Psyllid ID: psy4094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660---
Protein Sequence
MEDILTPPDTPENTKSSRKSVKYSTLPGASSLAVISNEKTNLKFGSVFSLSSQSDQSEKSPRKTSISSPEEKQKRRRFSFLSDKTEKLARKLSISSEKLDKKSAKQSTEKVNEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEESSEDTMDGKNGGKSKKKGGKTKFKKIVPVEPSALASPNTIPDTPPTPQNSKVFLEKEREVKEREGEQQEGGSVTSSPSITPTPPTQSDTSLLSTPAQSQDLDSATDNDETYDTPMGTSPNSSVMNQAPGDSDQDLDVTLKENTELPSAAAAASDVKSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccccEEEEEEccccccccccEEEEccccccccccccccccccHHHHHHccccEEEEcHHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHcccccEEEccccccccccccccccccHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEEEHHcccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccccccccEEEEcccEEEEEEEEEcccccccccccHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEcccccccEEEEEEcccccccEcEEEEEccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHccccHHHcHHHcccccccccccccccccHHHHcccccEEEEEccccccccccccccHHHHHHHHccccccccccccccccccHHHHcccccEEEEEccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcccccHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHccccccHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEcccEEEEEEEEEEcccHHHcccccHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHccccccccccEEEEEEccccccccccccHHHHHHHHHHcccccEEEEEccccEcHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
mediltppdtpentkssrksvkystlpgasslavisnektnlkfgsvfslssqsdqseksprktsisspeekqKRRRFSFLSDKTEKLARKLSISSEKLDKKSAKQSTekvnekpvkkssIEQVnergvdvefstsaplesttskksplkfKLLKKlsfskkpktkekpvkksSIEQVnergvdvefstsaplesttskksplkfKLLKKLsfskkpktkeessedtmdgknggkskkkggktkfkkivpvepsalaspntipdtpptpqnskVFLEKEREVKEregeqqeggsvtsspsitptpptqsdtsllstpaqsqdldsatdndetydtpmgtspnssvmnqapgdsdqdldvtlkentelpsaaaaasdvkspsdlkKEILSITTPIvteagrkkhnepkpftspnsssngeketaaspntsvvagktsitngsskevspyskmpdkrEFLYKILVIGELGAGKTSIIKRYVhqffsphyratigvDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDldakvtlpdgnpipcvllankcdqpkegiannpaKIDEFIkehnfsgwfetsakdninIDDAAKTLVQKILENdkvqangdshaTSEAVFSLNrnsqetkngrncac
Flexible Loop (DISEMBL)
mediltppdtpentkssrksvkystlpgasslaviSNEKTNLKFGSVFslssqsdqseksprktsisspeekqkrrrfsflsdkteklarklsissekldkksakqstekvnekpvkkssieqvnergvdvefstsaplesttskksplkfkllkklsfskkpktkekpvkkssieqvnergvdvefstsaplesttskksplkfkllkklsfskkpktkeessedtmdgknggkskkkggktkfkkivpvepsalaspntipdtpptpqNSKVFLEKEREVKeregeqqeggsvtsspsitptPPTQSDTSLLSTPAQSQDLDSATDNDETYDTPmgtspnssvmnqaPGDSDQDLDVTLKENTELPsaaaaasdvkspsdlkkeilsittpivteagrkkhnepkpftspnsssngeketaaspntsvvagktsitngsskevspyskmpdkREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAvfslnrnsqetkngrncac
Low Complexity Region (SEG)
MEDILTPPDTPENTKSSRKSVKYSTLPGASSLAVISNEKTNLKFGsvfslssqsdqseksPRKTSISSPEEKQKRRRFSFLSDKTEKLARKLSISSEKLDKKSAKQSTEKVNEKPVKKSSIEQVNERGVDVEFSTSAPLEsttskksplkfkllkklsfskkpktkekpvkkssIEQVNERGVDVEFSTSAPLEsttskksplkfkllkklsfskkpktkeesseDTMDgknggkskkkggktkfkkIVPVEPSALASPNTIPDTPPTPQNSKVFLekerevkeregeqqegGSVtsspsitptpptqsdtsllstpAQSQDLDSATDNDETYDTPMGTSPNSSVMNQAPGDSDQDLDVTLKENTELPSAAAAASDVKSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL************************************
Disordered Region (DISOPRED)
****LTP******************LPGASSLAVISNEKTNLKFGS***********************************SDKTEK****************************************************************************************************************************************************************IVPVEPSAL********************************************************************************************************************************************************************************************************FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG*********EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI*******************************GRNCAC
Disordered Region (DISEMBL)
***********************STLPGASSLAVISNEKTNLKFGSVF****************************RFSFLSDKTEKLARKLSISS**************************QVNERGVDVEFST***********SPLKFKLLKKLSFSK***************QVNERGVDVEFST***********SPLKFKLLKKLSFS*****************************KFKKIVPVEPSALASPNTIPDTPPTPQNSKVFLEKE**************************************************DETYDTPMGTSPNSSVMNQAPGDSDQDLDVTLKENTEL**************DLKKEILSITTPIVTEAGR***************************TSVVAGKTSITN**********KMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNR*************
Disordered Region (DISPRO)
*****T***********RKSVKYSTLPGASSLAVISNEKTNLKFGSVFSL****************************SFLSDKTEKLARKLSIS****D******************SSI*****RGVDVEFSTSAPLE***SKKSPLKFKLLKKLSFSK*********KKSSI****ERGVDVEFSTSAPL*****KKSPLKFKLLKKLSF*****************************TKFKKIVPVEPSALAS**************************************************************************************************LDVTLKENTELPSAAAAASDVKSPSDLKKEILSITTPIVTE******************************************************PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV*******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDILTPPDTPENTKSSRKSVKYSTLPGASSLAVISNEKTNLKFGSVFSLSSQSDQSEKSPRKTSISSPEEKQKRRRFSFLSDKTEKLARKLSISSEKLDKKSAKQSTEKVNEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEESSEDTMDGKNGGKSKKKGGKTKFKKIVPVEPSALASPNTIPDTPPTPQNSKVFLEKEREVKEREGEQQEGGSVTSSPSITPTPPTQSDTSLLSTPAQSQDLDSATDNDETYDTPMGTSPNSSVMNQAPGDSDQDLDVTLKENTELPSAAAAASDVKSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	663	2.2.26 [Sep-21-2011]
Q13637	225	Ras-related protein Rab-3	yes	N/A	0.265	0.782	0.745	2e-80
Q9CZE3	223	Ras-related protein Rab-3	yes	N/A	0.288	0.856	0.682	6e-80
Q06AU5	226	Ras-related protein Rab-3	yes	N/A	0.269	0.792	0.733	8e-80
Q8QZZ8	211	Ras-related protein Rab-3	no	N/A	0.265	0.834	0.744	2e-75
P57729	211	Ras-related protein Rab-3	no	N/A	0.265	0.834	0.738	4e-75
Q54QR3	219	Ras-related protein Rab-3	yes	N/A	0.309	0.936	0.596	4e-66
Q5R7A4	203	Ras-related protein Rab-7	no	N/A	0.260	0.852	0.542	9e-57
O14966	203	Ras-related protein Rab-7	no	N/A	0.260	0.852	0.542	9e-57
Q63481	204	Ras-related protein Rab-7	no	N/A	0.263	0.857	0.531	4e-55
Q91YQ1	204	Ras-related protein Rab-7	no	N/A	0.263	0.857	0.531	4e-55

>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3

 Score =  300 bits (768), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 132/177 (74%), Positives = 159/177 (89%), Gaps = 1/177 (0%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD  T++RLQLWD
Sbjct: 22  REHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWD 81

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERFGNMTRVYYKEAVGAF+VFD++R++TF+AVLKWK DLD+KV LP+G+PIP VLL
Sbjct: 82  IAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLL 141

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           ANKCDQ K+  + +P+++D+F KEH F+GWFETSAKDNINI++AA+ LV+KIL N +
Sbjct: 142 ANKCDQNKDS-SQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQ 197

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.
Homo sapiens (taxid: 9606)

>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3

 Score =  299 bits (765), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 164/192 (85%), Gaps = 1/192 (0%)

Query: 440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
           G  ++ +  +  P+ RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKV
Sbjct: 5   GLGQQGASATAAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKV 64

Query: 500 LSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA 559
           L+WD  T++RLQLWDIAGQERFGNMTRVYYKEA+GAF+VFD++R++TFDAVLKWK DLD+
Sbjct: 65  LNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDS 124

Query: 560 KVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
           KV LP+G+PIP VLLANKCDQ K+  + +P+++D+F K+H F+GWFETSAKDNINID+A 
Sbjct: 125 KVHLPNGSPIPAVLLANKCDQKKDN-SQSPSQMDQFCKDHGFTGWFETSAKDNINIDEAT 183

Query: 620 KTLVQKILENDK 631
           + LV+ +L N +
Sbjct: 184 RFLVENMLANQQ 195

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Mus musculus (taxid: 10090)

>sp|Q06AU5|RAB32_PIG Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1

 Score =  298 bits (763), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 132/180 (73%), Positives = 156/180 (86%), Gaps = 1/180 (0%)

Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           P+ RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD  T++RLQ
Sbjct: 21  PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQ 80

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           LWDIAGQERFGNMTRVYYKEAVGA +VFD++R + F+AVLKWK DLD+KV LP+G+PIP 
Sbjct: 81  LWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPA 140

Query: 572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           VLLANKCDQ K+    NP+++D+F KEH F+GWFETSAKDNINID+AA+ LV+ IL N +
Sbjct: 141 VLLANKCDQKKDS-GQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQ 199

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Sus scrofa (taxid: 9823)

>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1

 Score =  284 bits (726), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/176 (74%), Positives = 153/176 (86%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           +E LYK+LVIG+LG GKTSIIKRYVHQ FS HYRATIGVDFALKVL WD ET++RLQLWD
Sbjct: 6   KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERFGNMTRVYY+EA+GAFIVFDVTR ATF+AV KWK DLD+K+TLP+G P+  VLL
Sbjct: 66  IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLL 125

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
           ANKCDQ K+ + NN  K+D+F KEH F GWFETSAK+NINID+A++ LV+ IL N+
Sbjct: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANE 181

May be involved in melanosomal transport and docking. Involved in the proper sorting of TYRP1.

Mus musculus (taxid: 10090)

>sp|P57729|RAB38_HUMAN Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1

 Score =  283 bits (723), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 130/176 (73%), Positives = 153/176 (86%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           +E LYK+LVIG+LG GKTSIIKRYVHQ FS HYRATIGVDFALKVL WD ET++RLQLWD
Sbjct: 6   KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERFGNMTRVYY+EA+GAFIVFDVTR ATF+AV KWK DLD+K++LP+G P+  VLL
Sbjct: 66  IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
           ANKCDQ K+ + NN  K+D+F KEH F GWFETSAK+NINID+A++ LV+ IL N+
Sbjct: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANE 181

May be involved in melanosomal transport and docking. Involved in the proper sorting of TYRP1.

Homo sapiens (taxid: 9606)

>sp|Q54QR3|RB32A_DICDI Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1

 Score =  253 bits (645), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 155/208 (74%), Gaps = 3/208 (1%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           E+LYKILV+G++G GKTSIIKR+VH  FS HY++TIGVDFALKV++WD +T +RLQLWDI
Sbjct: 13  EYLYKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDI 72

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTL-PDGNPIPCVLL 574
           AGQERFG+MTRVYYKEAVGA I FDVTR +TF+AV KWK D+D+KVT   D  PIP VLL
Sbjct: 73  AGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLL 132

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634
           ANKCD  K+        +D++ K++ F GWFETSAK+N+NI+ AA+ LV  IL+ND V+ 
Sbjct: 133 ANKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKND-VRR 191

Query: 635 NGDSHATSEAVFSLNRNSQETKNGRNCA 662
           N     T +    LN+  Q T  G +C 
Sbjct: 192 NQPIEGTIQPG-DLNKQPQPTSTGPSCC 218

Dictyostelium discoideum (taxid: 44689)

>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1

 Score =  222 bits (565), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 132/175 (75%), Gaps = 2/175 (1%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R+ L+K+LV+G+   GKTS+++RY    FS HY++T+GVDFALKVL W    I+RLQLWD
Sbjct: 4   RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWD 63

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERF +MTR+YY++A    I+FDVT A TF    +WKQDLD+K+TLP+G P+PC+LL
Sbjct: 64  IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLL 123

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           ANKCD     ++ +  +ID F KE+ F+GW ETS K+N NI++A + L++K++ N
Sbjct: 124 ANKCDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRN 176

Pongo abelii (taxid: 9601)

>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1

 Score =  222 bits (565), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 132/175 (75%), Gaps = 2/175 (1%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R+ L+K+LV+G+   GKTS+++RY    FS HY++T+GVDFALKVL W    I+RLQLWD
Sbjct: 4   RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWD 63

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERF +MTR+YY++A    I+FDVT A TF    +WKQDLD+K+TLP+G P+PC+LL
Sbjct: 64  IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLL 123

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           ANKCD     ++ +  +ID F KE+ F+GW ETS K+N NI++A + L++K++ N
Sbjct: 124 ANKCDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRN 176

Homo sapiens (taxid: 9606)

>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1

 Score =  216 bits (551), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 131/177 (74%), Gaps = 2/177 (1%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R+ L+K+LV+G+   GKTS+++RY    FS HY++T+GVDFALKVL W    ++RLQLWD
Sbjct: 4   RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWD 63

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERF +MTR+YY++A    I+FDVT A TF    +WKQDLD+K+TLP G P+PC+LL
Sbjct: 64  IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLL 123

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           ANK D     ++ +  +ID F KE+ F+GW ETS K+N NI++A + LV+K++ N +
Sbjct: 124 ANKSDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178

Rattus norvegicus (taxid: 10116)

>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1

 Score =  216 bits (551), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 131/177 (74%), Gaps = 2/177 (1%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R+ L+K+LV+G+   GKTS+++RY    FS HY++T+GVDFALKVL W    ++RLQLWD
Sbjct: 4   RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWD 63

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           IAGQERF +MTR+YY++A    I+FDVT A TF    +WKQDLD+K+TLP G P+PC+LL
Sbjct: 64  IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLL 123

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           ANK D     ++ +  +ID F KE+ F+GW ETS K+N NI++A + LV+K++ N +
Sbjct: 124 ANKSDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	663
328778015	637	PREDICTED: hypothetical protein LOC72688	0.333	0.346	0.727	2e-96
340726280	678	PREDICTED: hypothetical protein LOC10064	0.333	0.325	0.723	2e-95
350405324	678	PREDICTED: hypothetical protein LOC10075	0.333	0.325	0.723	3e-95
307182735	658	Ras-related protein Rab-32 [Camponotus f	0.366	0.369	0.681	4e-95
383866195	665	PREDICTED: uncharacterized protein LOC10	0.316	0.315	0.753	4e-94
307202148	657	Ras-related protein Rab-32 [Harpegnathos	0.315	0.318	0.754	4e-94
157114529	294	rab32 [Aedes aegypti] gi|157114533|ref|X	0.431	0.972	0.573	1e-92
332027672	287	Ras-related protein Rab-32 [Acromyrmex e	0.315	0.728	0.759	1e-91
357608836	629	Rab-related protein [Danaus plexippus]	0.337	0.356	0.682	1e-90
157114531	232	rab32 [Aedes aegypti] gi|403182835|gb|EJ	0.331	0.948	0.713	1e-89

>gi|328778015|ref|XP_001122603.2| PREDICTED: hypothetical protein LOC726887 [Apis mellifera]

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 163/224 (72%), Positives = 192/224 (85%), Gaps = 3/224 (1%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           SS+  SP + + +KRE LYKILVIGELGAGKTSIIKRYVHQFFS HYRATIGVDFALKVL
Sbjct: 416 SSQNNSPNAGLGEKREHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVL 475

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           +WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR+AT DAV+KWKQDLD+K
Sbjct: 476 NWDPHTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSK 535

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
           V LPDG+PIPCVLLANKCDQ KEG+ N+PAK+DE+ KE NF+GWFETSAK+NINI++AA+
Sbjct: 536 VQLPDGSPIPCVLLANKCDQQKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAAR 595

Query: 621 TLVQKILENDKV-QANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
            LV KIL+ND++ + NG    T    F+LN++   +K  ++C+C
Sbjct: 596 FLVNKILQNDQLMKGNGSQDQTDGERFALNQSPNSSK--KSCSC 637

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726280|ref|XP_003401488.1| PREDICTED: hypothetical protein LOC100644037 [Bombus terrestris]

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/224 (72%), Positives = 190/224 (84%), Gaps = 3/224 (1%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           SS+  +P + + DKRE LYKILVIGELGAGKTSIIKRYVHQFFS HYRATIGVDFALKVL
Sbjct: 457 SSQNNAPNAGLGDKREHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVL 516

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           +WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR+AT DAV+KWKQDLD+K
Sbjct: 517 NWDPHTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSK 576

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
           V LPDG+ IPCVLLANKCDQ KEG+ N+PAK+DE+ KE NF+GWFETSAK+NINI++AA+
Sbjct: 577 VQLPDGSQIPCVLLANKCDQQKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAAR 636

Query: 621 TLVQKILENDK-VQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
            LV KIL+ND+ ++ NG    T    F+LN+    +K  ++C+C
Sbjct: 637 FLVNKILQNDQMMKGNGSQDQTDGERFALNQTPTSSK--KSCSC 678

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405324|ref|XP_003487400.1| PREDICTED: hypothetical protein LOC100750072 [Bombus impatiens]

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 162/224 (72%), Positives = 190/224 (84%), Gaps = 3/224 (1%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           SS+  +P + + DKRE LYKILVIGELGAGKTSIIKRYVHQFFS HYRATIGVDFALKVL
Sbjct: 457 SSQNNAPNAGLGDKREHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVL 516

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           +WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR+AT DAV+KWKQDLD+K
Sbjct: 517 NWDPHTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSK 576

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
           V LPDG+ IPCVLLANKCDQ KEG+ N+PAK+DE+ KE NF+GWFETSAK+NINI++AA+
Sbjct: 577 VQLPDGSQIPCVLLANKCDQQKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAAR 636

Query: 621 TLVQKILENDK-VQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
            LV KIL+ND+ ++ NG    T    F+LN+    +K  ++C+C
Sbjct: 637 FLVNKILQNDQMMKGNGSQDQTDGERFALNQTPTSSK--KSCSC 678

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182735|gb|EFN69859.1| Ras-related protein Rab-32 [Camponotus floridanus]

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/254 (68%), Positives = 201/254 (79%), Gaps = 11/254 (4%)

Query: 411 SPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAG 470
           S N+  N  K  AA      VA ++S +N S+  V       +KRE LYKILVIGELGAG
Sbjct: 415 SYNNMDNLSKSHAAM--VGAVADQSSSSNASNLGVD------EKREHLYKILVIGELGAG 466

Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
           KTSIIKRYVHQFFS HYRATIGVDFALKVL+WD  TIIRLQLWDIAGQERFGNMTRVYYK
Sbjct: 467 KTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHTIIRLQLWDIAGQERFGNMTRVYYK 526

Query: 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPA 590
           EAVGAFIVFDVTR+AT DAV+KWKQDLD+KV LPDG+PIPCVLLANKCDQ KEG+ N+PA
Sbjct: 527 EAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCVLLANKCDQQKEGLVNSPA 586

Query: 591 KIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV-QANGDSHATSEAVFSLN 649
           K+DE+ KE NFSGWFETSAK+NINI++AAK LV KIL+ND+V + NG    T    F+L+
Sbjct: 587 KMDEYCKEKNFSGWFETSAKENINIEEAAKFLVNKILQNDQVMKGNGSQDQTDGERFALS 646

