+|.+.. . ..+..+++++
T Consensus 249 ~~n~l~~~-----~-~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~l~~l~~~~n~l~~--~----~~~~~~~~l~ 310 (384)
T d2omza2 249 ANNQISNL-----A-PLSGLTKLTELKLGANQISNI------SPLAGLTALTNLELNENQLED--I----SPISNLKNLT 310 (384)
T ss_dssp CSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCSC--C----GGGGGCTTCS
T ss_pred ccCccCCC-----C-cccccccCCEeeccCcccCCC------Ccccccccccccccccccccc--c----cccchhcccC
Confidence 99998863 2 256789999999999998732 236678899999999999873 2 3467789999
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC
Q psy3611 381 ILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 460 (472)
Q Consensus 381 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 460 (472)
.|++++|.+.+ ++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++++.. .+..+
T Consensus 311 ~L~ls~n~l~~-----l~-~l~~l~~L~~L~L~~n~l~~-----l~-~l~~l~~L~~L~l~~N~l~~l~------~l~~l 372 (384)
T d2omza2 311 YLTLYFNNISD-----IS-PVSSLTKLQRLFFANNKVSD-----VS-SLANLTNINWLSAGHNQISDLT------PLANL 372 (384)
T ss_dssp EEECCSSCCSC-----CG-GGGGCTTCCEEECCSSCCCC-----CG-GGGGCTTCCEEECCSSCCCBCG------GGTTC
T ss_pred eEECCCCCCCC-----Cc-ccccCCCCCEEECCCCCCCC-----Ch-hHcCCCCCCEEECCCCcCCCCh------hhccC
Confidence 99999999986 32 36788999999999999987 33 5888999999999999987532 26679
Q ss_pred CceeEEecCCC
Q psy3611 461 GMAAALVLEDD 471 (472)
Q Consensus 461 ~~L~~L~l~~~ 471 (472)
++|+.|++++|
T Consensus 373 ~~L~~L~L~~N 383 (384)
T d2omza2 373 TRITQLGLNDQ 383 (384)
T ss_dssp TTCSEEECCCE
T ss_pred CCCCEeeCCCC
Confidence 99999999875
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=1.8e-18 Score=166.79 Aligned_cols=331 Identities=22% Similarity=0.267 Sum_probs=215.7
Q ss_pred hhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHH
Q psy3611 7 KKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 86 (472)
Q Consensus 7 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l 86 (472)
+.+.+|++|+++++.|+. + +.+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+.
T Consensus 41 ~~l~~l~~L~l~~~~I~~-----l-~gl~~L~nL~~L~Ls~N~l~~l---~---~l~~L~~L~~L~L~~n~i~~i----- 103 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKS-----I-DGVEYLNNLTQINFSNNQLTDI---T---PLKNLTKLVDILMNNNQIADI----- 103 (384)
T ss_dssp HHHTTCCEEECCSSCCCC-----C-TTGGGCTTCCEEECCSSCCCCC---G---GGTTCTTCCEEECCSSCCCCC-----
T ss_pred HHhCCCCEEECCCCCCCC-----c-cccccCCCCCEEeCcCCcCCCC---c---cccCCcccccccccccccccc-----
Confidence 356789999999999885 2 3577889999999999998632 2 378899999999999999863
Q ss_pred HHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHH------------HHHhchhhHH
Q psy3611 87 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK------------LMKSFGMAAA 154 (472)
Q Consensus 87 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~------------~l~~~~~l~~ 154 (472)
+ .++.+++|+.|+++++.+++... ......+..+....+.+.......... ..........
T Consensus 104 ~-~l~~l~~L~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (384)
T d2omza2 104 T-PLANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176 (384)
T ss_dssp G-GGTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTT
T ss_pred c-ccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence 2 26778999999999998886321 122333344433322211100000000 0000001111
Q ss_pred hhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCC
Q psy3611 155 LVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSD 234 (472)
Q Consensus 155 L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 234 (472)
............... ......++..+.+. ++. ..... ....+++|++|++++
T Consensus 177 ~~~~~~~~~~~~~~~-----------~~~~l~~~~~l~l~----------~n~-----i~~~~--~~~~~~~L~~L~l~~ 228 (384)
T d2omza2 177 LERLDISSNKVSDIS-----------VLAKLTNLESLIAT----------NNQ-----ISDIT--PLGILTNLDELSLNG 228 (384)
T ss_dssp CCEEECCSSCCCCCG-----------GGGGCTTCSEEECC----------SSC-----CCCCG--GGGGCTTCCEEECCS
T ss_pred ccccccccccccccc-----------ccccccccceeecc----------CCc-----cCCCC--cccccCCCCEEECCC
Confidence 111111000000000 00011111111110 000 00111 134468999999999
Q ss_pred CCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHH
Q psy3611 235 NAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLA 314 (472)
Q Consensus 235 ~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 314 (472)
|.+...+ .+ ..+++|+.|++++|.+++.. .++.+++|+.|+++++.+... +
T Consensus 229 n~l~~~~--~l------~~l~~L~~L~l~~n~l~~~~----------------~~~~~~~L~~L~l~~~~l~~~-----~ 279 (384)
T d2omza2 229 NQLKDIG--TL------ASLTNLTDLDLANNQISNLA----------------PLSGLTKLTELKLGANQISNI-----S 279 (384)
T ss_dssp SCCCCCG--GG------GGCTTCSEEECCSSCCCCCG----------------GGTTCTTCSEEECCSSCCCCC-----G
T ss_pred CCCCCcc--hh------hcccccchhccccCccCCCC----------------cccccccCCEeeccCcccCCC-----C
Confidence 9986542 11 23578999999999987432 134468999999999998752 2
Q ss_pred HHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHH
Q psy3611 315 AVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGA 394 (472)
Q Consensus 315 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~ 394 (472)
.+..+..++.+.+..|.+... ..+..+++++.|++++|.+.+ . ..+..+++|++|++++|.+++
T Consensus 280 -~~~~~~~l~~l~~~~n~l~~~------~~~~~~~~l~~L~ls~n~l~~--l----~~l~~l~~L~~L~L~~n~l~~--- 343 (384)
T d2omza2 280 -PLAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISD--I----SPVSSLTKLQRLFFANNKVSD--- 343 (384)
T ss_dssp -GGTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSSCCSC--C----GGGGGCTTCCEEECCSSCCCC---
T ss_pred -ccccccccccccccccccccc------cccchhcccCeEECCCCCCCC--C----cccccCCCCCEEECCCCCCCC---
Confidence 356788999999999998742 246778999999999999984 2 236789999999999999986
Q ss_pred HHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCC
Q psy3611 395 SSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN 443 (472)
Q Consensus 395 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 443 (472)
++ .+..+++|+.|++++|.+++ ++ .+.++++|++|++++|
T Consensus 344 --l~-~l~~l~~L~~L~l~~N~l~~-----l~-~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 344 --VS-SLANLTNINWLSAGHNQISD-----LT-PLANLTRITQLGLNDQ 383 (384)
T ss_dssp --CG-GGGGCTTCCEEECCSSCCCB-----CG-GGTTCTTCSEEECCCE
T ss_pred --Ch-hHcCCCCCCEEECCCCcCCC-----Ch-hhccCCCCCEeeCCCC
Confidence 43 57889999999999999987 33 3889999999999987
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.1e-16 Score=144.42 Aligned_cols=109 Identities=10% Similarity=0.185 Sum_probs=55.1
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
+++|++++.+..+.+. ..+. ..+..+.+....... .. .......+|++|++++|.++.. .+...+..
T Consensus 3 ~~lDLs~~~l~~~~l~---~l~~--~~~~~lrl~~~~~~~--~~---~~~~~~~~L~~LdLs~~~i~~~---~l~~l~~~ 69 (284)
T d2astb2 3 QTLDLTGKNLHPDVTG---RLLS--QGVIAFRCPRSFMDQ--PL---AEHFSPFRVQHMDLSNSVIEVS---TLHGILSQ 69 (284)
T ss_dssp SEEECTTCBCCHHHHH---HHHH--TTCSEEECTTCEECS--CC---CSCCCCBCCCEEECTTCEECHH---HHHHHHTT
T ss_pred CEEECCCCCCCchHHH---HHHh--ccceEeecccccccc--ch---hhhccCCCCCEEECCCCccCHH---HHHHHHHh
Confidence 3677777766543322 2221 134445554443211 00 0112334666777776666554 23333455
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCC-cCChhh
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSEN-QFGEEG 138 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~i~~~~ 138 (472)
+++|++|++++|.+++ ..+..+..+++|++|++++| .+++.+
T Consensus 70 c~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~Ls~c~~itd~~ 112 (284)
T d2astb2 70 CSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSEFA 112 (284)
T ss_dssp BCCCSEEECTTCBCCH----HHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred CCCcccccccccCCCc----HHHHHHhcCCCCcCccccccccccccc
Confidence 6666777776666665 33444555666666666664 454433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.6e-16 Score=146.30 Aligned_cols=201 Identities=15% Similarity=0.193 Sum_probs=145.5
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC-
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN- 303 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~- 303 (472)
.+|++|+++++.++...+..+. ..|++|++|++++|.+++.+...+++ +++|++|+++++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~-----~~c~~L~~L~L~~~~l~~~~~~~l~~--------------~~~L~~L~Ls~c~ 106 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGIL-----SQCSKLQNLSLEGLRLSDPIVNTLAK--------------NSNLVRLNLSGCS 106 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHH-----TTBCCCSEEECTTCBCCHHHHHHHTT--------------CTTCSEEECTTCB
T ss_pred CCCCEEECCCCccCHHHHHHHH-----HhCCCcccccccccCCCcHHHHHHhc--------------CCCCcCccccccc
Confidence 5889999999888776655543 35789999999999988777666532 478999999985
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCC--CCCcccHHHHHHHhcCCCCCc
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDN--TITYKGAIPLGQALSKLPSLA 380 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n--~l~~~~~~~l~~~l~~~~~L~ 380 (472)
.+++.|+.. ....+++|++|++++| .+++.++..... ...+.|+.|+++++ .+++.+.. .....+|+|+
T Consensus 107 ~itd~~l~~---l~~~~~~L~~L~ls~c~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~i~~~~l~---~l~~~~~~L~ 178 (284)
T d2astb2 107 GFSEFALQT---LLSSCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLV 178 (284)
T ss_dssp SCCHHHHHH---HHHHCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCS
T ss_pred cccccccch---hhHHHHhccccccccccccccccchhhhc--ccccccchhhhccccccccccccc---cccccccccc
Confidence 677665443 3457899999999986 577665433222 23468999999875 45554443 3445688999
Q ss_pred EEEcCCCC-CChHHHHHHHHHhhcCCCCCEEECcCC-CCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHH
Q psy3611 381 ILNLGDCL-LKSAGASSIAKYLTDNTTLEDVNLTCN-EISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMK 458 (472)
Q Consensus 381 ~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~ 458 (472)
+|++++|. +++.+ ...+..+++|+.|++++| .+++.+ ...+.++++|++|+++++ +++.+...+.+.
