Psyllid ID: psy3792

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MLDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlddifldelvddpepmlnedhhpearesqdedeqpppnpsepsedavrvapkkkvirnpqpklnaqrltgprgIQCIEQYFKDvkfkgkghelADLNTIMSNLEHWAnrlypksnfVDVLKRLEVlghkrpvmtHIKKIRLGMIEELnqdsnlvlsdtetpaqpqqptsddIFNDLlasqpsqhitPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQKK
Flexible Loop (DISEMBL)
MLDDIFLDELVDDPEPMLNEDHHPEaresqdedeqpppnpsepsedavrvapkkkvirnpqpklnaqrltgprgIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLevlghkrpvmtHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLAsqpsqhitpvVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQKK
Low Complexity Region (SEG)
MLDDIFLDELVDDPEPMLNEDHHPEAResqdedeqpppnpsepsedAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQKK
Disordered region (IsUnstruct)
**********************************************************************GPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEEL****************************************************************************
Disordered Region (DISOPRED)
MLDDIFLDELVDDPE***********************************************KLNAQRLTGPRGIQCIEQYFK**********LADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM********************************************************************************
Disordered Region (DISEMBL)
MLDDIFLDELVDDPEPMLNED*****************************APKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLS**********PTSDDIFNDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLAR*********
Disordered Region (DISPRO)
*LD**FLDELVDDPEP************************************KKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMI*****************************************************E*MLRNRQIAEEKRLARLAME*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDLLASQPSQHITPVVxxxxxxxxxxxxxxxxxxxxxRLARLAMEAEQKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q8INX3	307	Protein TIPIN homolog OS=	yes	N/A	0.633	0.462	0.455	2e-32
Q0IHI4	360	TIMELESS-interacting prot	N/A	N/A	0.75	0.466	0.413	8e-28
Q91WA1	278	TIMELESS-interacting prot	yes	N/A	0.763	0.615	0.392	6e-26
Q9BVW5	301	TIMELESS-interacting prot	yes	N/A	0.767	0.571	0.382	2e-25
Q4QR88	276	TIMELESS-interacting prot	yes	N/A	0.763	0.619	0.397	4e-25
Q3ZCC4	290	TIMELESS-interacting prot	yes	N/A	0.763	0.589	0.375	2e-24
Q6DBR4	294	TIMELESS-interacting prot	yes	N/A	0.700	0.534	0.374	6e-24
Q5F416	283	TIMELESS-interacting prot	yes	N/A	0.776	0.614	0.329	5e-23
Q2H3R6	431	Chromosome segregation in	N/A	N/A	0.566	0.294	0.302	2e-11
Q9TXI0	233	Protein TIPIN homolog OS=	yes	N/A	0.544	0.523	0.325	5e-11

>sp|Q8INX3|TIPIN_DROME Protein TIPIN homolog OS=Drosophila melanogaster GN=CG10336 PE=2 SV=2

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 5/147 (3%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQ 61
           +DD+F D +  DP+  L  D   E   + DED    P     S+DA  V PKK+ +RNP+
Sbjct: 10  VDDLFNDNIPTDPD-QLPSDGEGEKLFADDEDNGVEPG----SQDAQIVEPKKRAVRNPR 64

Query: 62  PKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVL 121
           P+L  + L GPRGIQ IE YFKD+KFKGKG+E  DL+ ++  L+HW +R+YP   F DVL
Sbjct: 65  PRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVL 124

Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEEL 148
             +E LG K+P+  H+ + RLG +E++
Sbjct: 125 NNIERLGKKKPLQVHMARYRLGQLEQM 151

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress.
Drosophila melanogaster (taxid: 7227)

>sp|Q0IHI4|TIPIN_XENLA TIMELESS-interacting protein OS=Xenopus laevis GN=tipin PE=2 SV=1

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 6/174 (3%)

Query: 52  PKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRL 111
           P ++V++ PQPKL+ QRL   RG+  +   F DVKFKGKGHE  DL  ++  +E+WA+RL
Sbjct: 62  PARRVVKRPQPKLDGQRLASQRGLPALRHMFDDVKFKGKGHETEDLKILLRQMENWAHRL 121

Query: 112 YPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM-IEELNQDSNLVLSDTETPAQPQQPTS 170
           +PK  F D L RLE +G+K+ V T +KKIR+ + I   +  S  V+  TE  A    P+ 
Sbjct: 122 FPKLQFEDFLNRLESMGNKKEVQTCLKKIRMDLPIVHDDFLSEEVVVQTEDHAI-DMPSE 180

Query: 171 DDIFND-LLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQK 223
           D  F D L    PSQ   PV  +++E   +R+ RNR++A E+R+ ++  +AE +
Sbjct: 181 DFSFPDELHVPSPSQ---PVKVDLSEETLQRIERNRRLALERRMEKMQAQAESQ 231

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be required in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Xenopus laevis (taxid: 8355)

>sp|Q91WA1|TIPIN_MOUSE TIMELESS-interacting protein OS=Mus musculus GN=Tipin PE=1 SV=2

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 10/181 (5%)

Query: 40  PSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNT 99
           P E S   V V PK+ V RN  PKL+A RLT  RG+  +   F   KFKGKGHE  DL T
Sbjct: 41  PEEGSGSGVPVPPKRTVKRN-LPKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKT 99

Query: 100 IMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM--IEELNQDSNLVLS 157
           ++ ++EHWA+RL+PK  F D + R+E LG+K+ V T +K+IRL +  + E   ++N  + 
Sbjct: 100 LIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEVG 159

Query: 158 DTETPAQPQQPTSDDIFNDLLASQPS--QHITPVVKEITEAQRERMLRNRQIAEEKRLAR 215
           +   P       S   F+  L S     +  +   + +TE Q++R+ RN+Q+A E+R A+
Sbjct: 160 EANGP-----DVSATGFDPFLTSSSDSRKFASEPTRSLTEEQQQRIERNKQLALERRQAK 214

Query: 216 L 216
           L
Sbjct: 215 L 215

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Mus musculus (taxid: 10090)

>sp|Q9BVW5|TIPIN_HUMAN TIMELESS-interacting protein OS=Homo sapiens GN=TIPIN PE=1 SV=2