Query: 650 RNSQETKNGRNCAC 663
           ++   +K  ++C C
Sbjct: 647 QSPTSSK--KSCGC 658

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866195|ref|XP_003708556.1| PREDICTED: uncharacterized protein LOC100874872 [Megachile rotundata]

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 159/211 (75%), Positives = 184/211 (87%), Gaps = 1/211 (0%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           SS+  +P + + +KRE LYKILVIGELGAGKTSIIKRYVHQFFS HYRATIGVDFALKVL
Sbjct: 444 SSQNNAPNAGVGEKREHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVL 503

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           +WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR+AT DAV+KWKQDLD+K
Sbjct: 504 NWDPHTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSK 563

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
           V LPDG+PIPCVLLANKCDQ KEG+ N+PAK+DE+ KE NF+GWFETSAK+NINI++AA+
Sbjct: 564 VQLPDGSPIPCVLLANKCDQQKEGLVNSPAKMDEYCKEKNFAGWFETSAKENINIEEAAR 623

Query: 621 TLVQKILENDKV-QANGDSHATSEAVFSLNR 650
            LV KIL+ND++ + NG    T    F+LN+
Sbjct: 624 FLVNKILQNDQLMKGNGSQDQTDGERFALNQ 654

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202148|gb|EFN81648.1| Ras-related protein Rab-32 [Harpegnathos saltator]

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 160/212 (75%), Positives = 183/212 (86%), Gaps = 3/212 (1%)

Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           +KRE LYKILVIGELGAGKTSIIKRYVHQFFS HYRATIGVDFALKVL+WD  TIIRLQL
Sbjct: 448 EKREHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHTIIRLQL 507

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WDIAGQERFGNMTRVYYKEAVGAFIVFDVTR+AT DAV+KWKQDLD+KV LPDG+PIPCV
Sbjct: 508 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSPIPCV 567

Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK- 631
           LLANKCDQ KEG+ N+P K+DE+ KE NFSGWFETSAK+NINI++AA+ LV KIL+ND+ 
Sbjct: 568 LLANKCDQHKEGLVNSPNKMDEYCKEKNFSGWFETSAKENINIEEAARFLVNKILQNDQL 627

Query: 632 VQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           ++ NG    T    F+LN++    K  ++CAC
Sbjct: 628 LKGNGSQDQTDGERFTLNQSPTSAK--KSCAC 657

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114529|ref|XP_001652315.1| rab32 [Aedes aegypti] gi|157114533|ref|XP_001652317.1| rab32 [Aedes aegypti] gi|108877258|gb|EAT41483.1| AAEL006880-PB [Aedes aegypti] gi|108877260|gb|EAT41485.1| AAEL006880-PA [Aedes aegypti]

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/298 (57%), Positives = 216/298 (72%), Gaps = 12/298 (4%)

Query: 367 LPSAAAAASDVKSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETAASP 426
           + S+ A+ ++  + SDL+ ++ S+ +  ++   R++ +  + +          K  A S 
Sbjct: 8   VVSSVASRTNGGATSDLELDLGSVKSADISGTLRRRSSILRGWI---------KRGAESR 58

Query: 427 NTSVVAGKTSITNGSSKEVSPYSKMP-DKREFLYKILVIGELGAGKTSIIKRYVHQFFSP 485
             SV   +  +  G +   S  S  P +KRE LYKILVIGELG GKTS IKRYVHQFFS 
Sbjct: 59  GGSVTHQRQHLQQGRTMTKSNMSTAPTEKREHLYKILVIGELGTGKTSFIKRYVHQFFSQ 118

Query: 486 HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA 545
           +YRATIGVDFALKVL+WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR A
Sbjct: 119 NYRATIGVDFALKVLNWDQNTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRNA 178

Query: 546 TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF 605
           TF+AV+KWKQDLD+KV LP+G PIPC+LLANK DQPK+GI   PAK+DE++KEH F+GWF
Sbjct: 179 TFEAVIKWKQDLDSKVQLPNGKPIPCILLANKSDQPKQGIVTTPAKLDEYVKEHGFAGWF 238

Query: 606 ETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           ETSAK+N+NI++AAK+LV KIL NDK Q N      S+  F+L   S+++   +NCAC
Sbjct: 239 ETSAKENVNIEEAAKSLVNKILMNDK-QTNAGEIVDSDR-FALAGGSKDSHQKKNCAC 294

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027672|gb|EGI67740.1| Ras-related protein Rab-32 [Acromyrmex echinatior]

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 184/212 (86%), Gaps = 3/212 (1%)

Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           +KRE LYKILVIGELGAGKTSIIKRYVHQFFS HYRATIGVDFALKVL+WD  TIIRLQL
Sbjct: 78  EKREHLYKILVIGELGAGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDPHTIIRLQL 137

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WDIAGQERFGNMTRVYYKEAVGAFIVFDVTR+AT DAV+KWKQDLD+KV LPDG+ IPCV
Sbjct: 138 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRSATLDAVVKWKQDLDSKVQLPDGSSIPCV 197

Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV 632
           LLANKCDQ KEG+ N+PAK+DE+ KE NFSGWFETSAK+NINI++AAK LV KIL+ND+V
Sbjct: 198 LLANKCDQQKEGLINSPAKMDEYCKEKNFSGWFETSAKENINIEEAAKFLVNKILQNDQV 257

Query: 633 -QANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
            + NG    T    F+LN++   +K  ++C+C
Sbjct: 258 IRDNGVQDQTDNERFTLNQSPTSSK--KSCSC 287

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608836|gb|EHJ66182.1| Rab-related protein [Danaus plexippus]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 182/227 (80%), Gaps = 3/227 (1%)

Query: 440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
           GS  E S  +   ++RE LYKILVIGELG GKTSIIKRYVHQFFS HYRATIGVDFALKV
Sbjct: 403 GSDDEPSHATASAERREHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKV 462

Query: 500 LSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA 559
           L+WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDV+R ATFDAV+KWK DLD 
Sbjct: 463 LNWDANTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVSRVATFDAVVKWKNDLDT 522

Query: 560 KVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
           KV LPDG+PIPC+LLANKCDQ KEGI N+P K++E+ +E  F+GWFETSAK+NINI++AA
Sbjct: 523 KVQLPDGSPIPCILLANKCDQQKEGIVNSPGKMEEYCREKGFAGWFETSAKENINIEEAA 582

Query: 620 KTLVQKILENDKVQANGDSHATSEAV---FSLNRNSQETKNGRNCAC 663
           ++LV KIL NDK+  + D      A+    +   NS+   + ++CAC
Sbjct: 583 RSLVNKILLNDKLLQSSDKDGERFALDHKIANGENSRAAGSSKSCAC 629

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114531|ref|XP_001652316.1| rab32 [Aedes aegypti] gi|403182835|gb|EJY57660.1| AAEL006880-PC [Aedes aegypti]

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 184/223 (82%), Gaps = 3/223 (1%)

Query: 442 SKEVSPYSKMP-DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           S  +S  S  P +KRE LYKILVIGELG GKTS IKRYVHQFFS +YRATIGVDFALKVL
Sbjct: 12  SDNLSNMSTAPTEKREHLYKILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVL 71

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           +WD  TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR ATF+AV+KWKQDLD+K
Sbjct: 72  NWDQNTIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRNATFEAVIKWKQDLDSK 131

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
           V LP+G PIPC+LLANK DQPK+GI   PAK+DE++KEH F+GWFETSAK+N+NI++AAK
Sbjct: 132 VQLPNGKPIPCILLANKSDQPKQGIVTTPAKLDEYVKEHGFAGWFETSAKENVNIEEAAK 191

Query: 621 TLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           +LV KIL NDK Q N      S+  F+L   S+++   +NCAC
Sbjct: 192 SLVNKILMNDK-QTNAGEIVDSDR-FALAGGSKDSHQKKNCAC 232

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	663
FB|FBgn0002567	686	ltd "lightoid" [Drosophila mel	0.365	0.352	0.619	2.3e-78
UNIPROTKB|Q13637	225	RAB32 "Ras-related protein Rab	0.310	0.915	0.652	9.6e-73
UNIPROTKB|F1S747	226	RAB32 "Ras-related protein Rab	0.266	0.783	0.747	6.7e-72
UNIPROTKB|E1BA60	225	RAB32 "Uncharacterized protein	0.280	0.826	0.716	8.6e-72
UNIPROTKB|F1NBL3	227	RAB32 "Uncharacterized protein	0.303	0.885	0.669	1.4e-71
MGI|MGI:1915094	223	Rab32 "RAB32, member RAS oncog	0.288	0.856	0.682	1.8e-71
UNIPROTKB|Q06AU5	226	RAB32 "Ras-related protein Rab	0.266	0.783	0.741	2.9e-71
ZFIN|ZDB-GENE-031006-10	213	rab32a "RAB32a, member RAS onc	0.274	0.854	0.727	1.6e-70
UNIPROTKB|F1PSK7	229	RAB38 "Uncharacterized protein	0.288	0.834	0.696	5.5e-70
UNIPROTKB|Q63483	211	Rab38 "Protein Rab38" [Rattus	0.265	0.834	0.744	5.5e-70

FB|FBgn0002567 ltd "lightoid" [Drosophila melanogaster (taxid:7227)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 156/252 (61%), Positives = 184/252 (73%)

Query:   416 SNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSII 475
             S  + +T    N   +     +T     E +  +   DKRE LYKILVIGELG GKTS I
Sbjct:   441 SEEQADTTEPENAKPMPAFGDLTMDQEMEPAIMTSTSDKREHLYKILVIGELGTGKTSFI 500

Query:   476 KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535
             KRYVHQFFS +YRATIGVDFALKVL WD  TI+RLQLWDIAGQERFGNMTRVYYKEAVGA
Sbjct:   501 KRYVHQFFSQNYRATIGVDFALKVLQWDANTIVRLQLWDIAGQERFGNMTRVYYKEAVGA 560

Query:   536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF 595
             FIVFDVTR+ TFD V KWK+DLD+KV LPDG+PIPC+LLANKCDQ K+GI   P K+DE+
Sbjct:   561 FIVFDVTRSGTFDCVSKWKEDLDSKVQLPDGSPIPCILLANKCDQEKQGIITQPEKMDEY 620

Query:   596 IKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV----QANGDSHATSEAVFSLNRN 651
             ++E+ F+GWFETSAK+NINID+AA+ LV KIL NDK+     A+GD    S A    +  
Sbjct:   621 VRENGFAGWFETSAKENINIDEAARALVNKILINDKLISADLADGDKFNLSAA----DAT 676

Query:   652 SQETKNGRNCAC 663
               + KN   C+C
Sbjct:   677 GSDAKN--KCSC 686

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0005525 "GTP binding" evidence=ISS

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0003924 "GTPase activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0005622 "intracellular" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|Q13637 RAB32 "Ras-related protein Rab-32" [Homo sapiens (taxid:9606)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 137/210 (65%), Positives = 171/210 (81%)

Query:   452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
             P+ RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD  T++RLQ
Sbjct:    19 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQ 78

Query:   512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
             LWDIAGQERFGNMTRVYYKEAVGAF+VFD++R++TF+AVLKWK DLD+KV LP+G+PIP 
Sbjct:    79 LWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPA 138

Query:   572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
             VLLANKCDQ K+  + +P+++D+F KEH F+GWFETSAKDNINI++AA+ LV+KIL N +
Sbjct:   139 VLLANKCDQNKDS-SQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQ 197

Query:   632 VQANGDSHATSEAVFSLNRNSQETKNGRNC 661
                N ++         L++ +   +N   C
Sbjct:   198 SFPNEENDVDK---IKLDQETLRAENKSQC 224

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0090382 "phagosome maturation" evidence=IMP

UNIPROTKB|F1S747 RAB32 "Ras-related protein Rab-32" [Sus scrofa (taxid:9823)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 133/178 (74%), Positives = 156/178 (87%)

Query:   452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
             P+ RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD  T++RLQ
Sbjct:    21 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQ 80

Query:   512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
             LWDIAGQERFGNMTRVYYKEAVGA +VFD++R +TF+AVLKWK DLD+KV LP+G+PIP 
Sbjct:    81 LWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSTFEAVLKWKNDLDSKVHLPNGSPIPA 140

Query:   572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
             VLLANKCDQ K+    NP+++D+F KEH F+GWFETSAKDNINID+AA+ LV+ IL N
Sbjct:   141 VLLANKCDQKKDS-GQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILAN 197

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BA60 RAB32 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 134/187 (71%), Positives = 159/187 (85%)

Query:   452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
             P+  E L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD  T++RLQ
Sbjct:    20 PETSEHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQ 79

Query:   512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
             LWDIAGQERFGNMTRVYYKEAVGAFIVFD++R +TFDAVLKWK DLD+KV LP+G+PIP 
Sbjct:    80 LWDIAGQERFGNMTRVYYKEAVGAFIVFDISRGSTFDAVLKWKSDLDSKVHLPNGSPIPA 139

Query:   572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
             VLLANKCDQ K+     P+++D+F KEH F+GWFETSAKDN+NID+AA+ LV+ IL N +
Sbjct:   140 VLLANKCDQKKDS-GQTPSQMDQFCKEHGFTGWFETSAKDNVNIDEAARFLVENILANHQ 198

Query:   632 VQANGDS 638
                N ++
Sbjct:   199 SFPNEEN 205

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1NBL3 RAB32 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 138/206 (66%), Positives = 167/206 (81%)

Query:   433 GKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG 492
             G+ S+  G      P S + + RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIG
Sbjct:     6 GRASMAGGEG----PVSGVAESREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIG 61

Query:   493 VDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK 552
             VDFALKV++WD +T++RLQLWDIAGQERFGNMTRVYYKEAVGAF+VFDVTR +TF+AV K
Sbjct:    62 VDFALKVINWDSKTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDVTRGSTFEAVSK 121

Query:   553 WKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612
             WK DLD+KV LP+G+PIP VLLANKCDQ K+G + N +++D+F +E  F GWFETSAKDN
Sbjct:   122 WKHDLDSKVLLPNGSPIPAVLLANKCDQKKDG-SQNLSQMDQFCREGGFIGWFETSAKDN 180

Query:   613 INIDDAAKTLVQKILENDKVQANGDS 638
             INID+AA+ LV+ IL N K   N ++
Sbjct:   181 INIDEAARFLVENILANYKTFPNEEN 206

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1915094 Rab32 "RAB32, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 131/192 (68%), Positives = 164/192 (85%)

Query:   440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
             G  ++ +  +  P+ RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKV
Sbjct:     5 GLGQQGASATAAPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKV 64

Query:   500 LSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA 559
             L+WD  T++RLQLWDIAGQERFGNMTRVYYKEA+GAF+VFD++R++TFDAVLKWK DLD+
Sbjct:    65 LNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDS 124

Query:   560 KVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
             KV LP+G+PIP VLLANKCDQ K+  + +P+++D+F K+H F+GWFETSAKDNINID+A 
Sbjct:   125 KVHLPNGSPIPAVLLANKCDQKKDN-SQSPSQMDQFCKDHGFTGWFETSAKDNINIDEAT 183

Query:   620 KTLVQKILENDK 631
             + LV+ +L N +
Sbjct:   184 RFLVENMLANQQ 195

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0090382 "phagosome maturation" evidence=ISO

UNIPROTKB|Q06AU5 RAB32 "Ras-related protein Rab-32" [Sus scrofa (taxid:9823)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 132/178 (74%), Positives = 155/178 (87%)

Query:   452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
             P+ RE L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD  T++RLQ
Sbjct:    21 PETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQ 80

Query:   512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
             LWDIAGQERFGNMTRVYYKEAVGA +VFD++R + F+AVLKWK DLD+KV LP+G+PIP 
Sbjct:    81 LWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPA 140

Query:   572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
             VLLANKCDQ K+    NP+++D+F KEH F+GWFETSAKDNINID+AA+ LV+ IL N
Sbjct:   141 VLLANKCDQKKDS-GQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILAN 197

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0090382 "phagosome maturation" evidence=ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

ZFIN|ZDB-GENE-031006-10 rab32a "RAB32a, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 136/187 (72%), Positives = 158/187 (84%)

Query:   455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
             +E+L+K+LVIGELG GKTSIIKRYVHQ FS HYRATIGVDFALKVL+WD +T++RLQLWD
Sbjct:    10 KEYLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSKTLVRLQLWD 69

Query:   515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
             IAGQERFGNMTRVYYKEAVGAFIVFD+TR +TF+AV KWK DLD KV L +GNPIP VLL
Sbjct:    70 IAGQERFGNMTRVYYKEAVGAFIVFDITRGSTFEAVSKWKHDLDTKVKLANGNPIPSVLL 129

Query:   575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK--- 631
             ANKCDQ K+G +NN + +D F KE  F GWFETSAK+NIN+D+AA+ LV+ IL NDK   
Sbjct:   130 ANKCDQKKDG-SNNSSLMDNFCKEAGFLGWFETSAKENINVDEAARFLVENILLNDKGLP 188

Query:   632 -VQANGD 637
               + NGD
Sbjct:   189 YEENNGD 195

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PSK7 RAB38 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 133/191 (69%), Positives = 156/191 (81%)

Query:   440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
             G S    P       +E LYK+LVIG+LG GKTSIIKRYVHQ FS HYRATIGVDFALKV
Sbjct:     9 GGSARGRPARMQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKV 68

Query:   500 LSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA 559
             L WD ET++RLQLWDIAGQERFGNMTRVYY+EA+GAFIVFDVTR ATF+AV KWK DLD+
Sbjct:    69 LHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVTKWKNDLDS 128

Query:   560 KVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
             K++LP+G P+  VLLANKCDQ K+ + NN  K+D+F KEH F GWFETSAK+NINID+A+
Sbjct:   129 KLSLPNGKPVSVVLLANKCDQGKDVLINNGLKMDQFCKEHGFVGWFETSAKENINIDEAS 188

Query:   620 KTLVQKILEND 630
             + LV+ IL N+
Sbjct:   189 RCLVKHILANE 199

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q63483 Rab38 "Protein Rab38" [Rattus norvegicus (taxid:10116)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 131/176 (74%), Positives = 153/176 (86%)

Query:   455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
             +E LYK+LVIG+LG GKTSIIKRYVHQ FS HYRATIGVDFALKVL WD ET++RLQLWD
Sbjct:     6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65

Query:   515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
             IAGQERFGNMTRVYY+EA+GAFIVFDVTR ATF+AV KWK DLD+K+TLP+G P+  VLL
Sbjct:    66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLL 125

Query:   575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
             ANKCDQ K+ + NN  K+D+F KEH F GWFETSAK+NINID+A++ LV+ IL N+
Sbjct:   126 ANKCDQGKDVLVNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANE 181

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54QR3	RB32A_DICDI	No assigned EC number	0.5961	0.3092	0.9360	yes	N/A
Q06AU5	RAB32_PIG	No assigned EC number	0.7333	0.2699	0.7920	yes	N/A
Q9CZE3	RAB32_MOUSE	No assigned EC number	0.6822	0.2880	0.8565	yes	N/A
Q13637	RAB32_HUMAN	No assigned EC number	0.7457	0.2654	0.7822	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	663
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-115
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-56
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-54
pfam00071	162	pfam00071, Ras, Ras family	2e-42
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-40
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-36
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-35
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-35
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-34
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-34
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	6e-32
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-31
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	8e-31
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-30
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-30
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-28
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-28
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-28
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-27
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-27
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-27
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-27
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-27
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-27
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	8e-27
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-27
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	9e-26
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-25
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-25
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-25
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-21
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-21
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-21
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-21
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-20
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-19
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-19
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-19
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-19
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-19
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-18
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-18
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-18
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-18
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-17
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-17
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	6e-16
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-16
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	9e-15
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	8e-14
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-13
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	5e-13
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-13
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-12
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-12
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-12
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-11
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-11
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-11
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-10
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-10
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-10
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	7e-10
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-09
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-09
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	5e-09
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-08
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-08
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	7e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	7e-08
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-08
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-07
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-07
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-07
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	9e-07
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	1e-06
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-06
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	5e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	5e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	8e-05
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-04
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-04
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-04
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	4e-04
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	5e-04
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	9e-04
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	0.002
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	0.004