T Consensus 179 ~L~L~~~~~itd~~----~~~l~~~~~L~~L~L~~C~~i~~~~----l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~-- 247 (284)
T d2astb2 179 HLDLSDSVMLKNDC----FQEFFQLNYLQHLSLSRCYDIIPET----LLELGEIPTLKTLQVFGI-VPDGTLQLLKEA-- 247 (284)
T ss_dssp EEECTTCTTCCGGG----GGGGGGCTTCCEEECTTCTTCCGGG----GGGGGGCTTCCEEECTTS-SCTTCHHHHHHH--
T ss_pred ccccccccCCCchh----hhhhcccCcCCEEECCCCCCCChHH----HHHHhcCCCCCEEeeeCC-CCHHHHHHHHHh--
Confidence 99998874 66653 345567899999999986 688765 344667899999999988 777777766654
Q ss_pred hCCcee
Q psy3611 459 SFGMAA 464 (472)
Q Consensus 459 ~~~~L~ 464 (472)
+|.|+
T Consensus 248 -lp~L~ 252 (284)
T d2astb2 248 -LPHLQ 252 (284)
T ss_dssp -STTSE
T ss_pred -Ccccc
Confidence 55554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.65 E-value=1.1e-19 Score=170.65 Aligned_cols=251 Identities=21% Similarity=0.238 Sum_probs=157.2
Q ss_pred CCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccC-ccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHH
Q psy3611 39 KLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGD-CLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117 (472)
Q Consensus 39 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~-~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 117 (472)
.+++|+|+++.+.....+| ..+.++++|++|+|++ |.+.+ .+|..++++++|++|++++|.+... .+..
T Consensus 51 ~v~~L~L~~~~l~g~~~lp--~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l~~~----~~~~ 120 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGA----IPDF 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECC--GGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEE----CCGG
T ss_pred EEEEEECCCCCCCCCCCCC--hHHhcCcccccccccccccccc----ccccccccccccchhhhcccccccc----cccc
Confidence 4777777777765333445 5677777777777775 56665 3566677777777777777777652 3344
Q ss_pred hhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcc
Q psy3611 118 MKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSH 197 (472)
Q Consensus 118 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (472)
+.....|+.+++++|.+....+.
T Consensus 121 ~~~~~~L~~l~l~~N~~~~~~p~--------------------------------------------------------- 143 (313)
T d1ogqa_ 121 LSQIKTLVTLDFSYNALSGTLPP--------------------------------------------------------- 143 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCG---------------------------------------------------------
T ss_pred ccchhhhcccccccccccccCch---------------------------------------------------------
Confidence 56677777777777755432111
Q ss_pred cccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHHHhccCCCc-ceEEEeeCCCCChhHHHHHH
Q psy3611 198 NASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADLLRSSCCFA-LEELKLNNNGLGITGCKLLS 276 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~-L~~L~l~~~~i~~~~~~~l~ 276 (472)
.+..++.++.+++++|.+.......+.. +.. ++.+++++|+++......+
T Consensus 144 ----------------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~------l~~l~~~l~~~~n~l~~~~~~~~- 194 (313)
T d1ogqa_ 144 ----------------------SISSLPNLVGITFDGNRISGAIPDSYGS------FSKLFTSMTISRNRLTGKIPPTF- 194 (313)
T ss_dssp ----------------------GGGGCTTCCEEECCSSCCEEECCGGGGC------CCTTCCEEECCSSEEEEECCGGG-
T ss_pred ----------------------hhccCcccceeecccccccccccccccc------ccccccccccccccccccccccc-
Confidence 1223466777777777664332222221 123 4667777776543221111
Q ss_pred HHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEc
Q psy3611 277 KALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNL 356 (472)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 356 (472)
+. .....++++.+..... ++..+...++++.++++++.+... ...+..+++|+.|++
T Consensus 195 -------------~~-l~~~~l~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~l~~~-----~~~~~~~~~L~~L~L 251 (313)
T d1ogqa_ 195 -------------AN-LNLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFD-----LGKVGLSKNLNGLDL 251 (313)
T ss_dssp -------------GG-CCCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCB-----GGGCCCCTTCCEEEC
T ss_pred -------------cc-cccccccccccccccc----cccccccccccccccccccccccc-----ccccccccccccccC
Confidence 11 2345677777665543 444555677888888888877622 234556788888888
Q ss_pred cCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCC
Q psy3611 357 NDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEI 417 (472)
Q Consensus 357 ~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 417 (472)
++|+++ |. +++.+..+++|++|++++|.+++. +| .+..+++|+.+++++|+.
T Consensus 252 s~N~l~--g~--iP~~l~~L~~L~~L~Ls~N~l~g~----iP-~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 252 RNNRIY--GT--LPQGLTQLKFLHSLNVSFNNLCGE----IP-QGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CSSCCE--EC--CCGGGGGCTTCCEEECCSSEEEEE----CC-CSTTGGGSCGGGTCSSSE
T ss_pred ccCeec--cc--CChHHhCCCCCCEEECcCCccccc----CC-CcccCCCCCHHHhCCCcc
Confidence 888887 32 456778888889999988888743 44 235567888888888863
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.64 E-value=7.9e-20 Score=171.68 Aligned_cols=251 Identities=20% Similarity=0.222 Sum_probs=180.1
Q ss_pred CCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcC-CccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHH
Q psy3611 66 PSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC-NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEK 144 (472)
Q Consensus 66 ~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 144 (472)
.+++.|+|+++.+.+.. .++..++++++|++|+|++ |.+++ .+|..+..+++|++|++++|.+....+.
T Consensus 50 ~~v~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l~~~~~~---- 119 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPD---- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCG----
T ss_pred EEEEEEECCCCCCCCCC--CCChHHhcCcccccccccccccccc----ccccccccccccchhhhccccccccccc----
Confidence 36889999999887532 3677888999999999986 67775 3788889999999999999877542111
Q ss_pred HHHhchhhHHhhhccCCCCCCccccchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcC
Q psy3611 145 LMKSFGMAAALVLEDDEGECSDEEQDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTG 224 (472)
Q Consensus 145 ~l~~~~~l~~L~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (472)
.+...
T Consensus 120 ---------------------------------------------------------------------------~~~~~ 124 (313)
T d1ogqa_ 120 ---------------------------------------------------------------------------FLSQI 124 (313)
T ss_dssp ---------------------------------------------------------------------------GGGGC
T ss_pred ---------------------------------------------------------------------------cccch
Confidence 12234
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcc-eeEEEcCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLA-LKVFIAGRN 303 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~-L~~L~l~~~ 303 (472)
..|+.+++++|.+.......+ ..++.++.+++++|.++.. ++..++.+.. ++.++++.|
T Consensus 125 ~~L~~l~l~~N~~~~~~p~~l------~~l~~L~~l~l~~n~l~~~--------------ip~~~~~l~~l~~~l~~~~n 184 (313)
T d1ogqa_ 125 KTLVTLDFSYNALSGTLPPSI------SSLPNLVGITFDGNRISGA--------------IPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGG------GGCTTCCEEECCSSCCEEE--------------CCGGGGCCCTTCCEEECCSS
T ss_pred hhhcccccccccccccCchhh------ccCcccceeeccccccccc--------------cccccccccccccccccccc
Confidence 789999999887743333333 2357899999999987532 1112222334 488999999
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
++.+. .+..+... ....+++..+.... .++..+...++++.+++++|.+.. . + ..+..+++|+.|+
T Consensus 185 ~l~~~----~~~~~~~l-~~~~l~l~~~~~~~----~~~~~~~~~~~l~~l~~~~~~l~~--~--~-~~~~~~~~L~~L~ 250 (313)
T d1ogqa_ 185 RLTGK----IPPTFANL-NLAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAF--D--L-GKVGLSKNLNGLD 250 (313)
T ss_dssp EEEEE----CCGGGGGC-CCSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECC--B--G-GGCCCCTTCCEEE
T ss_pred ccccc----cccccccc-cccccccccccccc----cccccccccccccccccccccccc--c--c-ccccccccccccc
Confidence 88753 33334444 44578888876542 234556677899999999998763 2 1 3566788999999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCC
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQ 444 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 444 (472)
+++|.+++. +|..+..+++|+.|+|++|+++.. +|. +.++++|+.+++.+|+
T Consensus 251 Ls~N~l~g~----iP~~l~~L~~L~~L~Ls~N~l~g~----iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 251 LRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGE----IPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEE----CCC-STTGGGSCGGGTCSSS
T ss_pred CccCeeccc----CChHHhCCCCCCEEECcCCccccc----CCC-cccCCCCCHHHhCCCc
Confidence 999999854 788888999999999999988753 453 4567788888999887
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.62 E-value=2.9e-16 Score=146.39 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=43.2
Q ss_pred CCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHH
Q psy3611 38 KKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKA 117 (472)
Q Consensus 38 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 117 (472)
+++++|++++|.++.. .+ ..|..+++|++|++++|.+... .+..+..++.|++|++++|.+.. ++..