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 108/183 (59%), Gaps = 11/183 (6%)

Query: 41  SEPSEDA-----VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELA 95
           +EP E++     VRV PK+ V RN  PKL+AQRL   RG+  +   F   KFKGKGHE  
Sbjct: 40  TEPDEESGNGAPVRVPPKRTVKRNI-PKLDAQRLISERGLPALRHVFDKAKFKGKGHEAE 98

Query: 96  DLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLV 155
           DL  ++ ++EHWA+RL+PK  F D + R+E LG K+ V T +K+IRL +   L++D   V
Sbjct: 99  DLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL-PILHED--FV 155

Query: 156 LSDTETPAQPQQPTSDDIFNDLLA--SQPSQHITPVVKEITEAQRERMLRNRQIAEEKRL 213
            ++ E     +   +    +  L   S+     + + + +TE Q++R+ RN+Q+A E+R 
Sbjct: 156 SNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNKQLALERRQ 215

Query: 214 ARL 216
           A+L
Sbjct: 216 AKL 218

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Homo sapiens (taxid: 9606)

>sp|Q4QR88|TIPIN_RAT TIMELESS-interacting protein OS=Rattus norvegicus GN=Tipin PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 108/181 (59%), Gaps = 10/181 (5%)

Query: 40  PSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNT 99
           P E S   V V PK+ V RN  PKL+A RLT  RG+  +   F   KFKGKGHE  DL T
Sbjct: 41  PDEGSGAPVPVPPKRIVKRNI-PKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKT 99

Query: 100 IMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM---IEELNQDSNLVL 156
           ++ ++EHWA+RL+PK  F D + R+E LG+K+ V T +K+IRL +    E+   +++ V 
Sbjct: 100 LIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEV- 158

Query: 157 SDTETPAQPQQPTSDDIFNDLLASQPSQHI-TPVVKEITEAQRERMLRNRQIAEEKRLAR 215
              ET +     T  D F  + +S  S+   +   + +TE Q++R+ +N+Q+A E+R A+
Sbjct: 159 --EETNSLDAAATGFDAF--VTSSSDSKRFASEASRNLTEEQQQRIEKNKQLALERRQAK 214

Query: 216 L 216
           L
Sbjct: 215 L 215

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZCC4|TIPIN_BOVIN TIMELESS-interacting protein OS=Bos taurus GN=TIPIN PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 13/184 (7%)

Query: 41  SEPSEDAVRVAP-----KKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELA 95
           +EP E++ R AP     K+ V RN  PKLNA+RL   RG+  +   F+  KFKGKGHE  
Sbjct: 40  AEPEEESGRGAPVPVPPKRTVKRNI-PKLNAERLISERGLPALRHVFEKAKFKGKGHEAE 98

Query: 96  DLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM-IEELNQDSNL 154
           DL T++ ++EHWA+RL+PK  F D + R+E LG+K+ V T +K+IRL + I  L++D   
Sbjct: 99  DLKTLIRHMEHWAHRLFPKLQFEDFIDRVECLGNKKEVQTCLKRIRLDLPI--LHED--F 154

Query: 155 VLSDTETPAQPQQPTSDDIFNDLLASQPS--QHITPVVKEITEAQRERMLRNRQIAEEKR 212
           V ++ E         +    +  L +     +  +   + +TE +++R+ RN+Q+A E+R
Sbjct: 155 VSNNDEVEENNGHDVTATELDHFLTNSYGSVEFASESSRSLTEEEQQRIERNKQLALERR 214

Query: 213 LARL 216
            A+L
Sbjct: 215 QAKL 218

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Bos taurus (taxid: 9913)

>sp|Q6DBR4|TIPIN_DANRE TIMELESS-interacting protein OS=Danio rerio GN=tipin PE=2 SV=1

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 6/163 (3%)

Query: 53  KKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLY 112
           K++ ++ P+PKL+A RL   +G+  +   F+DVKFKGKGHE  +L  +M  +E+WA+RLY
Sbjct: 63  KRRTVKRPRPKLDANRLISEKGLPALRTLFEDVKFKGKGHETENLKLLMLKMENWAHRLY 122

Query: 113 PKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDD 172
           PK  F + + ++E LG K+ V T +K+IRL M    ++D     ++ + P +   P+ D 
Sbjct: 123 PKMQFEEFIDKVENLGGKKEVQTCLKRIRLDM-PITHEDYVAEEAEIQVPEE-SVPSGDG 180

Query: 173 IFNDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLAR 215
            F +     P  H TP    +TE Q++R+  N+++A E+RLA+
Sbjct: 181 GFPE----DPFIHSTPAPASLTEEQQQRIELNKRLALERRLAK 219

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be required in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Danio rerio (taxid: 7955)

>sp|Q5F416|TIPIN_CHICK TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1

 Score =  107 bits (268), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 20/194 (10%)

Query: 38  PNPSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADL 97
           P+ ++ SE     +  +K ++   PKL+A RL   RG+  +   F +VKFKGKGHE  DL
Sbjct: 48  PDGNQQSETKDSSSAARKAVKRSIPKLDANRLVSERGLPALRHMFDNVKFKGKGHEAEDL 107

Query: 98  NTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLS 157
            T++ ++EHWA+RL+PK  F D + R+E LG+K+ V T +K+IRL +          +L 
Sbjct: 108 KTLLRHMEHWAHRLFPKLQFDDFIDRVESLGNKKEVQTCLKRIRLDLP---------ILH 158

Query: 158 DTETPAQPQQPTSDDIFNDLLASQPSQHITPVVKE--------ITEAQRERMLRNRQIAE 209
           +  T  +     S+ +    +A++     +  V E        +TE Q++R+ RNRQ+A 
Sbjct: 159 EDFTANEGGGGESNGLD---MATEEVHSFSGNVGELDSLPGTTLTEEQQQRIKRNRQLAL 215

Query: 210 EKRLARLAMEAEQK 223
           E+R A++   ++ +
Sbjct: 216 ERRQAKMQCNSQSQ 229

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress. May be required in the replication checkpoint induced by hydroxyurea or ultraviolet light.