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  344 bits (884), Expect = e-115
 Identities = 128/205 (62%), Positives = 158/205 (77%), Gaps = 5/205 (2%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K+LVIG+LG GKTSIIKRYVH  FS HY+ATIGVDFALKV+ WD  T++RLQLWDIAGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERFG MTRVYYK AVGA IVFDVTR +TF+AVLKWK DLD+KVTLP+G PIP +LLANKC
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDS 638
           D  KE +A +P ++D+F KE+ F GWFETSAK+NINI++A + LV+ IL+NDK       
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDK-----GL 175

Query: 639 HATSEAVFSLNRNSQETKNGRNCAC 663
            +      ++    QET   ++ +C
Sbjct: 176 QSPEPDEDNVIDLKQETTTSKSKSC 200

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  187 bits (477), Expect = 4e-56
 Identities = 64/178 (35%), Positives = 105/178 (58%), Gaps = 21/178 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +KI++IG+ G GK+S++ R+    FS  Y++TIGVDF  K +  D + + +LQ+WD AGQ
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRV-KLQIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++T  YY+ AVGA +V+D+T   +F+ +  W ++L      P+   +  +L+ NK 
Sbjct: 60  ERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREY-ASPN---VVIMLVGNKS 115

Query: 579 DQP-------KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D         +E         + F +EH    +FETSAK N N+++A + L ++IL+ 
Sbjct: 116 DLEEQRQVSREEA--------EAFAEEHGLP-FFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  181 bits (463), Expect = 5e-54
 Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 7/166 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +KI++IG+ G GKTS++ R+V   FS +Y++TIGVDF  K +  D    ++LQ+WD AGQ
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVD-GKKVKLQIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++T  YY+ A GA +V+DVT   +F+ + KW  +L           IP +L+ NK 
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA----PPNIPIILVGNKS 115

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
           D   E    +  +  +F KE+    +FETSAK   N+D+A ++L +
Sbjct: 116 DLEDE-RQVSTEEAQQFAKENGLL-FFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  150 bits (381), Expect = 2e-42
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 21/176 (11%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G+ G GK+S++ R+    F   Y  TIGVDF  K +  D +T+ +LQ+WD AGQE
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTV-KLQIWDTAGQE 59

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF  +  +YY+ A G  +V+D+T   +F+ V KW +++           +P VL+ NKCD
Sbjct: 60  RFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLVGNKCD 115

Query: 580 -------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
                    +EG            KE     + ETSAK N N+++A + L ++IL+
Sbjct: 116 LEDQRVVSTEEGE--------ALAKELGLP-FMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  144 bits (366), Expect = 3e-40
 Identities = 63/172 (36%), Positives = 107/172 (62%), Gaps = 9/172 (5%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+KI++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+WD 
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTI-KAQIWDT 59

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA +V+D+T+ +TF+ V +W ++L       D N I  +L+ 
Sbjct: 60  AGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHA---DSN-IVIMLVG 115

Query: 576 NKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NK D      +    AK   F +++  S + ETSA D  N+++A K L+ +I
Sbjct: 116 NKSDLRHLRAVPTEEAK--AFAEKNGLS-FIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  134 bits (339), Expect = 2e-36
 Identities = 62/174 (35%), Positives = 107/174 (61%), Gaps = 4/174 (2%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K ++ D + ++ LQ+WD AGQ
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVD-DRLVTLQIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   +Y+ A    +V+DVT   +F+++  W+ +   + +  D    P V+L NK 
Sbjct: 60  ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           D + K  ++   A+  ++ K      +FETSAK+ IN+D A +T+ +  LE +K
Sbjct: 120 DLEEKRQVSTKKAQ--QWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEK 171

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  130 bits (330), Expect = 2e-35
 Identities = 61/173 (35%), Positives = 104/173 (60%), Gaps = 7/173 (4%)

Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +T+ +LQ+WD A
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTV-KLQIWDTA 59

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQERF  +T  YY+ A G  IV+DVT   +F+ V +W Q++D +    + N +   L+ N
Sbjct: 60  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEID-RYASENVNKL---LVGN 115

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           KCD   +    +  +  EF  E     + ETSAK+  N+++A  T+ ++I + 
Sbjct: 116 KCDLTDK-KVVDYTEAKEFADELGIP-FLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  129 bits (326), Expect = 6e-35
 Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 7/168 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            KIL+IG+ G GK+S++ R+    F     +TIGVDF +K ++ D + + +L +WD AGQ
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKV-KLAIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF  +T  YY+ A G  +V+DVTR  TFD +  W  +LD   T PD      +L+ NK 
Sbjct: 60  ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPD---AVKMLVGNKI 116

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D+    +     +  +F ++HN   + ETSAK  I +  A + LV+KI
Sbjct: 117 DKENREVTREEGQ--KFARKHNML-FIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  128 bits (323), Expect = 2e-34
 Identities = 54/169 (31%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GKTS++ RYV   F+  + +T    F  K ++   + I  L +WD AGQ
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRID-LAIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+  +  +YY++A GA +V+D+T A +F  V KW ++L        GN I  V++ NK 
Sbjct: 60  ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR----GNNISLVIVGNKI 115

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D  ++    + ++ +E+ K       FETSAK    I++   +L ++++
Sbjct: 116 DLERQR-VVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  126 bits (320), Expect = 5e-34
 Identities = 60/174 (34%), Positives = 106/174 (60%), Gaps = 7/174 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG+ G GK+ ++ R+    F+P + +TIG+DF ++ +  D + I +LQ+WD 
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKI-KLQIWDT 59

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ A+G  +V+D+T   +F+ +  W +++D   +  D   +   L+ 
Sbjct: 60  AGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-EDVERM---LVG 115

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           NKCD   E    +  + +   +E+    + ETSAK NIN+++A  TL + IL+ 
Sbjct: 116 NKCDME-EKRVVSKEEGEALAREYGIK-FLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  121 bits (305), Expect = 6e-32
 Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +G+   GKTSII R+++  F   Y+ATIG+DF  K +  D +T +RLQLWD AGQ
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKT-VRLQLWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   Y +++  A +V+D+T   +FD   KW  D    V    GN +  VL+ NK 
Sbjct: 60  ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDD----VRDERGNDVIIVLVGNKT 115

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   +    +  + ++  KE+N   + ETSAK   N+    K + Q +
Sbjct: 116 DLSDKR-QVSTEEGEKKAKENNAM-FIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  118 bits (298), Expect = 6e-31
 Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 23/182 (12%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
            +L+K ++IG+ G GK+ ++ ++  + F P +  TIGV+F  ++++ D + I +LQ+WD 
Sbjct: 2   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQI-KLQIWDT 60

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLL 574
           AGQE F ++TR YY+ A GA +V+D+TR  TF+ +  W +D          N  +  +L+
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-----SNSNMTIMLI 115

Query: 575 ANKCDQPK-------EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            NKCD          EG        + F +EH    + ETSAK   N+++A     ++I 
Sbjct: 116 GNKCDLESRREVSYEEG--------EAFAREHGLI-FMETSAKTASNVEEAFINTAKEIY 166

Query: 628 EN 629
           + 
Sbjct: 167 DK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  117 bits (296), Expect = 8e-31
 Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 10/165 (6%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+KI++IG+   GKT +++R+    FS     TIGVDF +K L    + + +LQ+WD 
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRV-KLQIWDT 59

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T+ YY+ A GA I +D+TR ++F++V  W ++    V     + +  +L+ 
Sbjct: 60  AGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEE----VEKYGASNVVLLLIG 115

Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHN-FSGWFETSAKDNINIDDA 618
           NKCD + +  +    A     + EH       ETSAK++ N+++A
Sbjct: 116 NKCDLEEQREVLFEEA---CTLAEHYGILAVLETSAKESSNVEEA 157

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  117 bits (295), Expect = 3e-30
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 12/205 (5%)

Query: 455 REF--LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           R++  L+K+L+IG+ G GK+S++ R+    FS  Y  TIGVDF ++ +  + E + +LQ+
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERV-KLQI 59

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AGQERF  +T  YY+   G  +V+DVT   +F  V +W Q+++        + +  V
Sbjct: 60  WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-----DDVCKV 114

Query: 573 LLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           L+ NK D P ++ +    A   +F  +   S  FETSAK+NIN+++    + + +L   K
Sbjct: 115 LVGNKNDDPERKVVETEDAY--KFAGQMGIS-LFETSAKENINVEEMFNCITELVLRAKK 171

Query: 632 VQANGDSHATSEAVFSLNRNSQETK 656
                        V  L +NS+  K
Sbjct: 172 DNLAKQQQQQQNDVVKLPKNSKRKK 196

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  117 bits (295), Expect = 4e-30
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 23/221 (10%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +KI+V+G+ G GKT+++ R V   F   Y  TIG           +   I+LQLWD AGQ
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLD-PAKTIEPYRRNIKLQLWDTAGQ 64

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           E + ++   YY+ A G  IV+D T R ++ +   +W ++L         + +P +L+ NK
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELREL----APDDVPILLVGNK 120

Query: 578 CD-----QPKEGIANNPAKIDEFIKEHNF--------SGWFETSAK--DNINIDDAAKTL 622
            D        E I N   +    +                 ETSAK     N+++  K L
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 623 VQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           ++K+LE  +       +   +     N   Q      NC  
Sbjct: 181 LRKLLEEIE--KLVLKNELRQLDRLNNPIEQAALASFNCVL 219

Length = 219

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  111 bits (280), Expect = 1e-28
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 7/171 (4%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           ++K+L+IG    GKTS + RY    F+  + +T+G+DF +K + + ++  I+LQ+WD AG
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-YRNDKRIKLQIWDTAG 59

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QER+  +T  YY+ A+G  +++D+T   +F+AV  W   +    T    N    +L+ NK
Sbjct: 60  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK---TYSWDNA-QVILVGNK 115

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           CD   E +    A+    + +     +FE SAK+NIN+    + LV  I +
Sbjct: 116 CDMEDERVV--SAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  112 bits (282), Expect = 2e-28
 Identities = 61/180 (33%), Positives = 107/180 (59%), Gaps = 19/180 (10%)

Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +L+K ++IG+ G GK+ ++ ++  + F P +  TIGV+F  ++++ D++ I +LQ+WD A
Sbjct: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPI-KLQIWDTA 63

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW----KQDLDAKVTLPDGNPIPCV 572
           GQE F ++TR YY+ A GA +V+D+TR  TF+ +  W    +Q  +A +T+        +
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI--------M 115

Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA----AKTLVQKILE 628
           L+ NKCD      A +  + ++F KEH    + E SAK   N+++A    A  + +KI +
Sbjct: 116 LIGNKCDLAHRR-AVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAKIYKKIQD 173

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  111 bits (280), Expect = 5e-28
 Identities = 58/175 (33%), Positives = 100/175 (57%), Gaps = 9/175 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           ++++VIG+   GK+S++KR+    F+     T+GVDF  +++  +    I+LQLWD AGQ
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV--LLAN 576
           ERF ++TR YY+ +VG  +VFD+T   +F+ V  W +  +A+  +    P   V  L+ +
Sbjct: 63  ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLE--EARSHI---QPHRPVFILVGH 117

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           KCD   +       + ++  K+     + ETSA+   N+++A + L Q+I E  K
Sbjct: 118 KCDLESQRQV-TREEAEKLAKDLGMK-YIETSARTGDNVEEAFELLTQEIYERIK 170

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  109 bits (273), Expect = 1e-27
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 17/165 (10%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K L+IG  G GK+ ++ +++   F      TIGV+F  +V++   +++ +LQ+WD AGQ
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSV-KLQIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++TR YY+ A GA +V+D+T   +F+A+  W  D     + PD   I  +L+ NK 
Sbjct: 60  ERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLAS-PD---IVIILVGNKK 115

Query: 579 DQPKEGI-----ANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618
           D   +       A+  A+ +  +       + ETSA    N+++A
Sbjct: 116 DLEDDREVTFLEASRFAQENGLL-------FLETSALTGENVEEA 153

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  110 bits (276), Expect = 2e-27
 Identities = 58/171 (33%), Positives = 102/171 (59%), Gaps = 7/171 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+KI++IG+ G GK++I+ R+    F    ++TIGV+FA + L  + +T+ + Q+WD 
Sbjct: 10  DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV-KAQIWDT 68

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA +V+D+T+  TFD V +W ++L       D N I  ++  
Sbjct: 69  AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA---DSN-IVIMMAG 124

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NK D     + +   +  + + E     + ETSA +  N++ A +T++ +I
Sbjct: 125 NKSDL--NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173

Length = 216

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  108 bits (272), Expect = 2e-27
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 7/167 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++V+G  G GK+++  R+V   F   Y  TI  D   K +  D ET   L + D AGQE
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETY-TLDILDTAGQE 58

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
            F  M   Y +   G  +V+ +T   +F+ +   ++ +     + D   +P VL+ NKCD
Sbjct: 59  EFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQIL---RVKDKEDVPIVLVGNKCD 115

Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
              E    +  + +   +E     + ETSAK NINID+   TLV++I
Sbjct: 116 LENERQV-STEEGEALAEEWG-CPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  108 bits (272), Expect = 2e-27
 Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 9/170 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+   GK+SI+ R+V   FS +  +TIG  F  + ++ D +T ++ ++WD AGQ
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F+    W ++L      P+   I   L  NK 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGP-PN---IVIALAGNKA 116

Query: 579 DQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D   +  ++   A+  E+  E+    + ETSAK   N+++    + +K+ 
Sbjct: 117 DLESKRQVSTEEAQ--EYADENG-LLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  108 bits (271), Expect = 2e-27
 Identities = 57/174 (32%), Positives = 100/174 (57%), Gaps = 9/174 (5%)

Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +++K ++IG++G GK+ ++ ++  + F      TIGV+F  +++  + + I +LQ+WD A
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKI-KLQIWDTA 59

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQERF  +TR YY+ A GA +V+D+TR +T++ +  W  D    +T P+       L+ N
Sbjct: 60  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPN---TVIFLIGN 115

Query: 577 KCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           K D + +  +    AK  +F  E+    + E SAK   N++DA     +KI +N
Sbjct: 116 KADLEAQRDVTYEEAK--QFADENGLL-FLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  108 bits (271), Expect = 2e-27
 Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 7/161 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+KI++IG  G GKT +++R+    F P   ATIGVDF +K +    E I +LQ+WD 
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKI-KLQIWDT 63

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF ++T+ YY+ A    + +D+T   +F  + +W ++++        N +  +L+ 
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN----NKVITILVG 119

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616
           NK D  +        +  E   +     + ETSAK++ N++
Sbjct: 120 NKIDLAER--REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  106 bits (267), Expect = 8e-27
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 8/167 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK-VLSWDHETIIRLQLWDIAGQ 518
           K++V+G    GK+S+I+R+V   F+  Y+ TIGVDF  K +     +  +RL LWD AGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E F  +T+ YY+ A    +VF  T   +F+A+  WK+ ++A+        IP VL+  K 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKI 116

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
           D   + +  N  + +   K       F TS KD+ N+ +  + L +K
Sbjct: 117 DLLDQAVITN-EEAEALAKRLQLP-LFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  106 bits (266), Expect = 9e-27
 Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 9/172 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +++L+IG+ G GKT ++ R+    F   + +TIGVDF +K +  D    +R+Q+WD AGQ
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDG-IKVRIQIWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+  +T+ YY+ A G F+V+D++   ++  ++KW  D+D     P+G      L+ NK 
Sbjct: 60  ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKI--LIGNKA 115

Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D + K  + +     ++  KE+    +FETSA  N NI ++   L + +L+ 
Sbjct: 116 DEEQKRQVGDEQG--NKLAKEYGMD-FFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  104 bits (260), Expect = 9e-26
 Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 18/184 (9%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + ++ +          
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL--DAKVTLP 564
            + LQLWD AGQERF ++T  ++++A+G  ++FD+T   +F  V  W   L   A    P
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 565 DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
           D      VL+ NK D P +   +   +  E   ++    +FETSA    N++ A +TL+ 
Sbjct: 122 D-----IVLIGNKADLPDQREVSE-RQARELADKYGIP-YFETSAATGQNVEKAVETLLD 174

Query: 625 KILE 628
            I++
Sbjct: 175 LIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  102 bits (256), Expect = 3e-25
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +KI+VIG+   GKT +  R+    F     ATIGVDF  + +  D E  I++QLWD AGQ
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGER-IKVQLWDTAGQ 61

Query: 519 ERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           ERF  +M + YY+       V+DVT  A+F ++  W ++ +      +   +P +L+ NK
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE---VPRILVGNK 118

Query: 578 CD-----QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611
           CD     Q    +A   A        H+    FETSAKD
Sbjct: 119 CDLREQIQVPTDLAQRFA------DAHSMP-LFETSAKD 150

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  101 bits (254), Expect = 4e-25
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++ +G  G GK+ IIKRY    F   Y  TIG+D+ +K +S  ++  +R+  +D++G  
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKE-VRVNFFDLSGHP 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVT-LPDGNPIPCVLLANKC 578
            +  +   +YK+  G  +V+DVT   +F+A+  W +++  +     +   I  V+ ANK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 579 DQPKEGIANNPAKIDE-----FIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           D  K         + E     + +   F   FETSA     +++  +TL   I++
Sbjct: 121 DLTK------HRAVSEDEGRLWAESKGFKY-FETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  101 bits (254), Expect = 6e-25
 Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    +    +   IR  +WD AGQ
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLDFHTNRGKIRFNVWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +   A I+FDVT   T+  V  W +DL         N IP VL  NK 
Sbjct: 60  EKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV----CEN-IPIVLCGNKV 114

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +     K   F ++ N   ++E SAK N N +     L +K+L N  ++
Sbjct: 115 DIKDRKV---KPKQITFHRKKNLQ-YYEISAKSNYNFEKPFLWLARKLLGNPNLE 165

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 93.7 bits (233), Expect = 1e-21
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 19/217 (8%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            KI+V+G+  +GKTS+I+R+  + F   Y+ TIG+DF  + ++      + LQ+WDI GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           +  G M   Y   A    +V+D+T + +F+ +  W   +  KV          VL+ NK 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVK-KVNEESETKPKMVLVGNKT 119

Query: 579 DQPKEGIANNPAKID---EFIKEHNFSGWFETSAK--DNINI---DDAAKTL-----VQK 625
           D       N     +    F +E++    F  SAK  D + +     AA+ L       +
Sbjct: 120 DLEH----NRQVTAEKHARFAQENDMESIF-VSAKTGDRVFLCFQRIAAELLGVKLSQAE 174

Query: 626 ILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCA 662
           + ++ +V     S  +   +      S   ++   CA
Sbjct: 175 LEQSQRVVKADVSRYSERTLREPVSRSVNKRSNSMCA 211

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 93.2 bits (231), Expect = 1e-21
 Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 10/171 (5%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           ++++IG  G GKTS+++R+    F    ++T+GVDF +K +    + I RLQ+WD AGQE
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RLQIWDTAGQE 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK-- 577
           RF ++T  YY+ A G  +V+D+T+  TFD + KW + +D K    D      +L+ NK  
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAE---LLLVGNKLD 116

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           C+  +E       K  + I    F    E SAKDN N+D+    LV  IL+
Sbjct: 117 CETDREITRQQGEKFAQQITGMRFC---EASAKDNFNVDEIFLKLVDDILK 164