T Consensus 31 ~~l~~L~Ls~N~i~~l--~~--~~f~~l~~L~~L~l~~n~~~~i----~~~~f~~l~~L~~L~l~~n~l~~-----l~~~ 97 (305)
T d1xkua_ 31 PDTALLDLQNNKITEI--KD--GDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLERLYLSKNQLKE-----LPEK 97 (305)
T ss_dssp TTCCEEECCSSCCCCB--CT--TTTTTCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSSCCSB-----CCSS
T ss_pred CCCCEEECcCCcCCCc--Ch--hHhhcccccccccccccccccc----chhhhhCCCccCEecccCCccCc-----Cccc
Confidence 4566666666665321 11 2455566666666666665542 12334455666666666666553 2211
Q ss_pred hhhCCCccEEEecCCcCC
Q psy3611 118 MKNKTKLKQINVSENQFG 135 (472)
Q Consensus 118 l~~~~~L~~L~l~~~~i~ 135 (472)
....++.|.+.++.+.
T Consensus 98 --~~~~l~~L~~~~n~l~ 113 (305)
T d1xkua_ 98 --MPKTLQELRVHENEIT 113 (305)
T ss_dssp --CCTTCCEEECCSSCCC
T ss_pred --hhhhhhhhhccccchh
Confidence 2345555555555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.62 E-value=4.5e-15 Score=124.87 Aligned_cols=149 Identities=14% Similarity=0.189 Sum_probs=125.9
Q ss_pred HHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCCh
Q psy3611 313 LAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 391 (472)
+.......++|++|+++++ .+++.++..+..++..+++|++|++++|.++++++..+++++...+.|++|++++|.+++
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~ 86 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 86 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence 3334445689999999974 699999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCEEECcCCC---CCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCce
Q psy3611 392 AGASSIAKYLTDNTTLEDVNLTCNE---ISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMA 463 (472)
Q Consensus 392 ~~~~~l~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L 463 (472)
.|+..+..++..+++|++|++++|. ++++++..++.++..+++|++|+++.+..+ +...+.+++..+.++
T Consensus 87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~--~~~~i~~~l~~N~~~ 159 (167)
T d1pgva_ 87 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME--ARHRVSEALERNYER 159 (167)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch--HHHHHHHHHHHhhHH
Confidence 9999999999999999999998874 667778889999999999999999876542 334566666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.62 E-value=8.2e-16 Score=143.27 Aligned_cols=224 Identities=18% Similarity=0.227 Sum_probs=142.3
Q ss_pred CCccEEeccCCCcchhhHHHHH-HhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALS-DAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
+++++|+|++|.|+. ++ ..|..+++|++|++++|.+. ...+ .+|..+++|++|++++|.++.. +.
T Consensus 31 ~~l~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~l~~n~~~--~i~~--~~f~~l~~L~~L~l~~n~l~~l-----~~ 96 (305)
T d1xkua_ 31 PDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKIS--KISP--GAFAPLVKLERLYLSKNQLKEL-----PE 96 (305)
T ss_dssp TTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCC--CBCT--TTTTTCTTCCEEECCSSCCSBC-----CS
T ss_pred CCCCEEECcCCcCCC-----cChhHhhcccccccccccccccc--ccch--hhhhCCCccCEecccCCccCcC-----cc
Confidence 679999999999885 44 35888999999999999985 3334 5688999999999999998853 32
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhHHHHHHHHHhchhhHHhhhccCCCCCCccc
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLEDDEGECSDEE 168 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~l~~L~~~~~~~~~~~~i 168 (472)
. ....++.|++..|.+.... ...+.....+..++...+......
T Consensus 97 ~--~~~~l~~L~~~~n~l~~l~----~~~~~~~~~~~~l~~~~n~~~~~~------------------------------ 140 (305)
T d1xkua_ 97 K--MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSG------------------------------ 140 (305)
T ss_dssp S--CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGG------------------------------
T ss_pred c--hhhhhhhhhccccchhhhh----hhhhhccccccccccccccccccC------------------------------
Confidence 2 2467899999999887632 233455667777777666443210
Q ss_pred cchhhhcccCCccccCCCccCCCCCCCcccccccccCCCCcccccchhhhhhhhcCCcccEEeCCCCCCChhhHHHHHHH
Q psy3611 169 QDEESEEENDSDAEGDNSNLSHNDSNHSHNASNQSHNNSNQSHNTSNQSHMSLKTGARLVELDLSDNAFGPIGVEGLADL 248 (472)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 248 (472)
.....+..++.|+.+++++|.+.....
T Consensus 141 -----------------------------------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~------ 167 (305)
T d1xkua_ 141 -----------------------------------------------IENGAFQGMKKLSYIRIADTNITTIPQ------ 167 (305)
T ss_dssp -----------------------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCS------
T ss_pred -----------------------------------------------CCccccccccccCccccccCCccccCc------
Confidence 000112335788888888887743221
Q ss_pred HhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeC
Q psy3611 249 LRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEM 328 (472)
Q Consensus 249 l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l 328 (472)
..++++++|++++|.++.... ..+..++.++.|++++|.+... .+.++..+++|++|++
T Consensus 168 ---~~~~~L~~L~l~~n~~~~~~~--------------~~~~~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L 226 (305)
T d1xkua_ 168 ---GLPPSLTELHLDGNKITKVDA--------------ASLKGLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHL 226 (305)
T ss_dssp ---SCCTTCSEEECTTSCCCEECT--------------GGGTTCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEEC
T ss_pred ---ccCCccCEEECCCCcCCCCCh--------------hHhhcccccccccccccccccc----ccccccccccceeeec
Confidence 123567777777776653221 1123345566666666666542 2234445566666666
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q psy3611 329 PQNGIYHVGITALSDAFEENKNLRHLNLNDNTIT 362 (472)
Q Consensus 329 ~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 362 (472)
++|+|+ .++..+..+++|++|++++|+++
T Consensus 227 ~~N~L~-----~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 227 NNNKLV-----KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp CSSCCS-----SCCTTTTTCSSCCEEECCSSCCC
T ss_pred cccccc-----ccccccccccCCCEEECCCCccC
Confidence 666654 23344555666666666666555
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.60 E-value=3.9e-15 Score=125.21 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=94.1
Q ss_pred CcceeEEEcCCC-CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHH
Q psy3611 292 PLALKVFIAGRN-RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLG 370 (472)
Q Consensus 292 ~~~L~~L~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 370 (472)
.++|++|+++++ .++++++..+..++..+++|++|++++|.+++.++..+++.+..+++|++|++++|.++++|+..++
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 367788888763 5777777777777777777888888888777777777777777777788888888877777777777
Q ss_pred HHhcCCCCCcEEEcCCCC---CChHHHHHHHHHhhcCCCCCEEECcCCCC
Q psy3611 371 QALSKLPSLAILNLGDCL---LKSAGASSIAKYLTDNTTLEDVNLTCNEI 417 (472)
Q Consensus 371 ~~l~~~~~L~~L~l~~~~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 417 (472)
+++..+++|++|++++|. +++.++..++.++..+++|+.|+++.+..
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 777777778888877653 55566677777777777787777766543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.58 E-value=1.2e-14 Score=122.38 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=125.2
Q ss_pred HHHHHhcCCCccEEeCCC-CCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCCh
Q psy3611 313 LAAVFKKLKTLERVEMPQ-NGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKS 391 (472)
Q Consensus 313 l~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 391 (472)
+.......++|++|++++ +.+++.++..+..++..+++|++|++++|.++++++..+++.+...+.++.+++++|.+++
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~ 88 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 88 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence 333445678999999997 5799999999999999999999999999999998998999999989999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCEEEC--cCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCcee
Q psy3611 392 AGASSIAKYLTDNTTLEDVNL--TCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAA 464 (472)
Q Consensus 392 ~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~ 464 (472)
+|+..+..++..+++|+.++| ++|.++++|+..++.+++.+++|++|++..+..... ..+..++..+..++
T Consensus 89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~~--~~i~~aL~~N~~l~ 161 (166)
T d1io0a_ 89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR--LRASNAMMNNNDLV 161 (166)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH--HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcHH--HHHHHHHHHHHHHH
Confidence 999999999999999998666 467899999999999999999999999988764322 34666666655543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.2e-15 Score=137.32 Aligned_cols=194 Identities=19% Similarity=0.177 Sum_probs=151.1
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
+.+++|++++|.++......+. .+++|++|+|++|.++... .++.+++|+.|++++|+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~------~l~~L~~L~L~~N~l~~l~----------------~~~~l~~L~~L~Ls~N~ 88 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKLQ----------------VDGTLPVLGTLDLSHNQ 88 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEEE----------------CCSCCTTCCEEECCSSC
T ss_pred cCCCEEECcCCcCCCcCHHHhh------ccccccccccccccccccc----------------ccccccccccccccccc
Confidence 6899999999999766544443 4578999999999987321 22446899999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.. .+..+..+++|+.|+++++.+.... ...+..++++++|++++|.+..... ..+...+.++.+++
T Consensus 89 l~~-----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~l~~L~l~~n~l~~l~~----~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 89 LQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSL 155 (266)
T ss_dssp CSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred ccc-----cccccccccccccccccccccceee----ccccccccccccccccccccceecc----ccccccccchhccc
Confidence 975 4446678899999999999876432 3445678899999999998874221 45567889999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh-HHHHHHHHHHhCCc
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEEMEKLMKSFGM 462 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~~l~~~~~ 462 (472)
++|.++.. .+..+..+++|+.|+|++|.|+. ++..+..+++|+.|++++|++... .+..+.++++++..