Gallus gallus (taxid: 9031)

>sp|Q2H3R6|CSM3_CHAGB Chromosome segregation in meiosis protein 3 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CSM3 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 35/162 (21%)

Query: 54  KKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYP 113
           KK  R P+ KL+  RL   +GI  + +    +K KGKGHE +D   ++S  + W + L+P
Sbjct: 64  KKKPRAPRVKLDETRLLSDKGIPKLRKMAPRLKLKGKGHEFSDAARLLSFYQEWLDDLFP 123

Query: 114 KSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEEL--------NQDSNLVLSDTETPAQP 165
           K+ F+D L  +E  GHK    T ++  R   I+EL        +++ N +      P QP
Sbjct: 124 KATFLDALAMVEKTGHK----TTMRSARQKWIDELKPRAAIEEDEEDNRIHRGAVGPQQP 179

Query: 166 ------------------QQPTSDDIFNDLLASQPSQHITPV 189
                             + PT+DD+F D L      + TPV
Sbjct: 180 PKVASIFETTAKAAGERAKTPTTDDLFGDDL-----YNATPV 216

Forms a fork protection complex (FPC) with TOF1 and which is required for chromosome segregation during meiosis and DNA damage repair. FPC coordinates leading and lagging strand synthesis and moves with the replication fork. FPC stabilizes replication forks in a configuration that is recognized by replication checkpoint sensors.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q9TXI0|TIPIN_CAEEL Protein TIPIN homolog OS=Caenorhabditis elegans GN=F23C8.9 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 28  ESQDEDEQPPPNPSEPSEDAVRVAPKKKVIR----------NPQPKLNAQRLTGPRGIQC 77
           E+ + D +P P   E  ED       ++V+           NP+  LN + LTGP+GI  
Sbjct: 9   ENDELDREPSPMGDEAIEDNSGEGGTRRVVEPKLLRTKRLANPRLALNERILTGPKGISA 68

Query: 78  IEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHI 137
           + +  KD K   K    A+L  +M    +W + ++PK    DVL R+E LG +R V   +
Sbjct: 69  LRETLKDFKPNPKDDPYANLEKLMKKYAYWGHLMFPKMKTEDVLNRVETLGTRRQVKVFM 128

Query: 138 KKIRLGMIEELNQDS 152
            K RLG   E  +DS
Sbjct: 129 IKHRLG---ETGEDS 140

Required for normal progression of S-phase. Important for cell survival after DNA damage or replication stress.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
194880084	320	GG21125 [Drosophila erecta] gi|190657549	0.633	0.443	0.455	7e-31
260310453	320	SD26634p [Drosophila melanogaster]	0.633	0.443	0.455	7e-31
195035517	296	GH11605 [Drosophila grimshawi] gi|193905	0.656	0.496	0.433	1e-30
24585015	307	CG10336, isoform A [Drosophila melanogas	0.633	0.462	0.455	1e-30
194758781	307	GF15066 [Drosophila ananassae] gi|190615	0.665	0.485	0.439	2e-30
195344878	320	GM17286 [Drosophila sechellia] gi|194134	0.629	0.440	0.459	2e-30
195484206	320	GE13199 [Drosophila yakuba] gi|194176696	0.629	0.440	0.452	8e-30
195115006	294	GI17174 [Drosophila mojavensis] gi|19391	0.651	0.496	0.436	1e-29
322801803	293	hypothetical protein SINV_15471 [Solenop	0.946	0.723	0.347	3e-29
240848993	221	TIMELESS-interacting protein [Acyrthosip	0.919	0.932	0.361	6e-29

>gi|194880084|ref|XP_001974362.1| GG21125 [Drosophila erecta] gi|190657549|gb|EDV54762.1| GG21125 [Drosophila erecta]

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 5/147 (3%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQ 61
           +DD+F D L  DP+  L  D   E   + DE+    P     S+DA  V PKK+ +RNP+
Sbjct: 23  VDDLFNDNLPTDPD-QLPSDGEGEKLFADDEENGGKPG----SQDAQAVEPKKRAVRNPR 77

Query: 62  PKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVL 121
           P+L  + L GPRGIQ IE YFKD+KFKGKG+E  DL+ ++  L+HW +R+YP   F DVL
Sbjct: 78  PRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVL 137

Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEEL 148
             +E LG K+P+  H+ + RLG +E++
Sbjct: 138 NNIERLGKKKPLQVHMARYRLGQLEQM 164

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260310453|gb|ACX36509.1| SD26634p [Drosophila melanogaster]

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 5/147 (3%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQ 61
           +DD+F D +  DP+  L  D   E   + DED    P     S+DA  V PKK+ +RNP+
Sbjct: 23  VDDLFNDNIPTDPD-QLPSDGEGEKLFADDEDNGVEPG----SQDAQIVEPKKRAVRNPR 77

Query: 62  PKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVL 121
           P+L  + L GPRGIQ IE YFKD+KFKGKG+E  DL+ ++  L+HW +R+YP   F DVL
Sbjct: 78  PRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVL 137

Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEEL 148
             +E LG K+P+  H+ + RLG +E++
Sbjct: 138 NNIERLGKKKPLQVHMARYRLGQLEQM 164

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035517|ref|XP_001989224.1| GH11605 [Drosophila grimshawi] gi|193905224|gb|EDW04091.1| GH11605 [Drosophila grimshawi]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 3/150 (2%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSED---AVRVAPKKKVIR 58
           +DD+F D + +D E  L  D    A E+   D++  PN     E+   AV+V PKK+ +R
Sbjct: 10  VDDLFNDNIANDNEDELPSDGEANAGENLFGDDEDAPNADGAVEEGVEAVKVEPKKRAVR 69

Query: 59  NPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFV 118
           NP+P+L    L GPRG+  +E YFKD+K+KGKGHE ADL+ I+  L+HW +R+YP   F 
Sbjct: 70  NPRPRLTVDTLRGPRGLHTMEHYFKDIKYKGKGHEKADLDEILRRLQHWGHRMYPNYTFD 129

Query: 119 DVLKRLEVLGHKRPVMTHIKKIRLGMIEEL 148
           DVL  +E LG K+P+  H+ + R+G +++L
Sbjct: 130 DVLNNIERLGKKKPLQVHMARYRMGQLDDL 159