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 91.9 bits (228), Expect = 1e-21
 Identities = 53/169 (31%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L K++++G+ G GK+S++ RYV   F      TIGV+F  K L  D    + LQ+WD AG
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTLQIWDTAG 63

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++   +Y+ +    + F V  + +F  +  WK++      + +    P V+L NK
Sbjct: 64  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 123

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D P+  ++   A+   + +++    +FETSAKD  N+  A +  V+++
Sbjct: 124 IDIPERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 91.7 bits (228), Expect = 5e-21
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y  T+GV+        +   I    +WD AGQ
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPI-CFNVWDTAGQ 68

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +   A I+FDVT   T+  V  W +D+  +V       IP VL+ NK 
Sbjct: 69  EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI-VRVC----ENIPIVLVGNKV 123

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    A+   F ++ N   +++ SAK N N +     L +++  +  + 
Sbjct: 124 DVKDRQVK---ARQITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARRLTNDPNLV 174

Length = 215

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 15/204 (7%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           +K++++G+ G GKT ++ R+    F    + AT+G+ F  KV++ D    ++LQ+WD AG
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDG-VKVKLQIWDTAG 59

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++T  YY++A    +++DVT  ++FD +  W  ++  +    D   +  +LL NK
Sbjct: 60  QERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEI-LEYAQSD---VVIMLLGNK 115

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGD 637
            D   E +       +   KE+    + ETSAK  +N+ + A T V K L++  V     
Sbjct: 116 ADMSGERVVKREDG-ERLAKEYGVP-FMETSAKTGLNV-ELAFTAVAKELKHRSV----- 167

Query: 638 SHATSEAVFSLNRNSQETKNGRNC 661
                E  F +    ++ K    C
Sbjct: 168 -EQPDEPKFKIQDYVEKQKKSSGC 190

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  D   K +  D E  + L + D AGQ
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCL-LDILDTAGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANK 577
           E F  M   Y +   G  +V+ +T   +F+ + K++ Q L  K    D + +P VL+ NK
Sbjct: 61  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVK----DRDDVPIVLVGNK 116

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +  +  +  E  ++     + ETSAK+ IN+D+A   LV++I
Sbjct: 117 CDLENERVV-STEEGKELARQWG-CPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 17/159 (10%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET---IIRLQLWDIA 516
           KI+++G+   GK+ +++R++   + P   +T    +AL +   + +     I +  WD A
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLST----YALTLYKHNAKFEGKTILVDFWDTA 57

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQERF  M   YY +A    +VFDVTR  T+  + KW ++L  +   P+   IPC+++AN
Sbjct: 58  GQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL--REYRPE---IPCIVVAN 112

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
           K D       +   K   F ++HN   ++  SA D  N+
Sbjct: 113 KIDLD----PSVTQKKFNFAEKHNLPLYY-VSAADGTNV 146

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  +++   F   Y  TI  D   K +  D E  + L + D AGQ
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCL-LDILDTAGQ 58

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANK 577
           E F  M   Y +   G  +V+ +T   +F+ + K++ Q L  K    D + +P VL+ NK
Sbjct: 59  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVK----DRDDVPIVLVGNK 114

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +  +  +  E  ++     + ETSAK+ +N+D+A   LV++I
Sbjct: 115 CDLESERVV-STEEGKELARQWG-CPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 86.0 bits (213), Expect = 5e-19
 Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 18/190 (9%)

Query: 447 PYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
           P  +  D     +K++++G+ G GKT+ +KR++   F   Y  TIGV+    V   D  T
Sbjct: 4   PNQQTVD--YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----VHPLDFFT 57

Query: 507 ---IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTL 563
               IR   WD AGQE+FG +   YY     A I+FDVT   T+  V  W +DL  +V  
Sbjct: 58  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC- 115

Query: 564 PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLV 623
                IP VL  NK D     +    AK   F ++ N   ++E SAK N N +     L 
Sbjct: 116 ---ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168

Query: 624 QKILENDKVQ 633
           +K+  +  + 
Sbjct: 169 RKLAGDPNLH 178

Length = 219

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 85.5 bits (211), Expect = 7e-19
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 13/207 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +KIL+IG+ G GK+S++  ++          TIGVDF +K L+   + + +L +WD AGQ
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRL-KLTIWDTAGQ 72

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCV--LLA 575
           ERF  +T  YY+ A G  +V+DVTR  TF  +   W ++++   T  D     CV  L+ 
Sbjct: 73  ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD-----CVKMLVG 127

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
           NK D+  E   +    +    KEH    + E SAK   N++   + L  KI+E   +   
Sbjct: 128 NKVDRESERDVSREEGM-ALAKEHGCL-FLECSAKTRENVEQCFEELALKIMEVPSLLEE 185

Query: 636 GDSHATSEAVFSLNRNSQETKNGRNCA 662
           G S A    +       Q   NG  C+
Sbjct: 186 G-STAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 83.3 bits (206), Expect = 1e-18
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 20/172 (11%)

Query: 462 LVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +V+G  G GK+S++   +       S     T   D  +K L    +  ++L L D  G 
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKEL---DKGKVKLVLVDTPGL 57

Query: 519 ERFGNM-----TRVYYKEAVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCV 572
           + FG +      R+  + A    +V D T   +  DA L   + L  +        IP +
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE-------GIPII 110

Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
           L+ NK D  +E       +++E  K       FE SAK    +D+  + L++
Sbjct: 111 LVGNKIDLLEEREVEELLRLEELAKILGVPV-FEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  +++  +F   Y  TI  D   K    D +   RL + D AGQ
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQ-WARLDILDTAGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANK 577
           E F  M   Y +   G  +VF VT   +F+ V K+  Q L  K    D +  P +L+ NK
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK----DRDEFPMILVGNK 116

Query: 578 CDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D   +  ++    +  E  ++     + ETSAKD +N+D A   LV+ I
Sbjct: 117 ADLEHQRQVSREEGQ--ELARQLKIP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 25/207 (12%)

Query: 460 KILVIGELGAGKTSIIKRYVH-QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           K++++G+   GKTS+++RYVH +F    Y+ TIG  F  K +    E ++ L +WD AG 
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-ERVVTLGIWDTAGS 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+  M+R+YY+ A  A + +D+T +++F+    W ++L     L +   I   L   K 
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ---NLEEHCKI--YLCGTKS 115

Query: 579 DQPKEGIANNPAKIDEF------IKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN-DK 631
           D  ++  +       +       IK  +    FETS+K   N+D+    L QK+ E+   
Sbjct: 116 DLIEQDRSLRQVDFHDVQDFADEIKAQH----FETSSKTGQNVDE----LFQKVAEDFVS 167

Query: 632 VQANGDSHATSEAVFSLNRNSQETKNG 658
              N      +E    L +        
Sbjct: 168 RANNQ---MNTEKGVDLGQKKNSYFYS 191

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 83.1 bits (205), Expect = 3e-18
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 464 IGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN 523
           +G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I R  +WD AGQE+FG 
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-RFNVWDTAGQEKFGG 59

Query: 524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583
           +   YY +   A I+FDVT   T+  V  W +DL  +V       IP VL  NK D    
Sbjct: 60  LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKVDVKDR 114

Query: 584 GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            +    AK   F ++ N   +++ SAK N N +     L +K++
Sbjct: 115 KVK---AKSITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLI 154

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 80.9 bits (200), Expect = 8e-18
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI  D   K +  D ET + L + D AGQ
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCL-LDILDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D + +P VL+ NKC
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQI---KRVKDSDDVPMVLVGNKC 116

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D     ++    +  +  K +    + ETSAK    +++A  TLV++I
Sbjct: 117 DLAARTVSTRQGQ--DLAKSYGIP-YIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 7/100 (7%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK---VLSWDHETIIRLQLWDIA 516
           K++V+G+L  GKT +I R+    F  +Y+ATIGVDF ++   VL         LQLWD A
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLG----VPFSLQLWDTA 57

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
           GQERF  +   YY+ A    IVFD+T  A+ +   +W +D
Sbjct: 58  GQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLED 97

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 79.4 bits (196), Expect = 3e-17
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 20/176 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YKI+V+G  G GK+++  ++V   F   Y  TI  D   K +  D      L++ D AG 
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCD-LEILDTAGT 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+F  M  +Y K   G  +V+ VT  A+ + + + ++ +   + + D + +P VL+ NK 
Sbjct: 60  EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQV---LRIKDSDNVPMVLVGNKA 116

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D         ++G+           ++     ++ETSA+   N+D+    LV++I+
Sbjct: 117 DLEDDRQVSREDGV--------SLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 75.6 bits (186), Expect = 6e-16
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  D   K +  D +  + L++ D AG 
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCM-LEILDTAGT 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL-DAKVTLPDGNPIPCVLLANK 577
           E+F  M  +Y K   G  +V+ +T  +TF+ +    QDL +  + + D   +P +L+ NK
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVGNK 115

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +     +  + +       + ETSAK  IN+++    LV++I
Sbjct: 116 CDLEDERVVGK--EQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 11/168 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPH-YRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
            KI+++G+   GK++++ R +    S   Y+     ++   V+  D +T  +  L D AG
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTY-KFNLLDTAG 60

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRA--ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           QE +  + R+YY+    +  VFD+        + + K  +++   +   +   +P +L+ 
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEI---IHHAESG-VPIILVG 116

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLV 623
           NK D      A     +     + N       SA+   NID A K + 
Sbjct: 117 NKIDLR---DAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 161

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 72.1 bits (177), Expect = 9e-15
 Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G  G GK+++  ++++  F   Y  T   D   K +  D E +  L + D AGQ
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQ-LNILDTAGQ 58

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANK 577
           E +  +   Y++   G  +VF +T   +F A+ +  +Q L  K    + + +P +L+ NK
Sbjct: 59  EDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVK----EDDNVPLLLVGNK 114

Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD + K  ++   A      ++   + + ETSAK   N+D     LV++I
Sbjct: 115 CDLEDKRQVSVEEAA--NLAEQWGVN-YVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 72.1 bits (176), Expect = 1e-14
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 483 FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT 542
           F  +Y++TIG+DF  K L  D E  +RLQLWD AGQERF ++   Y +++  A +V+D+T
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT 63

Query: 543 RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS 602
              +F+   KW QD+  +     G  +   L+ NK D    G        +   K   ++
Sbjct: 64  NRQSFENTTKWIQDILNE----RGKDVIIALVGNKTDL---GDLRKVTYEEGMQKAQEYN 116

Query: 603 GWF-ETSAKDNINIDDAAKTLVQKILENDKVQAN 635
             F ETSAK   NI    K +  K+   D   +N
Sbjct: 117 TMFHETSAKAGHNIKVLFKKIAAKLPNLDNSNSN 150

Length = 176

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++VIG+ G+GK+S++ + V   F P      G   A+  L  D +T + L +WD  G+E
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGL-LNIWDFGGRE 59

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV---LKWKQDLDAKVTLPDGNPIPCVLLAN 576
                  ++ K A    +V+D+T   + + V   + W  +L        G  IP +L+ N
Sbjct: 60  ELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKL-----GGKIPVILVGN 114

Query: 577 KC 578
           K 
Sbjct: 115 KL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  D   K +  D +  + L++ D AG 
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCM-LEILDTAGT 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+F  M  +Y K   G  +V+ +T   +F+ +   ++ +   + + D   +P +L+ NKC
Sbjct: 60  EQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQI---LRVKDTEDVPMILVGNKC 116

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   E + +         ++     + ETSAK  IN+D+    LV++I
Sbjct: 117 DLEDERVVSKEEGQ-NLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI ++G+   GKTS++ +YV   F   Y  T+GV+F  K +S    T I   +WD+ GQ 
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQR 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW 553
            F NM  +  K+AV    +FD+TR +T +++ +W
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEW 94

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 67.6 bits (165), Expect = 5e-13
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  +++   F   Y  TI  D   K    D ET + L + D AGQ
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCL-LDILDTAGQ 63

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   V+ +T  ++F+ +  +++ +   + + D + +P +L+ NKC
Sbjct: 64  EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQI---LRVKDKDRVPMILVGNKC 120

Query: 579 D-----QPKEGIANNPAKIDEFIKEHNFSGWF-ETSAKDNINIDDAAKTLVQKILENDK 631
           D     Q   G     AK        +F   F ETSAK  +N+D+A   LV++I +  K
Sbjct: 121 DLDSERQVSTGEGQELAK--------SFGIPFLETSAKQRVNVDEAFYELVREIRKYLK 171

Length = 189

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 66.8 bits (164), Expect = 7e-13
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+   GKT ++  Y    F   Y  T+  +++  V   D +  + L LWD AGQE
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTV-DGK-QVNLGLWDTAGQE 59

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y +     + F V   ++F+ V  KW  ++  K   P+   +P +L+  K 
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEI--KHYCPN---VPIILVGTKI 114

Query: 579 DQPKEGIANN----------PAKIDEFIKEHNFSGWFETSAKDNINI----DDAAKT 621
           D   +G              P + ++  KE     + E SA     +    D+A + 
Sbjct: 115 DLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETI----IRLQL 512
           +IL++G  GAGKT+I+ +          P    TIG +          ET+    ++  +
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIP----TIGFNV---------ETVEYKNVKFTV 47

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD+ GQ++   + + YY+   G   V D +     +     K +L   +   +    P +
Sbjct: 48  WDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEA---KNELHKLLNEEELKGAPLL 104

Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSG--W--FETSAKDNINIDDAAKTLVQK 625
           +LANK D P    A   +++ E +   +  G  W     SA     +D+    L+++
Sbjct: 105 ILANKQDLPG---ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L K L++G+   GK  I+           Y   +G+D+    +  D   + +LQLWD 
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRV-KLQLWDT 62

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           +GQ RF  + R Y + A G  +V+D+T   +FD + +W +++D          +P +L+ 
Sbjct: 63  SGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVG 117

Query: 576 NKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           N+     K  +     +  +   E N   +FE S   N NI ++   L + +L
Sbjct: 118 NRLHLAFKRQV---ATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 63.7 bits (155), Expect = 8e-12
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 21/176 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  DF  K +  D    + L++ D AG 
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSV-LEILDTAGT 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+F +M  +Y K   G  +V+ +    TF  +   +   D  V +     +P +L+ NK 
Sbjct: 60  EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMR---DQIVRVKGYEKVPIILVGNKV 116

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D          EG A         + E     + ETSAK    +++    +V+++ 
Sbjct: 117 DLESEREVSSAEGRA---------LAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALK-VLSWDHETIIRLQLWDIA 516
           +  V+G+   GK+++++ +      F  +Y  T G D  +K V   D    + L ++D A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQE F +M    +++     +V+DVT   +F+   +W   ++   T   G   P VL+ N
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW---INRVRTHSHGLHTPGVLVGN 118

Query: 577 KCD 579
           KCD
Sbjct: 119 KCD 121

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           I ++G   +GKT+++       FS     T+G  F ++ ++  + TI    +WD+ GQ R
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK---VWDLGGQPR 56

Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580
           F +M   Y +  V A IV+ V  AA  + +   K +L   +  P    IP ++L NK D 
Sbjct: 57  FRSMWERYCR-GVNA-IVY-VVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Query: 581 PKEGIANNPAKIDEFIKEHNFSG-------WFETSAKDNINIDDAAKTLVQ 624
           P          +DE I++ N           +  SAK+  NID     L++
Sbjct: 114 P------GALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIK 158

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 62.2 bits (151), Expect = 4e-11
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++V+G+ G GKT++  +     F   Y  TI  D   K +  D +  + L++ D AGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCM-LEVLDTAGQE 58

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
            +  +   + +E  G  +V+ +T  +TF+ V ++++ +  +V       +P +++ NKCD
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQI-QRVKDESAADVPIMIVGNKCD 117

Query: 580 QPKEGIANNPAKIDE---FIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           +  E   +     +E     +      + E SAK N+N++ A  TLV+ +
Sbjct: 118 KVYEREVST----EEGAALARRLG-CEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           Y+++V+G    GKT+I+ R++   F   Y  TI  DF  K+ S   E + +L + D +G 
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGE-VYQLDILDTSGN 58

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTL----PDGNPIPCVL 573
             F  M R+         +VF +    +F+ V + ++  L+ K  L     +   IP V+
Sbjct: 59  HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118

Query: 574 LANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTL 622
             NK D+          ++++ +       +FE SAK N N+D+  + L
Sbjct: 119 CGNKADR-DFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           Y+++V G  G GK+S++ R+V   F   Y  TI  D   +V+S    +I  LQ+ D  G 
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-SICTLQITDTTGS 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +F  M R+   +     +V+ +T   + +  LK   +L  ++   +   IP +L+ NKC
Sbjct: 60  HQFPAMQRLSISKGHAFILVYSITSKQSLEE-LKPIYELICEIKGNNLEKIPIMLVGNKC 118

Query: 579 DQ-PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           D+ P   ++++        +  N + + ETSAK N N+    + L Q++L  +K
Sbjct: 119 DESPSREVSSSEGA--ALARTWNCA-FMETSAKTNHNV----QELFQELLNLEK 165

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDF-ALKVLSWDHETIIRLQLWDIAGQ 518
           K++++G+ G GKTS+ K+ + + F     +T G++    K+ + + +  IRL +WD  GQ
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKK-IRLNVWDFGGQ 61

Query: 519 ERFGN-----MTR--VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           E +       +T   +Y        +VFD+        V  W + + A      G   P 
Sbjct: 62  EIYHATHQFFLTSRSLY-------LLVFDLRTGDEVSRVPYWLRQIKAF----GGVS-PV 109

Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
           +L+    D    E I    A   +F    N       S K+   I +  K + +
Sbjct: 110 ILVGTHIDESCDEDI-LKKALNKKFPAIIND--IHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++  GKTS++ RY+ + F     +T+G  F LK   W    I    +WD AG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTV-STVGGAFYLK--QWGPYNI---SIWDTAGRE 55

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFD-------------------AVLKWKQDL--D 558
           +F  +  +Y + A    + +DV+   + +                   AV+  K DL  +
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 559 AKVTLPDGNPIPCV-LLANKCDQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDN 612
             +   + +    V     +    ++  A         + + + S       FETSAK  
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 613 INIDDAAKTLVQKIL 627
            N+D+  + L   +L
Sbjct: 176 YNVDELFEYLFNLVL 190

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 21/180 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YKI+++G  G GK+++  +++   F  ++  TI   +  +    D+E  + L + D AGQ
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARI-DNEPAL-LDILDTAGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
             F  M   Y +   G  I + VT   +F    ++K+ L  +V L +   IP VL+ NK 
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKE-LITRVRLTE--DIPLVLVGNKV 117

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           D         +EG            +E N   +FETSA     IDDA   LV++I   + 
Sbjct: 118 DLEQQRQVTTEEGRN--------LAREFN-CPFFETSAALRFYIDDAFHGLVREIRRKES 168

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQ 518
           +++ +G  G GKT++I+R+++  F P +R T+     L    ++     + + + D +G 
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE---ELHSKEYEVAGVKVTIDILDTSGS 57

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
             F  M ++  +      +V+ V    +F+ V + ++++   + + +   +P V++ NK 
Sbjct: 58  YSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEI---LEVKEDKFVPIVVVGNKI 114

Query: 579 DQPKEGIANNPAKIDEFIKEHNF-SGWFETSAKDNINIDDAAKTLVQK 625
           D   E      A       E ++ +G+ E SAKDN N+ +  K L+Q+
Sbjct: 115 DSLAER--QVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 41/190 (21%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPH---------YRATIGVDFALKVLSWDHETIIRLQ 511
           ++V+G+   GKT ++  Y    F P          Y A + VD             + L 
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAF-PEDYVPTVFENYSADVEVD----------GKPVELG 49

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIP 570
           LWD AGQE +  +  + Y +     I F V   A+F+ V  KW  ++  K   P+   +P
Sbjct: 50  LWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV--KHFCPN---VP 104