T Consensus 156 ~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~~ 225 (266)
T d1p9ag_ 156 ANNNLTEL----PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225 (266)
T ss_dssp TTSCCSCC----CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred cccccccc----CccccccccccceeecccCCCcc-----cChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhccc
Confidence 99999863 33556788999999999999986 777788889999999999998653 23457777775544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=1.3e-13 Score=115.82 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=120.0
Q ss_pred HHHHHhcCCCccEEEccC-CCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCc
Q psy3611 341 LSDAFEENKNLRHLNLND-NTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 419 (472)
Q Consensus 341 l~~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 419 (472)
+.....+.|.|++|++++ +.+++.++..++.++..++.|++|++++|.+++.++..++..+..++.++.+++++|.+++
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~ 88 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 88 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence 344445779999999998 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcccEEEc--cCCCCChhHHHHHHHHHHhCCceeEEecCCC
Q psy3611 420 QGGLDLVKAMKNKTKLKQINV--SENQFGEEGVEEMEKLMKSFGMAAALVLEDD 471 (472)
Q Consensus 420 ~~~~~l~~~l~~~~~L~~L~l--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 471 (472)
+|+..+..++..+++|+.++| .+|++++.+...++++++.+++|++|++++.
T Consensus 89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 999999999999999998766 4678999999999999999999999999765
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.3e-14 Score=131.77 Aligned_cols=135 Identities=24% Similarity=0.178 Sum_probs=67.6
Q ss_pred CCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCC
Q psy3611 254 CFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGI 333 (472)
Q Consensus 254 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 333 (472)
+++|++|++++|.+..... ..++.+.+|+.+++++|.+... .+.++...++|++|++++|.+
T Consensus 104 l~~L~~L~l~~n~~~~~~~--------------~~~~~~~~L~~l~l~~N~l~~i----~~~~f~~~~~L~~L~l~~N~l 165 (284)
T d1ozna_ 104 LGRLHTLHLDRCGLQELGP--------------GLFRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRI 165 (284)
T ss_dssp CTTCCEEECTTSCCCCCCT--------------TTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCC
T ss_pred cccCCEEecCCcccccccc--------------cccchhcccchhhhcccccccc----ChhHhccccchhhcccccCcc
Confidence 4567777777766542211 1122244566666666666531 122344455566666666655
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECc
Q psy3611 334 YHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLT 413 (472)
Q Consensus 334 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~ 413 (472)
.... +.++.++++|+++++++|.++... +..+..+++|+.|++++|.+.+. .+.++..++.|+.++++
T Consensus 166 ~~l~----~~~f~~l~~L~~l~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~i~~~----~~~~~~~~~~L~~L~l~ 233 (284)
T d1ozna_ 166 SSVP----ERAFRGLHSLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLN 233 (284)
T ss_dssp CEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECC
T ss_pred cccc----hhhhccccccchhhhhhccccccC----hhHhhhhhhcccccccccccccc----cccccccccccCEEEec
Confidence 4221 234445555666666655555211 13445555555555555555542 23344455555555555
Q ss_pred CCCCC
Q psy3611 414 CNEIS 418 (472)
Q Consensus 414 ~n~i~ 418 (472)
+|.+.
T Consensus 234 ~N~l~ 238 (284)
T d1ozna_ 234 DNPWV 238 (284)
T ss_dssp SSCEE
T ss_pred CCCCC
Confidence 55433
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=8.7e-15 Score=133.30 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=72.0
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
...+.+++.+++.++. +|..+. +++++|+|++|.++. ..+ .+|..+++|++|++++|.++.. +
T Consensus 9 ~~~~~~v~C~~~~L~~-----iP~~lp--~~l~~L~Ls~N~i~~--l~~--~~f~~l~~L~~L~L~~N~l~~l-----~- 71 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTA-----LPPDLP--KDTTILHLSENLLYT--FSL--ATLMPYTRLTQLNLDRAELTKL-----Q- 71 (266)
T ss_dssp STTCCEEECTTSCCSS-----CCSCCC--TTCCEEECTTSCCSE--EEG--GGGTTCTTCCEEECTTSCCCEE-----E-
T ss_pred cCCCeEEEccCCCCCe-----eCcCcC--cCCCEEECcCCcCCC--cCH--HHhhcccccccccccccccccc-----c-
Confidence 3455667777777763 444332 578888888888752 222 4577888888888888888753 1
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
..+.+++|++|++++|.+.. .+..+..+++|+.|+++++.+.
T Consensus 72 ~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~l~~~~~~ 113 (266)
T d1p9ag_ 72 VDGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLT 113 (266)
T ss_dssp CCSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCC
T ss_pred cccccccccccccccccccc-----cccccccccccccccccccccc
Confidence 23457888888888888774 3445566778888888877654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.4e-14 Score=129.93 Aligned_cols=210 Identities=20% Similarity=0.207 Sum_probs=135.8
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHH--HH--------hhccc-CcCCCCCc
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKA--LH--------DCYES-SKKEGSPL 293 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~--l~--------~~~~~-~~~~~~~~ 293 (472)
+.+++|++++|.++......+. .+++|+.|+++++.+.......+... +. ..... +..+..++
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~------~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~ 105 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFR------ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTT------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCCEEECcCCcCCCCCHHHhh------ccccccccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence 5677888888887655433332 34678888888877653322221110 00 00000 23456677
Q ss_pred ceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHh
Q psy3611 294 ALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQAL 373 (472)
Q Consensus 294 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l 373 (472)
+|+.|++++|.+... ....+....+|+.+++++|.++... ...+..++.|+.|++++|.+.... ..++
T Consensus 106 ~L~~L~l~~n~~~~~----~~~~~~~~~~L~~l~l~~N~l~~i~----~~~f~~~~~L~~L~l~~N~l~~l~----~~~f 173 (284)
T d1ozna_ 106 RLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSVP----ERAF 173 (284)
T ss_dssp TCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEEC----TTTT
T ss_pred cCCEEecCCcccccc----cccccchhcccchhhhccccccccC----hhHhccccchhhcccccCcccccc----hhhh
Confidence 888888888877542 2234456778888888888876432 345667778888888888876321 1456
Q ss_pred cCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChh-HHHH
Q psy3611 374 SKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEE-GVEE 452 (472)
Q Consensus 374 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~-~~~~ 452 (472)
..+++|+.+++++|.+++. .+..+..+++|+.|++++|.+... .+..+..+++|++|++++|++... ....
T Consensus 174 ~~l~~L~~l~l~~N~l~~i----~~~~f~~l~~L~~L~l~~N~i~~~----~~~~~~~~~~L~~L~l~~N~l~C~C~~~~ 245 (284)
T d1ozna_ 174 RGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPWVCDCRARP 245 (284)
T ss_dssp TTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred ccccccchhhhhhcccccc----ChhHhhhhhhcccccccccccccc----cccccccccccCEEEecCCCCCCCccchH
Confidence 6788888888888888764 356677778888888888888764 356677888888888888886532 3344
Q ss_pred HHHHHHhC
Q psy3611 453 MEKLMKSF 460 (472)
Q Consensus 453 l~~~l~~~ 460 (472)
+..+++..
T Consensus 246 l~~~l~~~ 253 (284)
T d1ozna_ 246 LWAWLQKF 253 (284)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 55555543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=1.8e-13 Score=121.31 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=40.9
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
++|+.|++++|.+.+. . .+.++++|+.|++++|++++. ..+.++++|++|++++|++++. ..
T Consensus 151 ~~L~~L~l~~n~~~~~-----~-~l~~l~~L~~L~Ls~n~l~~l------~~l~~l~~L~~L~Ls~N~lt~i------~~ 212 (227)
T d1h6ua2 151 TNLQYLSIGNAQVSDL-----T-PLANLSKLTTLKADDNKISDI------SPLASLPNLIEVHLKNNQISDV------SP 212 (227)
T ss_dssp TTCCEEECCSSCCCCC-----G-GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECTTSCCCBC------GG
T ss_pred cccccccccccccccc-----h-hhcccccceecccCCCccCCC------hhhcCCCCCCEEECcCCcCCCC------cc
Confidence 4455555555554431 0 134556666666666666532 1245566666666666666631 23
Q ss_pred hcCCCCCcEEEcC
Q psy3611 373 LSKLPSLAILNLG 385 (472)
Q Consensus 373 l~~~~~L~~L~l~ 385 (472)
++.+++|+.|+++
T Consensus 213 l~~l~~L~~L~ls 225 (227)
T d1h6ua2 213 LANTSNLFIVTLT 225 (227)
T ss_dssp GTTCTTCCEEEEE
T ss_pred cccCCCCCEEEee
Confidence 5566666666664
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=4.4e-13 Score=116.13 Aligned_cols=160 Identities=23% Similarity=0.311 Sum_probs=126.2
Q ss_pred CcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCC
Q psy3611 255 FALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIY 334 (472)
Q Consensus 255 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 334 (472)
+++++|+++++.+++.. .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.