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24585015|ref|NP_724124.1| CG10336, isoform A [Drosophila melanogaster] gi|221475959|ref|NP_609895.2| CG10336, isoform C [Drosophila melanogaster] gi|251757348|sp|Q8INX3.2|TIPIN_DROME RecName: Full=Protein TIPIN homolog; AltName: Full=CSM3 homolog gi|7298470|gb|AAF53690.1| CG10336, isoform A [Drosophila melanogaster] gi|21392236|gb|AAM48472.1| SD08134p [Drosophila melanogaster] gi|220902068|gb|AAN11011.2| CG10336, isoform C [Drosophila melanogaster] gi|220950666|gb|ACL87876.1| CG10336-PA [synthetic construct] gi|220959370|gb|ACL92228.1| CG10336-PA [synthetic construct]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 5/147 (3%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQ 61
           +DD+F D +  DP+  L  D   E   + DED    P     S+DA  V PKK+ +RNP+
Sbjct: 10  VDDLFNDNIPTDPD-QLPSDGEGEKLFADDEDNGVEPG----SQDAQIVEPKKRAVRNPR 64

Query: 62  PKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVL 121
           P+L  + L GPRGIQ IE YFKD+KFKGKG+E  DL+ ++  L+HW +R+YP   F DVL
Sbjct: 65  PRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVL 124

Query: 122 KRLEVLGHKRPVMTHIKKIRLGMIEEL 148
             +E LG K+P+  H+ + RLG +E++
Sbjct: 125 NNIERLGKKKPLQVHMARYRLGQLEQM 151

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758781|ref|XP_001961637.1| GF15066 [Drosophila ananassae] gi|190615334|gb|EDV30858.1| GF15066 [Drosophila ananassae]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 8/157 (5%)

Query: 2   LDDIFLDELVDDPEPM--LNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRN 59
           +DD+F D +   PE +  L  D+  E   + DED +    P   S+DA+ V PKK+ +RN
Sbjct: 10  VDDLFNDNV---PEHLDQLPSDNEGEKLFADDEDNKESGEPG--SQDAITVEPKKRAVRN 64

Query: 60  PQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVD 119
           P+P+L    L GPRGIQ IE YFKD+KFKGKG+E +DL+ ++  L+HW +R+YP   F D
Sbjct: 65  PRPRLTVDTLRGPRGIQTIEGYFKDIKFKGKGYEKSDLDEVLRRLQHWGHRMYPTYTFDD 124

Query: 120 VLKRLEVLGHKRPVMTHIKKIRLGMIEEL-NQDSNLV 155
           VL  +E LG K+P+  H+ + RLG +E+    D+N +
Sbjct: 125 VLNNIERLGKKKPLQVHMTRYRLGQLEDFPTHDANAL 161

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195344878|ref|XP_002039003.1| GM17286 [Drosophila sechellia] gi|194134133|gb|EDW55649.1| GM17286 [Drosophila sechellia]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 95/148 (64%), Gaps = 7/148 (4%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEP-SEDAVRVAPKKKVIRNP 60
           +DD+F D +  DP+  L  D   E   + DED     N  EP S+D   V PKK+ +RNP
Sbjct: 23  VDDLFNDNIPTDPD-QLPSDGEGEKLFADDED-----NGEEPGSQDGQIVEPKKRAVRNP 76

Query: 61  QPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDV 120
           +P+L  + L GPRGIQ IE YFKD+KFKGKG+E  DL+ ++  L+HW +R+YP   F DV
Sbjct: 77  RPRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDV 136

Query: 121 LKRLEVLGHKRPVMTHIKKIRLGMIEEL 148
           L  +E LG K+P+  H+ + RLG +E++
Sbjct: 137 LNNIERLGKKKPLQVHMARYRLGQLEQM 164

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195484206|ref|XP_002090595.1| GE13199 [Drosophila yakuba] gi|194176696|gb|EDW90307.1| GE13199 [Drosophila yakuba]

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 7/148 (4%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEP-SEDAVRVAPKKKVIRNP 60
           +DD+F D L  DP+  L  D   E   + DE+     N  EP S+DA  V PKK+ +RNP
Sbjct: 23  VDDLFNDNLPTDPD-QLPSDGEGEKLFADDEE-----NGGEPGSQDAQTVEPKKRAVRNP 76

Query: 61  QPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDV 120
           +P+L  + L GPRGIQ +E YFKD+KFKGKG+E  DL+ ++  L+HW +R+Y    F DV
Sbjct: 77  RPRLTVETLQGPRGIQTLEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYSTYTFDDV 136

Query: 121 LKRLEVLGHKRPVMTHIKKIRLGMIEEL 148
           L  +E LG K+P+  H+ + RLG +E++
Sbjct: 137 LNNIERLGKKKPLQVHMARYRLGQLEQM 164

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115006|ref|XP_002002058.1| GI17174 [Drosophila mojavensis] gi|193912633|gb|EDW11500.1| GI17174 [Drosophila mojavensis]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 3/149 (2%)

Query: 2   LDDIFLDELVDDPEPMLNEDHHPEARES--QDEDEQPPPNPSEPSEDAVRVAPKKKVIRN 59
           +DD+F D +  + +  L  D  P+  E    D+DE       E  + AV+V PKK+ +RN
Sbjct: 10  VDDLFNDNIGIEND-QLPSDGEPDEGEKLFGDDDEDAANEAGEGEQKAVKVEPKKRAVRN 68

Query: 60  PQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVD 119
           P+P+L    L GPRG+  IE YFKD+KFKGKG+E  DLN ++  L+HW +R+YP   F D
Sbjct: 69  PRPRLTVDTLRGPRGLHTIENYFKDIKFKGKGYEKDDLNEVLRRLQHWGHRMYPNYTFDD 128

Query: 120 VLKRLEVLGHKRPVMTHIKKIRLGMIEEL 148
           +L  +E LG K+P+  H+ + RLG +EEL
Sbjct: 129 ILNNIERLGKKKPLQVHMTRYRLGQLEEL 157

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801803|gb|EFZ22394.1| hypothetical protein SINV_15471 [Solenopsis invicta]

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 133/265 (50%), Gaps = 53/265 (20%)