Query: 571 CVLLANKCDQPKEGIANNPAKIDEFI-----------KEHNFSGWFETSAKDNINIDD-- 617
            +L+  K D   +          +             K      + E SA     + +  
Sbjct: 105 IILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Query: 618 --AAKTLVQK 625
             A +  + K
Sbjct: 165 EEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 26/186 (13%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI V+G    GK+S+  ++V   F   Y  TI   F+ K++++  +    L++ D AGQ+
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIITYKGQEYH-LEIVDTAGQD 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  + + Y     G  +V+ VT   +F+ V + + + LD          +P VL+ NK 
Sbjct: 61  EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKES----VPIVLVGNKS 116

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           D         +EG      K+ E       + + E+SAK+N N+++A + L+++I   +K
Sbjct: 117 DLHMERQVSAEEGK-----KLAESWG----AAFLESSAKENENVEEAFELLIEEI---EK 164

Query: 632 VQANGD 637
           V+    
Sbjct: 165 VENPLP 170

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 15/167 (8%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++V+G+   GKTS++  +   +F   Y  T+  ++   +        + L LWD AGQE
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFV--DGLAVELSLWDTAGQE 59

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            F  +  + Y +     + F V    + + V  KW  ++           +  VL+A KC
Sbjct: 60  EFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI-----RHHCPGVKLVLVALKC 114

Query: 579 D-QPKEGIANNPAKIDEF------IKEHNFSGWFETSAKDNINIDDA 618
           D +      +       +       K  N   + E SAK N  +++A
Sbjct: 115 DLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEA 161

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
           KI+++G+   GKT++++ +    F  +Y  T+   F     S++ +   I L LWD +G 
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV---FENYTASFEVDKQRIELSLWDTSGS 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWK 554
             + N+  + Y ++    I FD++R  T D+VL KWK
Sbjct: 60  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 96

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+ G GKT ++  Y    F   Y  T+  ++   +   + + II L LWD AGQE
Sbjct: 5   KIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGK-IIELALWDTAGQE 63

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGN----PIPCVLL 574
            +  +  + Y +     I + V    + D V  KW          P+ N      P VL+
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKW---------YPEVNHFCPGTPIVLV 114

Query: 575 ANKCD--QPKEGIANNPAKIDEFI---------KEHNFSGWFETSAKDNINIDDAAKTLV 623
             K D  + K  ++   A+  E +         K      + E SAK   N+D+     +
Sbjct: 115 GLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Query: 624 QKILENDKVQA 634
              L      A
Sbjct: 175 NVALSKSGRAA 185

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 30/177 (16%)

Query: 460 KILVIGELGAGKTSIIKRYVHQF------------FSPHYRATIGVDFALKVLSWDHETI 507
           KI+VIG +GAGKT+ ++    +                    T+ +DF    L  D    
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG-- 69

Query: 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGN 567
             + L+   GQERF  M  +  + AVGA ++ D +R  TF A  +    L ++      N
Sbjct: 70  --VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAE-EIIDFLTSR------N 120

Query: 568 PIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS-GWFETSAKDNINIDDAAKTLV 623
           PIP V+  NK D      A  P KI E +K    S    E  A +    + A   L 
Sbjct: 121 PIPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEIDATEG---EGARDQLD 171

Length = 187

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +++G+   GKTS+I  Y    +   Y  T   +F++ VL       +RLQL D AGQ+
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLV--DGKPVRLQLCDTAGQD 59

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPD---GNP-IPCVLL 574
            F  +  + Y +     + F V   ++F  +  KW         +P+    NP  P +L+
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKW---------IPEIRKHNPKAPIILV 110

Query: 575 ANKCDQ 580
             + D 
Sbjct: 111 GTQADL 116

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
           KI+V+G+   GKT+++  +    F  +Y  T+   F     S++ +T  I L LWD +G 
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDTSGS 63

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLD 558
             + N+  + Y ++    I FD++R  T D+VL KWK ++ 
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 104

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI V+G  G GK+++  R++ + F   Y   +   ++ +V + D E +  L++ D  GQ+
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQV-TIDGEQV-SLEIQDTPGQQ 58

Query: 520 RFG---NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           +     ++ R   + A G  +V+ +T  ++FD V +  Q +  ++   DG  IP +L+ N
Sbjct: 59  QNEDPESLER-SLRWADGFVLVYSITDRSSFDVVSQLLQLIR-EIKKRDGE-IPVILVGN 115

Query: 577 KCDQP 581
           K D  
Sbjct: 116 KADLL 120

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 39/215 (18%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
           K++++G+   GKTS++  +    F   Y  T+   F   V     +   ++L LWD AGQ
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV---FENYVTDCRVDGKPVQLALWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANK 577
           E +  +  + Y +A    I F +    + + V  KW +  + +   P    +P +L+  K
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIE--EVRRYCP---NVPVILVGLK 114

Query: 578 CDQPKEGIANNPAKIDEFIKEHN---------FSGWFETSAKDNINIDDAAKTLVQKILE 628
            D  +E +A      DEF+                + E SA     +DD        + E
Sbjct: 115 KDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDD--------VFE 166

Query: 629 NDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
                      AT  A+  L R S + + G NC  
Sbjct: 167 ----------AATRAAL--LVRKSGKEEPGANCCI 189

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 31/175 (17%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD---HETIIR----LQ 511
            ++ V+G  G GKT+I+++++ Q F   Y  T         +      ++  I     +Q
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFI-VFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-I 569
            +     + + +  R        AFI V+D+    +F  V   +Q +    T P GN   
Sbjct: 61  RYPGTAGQEWMD-PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILE--TRPAGNKEP 117

Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS---------GWFETSAKDNINI 615
           P V++ NK DQ +            F   H  S         G+ E SAK N +I
Sbjct: 118 PIVVVGNKRDQQRH----------RFAPRHVLSVLVRKSWKCGYLECSAKYNWHI 162

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 23/147 (15%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSW----DHETIIRLQLWDI 515
           K+LV+G+ G GK+S++          +   T+G    ++  ++      E    ++LWD+
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 516 AGQ----ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG----- 566
            G     E   +   V+Y +  G   V D+T   +   + +W  +   + T P G     
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 567 ----------NPIPCVLLANKCDQPKE 583
                     NP+P +++  K DQ  E
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 21/146 (14%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSW------------DHETI 507
           ++LV+G+ G GK+S++   V          TIG    +K +++            D E  
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTL---- 563
             ++LWD++G ER+ +   ++Y +  G   V D+++  T  ++ KW  ++ A  T     
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 564 ----PDGNPIPCVLLANKCD-QPKEG 584
               P G P+P +++ NK D  PKEG
Sbjct: 143 GSGGPGGLPVPYIVIGNKADIAPKEG 168

Length = 334

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 25/133 (18%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYR--------ATIGVDFALKVLSWDHETI----I 508
           +L++G   AGKT+ +++     FS +Y+         T+G++           TI     
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIG---------TIEVGKA 51

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           RL  WD+ GQE   ++   YY E+ G   V D T    F+     K   +  +       
Sbjct: 52  RLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNES---KSAFEKVINNEALEG 108

Query: 569 IPCVLLANKCDQP 581
           +P ++LANK D P
Sbjct: 109 VPLLVLANKQDLP 121

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 16/172 (9%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            +IL++G   AGKT+I+ +            TIG  F ++ +++ +   ++  +WD+ GQ
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTYKN---VKFTVWDVGGQ 68

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E    + R Y+       ++F V  +A  D + + K++L A +   +    P ++LANK 
Sbjct: 69  ESLRPLWRNYFPNTDA--VIF-VVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG--W--FETSAKDNINIDDAAKTLVQKI 626
           D P    A + A+I E +  H      W     SA     +D+    L   I
Sbjct: 126 DLPG---AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 28/174 (16%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
           +IL++G  GAGKT+I+           YR  +G V   +  + ++ ET+    ++ Q+WD
Sbjct: 1   RILILGLDGAGKTTIL-----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWD 49

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           + GQ       R YY        V D   +   D +   K +L A +   +      ++ 
Sbjct: 50  LGGQTSIRPYWRCYYSNTDAIIYVVD---STDRDRLGISKSELHAMLEEEELKDAVLLVF 106

Query: 575 ANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLV 623
           ANK D P    A + A++ E      +K+  +   F+TSA     +D+    LV
Sbjct: 107 ANKQDMPG---ALSEAEVAEKLGLSELKDRTWQ-IFKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+   GKT+++  +    +   Y  T+  ++        H   I L +WD +G  
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHR--IELNMWDTSGSS 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWK 554
            + N+  + Y ++    I FD++R  T D+VL KW+
Sbjct: 61  YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQ 96

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 20/173 (11%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           ILV+G   +GKT+II +       S +   T+G  F ++      +  +    +D++GQ 
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFK---KGNLSFTAFDMSGQG 56

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD--GNPIPCVLLANK 577
           ++  +   YYK   G   V D +           K +L+  +  PD     IP +  ANK
Sbjct: 57  KYRGLWEHYYKNIQGIIFVIDSSDRLRMVVA---KDELELLLNHPDIKHRRIPILFYANK 113

Query: 578 CDQPKEGIANNPAKID-----EFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
            D P    A    KI      E IK+  +   F +SA     +D+    L  +
Sbjct: 114 MDLPD---ALTAVKITQLLCLENIKDKPWH-IFASSALTGEGLDEGVDWLQAQ 162

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 21/148 (14%)

Query: 459 YKILVIGELGAGKTSIIKRYV--HQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           YK++++G   AGKT+I+ +++        H   TIG +  ++ + + +   IR  +WDI 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVV---HTSPTIGSN--VEEIVYKN---IRFLMWDIG 67

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQE   +    YY       +V D T           K++L   +   D      ++LAN
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLT---KEELYKMLAHEDLRKAVLLVLAN 124

Query: 577 KCDQPKEGIANNPAKIDEF-----IKEH 599
           K D      A  PA+I E      I++H
Sbjct: 125 KQDLKG---AMTPAEISESLGLTSIRDH 149

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 17/178 (9%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K + +G+   GKT ++  Y    F   Y  T+  +F+  V+       + L LWD AGQE
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAGQE 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y+ A    + F +   A+++ VL KW  +L  +   P    +P VL+  K 
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPEL--RHYAPG---VPIVLVGTKL 115

Query: 579 D--QPKEGIANNPAKI-------DEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D    K+  A++P  +       +E  K+   + + E S+K   N+       ++ +L
Sbjct: 116 DLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 26/165 (15%)

Query: 448 YSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHET 506
           +SK+   +E   +IL++G   AGKT+I+           Y+  +G     +  + ++ ET
Sbjct: 5   FSKLFGNKEM--RILMVGLDAAGKTTIL-----------YKLKLGESVTTIPTIGFNVET 51

Query: 507 I----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVT 562
           +    I   +WD+ GQ++   + R YY    G   V D   +   D + + +++L   + 
Sbjct: 52  VTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVD---SNDRDRIDEAREELHRMLN 108

Query: 563 LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--SGWF 605
             +      ++ ANK D P    A   A+I E +  H+     W+
Sbjct: 109 EDELRDAVILVFANKQDLPD---AMKAAEITEKLGLHSIRDRNWY 150

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y +  F   Y  T+   +A+ V     + +  L L+D AGQE
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL--LGLYDTAGQE 59

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y       I F V   A+F  V  +W  +L  K   P+   +P +L+  + 
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL--KEYAPN---VPYLLIGTQI 114

Query: 579 D 579
           D
Sbjct: 115 D 115

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 39/216 (18%), Positives = 63/216 (29%), Gaps = 23/216 (10%)

Query: 14   TKSSRKSVKYSTLPGASSLAVISNEKTNLKFGSVFSLSSQSDQSEKSPRKTSISSPEEKQ 73
               S+K+          S      +       S  S S Q D  E+  +    S    K 
Sbjct: 1186 ADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKS 1245

Query: 74   KRRRFSFLSDKTEKLARKLSISSEKLDKKSAKQSTEKVNEKPVKKSSIEQVNERGVDVEF 133
            K+   S  S+  ++ +        K      + S  + +  P  K    +          
Sbjct: 1246 KKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGE--------SN 1297

Query: 134  STSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEKPVKKSSIEQVNERGVDVEFSTSAPL 193
              S P   T  K        L  L   KK + K    KK               S +   
Sbjct: 1298 GGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKK---------------SKTRVK 1342

Query: 194  ESTTSKKSPLKFKLLKKLSFSKKPKTKEESSEDTMD 229
            +++ S+ S L  +  KK S S      +   +D+ D
Sbjct: 1343 QASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSED 1378

Length = 1388

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 22/99 (22%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++  GKT++++      +   Y  T+  ++   + + +    + L LWD +G  
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR--VELSLWDTSGSP 72

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
            + N+  + Y ++    + FD++R   FD+ L KW+ ++
Sbjct: 73  YYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI 111

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 22/95 (23%)

Query: 460 KILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDFALKVLSWDHETI-----IRLQ 511
           K+L++G  G+GK+S+            +    ATI V         +   +     + L 
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDV---------EQSHVRFLGNLTLN 51

Query: 512 LWDIAGQERFGNMTRVYYKEA----VGAFI-VFDV 541
           LWD  GQ+ F        KE     VG  I VFDV
Sbjct: 52  LWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDV 86

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++  V+  D + +  L LWD AGQE
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y +     I F +   A+F+ V  KW  ++      P+    P +L+  K 
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PN---TPIILVGTKL 115

Query: 579 D 579
           D
Sbjct: 116 D 116

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 16/127 (12%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFF-SPHYRAT---IGVDFALKVLSWDHE--TIIRLQL 512
           Y+++++G+ G GK+S+     + F    +  +     G D   + +S D E  T++    
Sbjct: 1   YRVVLLGDSGVGKSSL----ANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDH 56

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           W+   QE    +     +      IV+ VT  ++F+   + +  L       D   IP +
Sbjct: 57  WE---QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAED---IPII 110

Query: 573 LLANKCD 579
           L+ NK D
Sbjct: 111 LVGNKSD 117

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 20/203 (9%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++ +  + D  T+  L LWD AGQE
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTV-SLNLWDTAGQE 62

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y +     I F +   ++++ V  KW  ++      P+   +P +L+  K 
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PN---VPILLVGTKK 117

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDS 638
           D     + N+   + + +KE   +     + +    +  A +    K LE   +  +G  
Sbjct: 118 D-----LRNDADTLKK-LKEQGQA---PITPQQGGAL--AKQIHAVKYLECSALNQDGVK 166