T Consensus 40 ~~l~~L~l~~~~i~~l~----------------~l~~l~nL~~L~Ls~N~l~~-----~~-~l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 40 DQVTTLQADRLGIKSID----------------GVEYLNNLTQINFSNNQLTD-----IT-PLKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp TTCCEEECTTSCCCCCT----------------TGGGCTTCCEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCC
T ss_pred cCCCEEECCCCCCCCcc----------------ccccCCCcCcCccccccccC-----cc-cccCCcccccccccccccc
Confidence 47899999999886421 12236789999999999986 22 2678999999999999887
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcC
Q psy3611 335 HVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTC 414 (472)
Q Consensus 335 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~ 414 (472)
... .+.+++.|+.|+++++.+... +.+..+++|+.|++++|.+.. + ..+..+++|+.|++.+
T Consensus 98 ~~~------~l~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~n~l~~-----~-~~l~~~~~L~~L~l~~ 159 (199)
T d2omxa2 98 DIT------PLANLTNLTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD-----I-SALSGLTSLQQLNFSS 159 (199)
T ss_dssp CCG------GGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCC-----C-GGGTTCTTCSEEECCS
T ss_pred ccc------ccccccccccccccccccccc------cccchhhhhHHhhhhhhhhcc-----c-cccccccccccccccc
Confidence 432 477899999999999987742 346678999999999999875 3 3567889999999999
Q ss_pred CCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEE
Q psy3611 415 NEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAAL 466 (472)
Q Consensus 415 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L 466 (472)
|.+++ + ..+.++++|++|++++|++++- ..+..+++|+.|
T Consensus 160 n~l~~-----l-~~l~~l~~L~~L~ls~N~i~~i------~~l~~L~~L~~L 199 (199)
T d2omxa2 160 NQVTD-----L-KPLANLTTLERLDISSNKVSDI------SVLAKLTNLESL 199 (199)
T ss_dssp SCCCC-----C-GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred ccccC-----C-ccccCCCCCCEEECCCCCCCCC------ccccCCCCCCcC
Confidence 99987 2 3578899999999999999752 135568888775
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.37 E-value=8.7e-13 Score=115.22 Aligned_cols=104 Identities=30% Similarity=0.436 Sum_probs=45.5
Q ss_pred cCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHH
Q psy3611 319 KLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIA 398 (472)
Q Consensus 319 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 398 (472)
.+++|+.|++++|++++. + .+..+++|+.|++++|.+... ..+..++.++.+++++|.+++.
T Consensus 88 ~l~~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~l~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~~------ 149 (210)
T d1h6ta2 88 NLKNLGWLFLDENKVKDL-----S-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------ 149 (210)
T ss_dssp TCTTCCEEECCSSCCCCG-----G-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------
T ss_pred cCcccccccccccccccc-----c-ccccccccccccccccccccc------cccccccccccccccccccccc------
Confidence 344455555544444421 1 233444455555555444321 2233444455555555544431
Q ss_pred HHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 399 KYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 399 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
.....+++|+.+++++|.+.+ +. .+.++++|++|++++|+++
T Consensus 150 ~~~~~l~~L~~l~l~~n~l~~-----i~-~l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 150 TVLSRLTKLDTLSLEDNQISD-----IV-PLAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp GGGGGCTTCSEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCC
T ss_pred ccccccccccccccccccccc-----cc-cccCCCCCCEEECCCCCCC
Confidence 122334455555555554443 11 2444455555555555544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.37 E-value=6.3e-13 Score=117.72 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=146.4
Q ss_pred cCCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC
Q psy3611 223 TGARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR 302 (472)
Q Consensus 223 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~ 302 (472)
.+.+|++|++.+|.+... +.+ ..+++|++|++++|.+++.. .+..+++++.+++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~l------~~l~~L~~L~ls~n~i~~~~----------------~l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVTTI--EGV------QYLNNLIGLELKDNQITDLA----------------PLKNLTKITELELSG 94 (227)
T ss_dssp HHHTCCEEECTTSCCCCC--TTG------GGCTTCCEEECCSSCCCCCG----------------GGTTCCSCCEEECCS
T ss_pred HcCCcCEEECCCCCCCcc--hhH------hcCCCCcEeecCCceeeccc----------------ccccccccccccccc
Confidence 347899999999998543 122 24689999999999987431 134468999999999
Q ss_pred CCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEE
Q psy3611 303 NRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAIL 382 (472)
Q Consensus 303 ~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L 382 (472)
|.+..- + .+..+++|+.++++++..... ..+...+.++.+.++.+.+... ..+..+++|+.|
T Consensus 95 n~~~~i-----~-~l~~l~~L~~l~l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L 156 (227)
T d1h6ua2 95 NPLKNV-----S-AIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYL 156 (227)
T ss_dssp CCCSCC-----G-GGTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEE
T ss_pred cccccc-----c-ccccccccccccccccccccc------chhccccchhhhhchhhhhchh------hhhccccccccc
Confidence 988752 2 466889999999999987632 2355678999999999888632 235678899999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCc
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGM 462 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~ 462 (472)
++++|.+.+. ..+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++++.. .++.+++
T Consensus 157 ~l~~n~~~~~------~~l~~l~~L~~L~Ls~n~l~~-----l~-~l~~l~~L~~L~Ls~N~lt~i~------~l~~l~~ 218 (227)
T d1h6ua2 157 SIGNAQVSDL------TPLANLSKLTTLKADDNKISD-----IS-PLASLPNLIEVHLKNNQISDVS------PLANTSN 218 (227)
T ss_dssp ECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC-----CG-GGGGCTTCCEEECTTSCCCBCG------GGTTCTT
T ss_pred cccccccccc------hhhcccccceecccCCCccCC-----Ch-hhcCCCCCCEEECcCCcCCCCc------ccccCCC
Confidence 9999998763 236778999999999999987 33 4788999999999999987532 2677999
Q ss_pred eeEEecCC
Q psy3611 463 AAALVLED 470 (472)
Q Consensus 463 L~~L~l~~ 470 (472)
|+.|++++
T Consensus 219 L~~L~lsn 226 (227)
T d1h6ua2 219 LFIVTLTN 226 (227)
T ss_dssp CCEEEEEE
T ss_pred CCEEEeeC
Confidence 99999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.37 E-value=7.3e-13 Score=115.73 Aligned_cols=164 Identities=24% Similarity=0.279 Sum_probs=131.0
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCCC
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRNR 304 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 304 (472)
..|++|+++++.+ .-... ...+++|++|++++|++++.. .++.+++|+.|++++|+
T Consensus 46 ~~L~~L~l~~~~i------~~l~~--l~~l~~L~~L~L~~n~i~~l~----------------~~~~l~~L~~L~l~~n~ 101 (210)
T d1h6ta2 46 NSIDQIIANNSDI------KSVQG--IQYLPNVTKLFLNGNKLTDIK----------------PLANLKNLGWLFLDENK 101 (210)
T ss_dssp HTCCEEECTTSCC------CCCTT--GGGCTTCCEEECCSSCCCCCG----------------GGTTCTTCCEEECCSSC
T ss_pred cCccEEECcCCCC------CCchh--HhhCCCCCEEeCCCccccCcc----------------ccccCcccccccccccc
Confidence 5899999999876 12222 245789999999999987432 12446899999999999
Q ss_pred CChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEc
Q psy3611 305 LENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNL 384 (472)
Q Consensus 305 l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l 384 (472)
+.+ ++ .+..+++|+.|++++|.+... ..+..++.++.+++++|.+++. .....+++|+.+++
T Consensus 102 i~~-----l~-~l~~l~~L~~L~l~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~~------~~~~~l~~L~~l~l 163 (210)
T d1h6ta2 102 VKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSL 163 (210)
T ss_dssp CCC-----GG-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEEC
T ss_pred ccc-----cc-ccccccccccccccccccccc------cccccccccccccccccccccc------cccccccccccccc
Confidence 985 43 467789999999999988642 3577899999999999998853 34567899999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccC
Q psy3611 385 GDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSE 442 (472)
Q Consensus 385 ~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 442 (472)
++|.+.+ +. .+..+++|+.|++++|.|++ ++ .+..+++|++|++++
T Consensus 164 ~~n~l~~-----i~-~l~~l~~L~~L~Ls~N~i~~-----l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 164 EDNQISD-----IV-PLAGLTKLQNLYLSKNHISD-----LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSSCCCC-----CG-GGTTCTTCCEEECCSSCCCB-----CG-GGTTCTTCSEEEEEE
T ss_pred ccccccc-----cc-cccCCCCCCEEECCCCCCCC-----Ch-hhcCCCCCCEEEccC
Confidence 9999986 32 36788999999999999987 44 588999999999874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.34 E-value=1.1e-12 Score=123.83 Aligned_cols=96 Identities=24% Similarity=0.330 Sum_probs=69.1
Q ss_pred CCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHH
Q psy3611 10 KTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 89 (472)
Q Consensus 10 ~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~ 89 (472)
.++++|+|+++.++. +|+. .++|++|++++|.++ .+| ....+|+.|++++|.++.. ...
T Consensus 38 ~~l~~LdLs~~~L~~-----lp~~---~~~L~~L~Ls~N~l~---~lp-----~~~~~L~~L~l~~n~l~~l-----~~l 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-----LPEL---PPHLESLVASCNSLT---ELP-----ELPQSLKSLLVDNNNLKAL-----SDL 96 (353)
T ss_dssp HTCSEEECTTSCCSC-----CCSC---CTTCSEEECCSSCCS---SCC-----CCCTTCCEEECCSSCCSCC-----CSC
T ss_pred cCCCEEEeCCCCCCC-----CCCC---CCCCCEEECCCCCCc---ccc-----cchhhhhhhhhhhcccchh-----hhh
Confidence 468899999988874 4542 478999999998874 333 2246889999999887753 221
Q ss_pred hhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 90 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 90 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
.+.|++|++++|.+.. ++ ....+++|+.|+++++.+.