Query: 10  LVDDPEPMLNED--HHPEARESQDE----DEQPPPNPSEPSEDAVRVAPKKK---VIRNP 60
           ++D PE   ++D   H E R+S DE    +E         ++   R+ P K    V+RNP
Sbjct: 20  MMDIPEYEGDDDIIEHYENRDSNDERGSYEEAENATSDNETDTTRRIDPSKSKSHVVRNP 79

Query: 61  QPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDV 120
            PKLN +RL GP GIQ IEQYF+  KF GKG+E  DL+ IM  LEHW+ RL+PK +F D 
Sbjct: 80  VPKLNTERLKGPNGIQTIEQYFEGFKFYGKGYEKTDLDRIMKRLEHWSYRLFPKYHFDDF 139

Query: 121 LKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSD---------------------- 158
           L R+E LG K+ +   IKK R  MI     D+NL++ D                      
Sbjct: 140 LTRVEQLGTKKDLQVFIKKYRQDMI---TSDNNLIIHDDMDKYNDENQQESALLDDFDLL 196

Query: 159 ------------TETPAQPQQPTSDDIFNDLL----ASQPSQ--HIT-PVVKEITEAQRE 199
                       T+  A     +++D FN LL     +Q SQ  H +  +  E+++  ++
Sbjct: 197 ITEQIQKQKQAETQISAITPSTSNEDAFNKLLTQSTGTQNSQVPHTSITIANELSDEVKQ 256

Query: 200 RMLRNRQIAEEKRLARLAMEAEQKK 224
           R+ RN+Q+A ++RL R     E+ K
Sbjct: 257 RIERNKQLAIQRRLQRQKEHEEENK 281

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848993|ref|NP_001155740.1| TIMELESS-interacting protein [Acyrthosiphon pisum] gi|239789778|dbj|BAH71491.1| ACYPI008045 [Acyrthosiphon pisum]

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 18/224 (8%)

Query: 4   DIFLDELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQPK 63
           DIF D   ++    L EDHH +    +D ++   P  ++   +  R+ P K  +RNPQPK
Sbjct: 2   DIFEDNEFEN----LVEDHHLD----EDVNKYLEPQDNDDQNEEKRIVPVKIRVRNPQPK 53

Query: 64  LNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKR 123
           LN +RL G RG+  +  +F++++ KGKGHE  DLN +++ LE W +RL+P+  F D + +
Sbjct: 54  LNPERLRGTRGLSVLPTWFENIQLKGKGHESEDLNAVINRLEQWTHRLFPRYTFDDCIDK 113

Query: 124 LEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFNDL----LA 179
           LE LG K  +   +K+IR+ M  ++N     V  D   P+  Q    D I N +    + 
Sbjct: 114 LEKLGKKNEIKVMLKRIRMDM--DINNCVTQVEDDVVEPSPSQIDIFDQIANTVDIFPVT 171

Query: 180 SQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQK 223
           S PS   T     +TE QR+RM+RNR +AEE+R A++    E++
Sbjct: 172 STPSVSNTG----LTEEQRQRMMRNRMLAEERRQAKIRARQEEE 211

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0032698	307	CG10336 [Drosophila melanogast	0.75	0.547	0.371	6.3e-35
UNIPROTKB|Q0IHI4	360	tipin "TIMELESS-interacting pr	0.745	0.463	0.411	2.1e-29
UNIPROTKB|H3BU04	294	TIPIN "TIMELESS-interacting pr	0.758	0.578	0.380	1.2e-26
UNIPROTKB|Q9BVW5	301	TIPIN "TIMELESS-interacting pr	0.758	0.564	0.380	1.2e-26
MGI|MGI:1921571	278	Tipin "timeless interacting pr	0.754	0.607	0.395	2.5e-26
UNIPROTKB|Q3ZCC4	290	TIPIN "TIMELESS-interacting pr	0.758	0.586	0.386	4e-26
RGD|2323509	276	Tipinl1 "TIMELESS interacting	0.741	0.601	0.375	5.2e-26
ZFIN|ZDB-GENE-040801-189	296	tipin "timeless interacting pr	0.718	0.543	0.380	5.2e-26
UNIPROTKB|E2RR93	286	TIPIN "Uncharacterized protein	0.75	0.587	0.387	6.6e-26
RGD|1561480	276	Tipin-ps1 "timeless interactin	0.741	0.601	0.369	1.1e-25

FB|FBgn0032698 CG10336 [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 65/175 (37%), Positives = 97/175 (55%)

Query:     2 LDDIFLDELVDDPEPMLNEDHHPEARXXXXXXXXXXXXXXXXXXXAVRVAPKKKVIRNPQ 61
             +DD+F D +  DP+  L  D   E                     A  V PKK+ +RNP+
Sbjct:    10 VDDLFNDNIPTDPD-QLPSDGEGEK----LFADDEDNGVEPGSQDAQIVEPKKRAVRNPR 64

Query:    62 PKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVL 121
             P+L  + L GPRGIQ IE YFKD+KFKGKG+E  DL+ ++  L+HW +R+YP   F DVL
Sbjct:    65 PRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVL 124

Query:   122 KRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQPTSDDIFND 176
               +E LG K+P+  H+ + RLG +E++       L + +   + Q+   D+ F++
Sbjct:   125 NNIERLGKKKPLQVHMARYRLGQLEQMRAHEAEALEEAQD--EQQEGAGDEPFDE 177

GO:0003674 "molecular_function" evidence=ND

GO:0048478 "replication fork protection" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|Q0IHI4 tipin "TIMELESS-interacting protein" [Xenopus laevis (taxid:8355)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 72/175 (41%), Positives = 108/175 (61%)

Query:    52 PKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRL 111
             P ++V++ PQPKL+ QRL   RG+  +   F DVKFKGKGHE  DL  ++  +E+WA+RL
Sbjct:    62 PARRVVKRPQPKLDGQRLASQRGLPALRHMFDDVKFKGKGHETEDLKILLRQMENWAHRL 121

Query:   112 YPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQD--SNLVLSDTETPAQPQQPT 169
             +PK  F D L RLE +G+K+ V T +KKIR+ +   ++ D  S  V+  TE  A    P+
Sbjct:   122 FPKLQFEDFLNRLESMGNKKEVQTCLKKIRMDL-PIVHDDFLSEEVVVQTEDHAI-DMPS 179