Query: 639 HATSEAVFSLNRNSQETKNGRNC 661
              +EAV ++  N    K+ ++C
Sbjct: 167 EVFAEAVRAV-LNPTPIKDTKSC 188

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	663
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
KOG0394|consensus	210		100.0
KOG0098|consensus	216		100.0
KOG0080|consensus	209		100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0079|consensus	198		100.0
KOG0087|consensus	222		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0093|consensus	193		100.0
KOG0091|consensus	213		99.98
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.98
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
KOG0086|consensus	214		99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
KOG0095|consensus	213		99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
KOG0088|consensus	218		99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
KOG0081|consensus	219		99.96
PLN03118	211	Rab family protein; Provisional	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
KOG0097|consensus	215		99.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
PLN03108	210	Rab family protein; Provisional	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
KOG0083|consensus	192		99.95
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.95
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.95
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.95
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.95
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.94
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
KOG0395|consensus	196		99.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.94
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.94
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.94
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.93
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.93
PLN00223	181	ADP-ribosylation factor; Provisional	99.93
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.93
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.93
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.93
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.93
KOG0393|consensus	198		99.93
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.92
PTZ00133	182	ADP-ribosylation factor; Provisional	99.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.92
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.92
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.92
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.92
KOG4252|consensus	246		99.91
PTZ00099	176	rab6; Provisional	99.91
PLN00023	334	GTP-binding protein; Provisional	99.91
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.91
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.9
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.9
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.9
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.9
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.9
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.9
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.89
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.89
COG1100	219	GTPase SAR1 and related small G proteins [General	99.88
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.88
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.88
KOG4423|consensus	229		99.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.87
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.87
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.87
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.86
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.86
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.86
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.84
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.84
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.84
PRK04213	201	GTP-binding protein; Provisional	99.83
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.82
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.82
KOG0073|consensus	185		99.81
cd00881	189	GTP_translation_factor GTP translation factor fami	99.8
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.79
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.78
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.78
KOG1673|consensus	205		99.78
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.78
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.77
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.77
KOG0096|consensus	216		99.77
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.77
PRK03003	472	GTP-binding protein Der; Reviewed	99.77
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.77
KOG0070|consensus	181		99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.76
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.76
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.76
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.75
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.75
PRK05433	600	GTP-binding protein LepA; Provisional	99.74
PRK15494	339	era GTPase Era; Provisional	99.74
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.73
KOG0075|consensus	186		99.73
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.73
PRK05306	787	infB translation initiation factor IF-2; Validated	99.73
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.72
CHL00189	742	infB translation initiation factor 2; Provisional	99.72
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.72
PRK00093	435	GTP-binding protein Der; Reviewed	99.72
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.71
PRK11058	426	GTPase HflX; Provisional	99.71
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.71
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.71
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.71
PRK12297	424	obgE GTPase CgtA; Reviewed	99.71
PRK00093	435	GTP-binding protein Der; Reviewed	99.69
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.69
PRK00089	292	era GTPase Era; Reviewed	99.69
KOG3883|consensus	198		99.68
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.68
PRK10218	607	GTP-binding protein; Provisional	99.68
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.68
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.68
KOG0071|consensus	180		99.68
PRK12296	500	obgE GTPase CgtA; Reviewed	99.67
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.66
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.66
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.65
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.65
KOG0462|consensus	650		99.65
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.65
PRK12317	425	elongation factor 1-alpha; Reviewed	99.65
PRK12298	390	obgE GTPase CgtA; Reviewed	99.64
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.64
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.64
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.63
KOG0076|consensus	197		99.63
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.62
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.62
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.6
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.59
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.59
PLN00043	447	elongation factor 1-alpha; Provisional	99.58
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.58
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.57
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.57
PRK04004	586	translation initiation factor IF-2; Validated	99.56
KOG0074|consensus	185		99.55
PRK12736	394	elongation factor Tu; Reviewed	99.54
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.53
PRK12735	396	elongation factor Tu; Reviewed	99.53
KOG1707|consensus	625		99.52
PRK13351	687	elongation factor G; Reviewed	99.51
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.51
COG1160	444	Predicted GTPases [General function prediction onl	99.5
COG1159	298	Era GTPase [General function prediction only]	99.48
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.48
CHL00071	409	tufA elongation factor Tu	99.48
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.47
PLN03126	478	Elongation factor Tu; Provisional	99.47
PTZ00141	446	elongation factor 1- alpha; Provisional	99.47
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.47
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.47
COG1160	444	Predicted GTPases [General function prediction onl	99.45
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.45
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.44
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.44
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.43
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.42
KOG3905|consensus	473		99.42
PRK00049	396	elongation factor Tu; Reviewed	99.42
KOG0072|consensus	182		99.41
PLN03127	447	Elongation factor Tu; Provisional	99.41
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.41
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.39
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.38
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.37
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.35
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.34
KOG1423|consensus	379		99.33
COG0486	454	ThdF Predicted GTPase [General function prediction	99.33
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.32
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.32
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.31
PRK12740	668	elongation factor G; Reviewed	99.31
PRK12739	691	elongation factor G; Reviewed	99.31
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.29
KOG1145|consensus	683		99.27
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.27
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.26
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.25
PRK00007	693	elongation factor G; Reviewed	99.24
PRK09602	396	translation-associated GTPase; Reviewed	99.22
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.22
KOG1489|consensus	366		99.22
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.21
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.19
COG0218	200	Predicted GTPase [General function prediction only	99.19
KOG0077|consensus	193		99.18
COG2262	411	HflX GTPases [General function prediction only]	99.18
PRK07560	731	elongation factor EF-2; Reviewed	99.16
KOG0458|consensus	603		99.14
PRK14845	1049	translation initiation factor IF-2; Provisional	99.12
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.11
COG1084	346	Predicted GTPase [General function prediction only	99.1
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.08
COG0536	369	Obg Predicted GTPase [General function prediction	99.08
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.07
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.05
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.03
COG1163	365	DRG Predicted GTPase [General function prediction	99.03
PTZ00416	836	elongation factor 2; Provisional	99.01
PRK13768	253	GTPase; Provisional	99.01
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.0
PRK09866	741	hypothetical protein; Provisional	98.98
COG3596	296	Predicted GTPase [General function prediction only	98.97
KOG0090|consensus	238		98.96
KOG1191|consensus	531		98.96
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.95
KOG1707|consensus	625		98.93
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.92
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.88
KOG0705|consensus	749		98.86
KOG0082|consensus	354		98.83
KOG1532|consensus	366		98.83
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.8
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.79
KOG1144|consensus	1064		98.78
PTZ00258	390	GTP-binding protein; Provisional	98.75
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.73
KOG0461|consensus	522		98.72
KOG1490|consensus	620		98.68
KOG3886|consensus	295		98.66
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.66
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.65
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.64
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.64
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.64
KOG0468|consensus	971		98.57
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.56
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.56
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.54
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.53
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.48
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.48
PRK09601	364	GTP-binding protein YchF; Reviewed	98.44
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.43
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.42
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.39
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.36
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.36
PRK12289	352	GTPase RsgA; Reviewed	98.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.29
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.27
PRK00098	298	GTPase RsgA; Reviewed	98.26
KOG1486|consensus	364		98.26
PRK12288	347	GTPase RsgA; Reviewed	98.25
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.23
KOG0467|consensus	887		98.23
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.22
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.18
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.14
KOG3887|consensus	347		98.14
KOG0099|consensus	379		98.11
KOG0464|consensus	753		98.06
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.04
KOG0460|consensus	449		98.01
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.94
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.93
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.91
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.89
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.86
KOG0410|consensus	410		97.85
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.82
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.73
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.73
KOG1547|consensus	336		97.7
KOG2655|consensus	366		97.7
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.69
KOG0085|consensus	359		97.67
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.67
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.65
KOG1954|consensus	532		97.61
KOG1143|consensus	591		97.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.56
PRK13796	365	GTPase YqeH; Provisional	97.55
KOG0466|consensus	466		97.52
KOG0465|consensus	721		97.5
KOG2486|consensus	320		97.49
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.47
KOG0459|consensus	501		97.41
PRK10416	318	signal recognition particle-docking protein FtsY;	97.38
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.38
KOG0463|consensus	641		97.37
KOG1487|consensus	358		97.36
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.34
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.34
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.33
PRK14974	336	cell division protein FtsY; Provisional	97.32
KOG0469|consensus	842		97.31
PRK01889	356	GTPase RsgA; Reviewed	97.24
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.22
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.21
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.16
cd03112	158	CobW_like The function of this protein family is u	97.16
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.13
KOG0448|consensus	749		97.12
KOG4273|consensus	418		97.12
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.09
KOG0447|consensus	980		97.02
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.01
cd03110	179	Fer4_NifH_child This protein family's function is	96.92
PRK13695	174	putative NTPase; Provisional	96.91
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.89
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.88
COG1161	322	Predicted GTPases [General function prediction onl	96.86
KOG1491|consensus	391		96.79
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.74
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.72
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.63
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.6
cd03114	148	ArgK-like The function of this protein family is u	96.56
PRK12288	347	GTPase RsgA; Reviewed	96.53
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.51
KOG3859|consensus	406		96.48
PRK10867	433	signal recognition particle protein; Provisional	96.46
TIGR00959	428	ffh signal recognition particle protein. This mode	96.41
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.35
PRK13796	365	GTPase YqeH; Provisional	96.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.24
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	96.16
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.09
PRK12289	352	GTPase RsgA; Reviewed	96.05
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.05
COG1162	301	Predicted GTPases [General function prediction onl	96.02
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.99
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.97
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	95.92
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.91
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.9
COG3523	1188	IcmF Type VI protein secretion system component Va	95.89
COG1162	301	Predicted GTPases [General function prediction onl	95.85
cd02036	179	MinD Bacterial cell division requires the formatio	95.78
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	95.74
PRK00098	298	GTPase RsgA; Reviewed	95.71
cd03111	106	CpaE_like This protein family consists of proteins	95.59
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.59
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.55
PF05729	166	NACHT: NACHT domain	95.43
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	95.3
PF13173	128	AAA_14: AAA domain	95.2
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.11
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.08
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.04
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.02
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.91
COG0523	323	Putative GTPases (G3E family) [General function pr	94.83
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	94.69
PHA02518	211	ParA-like protein; Provisional	94.4
PRK04195	482	replication factor C large subunit; Provisional	94.38
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	94.29
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.22
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.21
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	94.02
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	93.9
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	93.89
KOG4181|consensus	491		93.83
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	93.83
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	93.81
KOG1533|consensus	290		93.77
KOG1424|consensus	562		93.58
KOG0780|consensus	483		93.47
smart00382	148	AAA ATPases associated with a variety of cellular	93.45
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	93.44
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	93.42
KOG1534|consensus	273		93.36
PRK08118	167	topology modulation protein; Reviewed	93.35
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	93.31
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	93.3
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.3
PRK07261	171	topology modulation protein; Provisional	93.24
PRK08099	399	bifunctional DNA-binding transcriptional repressor	93.09
cd02032	267	Bchl_like This family of proteins contains bchL an	92.93
PF00005	137	ABC_tran: ABC transporter This structure is on hol	92.91
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.88
KOG2485|consensus	335		92.83
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	92.82
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	92.74
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	92.73
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	92.59
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	92.57
PRK10646	153	ADP-binding protein; Provisional	92.53
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	92.36
PF00004	132	AAA: ATPase family associated with various cellula	92.36
PRK08727	233	hypothetical protein; Validated	92.33
KOG1424|consensus	562		92.3
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	92.25
COG0802	149	Predicted ATPase or kinase [General function predi	92.18
cd02117	212	NifH_like This family contains the NifH (iron prot	91.84
PRK06217	183	hypothetical protein; Validated	91.83
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	91.8
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	91.73
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	91.72
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	91.63
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	91.61
PRK13851	344	type IV secretion system protein VirB11; Provision	91.38
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	91.31
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	91.3
PLN03025	319	replication factor C subunit; Provisional	91.23
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	91.21
PRK01889	356	GTPase RsgA; Reviewed	91.21
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	91.2
PRK03839	180	putative kinase; Provisional	91.17
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	91.13
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	91.11
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	91.01
PF13555	62	AAA_29: P-loop containing region of AAA domain	91.0
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	91.0
PRK14086	617	dnaA chromosomal replication initiation protein; P	91.0
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	90.99
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	90.95
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	90.91
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	90.87
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	90.79
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	90.75
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	90.72
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	90.67
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	90.63
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	90.54
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	90.48
KOG3929|consensus	363		90.43
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	90.41
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	90.39

>KOG0084|consensus

Probab=100.00  E-value=6.3e-39  Score=314.86  Aligned_cols=202  Identities=33%  Similarity=0.635  Sum_probs=178.9

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ...++.|||+|||+.|||||+|+.||.++.|.+.|..|+|+||..+++.++++ .++||||||+||+||+.+...||++|
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk-~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGK-TIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecce-EEEEEeeeccccHHHhhhhHhhccCC
Confidence            45789999999999999999999999999999999999999999999999998 78999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      +|+|||||+|+..||+++..|+.++..+.    ..++|.||||||+|+.+.+ .+..++++.|+..++...|+|+||+.+
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~----~~~v~~lLVGNK~Dl~~~~-~v~~~~a~~fa~~~~~~~f~ETSAK~~  157 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYA----SENVPKLLVGNKCDLTEKR-VVSTEEAQEFADELGIPIFLETSAKDS  157 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhc----cCCCCeEEEeeccccHhhe-ecCHHHHHHHHHhcCCcceeecccCCc
Confidence            99999999999999999999999999764    4669999999999999888 899999999999999744999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094         613 INIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC  663 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C  663 (663)
                      .||++.|..|+..+..++........  ....++.+.. .+..+..+.|||
T Consensus       158 ~NVe~~F~~la~~lk~~~~~~~~~~~--~~~~~~ql~~-~p~~~~~~~~C~  205 (205)
T KOG0084|consen  158 TNVEDAFLTLAKELKQRKGLHVKWST--ASLESVQLKG-TPVKKSNGGCCE  205 (205)
T ss_pred             cCHHHHHHHHHHHHHHhcccCCCCCc--CCCCceeeCC-CCcccccCCCCC
Confidence            99999999999999988876554332  3445566666 344445555655

>KOG0078|consensus

Probab=100.00  E-value=3.7e-35  Score=290.72  Aligned_cols=172  Identities=34%  Similarity=0.700  Sum_probs=163.4

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ++++.+||+|||++|||||+|+.+|..+.|...+..|+|+||..+++.+++. .+.|+||||+||++|+.+...||+.|+
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~-~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK-KIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe-EEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            6788999999999999999999999999999999999999999999999997 899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|||||+++..||+++..|+..+.+|.    ..++++||||||+|+...| .|..+.++++|..+|. .|+||||++|.
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a----~~~v~~~LvGNK~D~~~~R-~V~~e~ge~lA~e~G~-~F~EtSAk~~~  160 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHA----SDDVVKILVGNKCDLEEKR-QVSKERGEALAREYGI-KFFETSAKTNF  160 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhC----CCCCcEEEeeccccccccc-cccHHHHHHHHHHhCC-eEEEccccCCC
Confidence            9999999999999999999999999763    3589999999999999877 9999999999999995 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy4094         614 NIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~  632 (663)
                      ||+++|..|++.++.+...
T Consensus       161 NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  161 NIEEAFLSLARDILQKLED  179 (207)
T ss_pred             CHHHHHHHHHHHHHhhcch
Confidence            9999999999999976554

>KOG0092|consensus

Probab=100.00  E-value=1.2e-35  Score=290.82  Aligned_cols=197  Identities=26%  Similarity=0.529  Sum_probs=174.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|||+.+||||||+.||+.+.|.+...+|||.-|..+++.+++. .++|.||||+||++|..+.++|||+|+++|
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~-~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDN-TIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCc-EEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4589999999999999999999999999999999999999999999987 899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||+++.+||..++.|+++|.+..    .+++.|.|||||+||.+.| .|..+++..+|...|+ .|||+||++|.||+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~----~~~~vialvGNK~DL~~~R-~V~~~ea~~yAe~~gl-l~~ETSAKTg~Nv~  156 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQA----SPNIVIALVGNKADLLERR-EVEFEEAQAYAESQGL-LFFETSAKTGENVN  156 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhC----CCCeEEEEecchhhhhhcc-cccHHHHHHHHHhcCC-EEEEEecccccCHH
Confidence            9999999999999999999999753    3678888999999998877 8999999999999996 69999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094         617 DAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC  663 (663)
Q Consensus       617 ELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C  663 (663)
                      ++|..|++.++.........  .+++..+.+++.+++.....+|| |
T Consensus       157 ~if~~Ia~~lp~~~~~~~~~--~~~~~~g~~l~~~~~~~~~~~~C-~  200 (200)
T KOG0092|consen  157 EIFQAIAEKLPCSDPQERQG--LPNRRQGVDLNSNQEPARPSGCC-A  200 (200)
T ss_pred             HHHHHHHHhccCcccccccc--ccccccceecccCCCCcCcCCcC-C
Confidence            99999999999877654432  23444778888765344444444 5

>KOG0094|consensus

Probab=100.00  E-value=3.2e-35  Score=288.71  Aligned_cols=171  Identities=31%  Similarity=0.521  Sum_probs=159.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||++||+.+|||||||.||+-+.|+..|.+|||+||..+++.+.+. .++|++|||+|||+|+.+...|+|++.++|
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~-~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc-EEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            4499999999999999999999999999999999999999999999987 899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++|..||++...|++.++.   .++..++-|+|||||.||.+.+ ++..+++...|++++. .|+++||+.|+||.
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~---e~gs~~viI~LVGnKtDL~dkr-qvs~eEg~~kAkel~a-~f~etsak~g~NVk  174 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRR---ERGSDDVIIFLVGNKTDLSDKR-QVSIEEGERKAKELNA-EFIETSAKAGENVK  174 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHh---ccCCCceEEEEEcccccccchh-hhhHHHHHHHHHHhCc-EEEEecccCCCCHH
Confidence            99999999999999999999985   3344468889999999999987 8999999999999996 79999999999999


Q ss_pred             HHHHHHHHHHHhhhhhh
Q psy4094         617 DAAKTLVQKILENDKVQ  633 (663)
Q Consensus       617 ELFe~IIr~Ile~~k~~  633 (663)
                      ++|..|+..+.......
T Consensus       175 ~lFrrIaa~l~~~~~~~  191 (221)
T KOG0094|consen  175 QLFRRIAAALPGMEVLE  191 (221)
T ss_pred             HHHHHHHHhccCccccc
Confidence            99999999988876643

>KOG0394|consensus

Probab=100.00  E-value=5e-35  Score=285.11  Aligned_cols=203  Identities=31%  Similarity=0.576  Sum_probs=175.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|++||||||||++|+...|...|..|||.||..+.+.+++. .+.|+||||+||++|+++.-.|||++|+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~-~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR-SVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe-EEEEEEEecccHHHhhhcccceecCCce
Confidence            345699999999999999999999999999999999999999999999976 8999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      +++|||++++.||+++..|+.++..+..-......|+||+|||+|+... .+.++...+++||+..|.++|||+|||.+.
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            9999999999999999999999998765555567899999999999873 358999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh-hhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094         614 NIDDAAKTLVQKILENDKV-QANGDSHATSEAVFSLNRNSQETKNGRNCAC  663 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~-~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C  663 (663)
                      ||++.|+.+++.++..... ....   ..-.+.+.+....  ....+||.|
T Consensus       165 NV~~AFe~ia~~aL~~E~~~~~~~---~~~~d~i~~~~~~--~~~~~~c~c  210 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDREIAEL---ADYSDQIVLSTKA--NNQSSGCEC  210 (210)
T ss_pred             cHHHHHHHHHHHHHhccchhhhhh---hhcCccccccccc--ccCCCCCCC
Confidence            9999999999999988764 1111   1223445555444  222336777

>KOG0098|consensus

Probab=100.00  E-value=2.5e-34  Score=280.72  Aligned_cols=173  Identities=32%  Similarity=0.606  Sum_probs=163.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +.+.||++++|+.|||||+|+.||.+..|.+.+..|+|++|..+.+.+++. .++|+||||+||+.|+++...||+.|.+
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k-~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGK-QIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCc-eEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            457799999999999999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||||++++++|..+..|+.+++++    ..+++.|+|+|||+||...| .|..+++++||+++|+ .|+|+||++++|
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~----~~~NmvImLiGNKsDL~~rR-~Vs~EEGeaFA~ehgL-ifmETSakt~~~  155 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQH----SNENMVIMLIGNKSDLEARR-EVSKEEGEAFAREHGL-IFMETSAKTAEN  155 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHh----cCCCcEEEEEcchhhhhccc-cccHHHHHHHHHHcCc-eeehhhhhhhhh
Confidence            99999999999999999999999976    35789999999999998877 9999999999999997 599999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~~  634 (663)
                      |+|+|..+...|+..-+...
T Consensus       156 VEEaF~nta~~Iy~~~q~g~  175 (216)
T KOG0098|consen  156 VEEAFINTAKEIYRKIQDGV  175 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999999998766433

>KOG0080|consensus

Probab=100.00  E-value=5.6e-34  Score=273.02  Aligned_cols=199  Identities=35%  Similarity=0.572  Sum_probs=173.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +...|||+|||++|||||+|+.+|+.+.|++....|||+||..+.+.+++. .++|.||||+||++|+.+...||+.|.+
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~-~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGK-RLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCc-eEEEEEEeccchHhhhccCHhHhccCce
Confidence            456799999999999999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++.+++|.++..|+.+|..++.   .+++..||||||+|...+| .|..+++..||+.+++ -|+||||++.+|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Yst---n~diikmlVgNKiDkes~R-~V~reEG~kfAr~h~~-LFiE~SAkt~~~  161 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYST---NPDIIKMLVGNKIDKESER-VVDREEGLKFARKHRC-LFIECSAKTREN  161 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcC---CccHhHhhhcccccchhcc-cccHHHHHHHHHhhCc-EEEEcchhhhcc
Confidence            9999999999999999999999998764   4668889999999987777 8999999999999997 599999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCc-cc--cCCCCCCCC
Q psy4094         615 IDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNS-QE--TKNGRNCAC  663 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~-~k--~Kkkk~C~C  663 (663)
                      |..+|+.++..|++....-+.    .++...+++..++ ..  .-.++||.|
T Consensus       162 V~~~FeelveKIi~tp~l~~~----~n~~~~~~i~~~p~~~~~~~~g~~Cs~  209 (209)
T KOG0080|consen  162 VQCCFEELVEKIIETPSLWEE----GNSSAGLDIASDPDGEASAHQGGCCSC  209 (209)
T ss_pred             HHHHHHHHHHHHhcCcchhhc----cCCccccccccCCCcccccccCCccCC
Confidence            999999999999987655442    2344555555322 12  122457767

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=6.2e-33  Score=269.04  Aligned_cols=199  Identities=62%  Similarity=1.083  Sum_probs=168.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecC-CceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      |||+|||++|||||||+++|+++.+...+.+|++.++..+.+.++ +. .+.++|||++|+++|+.++..+|+++|++|+
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il   79 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNT-VVRLQLWDIAGQERFGGMTRVYYRGAVGAII   79 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCC-EEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence            699999999999999999999999999999999999998888887 54 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+...+......++|+||||||+|+...+ .+..+++.++++.+++..|++|||++|.||++
T Consensus        80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999998865444345679999999999997544 67888999999999966899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCC
Q psy4094         618 AAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNC  661 (663)
Q Consensus       618 LFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C  661 (663)
                      +|++|++.+....+....... ......+.++... ..+.++.|
T Consensus       159 ~f~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~  200 (201)
T cd04107         159 AMRFLVKNILANDKNLQQAET-PEDGSVIDLKQTT-TKKKSKGC  200 (201)
T ss_pred             HHHHHHHHHHHhchhhHhhcC-CCcccccccccce-eccccCCC
Confidence            999999999887665444331 2333455555544 34444455

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079|consensus

Probab=100.00  E-value=5.8e-34  Score=269.99  Aligned_cols=188  Identities=32%  Similarity=0.638  Sum_probs=170.3

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .++..|+.+|||++|||||+|+.+|..+.|...|..|+|+||..+++.++|. .++|+|||++||++|+.+...||+..+
T Consensus         4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~-~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGD-RVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCc-EEEEEEeecccHHHHHHHHHHHccCCc
Confidence            4667899999999999999999999999999999999999999999999987 899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||+++.+||.++..|+++++..|     +.+|-||||||+|+++.+ .+..++++.||...|+ .+||+||+.++
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-----dsv~~vLVGNK~d~~~Rr-vV~t~dAr~~A~~mgi-e~FETSaKe~~  155 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-----DSVPKVLVGNKNDDPERR-VVDTEDARAFALQMGI-ELFETSAKENE  155 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC-----ccccceecccCCCCccce-eeehHHHHHHHHhcCc-hheehhhhhcc
Confidence            9999999999999999999999999754     468999999999998766 8999999999999996 79999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCc
Q psy4094         614 NIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNS  652 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~  652 (663)
                      |++.+|..|.++++..+.....   ...+...+.+..+.
T Consensus       156 NvE~mF~cit~qvl~~k~r~~~---~~~r~~~~~l~~n~  191 (198)
T KOG0079|consen  156 NVEAMFHCITKQVLQAKLRESV---EQQRADAVSLKDNS  191 (198)
T ss_pred             cchHHHHHHHHHHHHHHHhhcH---HHHhhcceEeccCC
Confidence            9999999999998887632221   22556777887766