T Consensus 97 ---p~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 97 ---PPLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp ---CTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCS
T ss_pred ---cccccccccccccccc-----cc-chhhhccceeecccccccc
Confidence 2468999999998875 33 2466788999999888665
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.31 E-value=2.9e-12 Score=110.86 Aligned_cols=161 Identities=24% Similarity=0.322 Sum_probs=127.9
Q ss_pred CCcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCCC
Q psy3611 224 GARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGRN 303 (472)
Q Consensus 224 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 303 (472)
..++++|+++++.+.+.. .+ ..+++|++|++++|++++.. .++.+++|+.|++++|
T Consensus 39 l~~l~~L~l~~~~i~~l~--~l------~~l~nL~~L~Ls~N~l~~~~----------------~l~~l~~L~~L~l~~n 94 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID--GV------EYLNNLTQINFSNNQLTDIT----------------PLKNLTKLVDILMNNN 94 (199)
T ss_dssp HTTCCEEECTTSCCCCCT--TG------GGCTTCCEEECCSSCCCCCG----------------GGTTCTTCCEEECCSS
T ss_pred hcCCCEEECCCCCCCCcc--cc------ccCCCcCcCccccccccCcc----------------cccCCccccccccccc
Confidence 479999999999985431 12 23579999999999987432 1345789999999999
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILN 383 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 383 (472)
.+... + .+..+++|+.|+++++.+... ..+..+++|+.|++++|.+.. . ..+..+++++.|+
T Consensus 95 ~~~~~-----~-~l~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~n~l~~--~----~~l~~~~~L~~L~ 156 (199)
T d2omxa2 95 QIADI-----T-PLANLTNLTGLTLFNNQITDI------DPLKNLTNLNRLELSSNTISD--I----SALSGLTSLQQLN 156 (199)
T ss_dssp CCCCC-----G-GGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCC--C----GGGTTCTTCSEEE
T ss_pred ccccc-----c-ccccccccccccccccccccc------cccchhhhhHHhhhhhhhhcc--c----ccccccccccccc
Confidence 88752 2 367899999999999987643 246678999999999999873 2 4577899999999
Q ss_pred cCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEE
Q psy3611 384 LGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQI 438 (472)
Q Consensus 384 l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 438 (472)
+.+|.+++ + ..+..+++|+.|++++|++++ + ..+..+++|++|
T Consensus 157 l~~n~l~~-----l-~~l~~l~~L~~L~ls~N~i~~-----i-~~l~~L~~L~~L 199 (199)
T d2omxa2 157 FSSNQVTD-----L-KPLANLTTLERLDISSNKVSD-----I-SVLAKLTNLESL 199 (199)
T ss_dssp CCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEE
T ss_pred cccccccC-----C-ccccCCCCCCEEECCCCCCCC-----C-ccccCCCCCCcC
Confidence 99999986 3 246888999999999999987 3 357788888876
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.2e-13 Score=110.37 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=96.1
Q ss_pred CCCcceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHH
Q psy3611 290 GSPLALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPL 369 (472)
Q Consensus 290 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l 369 (472)
.++..+++|++++|.+.. ++..+..+++|+.|++++|+|... +.+..+++|++|++++|.+.....
T Consensus 15 ~n~~~lr~L~L~~n~I~~-----i~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~~--- 80 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGE--- 80 (162)
T ss_dssp ECTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECS---
T ss_pred cCcCcCcEEECCCCCCCc-----cCccccccccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccCCCc---
Confidence 345678888888888875 333445678899999999988742 246678889999999998874321
Q ss_pred HHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhH
Q psy3611 370 GQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEG 449 (472)
Q Consensus 370 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 449 (472)
..+..+++|++|++++|.+.+... + ..+..+++|+.+++++|.+...... -...+..+++|++|| +.+++...
T Consensus 81 -~~~~~l~~L~~L~L~~N~i~~~~~--l-~~l~~l~~L~~L~l~~N~i~~~~~~-r~~~i~~lp~L~~LD--~~~i~~~e 153 (162)
T d1a9na_ 81 -GLDQALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLD--FQKVKLKE 153 (162)
T ss_dssp -CHHHHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEET--TEECCHHH
T ss_pred -cccccccccccceecccccccccc--c-cccccccccchhhcCCCccccccch-HHHHHHHCCCcCeeC--CCCCCHHH
Confidence 223457888999999888876211 1 3567788899999988877653210 123466788888875 55666544
Q ss_pred HH
Q psy3611 450 VE 451 (472)
Q Consensus 450 ~~ 451 (472)
.+
T Consensus 154 r~ 155 (162)
T d1a9na_ 154 RQ 155 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=5e-12 Score=105.14 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=100.6
Q ss_pred hcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHH
Q psy3611 318 KKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI 397 (472)
Q Consensus 318 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l 397 (472)
..+.++++|++++|+|+.. +..+..+++|+.|++++|.+..- +.+..+++|++|++++|.+....
T Consensus 15 ~n~~~lr~L~L~~n~I~~i-----~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~---- 79 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIG---- 79 (162)
T ss_dssp ECTTSCEEEECTTSCCCSC-----CCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEEC----
T ss_pred cCcCcCcEEECCCCCCCcc-----CccccccccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccCCC----
Confidence 3456899999999999843 33446789999999999999842 34678999999999999998631
Q ss_pred HHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHHHHHHHHHHhCCceeEEecC
Q psy3611 398 AKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSFGMAAALVLE 469 (472)
Q Consensus 398 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 469 (472)
+..+..+++|+.|++++|.|.+-. -...+..+++|++|++++|+++...- .-...+..+|+|+.||-.
T Consensus 80 ~~~~~~l~~L~~L~L~~N~i~~~~---~l~~l~~l~~L~~L~l~~N~i~~~~~-~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 80 EGLDQALPDLTELILTNNSLVELG---DLDPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGG---GGGGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTE
T ss_pred ccccccccccccceeccccccccc---cccccccccccchhhcCCCccccccc-hHHHHHHHCCCcCeeCCC
Confidence 123356799999999999998721 12457889999999999999864321 112346679999998843
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.12 E-value=5.3e-11 Score=112.00 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=69.2
Q ss_pred cCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHH
Q psy3611 9 LKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAK 88 (472)
Q Consensus 9 ~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~ 88 (472)
.++|++|++++|.|+. +|.. ..+|+.|++.+|.++..... .+.|++|++++|.+.. ++.
T Consensus 57 ~~~L~~L~Ls~N~l~~-----lp~~---~~~L~~L~l~~n~l~~l~~l--------p~~L~~L~L~~n~l~~-----lp~ 115 (353)
T d1jl5a_ 57 PPHLESLVASCNSLTE-----LPEL---PQSLKSLLVDNNNLKALSDL--------PPLLEYLGVSNNQLEK-----LPE 115 (353)
T ss_dssp CTTCSEEECCSSCCSS-----CCCC---CTTCCEEECCSSCCSCCCSC--------CTTCCEEECCSSCCSS-----CCC
T ss_pred CCCCCEEECCCCCCcc-----cccc---hhhhhhhhhhhcccchhhhh--------cccccccccccccccc-----ccc
Confidence 4689999999999885 4433 46899999999987533211 1479999999999875 333
Q ss_pred HhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcC
Q psy3611 89 YLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQF 134 (472)
Q Consensus 89 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i 134 (472)
.+.+++|+.|+++++.+... + .....+..+.+..+..
T Consensus 116 -~~~l~~L~~L~l~~~~~~~~-----~---~~~~~l~~l~~~~~~~ 152 (353)
T d1jl5a_ 116 -LQNSSFLKIIDVDNNSLKKL-----P---DLPPSLEFIAAGNNQL 152 (353)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCC
T ss_pred -hhhhccceeecccccccccc-----c---cccccccchhhccccc
Confidence 46689999999999988742 2 1235666777665543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=1.1e-11 Score=98.02 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=50.9
Q ss_pred EEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcC
Q psy3611 325 RVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDN 404 (472)
Q Consensus 325 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~ 404 (472)
.|++++|+++.. + .+..++.|++|++++|.++. ++..+..+++|+.|++++|.+++ ++ .+..+
T Consensus 2 ~L~Ls~n~l~~l-----~-~l~~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~-----l~-~~~~l 64 (124)
T d1dcea3 2 VLHLAHKDLTVL-----C-HLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GVANL 64 (124)
T ss_dssp EEECTTSCCSSC-----C-CGGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GGTTC
T ss_pred EEEcCCCCCCCC-----c-ccccCCCCCEEECCCCccCc-----chhhhhhhhcccccccccccccc-----cC-ccccc
Confidence 455555555421 1 24445555555555555542 22334455555555555555554 22 24455
Q ss_pred CCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 405 TTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
++|+.+++++|.|.... -...+..+++|++|++++|+++
T Consensus 65 ~~L~~L~l~~N~i~~~~---~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 65 PRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGG
T ss_pred cccCeEECCCCccCCCC---CchhhcCCCCCCEEECCCCcCC
Confidence 56666666666555411 0123455566666666666553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=2e-10 Score=90.50 Aligned_cols=104 Identities=20% Similarity=0.346 Sum_probs=83.9
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhc
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTD 92 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~ 92 (472)
|.|+|++|.++. ++ .+..+++|++|++++|.+. .+| ..+..+++|++|++++|.+++. + .+..
T Consensus 1 R~L~Ls~n~l~~-----l~-~l~~l~~L~~L~ls~N~l~---~lp--~~~~~l~~L~~L~l~~N~i~~l-----~-~~~~ 63 (124)
T d1dcea3 1 RVLHLAHKDLTV-----LC-HLEQLLLVTHLDLSHNRLR---ALP--PALAALRCLEVLQASDNALENV-----D-GVAN 63 (124)
T ss_dssp SEEECTTSCCSS-----CC-CGGGGTTCCEEECCSSCCC---CCC--GGGGGCTTCCEEECCSSCCCCC-----G-GGTT
T ss_pred CEEEcCCCCCCC-----Cc-ccccCCCCCEEECCCCccC---cch--hhhhhhhccccccccccccccc-----C-cccc
Confidence 579999999985 23 4778899999999999984 344 4678899999999999999863 2 4678
Q ss_pred CCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCCh
Q psy3611 93 NTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGE 136 (472)
Q Consensus 93 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 136 (472)
+++|++|++++|.+.+.. -...+..+++|++|++++|.+..
T Consensus 64 l~~L~~L~l~~N~i~~~~---~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 64 LPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccccCeEECCCCccCCCC---CchhhcCCCCCCEEECCCCcCCc
Confidence 899999999999998531 12456788999999999998764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.98 E-value=1.4e-11 Score=106.09 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=100.1
Q ss_pred ceeEEEcCCC--CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 294 ALKVFIAGRN--RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 294 ~L~~L~l~~~--~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
.++.+++++. .+. .++..+..+++|++|++++|+|++. +.+.++++|+.|++++|.+++.. .