Query:   170 SDDIFNDLL-ASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQK 223
              D  F D L    PSQ   PV  +++E   +R+ RNR++A E+R+ ++  +AE +
Sbjct:   180 EDFSFPDELHVPSPSQ---PVKVDLSEETLQRIERNRRLALERRMEKMQAQAESQ 231

GO:0000076 "DNA replication checkpoint" evidence=ISS

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0031573 "intra-S DNA damage checkpoint" evidence=ISS

GO:0033261 "regulation of S phase" evidence=ISS

UNIPROTKB|H3BU04 TIPIN "TIMELESS-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 67/176 (38%), Positives = 104/176 (59%)

Query:    48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
             VRV PK+ V RN  PKL+AQRL   RG+  +   F   KFKGKGHE  DL  ++ ++EHW
Sbjct:    52 VRVPPKRTVKRNI-PKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHW 110

Query:   108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQ 167
             A+RL+PK  F D + R+E LG K+ V T +K+IRL +   L++D   V ++ E     + 
Sbjct:   111 AHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL-PILHED--FVSNNDEVAENNEH 167

Query:   168 PTSDDIFNDLLA--SQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
               +    +  L   S+     + + + +TE Q++R+ RN+Q+A E+R A+L   ++
Sbjct:   168 DVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQ 223

GO:0005634 "nucleus" evidence=IEA

GO:0048478 "replication fork protection" evidence=IEA

GO:0000077 "DNA damage checkpoint" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

UNIPROTKB|Q9BVW5 TIPIN "TIMELESS-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 67/176 (38%), Positives = 104/176 (59%)

Query:    48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
             VRV PK+ V RN  PKL+AQRL   RG+  +   F   KFKGKGHE  DL  ++ ++EHW
Sbjct:    52 VRVPPKRTVKRNI-PKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHW 110

Query:   108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQ 167
             A+RL+PK  F D + R+E LG K+ V T +K+IRL +   L++D   V ++ E     + 
Sbjct:   111 AHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL-PILHED--FVSNNDEVAENNEH 167

Query:   168 PTSDDIFNDLLA--SQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
               +    +  L   S+     + + + +TE Q++R+ RN+Q+A E+R A+L   ++
Sbjct:   168 DVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQ 223

GO:0048478 "replication fork protection" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000076 "DNA replication checkpoint" evidence=IMP

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0031573 "intra-S DNA damage checkpoint" evidence=IMP

GO:0033261 "regulation of S phase" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0033262 "regulation of DNA replication involved in S phase" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1921571 Tipin "timeless interacting protein" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 70/177 (39%), Positives = 106/177 (59%)

Query:    48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
             V V PK+ V RN  PKL+A RLT  RG+  +   F   KFKGKGHE  DL T++ ++EHW
Sbjct:    49 VPVPPKRTVKRN-LPKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKTLIRHMEHW 107

Query:   108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM--IEELNQDSNLVLSDTETPAQP 165
             A+RL+PK  F D + R+E LG+K+ V T +K+IRL +  + E   ++N  + +   P   
Sbjct:   108 AHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEVGEANGP--D 165

Query:   166 QQPTSDDIFNDLLASQPSQHI-TPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
                T  D F  L +S  S+   +   + +TE Q++R+ RN+Q+A E+R A+L   ++
Sbjct:   166 VSATGFDPF--LTSSSDSRKFASEPTRSLTEEQQQRIERNKQLALERRQAKLLSNSQ 220

GO:0000076 "DNA replication checkpoint" evidence=ISO

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009411 "response to UV" evidence=IMP

GO:0031573 "intra-S DNA damage checkpoint" evidence=ISO

GO:0033261 "regulation of S phase" evidence=ISO

GO:0048478 "replication fork protection" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q3ZCC4 TIPIN "TIMELESS-interacting protein" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 68/176 (38%), Positives = 108/176 (61%)

Query:    48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
             V V PK+ V RN  PKLNA+RL   RG+  +   F+  KFKGKGHE  DL T++ ++EHW
Sbjct:    52 VPVPPKRTVKRNI-PKLNAERLISERGLPALRHVFEKAKFKGKGHEAEDLKTLIRHMEHW 110

Query:   108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQP-Q 166
             A+RL+PK  F D + R+E LG+K+ V T +K+IRL +   L++D   V ++ E       
Sbjct:   111 AHRLFPKLQFEDFIDRVECLGNKKEVQTCLKRIRLDL-PILHED--FVSNNDEVEENNGH 167

Query:   167 QPTSDDIFNDLLASQPS-QHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
               T+ ++ + L  S  S +  +   + +TE +++R+ RN+Q+A E+R A+L   ++
Sbjct:   168 DVTATELDHFLTNSYGSVEFASESSRSLTEEEQQRIERNKQLALERRQAKLLSNSQ 223

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0000076 "DNA replication checkpoint" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0033261 "regulation of S phase" evidence=ISS

GO:0031573 "intra-S DNA damage checkpoint" evidence=ISS

GO:0009411 "response to UV" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0048478 "replication fork protection" evidence=IEA

RGD|2323509 Tipinl1 "TIMELESS interacting protein like 1" [Rattus norvegicus (taxid:10116)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 65/173 (37%), Positives = 105/173 (60%)

Query:    52 PKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRL 111
             P K++++   PKL+A RLT  RG+  +   F   KFKGKGHE  DL T++ ++EHWA+RL
Sbjct:    52 PPKRIVKRNIPKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRL 111

Query:   112 YPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM--IEELNQDSNLVLSDTETPAQPQQPT 169
             +PK  F D + R+E LG+K+ V T +K+IRL +  + E   ++N  +   ET +     T
Sbjct:   112 FPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEVE--ETNSLDAAAT 169

Query:   170 SDDIFNDLLASQPSQHI-TPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
               D F  + +S  S+   +   + +TE Q++R+ RN+Q+A E+R A+L   ++
Sbjct:   170 GFDAF--VTSSSDSKRFASEASRNLTEEQQQRIERNKQLALERRQAKLLSNSQ 220

GO:0000076 "DNA replication checkpoint" evidence=ISO

GO:0000077 "DNA damage checkpoint" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009411 "response to UV" evidence=ISO