>KOG0087|consensus

Probab=100.00  E-value=3.9e-33  Score=276.56  Aligned_cols=174  Identities=32%  Similarity=0.597  Sum_probs=164.2

Q ss_pred             CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094         452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE  531 (663)
Q Consensus       452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~  531 (663)
                      +...++.|||++||++|||||-|+.||..+.|..+...|+|++|..+.+.+++. .++.+||||+||++|+.+...||+.
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k-~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGK-TVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCc-EEEEeeecccchhhhccccchhhcc
Confidence            356889999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      |.++|||||++.+.+|+++..|+.+|+.|    ...+++|||||||+||...| .|..++++.++...+. .|+|+||..
T Consensus        87 AvGAllVYDITr~~Tfenv~rWL~ELRdh----ad~nivimLvGNK~DL~~lr-aV~te~~k~~Ae~~~l-~f~EtSAl~  160 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVERWLKELRDH----ADSNIVIMLVGNKSDLNHLR-AVPTEDGKAFAEKEGL-FFLETSALD  160 (222)
T ss_pred             cceeEEEEechhHHHHHHHHHHHHHHHhc----CCCCeEEEEeecchhhhhcc-ccchhhhHhHHHhcCc-eEEEecccc
Confidence            99999999999999999999999999976    34689999999999998866 8999999999999996 799999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhh
Q psy4094         612 NINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~~k~  632 (663)
                      +.||+++|..++..|+.....
T Consensus       161 ~tNVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  161 ATNVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             cccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.5e-32  Score=264.15  Aligned_cols=170  Identities=25%  Similarity=0.493  Sum_probs=156.0

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .++.+||+|||+.|||||||+.+|..+.|...+.++++.++....+.+++. .+.|+|||++|+++|+.++..|++++|+
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGR-RVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            446799999999999999999999999999889999999998888888876 7999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||||++++.+|+.+..|+.++..+.     .++|+||||||+||...+ .+..++++.+++.+++ .||+|||++|.|
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~~-~v~~~~~~~~a~~~~~-~~~e~SAk~g~~  154 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFKR-QVATEQAQAYAERNGM-TFFEVSPLCNFN  154 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhcc-CCCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence            999999999999999999999997642     469999999999998766 6889999999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKV  632 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~  632 (663)
                      |+++|++|++.++.++..
T Consensus       155 V~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         155 ITESFTELARIVLMRHGR  172 (189)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999876653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=9.5e-32  Score=265.46  Aligned_cols=168  Identities=34%  Similarity=0.616  Sum_probs=151.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +.|+|||+.|||||||+++|+.+.|...|.+|+|.+|..+.+.+++. .+.|+||||+|+++|+.++..||++||++|||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~-~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV   79 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK-KIRLQIWDTAGQERFNSITSAYYRSAKGIILV   79 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE-EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence            36999999999999999999999999999999999999999999876 79999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+...    ...++|+||||||+||...+ .+..+++.+++..+..+.||+|||++|.||+++
T Consensus        80 fDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK~DL~~~~-~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~  154 (202)
T cd04120          80 YDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDR-EISRQQGEKFAQQITGMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             EECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECccccccc-ccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence            9999999999999999988754    23569999999999997765 788889999998863357999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q psy4094         619 AKTLVQKILENDKV  632 (663)
Q Consensus       619 Fe~IIr~Ile~~k~  632 (663)
                      |.+|++.+......
T Consensus       155 F~~l~~~~~~~~~~  168 (202)
T cd04120         155 FLKLVDDILKKMPL  168 (202)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999998775443

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0093|consensus

Probab=100.00  E-value=3.6e-32  Score=257.63  Aligned_cols=175  Identities=31%  Similarity=0.632  Sum_probs=164.3

Q ss_pred             CCCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh
Q psy4094         451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK  530 (663)
Q Consensus       451 ~~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r  530 (663)
                      .+.+.++.+||+|||+..||||+|+.+|+++.|...+.+|+|++|..+++.-..+ .++++||||+|||+|+.+...||+
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~k-RiklQiwDTagqEryrtiTTayyR   92 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDK-RIKLQIWDTAGQERYRTITTAYYR   92 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeeccc-EEEEEEEecccchhhhHHHHHHhh
Confidence            4467788899999999999999999999999999999999999999999887776 799999999999999999999999


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      +++++|||||++|.+||..+..|+.+|+.+    ...++||||||||||+.++| .+..+.+++++.++|+ .|||+||+
T Consensus        93 gamgfiLmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgnKCDmd~eR-vis~e~g~~l~~~LGf-efFEtSaK  166 (193)
T KOG0093|consen   93 GAMGFILMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGNKCDMDSER-VISHERGRQLADQLGF-EFFETSAK  166 (193)
T ss_pred             ccceEEEEEecCCHHHHHHHHHHHHHheee----eccCceEEEEecccCCccce-eeeHHHHHHHHHHhCh-HHhhhccc
Confidence            999999999999999999999999999865    45789999999999999998 8999999999999996 89999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhhhh
Q psy4094         611 DNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~~k~  632 (663)
                      .+.||+.+|+.++..|.+.+..
T Consensus       167 ~NinVk~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  167 ENINVKQVFERLVDIICDKMSE  188 (193)
T ss_pred             ccccHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999887764

>KOG0091|consensus

Probab=99.98  E-value=8.5e-32  Score=258.66  Aligned_cols=204  Identities=25%  Similarity=0.513  Sum_probs=172.9

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      -..++|+++|||++-||||+|+++|..+.|.+-..+|+|+||+.+.+.+..+..++|++|||+||++|+++...||++.-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            34678999999999999999999999999999999999999999999998776899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++++|||++|+.||+.+..|+.+-..++.  ....+.++|||+|+||..+| +|..++++.+++.+|+ .|+|+||++|.
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqR-qVt~EEaEklAa~hgM-~FVETSak~g~  159 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQR-QVTAEEAEKLAASHGM-AFVETSAKNGC  159 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhc-cccHHHHHHHHHhcCc-eEEEecccCCC
Confidence            99999999999999999999998876543  23445667999999999888 9999999999999995 79999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhhhcCC------CCCCcccccccccCccccCCCCCCCC
Q psy4094         614 NIDDAAKTLVQKILENDKVQANGD------SHATSEAVFSLNRNSQETKNGRNCAC  663 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~~~~~~------~~s~~~~si~l~k~~~k~Kkkk~C~C  663 (663)
                      ||+|.|..|++.|+...+......      .-+.+.+.+..  +....+.++.|||
T Consensus       160 NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~--s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  160 NVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPR--SPSRKQPSKPCQC  213 (213)
T ss_pred             cHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCC--cccccCCCCCCCC
Confidence            999999999999988765422110      00122333333  3334666777888

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.98  E-value=3e-31  Score=257.07  Aligned_cols=166  Identities=23%  Similarity=0.408  Sum_probs=148.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+.+|+.+.|..+|.+|++.+| .+.+.+++. .+.|+||||+|+++|..++..+|+++|++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~-~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCE-EEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            4568999999999999999999999999999999998666 466777776 79999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094         536 FIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG  603 (663)
Q Consensus       536 ILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~  603 (663)
                      |||||++++.||+++ ..|+..+..++     .++|+||||||+||.+.           .+.+..+++.++|+.++++.
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  155 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT  155 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence            999999999999997 79999998753     46899999999999642           13688999999999999768


Q ss_pred             EEEEeCCCCcC-HHHHHHHHHHHHHh
Q psy4094         604 WFETSAKDNIN-IDDAAKTLVQKILE  628 (663)
Q Consensus       604 ffEtSAKtGeN-VeELFe~IIr~Ile  628 (663)
                      |+||||++|.| |+++|..+++.++.
T Consensus       156 ~~E~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         156 YIECSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             EEECCcCCCCCCHHHHHHHHHHHHhc
Confidence            99999999999 99999999997653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=1.3e-30  Score=253.15  Aligned_cols=195  Identities=32%  Similarity=0.610  Sum_probs=164.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      +..+||+|||+.|||||||+++|++..|...+.+|++.++....+.+++. .+.+.|||++|+++|+.++..++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE-RVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCE-EEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45699999999999999999999999998899999999998888888775 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+...     ...+|+||||||+|+...+ .+..+++..++..++ ..||+|||++|.||
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~-----~~~~piivVgNK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi  155 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQN-----CDDVCKVLVGNKNDDPERK-VVETEDAYKFAGQMG-ISLFETSAKENINV  155 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECccccccc-ccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence            9999999999999999999988754     2468999999999997655 567788889998888 48999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCC
Q psy4094         616 DDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNC  661 (663)
Q Consensus       616 eELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C  661 (663)
                      +++|++|++.++..+.......   .+....+....++..++++.|
T Consensus       156 ~~lf~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  198 (199)
T cd04110         156 EEMFNCITELVLRAKKDNLAKQ---QQQQQNDVVKLPKNSKRKKRC  198 (199)
T ss_pred             HHHHHHHHHHHHHhhhccCccc---ccCCccccCccchhccccccC
Confidence            9999999999988766543322   333444444444443445555

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=6e-31  Score=253.96  Aligned_cols=162  Identities=25%  Similarity=0.422  Sum_probs=145.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||+|+.+|+.+.|..+|.+|++..+ .+.+.+++. .++|+||||+|+++|+.++..+|+++|++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~-~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGN-TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   79 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCE-EEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence            6999999999999999999999999999999998766 455667765 79999999999999999999999999999999


Q ss_pred             EeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---------CCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         539 FDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---------IANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       539 yDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---------~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ||++++.||+++ ..|+..+..+.     .++|+||||||+||.+++         +.+..+++.++++.+++..|+|||
T Consensus        80 yd~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  154 (176)
T cd04133          80 FSLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS  154 (176)
T ss_pred             EEcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            999999999998 68999998642     369999999999996643         257889999999999865799999


Q ss_pred             CCCCcCHHHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Il  627 (663)
                      |++|.||+++|..+++.+.
T Consensus       155 Ak~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         155 SKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CCcccCHHHHHHHHHHHHh
Confidence            9999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0086|consensus

Probab=99.97  E-value=2.1e-31  Score=253.77  Aligned_cols=175  Identities=31%  Similarity=0.577  Sum_probs=163.8

Q ss_pred             CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094         452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE  531 (663)
Q Consensus       452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~  531 (663)
                      ...+++.||++|+|..|.|||+|+++|+.++|......|+|++|..+.+.+.+. .++|+||||+||++|+...+.||+.
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK-~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGK-TVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCc-EEEEEEeecccHHHHHHHHHHHhcc
Confidence            356889999999999999999999999999999999999999999999999987 8999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      |-+++||||++++++|+.+..|+..++..    ..+++.|||+|||.||..+| +|...++..||.+..+ -|+|+||++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~l----As~nIvviL~GnKkDL~~~R-~VtflEAs~FaqEnel-~flETSa~T  155 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTL----ASPNIVVILCGNKKDLDPER-EVTFLEASRFAQENEL-MFLETSALT  155 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhh----CCCcEEEEEeCChhhcChhh-hhhHHHHHhhhcccce-eeeeecccc
Confidence            99999999999999999999999999853    45789999999999999988 8999999999999986 599999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhhh
Q psy4094         612 NINIDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~~k~~  633 (663)
                      |+||+|.|-.+++.|+.+-...
T Consensus       156 GeNVEEaFl~c~~tIl~kIE~G  177 (214)
T KOG0086|consen  156 GENVEEAFLKCARTILNKIESG  177 (214)
T ss_pred             cccHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999998765543

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=2.3e-30  Score=255.35  Aligned_cols=201  Identities=31%  Similarity=0.574  Sum_probs=167.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++.++..+.+.+.++..+.|+|||++|+++|..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999999988999999999998888854447899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+....   ....+|+||||||+|+...+ .+..+++.++++.++ +.|++|||++|.||++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~---~~~~~~iilvgNK~Dl~~~~-~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHI---QPHRPVFILVGHKCDLESQR-QVTREEAEKLAKDLG-MKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEcccccccc-ccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHH
Confidence            999999999999999999988643   22457899999999998755 678888999999988 5899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhh--------cCCCCCCcccccccccCcc-ccCCCCCCCC
Q psy4094         618 AAKTLVQKILENDKVQA--------NGDSHATSEAVFSLNRNSQ-ETKNGRNCAC  663 (663)
Q Consensus       618 LFe~IIr~Ile~~k~~~--------~~~~~s~~~~si~l~k~~~-k~Kkkk~C~C  663 (663)
                      +|++|++.++.+.....        .......+...+.+.++.+ .....++|||
T Consensus       157 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         157 AFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             HHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            99999999987765432        1222234455566665543 3345566777

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01875 RhoG RhoG subfamily

Probab=99.97  E-value=1.6e-30  Score=251.40  Aligned_cols=164  Identities=22%  Similarity=0.403  Sum_probs=145.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||+.+|+.+.|...+.+|++.++ .+.+.+++. .+.|+||||+||++|+.++..||++||++|+
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGR-TVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCE-EEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            38999999999999999999999999999999998665 445667765 7999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEE
Q psy4094         538 VFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       538 VyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ff  605 (663)
                      |||++++.||+.+. .|+..+..+     ..++|+||||||+||.+.+           ..+..++++++++.++...||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~  155 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHH-----CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL  155 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence            99999999999997 698888753     2469999999999996543           246778999999999866899


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +|||++|+||+++|.++++.++.
T Consensus       156 e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         156 ECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=1.3e-30  Score=250.77  Aligned_cols=162  Identities=22%  Similarity=0.409  Sum_probs=145.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||||+++|+++.|...|.+|++.++. +.+.+++. .+.|+||||+|+++|..++..+|++||++|||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~-~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQ-RIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCE-EEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            79999999999999999999999999999999987764 56777775 79999999999999999999999999999999


Q ss_pred             EeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.||+.+ ..|+..+..++     .++|+||||||+||..+           ...+..+++.++++.+++..|+|
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-----~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E  154 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-----PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE  154 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-----CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence            999999999996 79999998753     46899999999999642           12588899999999999768999


Q ss_pred             EeCCCCcC-HHHHHHHHHHHHH
Q psy4094         607 TSAKDNIN-IDDAAKTLVQKIL  627 (663)
Q Consensus       607 tSAKtGeN-VeELFe~IIr~Il  627 (663)
                      |||++|+| |+++|..+++.++
T Consensus       155 ~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         155 CSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CccCcCCcCHHHHHHHHHHHHh
Confidence            99999995 9999999999655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=2.9e-30  Score=248.37  Aligned_cols=168  Identities=25%  Similarity=0.442  Sum_probs=146.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|++|||||||+++|+.+.|...+.++++..+ .+.+.+++. .+.++||||+|+++|..++..+|+++|++||||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQ-PCMLEVLDTAGQEEYTALRDQWIREGEGFILVY   78 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCE-EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence            689999999999999999999999888889988554 455666665 688999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF  619 (663)
                      |+++..+|+.+..|+..+..+.. ....++|+||||||+|+...+ .+...++..++..+++ .||+|||++|.||+++|
T Consensus        79 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilvgNK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          79 SITSRSTFERVERFREQIQRVKD-ESAADVPIMIVGNKCDKVYER-EVSTEEGAALARRLGC-EFIEASAKTNVNVERAF  155 (190)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc-ccCCCCCEEEEEEChhccccC-ccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHH
Confidence            99999999999999998876532 113568999999999997655 6777888889988885 89999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q psy4094         620 KTLVQKILENDKV  632 (663)
Q Consensus       620 e~IIr~Ile~~k~  632 (663)
                      +++++.+..++..
T Consensus       156 ~~l~~~l~~~~~~  168 (190)
T cd04144         156 YTLVRALRQQRQG  168 (190)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999988766554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=3.7e-30  Score=240.10  Aligned_cols=164  Identities=32%  Similarity=0.612  Sum_probs=149.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+.+.|...+.++++.++..+.+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il   80 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQ-KIKLQIWDTAGQERFRAVTRSYYRGAAGALM   80 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999999999999999999998888888776 6899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+...    ...++|+||||||+|+...+ .+..+++.++++..++ .|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~e  154 (166)
T cd04122          81 VYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLEAQR-DVTYEEAKQFADENGL-LFLECSAKTGENVED  154 (166)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccc-CcCHHHHHHHHHHcCC-EEEEEECCCCCCHHH
Confidence            99999999999999999988753    23568999999999998766 6778899999998885 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|.++++.+++
T Consensus       155 ~f~~l~~~~~~  165 (166)
T cd04122         155 AFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=5.2e-30  Score=259.08  Aligned_cols=169  Identities=19%  Similarity=0.344  Sum_probs=150.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|||+.|||||+|+.+|+.+.|...|.+|++.+|. ..+.+++. .+.|+||||+|+++|..++..||++||++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~-~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQ-RVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCE-EEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            35689999999999999999999999999999999997774 45777776 79999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094         536 FIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG  603 (663)
Q Consensus       536 ILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~  603 (663)
                      |||||++++.+|+.+ ..|+..+..++     .++|+||||||+||..+           .+.+..++++++|+.+++..
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~  163 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYC-----PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV  163 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence            999999999999984 89999998653     35899999999999642           23688999999999999757


Q ss_pred             EEEEeCCCCc-CHHHHHHHHHHHHHhhhh
Q psy4094         604 WFETSAKDNI-NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       604 ffEtSAKtGe-NVeELFe~IIr~Ile~~k  631 (663)
                      ||||||++|+ ||+++|..++..++.+..
T Consensus       164 ~~EtSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         164 YLECSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             EEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            9999999998 899999999999887543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=5.7e-30  Score=244.69  Aligned_cols=187  Identities=34%  Similarity=0.600  Sum_probs=160.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+++|+++.|...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv   79 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK-IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV   79 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence            58999999999999999999999998889999999998888888776 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|..+..|+..+..+.    ...+|+||||||+|+.+.+ .+..+++..++..+++ +|++|||++|.||+++
T Consensus        80 ~d~~~~~s~~~i~~~~~~i~~~~----~~~~~~ivv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~  153 (188)
T cd04125          80 YDVTDQESFENLKFWINEINRYA----RENVIKVIVANKSDLVNNK-VVDSNIAKSFCDSLNI-PFFETSAKQSINVEEA  153 (188)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECCCCcccc-cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999999999999999988642    3458999999999998665 6777888889888886 8999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094         619 AKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC  663 (663)
Q Consensus       619 Fe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C  663 (663)
                      |.++++.++.+...+..           ...+..++.+++.+|.|
T Consensus       154 f~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  187 (188)
T cd04125         154 FILLVKLIIKRLEEQEL-----------SPKNIKQQFKKKNNCFI  187 (188)
T ss_pred             HHHHHHHHHHHhhcCcC-----------CccccccccccccCccc
Confidence            99999999875443321           11333345666778877

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095|consensus

Probab=99.97  E-value=8.8e-31  Score=248.81  Aligned_cols=173  Identities=32%  Similarity=0.615  Sum_probs=159.9