T Consensus 24 ~~~~~~l~~~~~~i~-----~l~~sl~~L~~L~~L~Ls~n~I~~i------~~l~~l~~L~~L~Ls~N~i~~i~-----~ 87 (198)
T d1m9la_ 24 EAEKVELHGMIPPIE-----KMDATLSTLKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKKIE-----N 87 (198)
T ss_dssp TCSCEECCBCCTTCC-----CCHHHHHHTTTCCEEECSEEEESCC------CCHHHHTTCCEEECCEEEECSCS-----S
T ss_pred ccceeeeecccCchh-----hhhhHHhcccccceeECcccCCCCc------ccccCCccccChhhccccccccc-----c
Confidence 3455555543 232 2556777888999999999888742 23566788999999998877421 1
Q ss_pred HhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCChhHH-
Q psy3611 372 ALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV- 450 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~- 450 (472)
....++.|++|++++|.++. + ..+..+++|+.|++++|.|++.+ -...+..+++|++|++++|++.....
T Consensus 88 ~~~~~~~L~~L~l~~N~i~~-----l-~~~~~l~~L~~L~L~~N~i~~~~---~~~~l~~l~~L~~L~L~~N~l~~~~~~ 158 (198)
T d1m9la_ 88 LDAVADTLEELWISYNQIAS-----L-SGIEKLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHHHCCEEECSEEECCC-----H-HHHHHHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred cccccccccccccccccccc-----c-ccccccccccccccccchhcccc---ccccccCCCccceeecCCCccccCccc
Confidence 11223568899999998886 3 23455678899999999887621 12467788899999999987643221
Q ss_pred -----HHHHHHHHhCCceeEEe
Q psy3611 451 -----EEMEKLMKSFGMAAALV 467 (472)
Q Consensus 451 -----~~l~~~l~~~~~L~~L~ 467 (472)
..-...+..+|.|+.||
T Consensus 159 ~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 159 NNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCCEES
T ss_pred ccchhhHHHHHHHHCCCcCEeC
Confidence 11223466788888887
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.92 E-value=1.2e-10 Score=99.79 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=60.9
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQA 372 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 372 (472)
+++++|++++|.+... .-...|..+++|++|++++|.+.... ...+..++.|++|++++|++.... +++
T Consensus 29 ~~l~~L~Ls~N~i~~~---~~~~~f~~l~~L~~L~L~~N~i~~~~----~~~~~~~~~L~~L~Ls~N~l~~l~----~~~ 97 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEIS----NKM 97 (192)
T ss_dssp TTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEEC----SSS
T ss_pred CCCCEEEeCCCCCccc---ccccccCCCceEeeeecccccccccc----ccccccccccceeeeccccccccC----HHH
Confidence 4566666666666431 01223455666666666666655321 344555666666666666665211 134
Q ss_pred hcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCC
Q psy3611 373 LSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEIS 418 (472)
Q Consensus 373 l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 418 (472)
+..+++|++|+|++|.|+.. -+.++..+++|+.++|++|.+.
T Consensus 98 F~~l~~L~~L~L~~N~l~~i----~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 98 FLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred HhCCCcccccccCCcccccc----CHHHhcCCcccccccccccccc
Confidence 55566666666666666642 2234455566666666666544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.89 E-value=3.6e-11 Score=103.48 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=99.2
Q ss_pred hHHHhhhcCCccEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccch
Q psy3611 2 LAAVFKKLKTLEHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSA 81 (472)
Q Consensus 2 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~ 81 (472)
++..+..+++|++|+|++|.|.. + ..+..+++|++|++++|.+.... .....+++|++|++++|.++..
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-----i-~~l~~l~~L~~L~Ls~N~i~~i~-----~~~~~~~~L~~L~l~~N~i~~l 108 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-----I-SSLSGMENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-----C-CCHHHHTTCCEEECCEEEECSCS-----SHHHHHHHCCEEECSEEECCCH
T ss_pred hhhHHhcccccceeECcccCCCC-----c-ccccCCccccChhhccccccccc-----cccccccccccccccccccccc
Confidence 45688999999999999999885 2 24677899999999999986432 2223346799999999999862
Q ss_pred hHHHHHHHhhcCCcccEEECcCCccCcchHHHHHHHhhhCCCccEEEecCCcCChhhH------HHHHHHHHhchhhHHh
Q psy3611 82 GASSIAKYLTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFGEEGV------EEMEKLMKSFGMAAAL 155 (472)
Q Consensus 82 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~------~~l~~~l~~~~~l~~L 155 (472)
..+..+++|+.|++++|.+++.. -...+..+++|+.|++++|.+....+ ..-...+..+|.|+.|
T Consensus 109 ------~~~~~l~~L~~L~L~~N~i~~~~---~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L 179 (198)
T d1m9la_ 109 ------SGIEKLVNLRVLYMSNNKITNWG---EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp ------HHHHHHHHSSEEEESEEECCCHH---HHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred ------ccccccccccccccccchhcccc---ccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence 22455689999999999998621 12467889999999999997654322 1122335557777665
Q ss_pred hhc
Q psy3611 156 VLE 158 (472)
Q Consensus 156 ~~~ 158 (472)
...
T Consensus 180 D~~ 182 (198)
T d1m9la_ 180 DGM 182 (198)
T ss_dssp SSG
T ss_pred CCc
Confidence 433
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.82 E-value=6.5e-10 Score=95.06 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=54.2
Q ss_pred CCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 321 KTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 321 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
+++++|++++|+|+.. .....|.++++|++|++++|.+.... ...+...+.|++|++++|.+... -+.+
T Consensus 29 ~~l~~L~Ls~N~i~~~---~~~~~f~~l~~L~~L~L~~N~i~~~~----~~~~~~~~~L~~L~Ls~N~l~~l----~~~~ 97 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRI---SSDGLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEI----SNKM 97 (192)
T ss_dssp TTCSEEECCSCCCCSB---CCSCSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEE----CSSS
T ss_pred CCCCEEEeCCCCCccc---ccccccCCCceEeeeecccccccccc----ccccccccccceeeecccccccc----CHHH
Confidence 3555555555555311 00123445555555555555554211 13444455555555555555542 1234
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+..+++|+.|+|++|.|+.. -+.++...++|+++++++|++.
T Consensus 98 F~~l~~L~~L~L~~N~l~~i----~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 98 FLGLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred HhCCCcccccccCCcccccc----CHHHhcCCcccccccccccccc
Confidence 45555555555555555542 1233445555555555555543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.2e-10 Score=99.40 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=62.8
Q ss_pred cEEeccCCCcchhhHHHHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHH-HHHhh
Q psy3611 13 EHVEMPQNGIYHVGITALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSI-AKYLT 91 (472)
Q Consensus 13 ~~L~L~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l-~~~l~ 91 (472)
+.++.++..++. +|..+ .+++++|++++|.+.. ++- .+|..+++|++|++++|.+... + +..+.
T Consensus 11 ~~i~c~~~~l~~-----iP~~l--~~~l~~L~Ls~n~i~~---l~~-~~f~~l~~L~~L~ls~n~~~~~----i~~~~f~ 75 (242)
T d1xwdc1 11 RVFLCQESKVTE-----IPSDL--PRNAIELRFVLTKLRV---IQK-GAFSGFGDLEKIEISQNDVLEV----IEADVFS 75 (242)
T ss_dssp SEEEEESCSCSS-----CCSCS--CSCCSEEEEESCCCCE---ECT-TTTTTCTTCCEEEEESCTTCCE----ECSSSEE
T ss_pred CEEEEeCCCCCC-----cCCCC--CCCCCEEECcCCcCCc---cCh-hHhhccchhhhhhhccccccce----eeccccc
Confidence 556666665553 34333 2468888888887742 221 3567778888888888876542 1 12344
Q ss_pred cCCcccEEECcC-CccCcchHHHHHHHhhhCCCccEEEecCCcCC
Q psy3611 92 DNTTLEDVNLTC-NEISVQGGLDLVKAMKNKTKLKQINVSENQFG 135 (472)
Q Consensus 92 ~~~~L~~L~l~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~i~ 135 (472)
.++.++++.+.. +.+... .+..+..+++|++++++++.+.