GO:0031573 "intra-S DNA damage checkpoint" evidence=ISO

GO:0033261 "regulation of S phase" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048478 "replication fork protection" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040801-189 tipin "timeless interacting protein" [Danio rerio (taxid:7955)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 64/168 (38%), Positives = 103/168 (61%)

Query:    48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
             V VA K++ ++ P+PKL+A RL   +G+  +   F+DVKFKGKGHE  +L  +M  +E+W
Sbjct:    59 VPVA-KRRTVKRPRPKLDANRLISEKGLPALRTLFEDVKFKGKGHETENLKLLMLKMENW 117

Query:   108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQPQQ 167
             A+RLYPK  F + + ++E LG K+ V T +K+IRL M    ++D     ++ + P +   
Sbjct:   118 AHRLYPKMQFEEFIDKVENLGGKKEVQTCLKRIRLDM-PITHEDYVAEEAEIQVPEE-SV 175

Query:   168 PTSDDIFNDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLAR 215
             P+ D  F +     P  H TP    +TE Q++R+  N+++A E+RLA+
Sbjct:   176 PSGDGGFPE----DPFIHSTPAPASLTEEQQQRIELNKRLALERRLAK 219

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0048478 "replication fork protection" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0000076 "DNA replication checkpoint" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0033261 "regulation of S phase" evidence=ISS

GO:0031573 "intra-S DNA damage checkpoint" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|E2RR93 TIPIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 69/178 (38%), Positives = 108/178 (60%)

Query:    48 VRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHW 107
             V V PK+ V RN  PKL+AQRL   RG+  +   F + KFKGKGHE  DL T++ ++EHW
Sbjct:    52 VPVPPKRTVKRNI-PKLDAQRLISERGLPALRHVFDNAKFKGKGHEAEDLKTLIRHMEHW 110

Query:   108 ANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTETPAQ--- 164
             A+RL+PK  F D + R+E LG K+ V T +K+IRL +   +++D   + +D E       
Sbjct:   111 AHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL-PIIHED--FISNDGEAGENHGY 167

Query:   165 PQQPTSDDIF-NDLLASQPSQHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
              +  T  D F  +L+ S+    ++   + +TE Q++R+ RN+Q+A E+R A+L   ++
Sbjct:   168 DKTATELDPFLTNLVESE--NFVSEPNRSLTEEQQQRIERNKQLALERRQAKLLSNSQ 223

GO:0033261 "regulation of S phase" evidence=IEA

GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000076 "DNA replication checkpoint" evidence=IEA

GO:0048478 "replication fork protection" evidence=IEA

RGD|1561480 Tipin-ps1 "timeless interacting protein, pseudogene 1" [Rattus norvegicus (taxid:10116)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 64/173 (36%), Positives = 105/173 (60%)

Query:    52 PKKKVIRNPQPKLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRL 111
             P K++++   PKL+A RLT  RG+  +   F   KFKGKGHE  DL T++ ++EHWA+RL
Sbjct:    52 PPKRIVKRNIPKLDATRLTSERGLPALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRL 111

Query:   112 YPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGM--IEELNQDSNLVLSDTETPAQPQQPT 169
             +PK  F D + R+E LG+K+ V T +K+IRL +  + E   ++N  +   ET +     T
Sbjct:   112 FPKLQFEDFIDRVENLGNKKEVQTCLKRIRLDLPIVHEDFVNNNDEVE--ETNSLDAAAT 169

Query:   170 SDDIFNDLLASQPSQHI-TPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE 221
               D F  + +S  S+   +   + +TE Q++R+ +N+Q+A E+R A+L   ++
Sbjct:   170 GFDAF--VTSSSDSKRFASEASRNLTEEQQQRIEKNKQLALERRQAKLLSNSQ 220

GO:0000076 "DNA replication checkpoint" evidence=ISS

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0031573 "intra-S DNA damage checkpoint" evidence=ISS

GO:0033261 "regulation of S phase" evidence=ISS

GO:0048478 "replication fork protection" evidence=IEA

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5F416	TIPIN_CHICK	No assigned EC number	0.3298	0.7767	0.6148	yes	N/A
Q4QR88	TIPIN_RAT	No assigned EC number	0.3977	0.7633	0.6195	yes	N/A
Q91WA1	TIPIN_MOUSE	No assigned EC number	0.3922	0.7633	0.6151	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
pfam07962	84	pfam07962, Swi3, Replication Fork Protection Compo	4e-30

>gnl|CDD|219667 pfam07962, Swi3, Replication Fork Protection Component Swi3

 Score =  106 bits (267), Expect = 4e-30
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query: 63  KLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLK 122
           KL+ +RL  P+GI  + + FKD KFKGKGHE +DL  ++   + WA+ L+PK+ F D L 
Sbjct: 1   KLDEERLLSPKGIPALRKTFKDFKFKGKGHEYSDLARLLQFYQLWAHDLFPKAKFKDFLN 60

Query: 123 RLEVLGHKRPVMTHIKKIRLGMIE 146
            +E LGHK+ V T+ +++RL    
Sbjct: 61  LVEKLGHKKQVQTYRRELRLEEKG 84

Replication fork pausing is required to initiate a recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1 Swi3, together with Swi1, define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks. The Swi1-Swi3 complex is required for accurate replication, fork protection and replication checkpoint signalling. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG3004|consensus	305		100.0
PF07962	83	Swi3: Replication Fork Protection Component Swi3;	100.0
PF00446	10	GnRH: Gonadotropin-releasing hormone; InterPro: IP	81.94
KOG3004|consensus	305		80.07

>KOG3004|consensus

Probab=100.00  E-value=1.1e-40  Score=301.64  Aligned_cols=205  Identities=28%  Similarity=0.456  Sum_probs=169.3