T Consensus 76 ~l~~l~~l~~~~~n~l~~~----~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 76 NLPKLHEIRIEKANNLLYI----NPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp SCTTCCEEEEECCTTCCEE----CTTSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccccccccccc----ccccccccccccccccchhhhc
Confidence 567777777653 445431 2344566778888888777664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-09 Score=97.14 Aligned_cols=201 Identities=14% Similarity=0.082 Sum_probs=124.9
Q ss_pred CcccEEeCCCCCCChhhHHHHHHHHhccCCCcceEEEeeCCCCChhHHHHHHHHHHhhcccCcCCCCCcceeEEEcCC-C
Q psy3611 225 ARLVELDLSDNAFGPIGVEGLADLLRSSCCFALEELKLNNNGLGITGCKLLSKALHDCYESSKKEGSPLALKVFIAGR-N 303 (472)
Q Consensus 225 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~L~~L~l~~-~ 303 (472)
+++++|++++|.++......| ..+++|++|++++|.+.... -...+..++.++.+.+.. +
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f------~~l~~L~~L~ls~n~~~~~i-------------~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAF------SGFGDLEKIEISQNDVLEVI-------------EADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTT------TTCTTCCEEEEESCTTCCEE-------------CSSSEESCTTCCEEEEECCT
T ss_pred CCCCEEECcCCcCCccChhHh------hccchhhhhhhcccccccee-------------eccccccccccccccccccc
Confidence 579999999999865433333 24679999999999874220 011233456788887764 4
Q ss_pred CCChhhHHHHHHHHhcCCCccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHHHhcCC-CCCcEE
Q psy3611 304 RLENEGAKMLAAVFKKLKTLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQALSKL-PSLAIL 382 (472)
Q Consensus 304 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L 382 (472)
.+... .+..+..+++|++++++++.+.... ....+..+..+..+...++.+..... ..+..+ ..++.|
T Consensus 90 ~l~~~----~~~~~~~l~~L~~l~l~~~~l~~~~---~~~~~~~l~~l~~~~~~n~~l~~i~~----~~~~~~~~~l~~L 158 (242)
T d1xwdc1 90 NLLYI----NPEAFQNLPNLQYLLISNTGIKHLP---DVHKIHSLQKVLLDIQDNINIHTIER----NSFVGLSFESVIL 158 (242)
T ss_dssp TCCEE----CTTSEECCTTCCEEEEESCCCCSCC---CCTTTCBSSCEEEEEESCTTCCEECT----TSSTTSBSSCEEE
T ss_pred ccccc----ccccccccccccccccchhhhcccc---cccccccccccccccccccccccccc----cccccccccceee
Confidence 55542 2335567889999999999876431 01122334455555666666653221 233333 368889
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCCCEE-ECcCCCCCchhHHHHH-HHHhcCCcccEEEccCCCCChhHHHHHHHHHHhC
Q psy3611 383 NLGDCLLKSAGASSIAKYLTDNTTLEDV-NLTCNEISVQGGLDLV-KAMKNKTKLKQINVSENQFGEEGVEEMEKLMKSF 460 (472)
Q Consensus 383 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L-~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 460 (472)
++++|.+.. ++........+..+ .+.+|.++. ++ ..+.++++|++|++++|+++.... ..++.+
T Consensus 159 ~l~~n~l~~-----i~~~~~~~~~l~~~~~l~~n~l~~-----l~~~~f~~l~~L~~L~Ls~N~l~~l~~----~~~~~l 224 (242)
T d1xwdc1 159 WLNKNGIQE-----IHNCAFNGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHSLPS----YGLENL 224 (242)
T ss_dssp ECCSSCCCE-----ECTTTTTTCCEEEEECTTCTTCCC-----CCTTTTTTSCCCSEEECTTSCCCCCCS----SSCTTC
T ss_pred ecccccccc-----cccccccchhhhcccccccccccc-----ccHHHhcCCCCCCEEECCCCcCCccCH----HHHcCC
Confidence 999988876 33333334555555 456777776 33 346788999999999998864322 235667
Q ss_pred CceeEEecC
Q psy3611 461 GMAAALVLE 469 (472)
Q Consensus 461 ~~L~~L~l~ 469 (472)
++|+.+++.
T Consensus 225 ~~L~~l~~~ 233 (242)
T d1xwdc1 225 KKLRARSTY 233 (242)
T ss_dssp CEEESSSEE
T ss_pred cccccCcCC
Confidence 777766654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=5.4e-08 Score=79.56 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=36.3
Q ss_pred cceeEEEcCCCCCChhhHHHHHHHHhcCCCccEEeCCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCCcccHHHHHH
Q psy3611 293 LALKVFIAGRNRLENEGAKMLAAVFKKLKTLERVEMPQN-GIYHVGITALSDAFEENKNLRHLNLNDNTITYKGAIPLGQ 371 (472)
Q Consensus 293 ~~L~~L~l~~~~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 371 (472)
...+.++.+++.+.. .+..+...++|++|++.++ .++... ...|.++++|+.|++++|++.... +.
T Consensus 8 ~~~~~l~c~~~~~~~-----~p~~l~~l~~l~~L~l~~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~i~----~~ 74 (156)
T d2ifga3 8 HGSSGLRCTRDGALD-----SLHHLPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVA----PD 74 (156)
T ss_dssp SSSSCEECCSSCCCT-----TTTTSCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEEC----TT
T ss_pred CCCCeEEecCCCCcc-----CcccccCccccCeeecCCCccccccC----chhhccccccCcceeeccccCCcc----cc
Confidence 334445555544442 2333333445555555433 243211 123444455555555555444211 13
Q ss_pred HhcCCCCCcEEEcCCCCCC
Q psy3611 372 ALSKLPSLAILNLGDCLLK 390 (472)
Q Consensus 372 ~l~~~~~L~~L~l~~~~i~ 390 (472)
++..+++|++|+|++|.++
T Consensus 75 ~f~~l~~L~~L~Ls~N~l~ 93 (156)
T d2ifga3 75 AFHFTPRLSRLNLSFNALE 93 (156)
T ss_dssp GGGSCSCCCEEECCSSCCS
T ss_pred cccccccccceeccCCCCc
Confidence 3444444555555555444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=6.2e-08 Score=79.21 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=56.3
Q ss_pred CccEEeCCCCCCChhHHHHHHHHHhcCCCccEEEccCC-CCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHH
Q psy3611 322 TLERVEMPQNGIYHVGITALSDAFEENKNLRHLNLNDN-TITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKY 400 (472)
Q Consensus 322 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 400 (472)
..+.++..++.+.+ .+..+...++|++|++.++ .++.... .++..+++|+.|++++|.++.. -+.+
T Consensus 9 ~~~~l~c~~~~~~~-----~p~~l~~l~~l~~L~l~~n~~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~i----~~~~ 75 (156)
T d2ifga3 9 GSSGLRCTRDGALD-----SLHHLPGAENLTELYIENQQHLQHLEL----RDLRGLGELRNLTIVKSGLRFV----APDA 75 (156)
T ss_dssp SSSCEECCSSCCCT-----TTTTSCSCSCCSEEECCSCSSCCEECG----GGSCSCCCCSEEECCSSCCCEE----CTTG
T ss_pred CCCeEEecCCCCcc-----CcccccCccccCeeecCCCccccccCc----hhhccccccCcceeeccccCCc----cccc
Confidence 34445555555442 2334445556666666544 3542211 3455566666666666666542 1344
Q ss_pred hhcCCCCCEEECcCCCCCchhHHHHHHHHhcCCcccEEEccCCCCC
Q psy3611 401 LTDNTTLEDVNLTCNEISVQGGLDLVKAMKNKTKLKQINVSENQFG 446 (472)
Q Consensus 401 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 446 (472)
+..+++|+.|+|++|+|+. ++..+-....|++|++++|++.
T Consensus 76 f~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 76 FHFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp GGSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCC
T ss_pred ccccccccceeccCCCCcc-----cChhhhccccccccccCCCccc
Confidence 5556666666666666654 3333333345666666666653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=7.7e-07 Score=73.02 Aligned_cols=86 Identities=26% Similarity=0.281 Sum_probs=38.1
Q ss_pred cCCCccEEEccCCCCCcccHHHHHHHhcCCCCCcEEEcCCCCCChHHHHHHHHHhhcCCCCCEEECcCCCCCch---hHH
Q psy3611 347 ENKNLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISVQ---GGL 423 (472)
Q Consensus 347 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---~~~ 423 (472)
.+++|++|++++|.+++... +...+..+++|+.|++++|.|.+... +. . .....|+.+++++|.+... ...
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N~i~~l~~--l~-~-l~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERE--LD-K-IKGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTSCCCCGGG--HH-H-HTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred hCCCCCEeeCCCccccCCch--hHHHHhhCCcccccccccCccccchh--hh-h-hhccccceeecCCCCcCcCcccchh
Confidence 45555555555555553211 11233345555555555555554211 11 1 1223455566666555421 011
Q ss_pred HHHHHHhcCCcccEE
Q psy3611 424 DLVKAMKNKTKLKQI 438 (472)
Q Consensus 424 ~l~~~l~~~~~L~~L 438 (472)
-....++.+|+|+.|
T Consensus 137 y~~~i~~~~P~L~~L 151 (162)
T d1koha1 137 YISAIRERFPKLLRL 151 (162)
T ss_dssp HHHHHHTTSTTCCEE
T ss_pred HHHHHHHHCCCCCEE
Confidence 122334455666655
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9.7e-07 Score=72.38 Aligned_cols=98 Identities=24% Similarity=0.280 Sum_probs=71.4
Q ss_pred HHHHhhhcCCCCCeeeCCCCccCccchHHHHHHhccCCCCcEEeccCccccchhHHHHHHHhhcCCcccEEECcCCccCc
Q psy3611 29 ALSDAFEENKKLRHLNLNDNTITYKGAIPLGQALSKLPSLAILNLGDCLLKSAGASSIAKYLTDNTTLEDVNLTCNEISV 108 (472)
Q Consensus 29 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ls~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~ 108 (472)
.+......+++|++|++++|.++.....+ ..+..+++|+.|++++|.+++.. .+ ..+. ...|+.|++++|.+..
T Consensus 56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~--~~~~~l~~L~~L~Ls~N~i~~l~--~l-~~l~-~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 56 TLRIIEENIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKSER--EL-DKIK-GLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHHHHHHHCTTCCCCCCCSSCCCCCSGGG--THHHHSTTCCCCCCTTSCCCCGG--GH-HHHT-TCCCSSCCCTTSTTSS
T ss_pred hhHHHHHhCCCCCEeeCCCccccCCchhH--HHHhhCCcccccccccCccccch--hh-hhhh-ccccceeecCCCCcCc
Confidence 45555677999999999999997655444 66788999999999999998743 22 2233 4569999999999874
Q ss_pred c---hHHHHHHHhhhCCCccEEEecCCcC
Q psy3611 109 Q---GGLDLVKAMKNKTKLKQINVSENQF 134 (472)
Q Consensus 109 ~---~~~~l~~~l~~~~~L~~L~l~~~~i 134 (472)
. ........+..+++|+.|| +..+
T Consensus 130 ~~~~~~~y~~~i~~~~P~L~~LD--g~~v 156 (162)
T d1koha1 130 TFRDQSTYISAIRERFPKLLRLD--GHEL 156 (162)
T ss_dssp SSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred CcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence 2 2233445567789999886 4444
|