Q ss_pred             hhcc-ccCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCcccccCCcccccCCCCccccccccCCCChHHHHHhc
Q psy3792           4 DIFL-DELVDDPEPMLNEDHHPEARESQDEDEQPPPNPSEPSEDAVRVAPKKKVIRNPQPKLNAQRLTGPRGIQCIEQYF   82 (224)
Q Consensus         4 ~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~v~pkkk~vRrp~pKLd~erLlsp~GLp~L~k~f   82 (224)
                      |+|. |..+..|.|++.++     ++  ++.++...   ...+.+..++++||++|+++++|++.+|||++|||+|+++|
T Consensus        14 d~~~~~~~~~~p~~~~~~~-----~e--~~~~~~v~---~~~~~~k~l~~rKR~~~~~~~~lsa~~L~s~~Gip~lR~~~   83 (305)
T KOG3004|consen   14 DSFENDPGQTVPDPSGPEA-----KE--GVKTEGVE---PDGGDPKDLRGRKRAVRVKSPKLSAETLISEKGIPALRDCF   83 (305)
T ss_pred             hhcccCCCCCCCCCCCccc-----cc--ccCCCCCC---cCCCCccccccccccccccccccchhhhcCccCchHHHHHH
Confidence            4555 88999999999999     55  33332221   22345667779999999999999999999999999999999


Q ss_pred             ccccccCCCChhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCchHHHHHHHHHhhhhhhhcccccccccCCCC-
Q psy3792          83 KDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRLGMIEELNQDSNLVLSDTET-  161 (224)
Q Consensus        83 k~~kfKGKGhE~~DL~~LL~~Yq~WaH~LyPK~~F~Dfi~rvEkLG~kk~Vq~~Lk~~R~~l~~~~~~~ed~~~~d~~~-  161 (224)
                      +++||+||||||.||..||++|+||+|+||||++|+|||.+|++||+++.||++|.+||+++...   ++.+.+..... 
T Consensus        84 k~~k~kgKg~e~~dL~~llr~y~~WgH~lfPk~kf~D~i~~~etLGk~r~vkv~~~r~rLg~~~~---~~~h~~~~~~~s  160 (305)
T KOG3004|consen   84 KKAKFKGKGHEYIDLKELLRSYQHWGHELFPKAKFDDFINRVETLGKKREVKVDLLRYRLGYFPE---NEEHEHLLLEYS  160 (305)
T ss_pred             hhcCcCCCCCcccCHHHHHHHHHHHHHhhcccchhHHHHHHHHhhccccchhhhhhHHHhccCcc---chhhhhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999988   66655544332 


Q ss_pred             CCCCCCCCCCchhhhhhccC-CC-CCCCCCchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy3792         162 PAQPQQPTSDDIFNDLLASQ-PS-QHITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAE  221 (224)
Q Consensus       162 ~~~~~~~~~~d~~d~~~~~~-~~-~~~s~~~~~LteEQ~~Rie~Nr~~AlErR~ar~~~~~~  221 (224)
                      +...++.+.+.++|+|+..- .. .....+..+..+.++-++++|.|.|.|||.+.....|+
T Consensus       161 ~~~~q~~as~~~~D~f~~dl~E~~a~~~d~~~~~e~~~~~t~~~~~q~~de~~~~e~~~~s~  222 (305)
T KOG3004|consen  161 PDHVQHVASDEEVDPFIQDLRERVAVGVDPNKSYEKQEQSTAESDDQVADERRHDEENINSK  222 (305)
T ss_pred             chhhhhccccccccHHHHhhHhhhhhccCCCccHHHHHHhhcccccccccccccchhhcccc
Confidence            33256777777788887654 11 12256677788888999999999999999998877765

>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events

Probab=100.00  E-value=1.1e-36  Score=230.92  Aligned_cols=83  Identities=40%  Similarity=0.751  Sum_probs=81.2

Q ss_pred             ccccccccCCCChHHHHHhcccccccCCCChhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCCchHHHHHHHHHh
Q psy3792          63 KLNAQRLTGPRGIQCIEQYFKDVKFKGKGHELADLNTIMSNLEHWANRLYPKSNFVDVLKRLEVLGHKRPVMTHIKKIRL  142 (224)
Q Consensus        63 KLd~erLlsp~GLp~L~k~fk~~kfKGKGhE~~DL~~LL~~Yq~WaH~LyPK~~F~Dfi~rvEkLG~kk~Vq~~Lk~~R~  142 (224)
                      |||++||+||+|||+|+++|++++|+|||||++||.+||++||+|||+||||++|+|||.+||+||++++||+|+++||.
T Consensus         1 KLd~~rL~~~~Glp~l~~~~k~~k~kgkghE~~dL~~ll~~Yq~W~h~LfPk~~F~d~i~~vE~LG~~k~v~~~~~~lr~   80 (83)
T PF07962_consen    1 KLDEERLLSPKGLPYLRKNFKKFKFKGKGHEYEDLRRLLQFYQLWAHRLFPKASFEDFIERVEKLGKKKRVRNYRRELRE   80 (83)
T ss_pred             CCCHHHccCCCCHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhh
Q psy3792         143 GMI  145 (224)
Q Consensus       143 ~l~  145 (224)
                      +++
T Consensus        81 ~~~   83 (83)
T PF07962_consen   81 EEK   83 (83)
T ss_pred             hcC
Confidence            763

More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus

>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction

Probab=81.94  E-value=0.3  Score=24.26  Aligned_cols=10  Identities=30%  Similarity=0.896  Sum_probs=8.6

Q ss_pred             HHHHhhcCCC
Q psy3792         105 EHWANRLYPK  114 (224)
Q Consensus       105 q~WaH~LyPK  114 (224)
                      |||.|.++|.
T Consensus         1 QHwS~~w~PG   10 (10)
T PF00446_consen    1 QHWSHGWKPG   10 (10)
T ss_pred             CccccccCCC
Confidence            6999999983

The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region

>KOG3004|consensus

Probab=80.07  E-value=1.9  Score=40.44  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=33.1

Q ss_pred             CCCCCchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy3792         185 HITPVVKEITEAQRERMLRNRQIAEEKRLARLAMEAEQK  223 (224)
Q Consensus       185 ~~s~~~~~LteEQ~~Rie~Nr~~AlErR~ar~~~~~~~~  223 (224)
                      +..++...|.+||+.+|+.|++.+++|-.|.+.+.+..|
T Consensus       266 ~~~~~ik~len~q~~~ieq~~r~~~~rl~a~qr~~~~~k  304 (305)
T KOG3004|consen  266 PEANAIKALENEQMISIEQRVRMEQNRLKALQRAKARLK  304 (305)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhHhhhhhhHHHHhhcC
Confidence            346667889999999999999999999999988887655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00