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      +++..|||++||..|||||+|+++|..+.|++..-.|+|++|..+++.++++ .++|+||||+||++|+++...||+.|+
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge-kiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE-KIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe-EEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            5778999999999999999999999999999999999999999999999998 899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|||||++...+|+-+.+|+.+|.++.+    ..+--||||||+|+.+.| ++..+.+++|...+. +-|+|+||+...
T Consensus        82 alilvydiscqpsfdclpewlreie~yan----~kvlkilvgnk~d~~drr-evp~qigeefs~~qd-myfletsakea~  155 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYAN----NKVLKILVGNKIDLADRR-EVPQQIGEEFSEAQD-MYFLETSAKEAD  155 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhh----cceEEEeeccccchhhhh-hhhHHHHHHHHHhhh-hhhhhhcccchh
Confidence            99999999999999999999999998753    346679999999998877 889999999999877 479999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhhh
Q psy4094         614 NIDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~~  633 (663)
                      ||+.||..++-.+....+..
T Consensus       156 nve~lf~~~a~rli~~ar~~  175 (213)
T KOG0095|consen  156 NVEKLFLDLACRLISEARQN  175 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHhc
Confidence            99999999998887776543

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=8.5e-30  Score=239.68  Aligned_cols=169  Identities=31%  Similarity=0.597  Sum_probs=150.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC---------ceeEEEEEEeCCCccchhhhHH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH---------ETIIRLQLWDIAGQERFGNMTR  526 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg---------e~~vkLqIwDTpGQErfrsl~~  526 (663)
                      ++.+||+|+|++|||||||+++|.++.|...+.++++.++....+.+..         ...+.+.|||++|+++|..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            3568999999999999999999999999999999999999877776642         2258899999999999999999


Q ss_pred             HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         527 VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       527 ~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      .+++++|++|+|||++++.+|..+..|+..+..+.   ...+.|+||||||+|+...+ .+..+++.+++..+++ +|++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e  156 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA---YCENPDIVLCGNKADLEDQR-QVSEEQAKALADKYGI-PYFE  156 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEeCccchhcC-ccCHHHHHHHHHHcCC-eEEE
Confidence            99999999999999999999999999999987642   23468999999999998765 6778889999999985 8999


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         607 TSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      |||++|.|++++|++|++.++++
T Consensus       157 ~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         157 TSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=7.8e-30  Score=242.56  Aligned_cols=165  Identities=28%  Similarity=0.393  Sum_probs=147.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||+++|+.+.|...+.++++..+ ...+.+++. .+.++|||++|+++|+.++..+++.+|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il   79 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNE-PALLDILDTAGQAEFTAMRDQYMRCGEGFII   79 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCE-EEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence            37999999999999999999999999989999998555 455677765 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+....   ...++|+||||||+|+...+ .+..+++..+++.+++ +|++|||++|.||++
T Consensus        80 v~d~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilvgNK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~  154 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRVR---LTEDIPLVLVGNKVDLESQR-QVTTEEGRNLAREFNC-PFFETSAALRHYIDD  154 (172)
T ss_pred             EEECCchhHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhhhhcC-ccCHHHHHHHHHHhCC-EEEEEecCCCCCHHH
Confidence            999999999999999998887642   23569999999999997765 6788899999998885 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy4094         618 AAKTLVQKILEN  629 (663)
Q Consensus       618 LFe~IIr~Ile~  629 (663)
                      +|++|++.+...
T Consensus       155 ~f~~l~~~~~~~  166 (172)
T cd04141         155 AFHGLVREIRRK  166 (172)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=1.3e-29  Score=249.38  Aligned_cols=169  Identities=28%  Similarity=0.441  Sum_probs=152.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||++|||||||+++|+++.|...+.+|++.+++.+.+.+++...+.++|||++|++.|..++..|+++||++|||
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999999999999999999999998765468999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+...... ...++|+||||||+|+...+ .+..+++.++++.+++ .+++|||++|+||+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~-~~~~~piilVgNK~DL~~~~-~v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~l  157 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKS-SETQPLVVLVGNKTDLEHNR-TVKDDKHARFAQANGM-ESCLVSAKTGDRVNLL  157 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccc-cCCCceEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHH
Confidence            9999999999999999999876422 12457899999999997655 6788889999999885 8999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4094         619 AKTLVQKILEND  630 (663)
Q Consensus       619 Fe~IIr~Ile~~  630 (663)
                      |++|++.+....
T Consensus       158 f~~l~~~l~~~~  169 (215)
T cd04109         158 FQQLAAELLGVD  169 (215)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=1.9e-29  Score=249.28  Aligned_cols=169  Identities=32%  Similarity=0.611  Sum_probs=153.5

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .++.+||+|||+.|||||||+++|+++.+...+.+++|.++..+.+.+++. .+.++|||++|+++|..++..+++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-TVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            446799999999999999999999999998889999999999999988875 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||||+++..+|+.+..|+..+..+.    ..++|+||||||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~----~~~~piiiv~nK~Dl~~~~-~~~~~~~~~l~~~~~~-~~~e~SA~~g~~  161 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHA----DSNIVIMMAGNKSDLNHLR-SVAEEDGQALAEKEGL-SFLETSALEATN  161 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhC----CCCCeEEEEEEChhccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            999999999999999999999988642    3569999999999997765 6778888999888874 899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4094         615 IDDAAKTLVQKILEND  630 (663)
Q Consensus       615 VeELFe~IIr~Ile~~  630 (663)
                      |+++|++|++.+....
T Consensus       162 v~~lf~~l~~~i~~~~  177 (216)
T PLN03110        162 VEKAFQTILLEIYHII  177 (216)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987754

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=1e-29  Score=234.38  Aligned_cols=161  Identities=36%  Similarity=0.650  Sum_probs=151.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|+.|||||||+++|+++.|...+.+++|.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|+||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f   79 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGK-PVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF   79 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTE-EEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999999999999999999999999999876 789999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF  619 (663)
                      |++++.||+.+..|+..+..+..    .++|+||||||+|+.+.+ .+..++++++++.++ .+|++|||+++.||.++|
T Consensus        80 d~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~~-~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen   80 DVTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDER-EVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             ETTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGGS-SSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred             ccccccccccccccccccccccc----ccccceeeeccccccccc-cchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence            99999999999999999997643    468999999999998755 788999999999999 699999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         620 KTLVQKIL  627 (663)
Q Consensus       620 e~IIr~Il  627 (663)
                      ..+++.++
T Consensus       154 ~~~i~~i~  161 (162)
T PF00071_consen  154 QELIRKIL  161 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999885

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=1.4e-29  Score=236.11  Aligned_cols=167  Identities=32%  Similarity=0.575  Sum_probs=150.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++.+|++|
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCe-EEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            4589999999999999999999999999889999999988888888776 789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..++......++|+||||||+|+.. + .+..+++.+++..+++..|+++||++|.||.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-R-QVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-c-ccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999999999888765443446799999999999973 3 5778899999999987789999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         617 DAAKTLVQKI  626 (663)
Q Consensus       617 ELFe~IIr~I  626 (663)
                      ++|+++++.+
T Consensus       161 ~~~~~~~~~~  170 (170)
T cd04116         161 AAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=2.4e-29  Score=238.89  Aligned_cols=168  Identities=26%  Similarity=0.435  Sum_probs=145.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+++|+++.+...+.++++.++.. .+...++..+.++||||+|+++|..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            489999999999999999999999999999999877754 4555423378999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      ||++++.+|+.+. .|+..+..+     ..++|+||||||+|+...+   ..+..+++.+++..++...||+|||++|.|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            9999999999996 598877643     2468999999999996532   356788999999999876899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKV  632 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~  632 (663)
                      |+++|..+++.++..+..
T Consensus       155 v~~~f~~l~~~~~~~~~~  172 (187)
T cd04132         155 VEEVFDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999999876654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=2.2e-29  Score=235.57  Aligned_cols=165  Identities=34%  Similarity=0.715  Sum_probs=150.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +.+||+|+|++|||||||+++|.++.|...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK-KIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE-EEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            4689999999999999999999999999999999999998888888876 689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..+    ...++|+||||||+|+.+.+ .+..+++..++..+++ +|++|||++|.||+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  154 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNKCDMEEKR-VVSKEEGEALADEYGI-KFLETSAKANINVE  154 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHH
Confidence            999999999999999999999864    23568999999999998755 6677888999998885 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4094         617 DAAKTLVQKILE  628 (663)
Q Consensus       617 ELFe~IIr~Ile  628 (663)
                      ++|++|+++++.
T Consensus       155 ~~~~~i~~~~~~  166 (167)
T cd01867         155 EAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=1.4e-29  Score=241.84  Aligned_cols=161  Identities=20%  Similarity=0.359  Sum_probs=142.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||||+.+|+.+.|...|.+|++.++. ..+.+++. .+.|+|||++|+++|..++..+++++|++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCE-EEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            79999999999999999999999999999999987664 45666665 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.+|+.+. .|+..+..+     ..++|+||||||+|+..+           .+.+..++++++++..+.+.|+|
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e  154 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE  154 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence            9999999999997 599888753     246899999999998653           13678889999999888668999


Q ss_pred             EeCCCCcCHHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~I  626 (663)
                      |||++|.||+++|+.+++.+
T Consensus       155 ~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         155 CSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             ecCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=3.4e-29  Score=229.56  Aligned_cols=166  Identities=28%  Similarity=0.506  Sum_probs=149.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.++||||+|+++|..++..+++++|++|+|
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK-EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV   79 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe-EEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999999999999999998888888876 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCC-CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTL-PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~-~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ||++++.+|+.+..|+..+..++.. ....++|+|+|+||+|+...+ .+..+++..++...+ ++||++||++|.|+++
T Consensus        80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  157 (168)
T cd04119          80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAESKG-FKYFETSACTGEGVNE  157 (168)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc-ccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence            9999999999999999999876431 112469999999999997544 567888888888888 4899999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         618 AAKTLVQKIL  627 (663)
Q Consensus       618 LFe~IIr~Il  627 (663)
                      +|++|++.++
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0088|consensus

Probab=99.97  E-value=1.5e-30  Score=249.08  Aligned_cols=171  Identities=32%  Similarity=0.560  Sum_probs=159.9

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +...|||+++|.+-||||+|+.||+.+.|.-.+..|+-..|..+.+.+.+. ...|.||||+||++|..+...||+..++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~-ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDC-RADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccc-eeeeeeeeccchHhhhccCceEEeCCCc
Confidence            345699999999999999999999999999999999999999999999886 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||||++|++||+.+..|..+|+..+    +..+.+++||||+||.++| .|..+++.+++..-|. .|+++||+.+.|
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~ml----Gnei~l~IVGNKiDLEeeR-~Vt~qeAe~YAesvGA-~y~eTSAk~N~G  162 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTML----GNEIELLIVGNKIDLEEER-QVTRQEAEAYAESVGA-LYMETSAKDNVG  162 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHh----CCeeEEEEecCcccHHHhh-hhhHHHHHHHHHhhch-hheecccccccC
Confidence            999999999999999999999999753    4568999999999999988 8999999999999996 799999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKV  632 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~  632 (663)
                      |.++|+.+...++++...
T Consensus       163 i~elFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999999988754

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=2.5e-29  Score=231.03  Aligned_cols=161  Identities=30%  Similarity=0.530  Sum_probs=143.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+.+.|...+.+|++ +++.+.+.+++. .+.++||||+|+++|+.++..+++++|++|+|
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQ-QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCE-EEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            7999999999999999999999999888888887 556677777775 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||+++..+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++..+++.++ .+||+|||++|.||+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVK---DTENVPMVLVGNKCDLEDER-VVSREEGQALARQWG-CPFYETSAKSKINVDEV  154 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-eecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence            99999999999999999887642   23579999999999997655 566777888888888 58999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |++|++.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998865

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=2.5e-29  Score=235.13  Aligned_cols=160  Identities=33%  Similarity=0.641  Sum_probs=146.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+.+.|.+.+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI-KVRIQIWDTAGQERYQTITKQYYRRAQGIFLV   79 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence            58999999999999999999999999999999999998888888875 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+..+.    ..++|+|+||||.|+...+ .+..+++..+++..+ ++|++|||++|.||+++
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~----~~~~~iilvgnK~Dl~~~~-~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  153 (161)
T cd04117          80 YDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGNKADEEQKR-QVGDEQGNKLAKEYG-MDFFETSACTNSNIKES  153 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-CCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            99999999999999999988642    3469999999999997766 677889999999888 48999999999999999


Q ss_pred             HHHHHHH
Q psy4094         619 AKTLVQK  625 (663)
Q Consensus       619 Fe~IIr~  625 (663)
                      |.+|++.
T Consensus       154 f~~l~~~  160 (161)
T cd04117         154 FTRLTEL  160 (161)
T ss_pred             HHHHHhh
Confidence            9999874

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=3.7e-29  Score=240.86  Aligned_cols=167  Identities=31%  Similarity=0.577  Sum_probs=149.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      +||+|+|++|||||||+++|+++.+. ..+.++++.++....+.+++. .+.++||||+|+++|..++..+++.+|++|+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~   79 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV-KVKLQIWDTAGQERFRSVTHAYYRDAHALLL   79 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE-EEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence            58999999999999999999998886 468889998988888888776 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+++..|+..+....    ..++|+||||||+|+...+ .+..+++..++..+++ +|+++||++|.|+++
T Consensus        80 v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~-~~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~  153 (191)
T cd04112          80 LYDITNKASFDNIRAWLTEIKEYA----QEDVVIMLLGNKADMSGER-VVKREDGERLAKEYGV-PFMETSAKTGLNVEL  153 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEcccchhcc-ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHH
Confidence            999999999999999999988642    2468999999999997655 5677888899988885 899999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q psy4094         618 AAKTLVQKILENDKV  632 (663)
Q Consensus       618 LFe~IIr~Ile~~k~  632 (663)
                      +|.+|++.+......
T Consensus       154 l~~~l~~~~~~~~~~  168 (191)
T cd04112         154 AFTAVAKELKHRKYE  168 (191)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999877543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=3.2e-29  Score=240.94  Aligned_cols=167  Identities=29%  Similarity=0.504  Sum_probs=147.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|+++.+...+.+|++..+ .+.+.+++. .+.++||||+|+++|..++..|++.+|++|+
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEE-TCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCE-EEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            48999999999999999999999999888999988665 566777775 6899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++..++..++. +|++|||++|.||++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~-~i~~~~~~~~~~~~~~-~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVK---DKDRVPMILVGNKCDLDSER-QVSTGEGQELAKSFGI-PFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-ccCHHHHHHHHHHhCC-EEEEeeCCCCCCHHH
Confidence            999999999999999999887642   23579999999999997655 5677788888888885 899999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy4094         618 AAKTLVQKILENDK  631 (663)
Q Consensus       618 LFe~IIr~Ile~~k  631 (663)
                      +|.+|++.+....+
T Consensus       158 ~~~~l~~~l~~~~~  171 (189)
T PTZ00369        158 AFYELVREIRKYLK  171 (189)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999876544

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=4.5e-29  Score=249.98  Aligned_cols=164  Identities=25%  Similarity=0.408  Sum_probs=142.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||++|||||||+++|+.+.|.. +.+|++.++..+.+    . .+.|.|||++|+++|+.++..||+++|++|+|
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~-~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV   74 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----G-PYNISIWDTAGREQFHGLGSMYCRGAAAVILT   74 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----e-EEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence            589999999999999999999999874 67888887765544    1 47899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC------------------CCCCCCHHHHHHHHHHcC
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK------------------EGIANNPAKIDEFIKEHN  600 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d------------------er~~Vs~eei~qlak~~g  600 (663)
                      ||++++.+|+.+..|+..+...    ...++|+||||||+||..                  ..+.+..+++.++++..+
T Consensus        75 ~Dvt~~~Sf~~l~~~~~~l~~~----~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~  150 (220)
T cd04126          75 YDVSNVQSLEELEDRFLGLTDT----ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN  150 (220)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence            9999999999999888877643    235689999999999965                  134788999999999876


Q ss_pred             C-------------CeEEEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         601 F-------------SGWFETSAKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       601 ~-------------i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                      .             +.||||||++|+||+++|..|++.++.....
T Consensus       151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~  195 (220)
T cd04126         151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILA  195 (220)
T ss_pred             ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            2             4799999999999999999999988765543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=4.8e-29  Score=250.29  Aligned_cols=166  Identities=22%  Similarity=0.394  Sum_probs=146.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||+|+.+|+.+.|...|.+|++.+|. ..+.+++. .+.|.||||+|++.|..++..+|+++|++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~-~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKR-RIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCE-EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            79999999999999999999999999999999987664 56777776 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.+|+.+ ..|+..+..+     ..++|+||||||+||..+.           ..+..+++..+++.++++.|||
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E  154 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE  154 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999 5788777643     3569999999999996531           1367889999999999778999


Q ss_pred             EeCCCCcC-HHHHHHHHHHHHHhhhh
Q psy4094         607 TSAKDNIN-IDDAAKTLVQKILENDK  631 (663)
Q Consensus       607 tSAKtGeN-VeELFe~IIr~Ile~~k  631 (663)
                      |||++++| |+++|..++..++.+..
T Consensus       155 ~SAk~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         155 CSSRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             cCCCcCCcCHHHHHHHHHHHHHhccC
Confidence            99999985 99999999998877554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=2.7e-29  Score=242.19  Aligned_cols=163  Identities=27%  Similarity=0.472  Sum_probs=143.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||||+++|+.+.|..+|.+|+|.++..+.+.+++. .+.|+|||++|+++|..++..++++||++|+|
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~-~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv   79 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT-EITFSIWDLGGQREFINMLPLVCNDAVAILFM   79 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence            58999999999999999999999999999999999998888988876 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----CCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE----GIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de----r~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      ||++++.+|+.+..|+..+..+.    ...+| ||||||+||..+    ......+++++++..++ +.|++|||++|.|
T Consensus        80 ~D~t~~~s~~~i~~~~~~~~~~~----~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~  153 (182)
T cd04128          80 FDLTRKSTLNSIKEWYRQARGFN----KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSIN  153 (182)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC----CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            99999999999999999988642    23466 689999999531    11233567888998888 4899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy4094         615 IDDAAKTLVQKILE  628 (663)
Q Consensus       615 VeELFe~IIr~Ile  628 (663)
                      |+++|+++++.++.
T Consensus       154 v~~lf~~l~~~l~~  167 (182)
T cd04128         154 VQKIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=6.6e-29  Score=231.94  Aligned_cols=163  Identities=33%  Similarity=0.670  Sum_probs=147.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|.++.|...+.++++.++....+..++. .+.+++||++|+++|..++..+++++|++|+|
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v   80 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDK-RVKLQIWDTAGQERYRTITTAYYRGAMGFILM   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence            79999999999999999999999999999999999888888877765 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+..+.    ..++|+||||||+|+...+ .+..+++.+++..+++ +|++|||++|.||+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l  154 (165)
T cd01865          81 YDITNEESFNAVQDWSTQIKTYS----WDNAQVILVGNKCDMEDER-VVSSERGRQLADQLGF-EFFEASAKENINVKQV  154 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC----CCCCCEEEEEECcccCccc-ccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHH
Confidence            99999999999999999987542    3468999999999997765 5667888889888885 8999999999999999


Q ss_pred             HHHHHHHHHh
Q psy4094         619 AKTLVQKILE  628 (663)
Q Consensus       619 Fe~IIr~Ile  628 (663)
                      |++|++.+.+
T Consensus       155 ~~~l~~~~~~  164 (165)
T cd01865         155 FERLVDIICD  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999987754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=5.9e-29  Score=231.34  Aligned_cols=163  Identities=34%  Similarity=0.641  Sum_probs=148.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +.+||+|+|+.|||||||+++|..+.+...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++.+|++|
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK-RVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            4589999999999999999999999999889999998988888888775 678999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..+    ...++|+|||+||+|+...+ .+..+++..+++.+++..+++|||++|.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNKCDLEEQR-EVLFEEACTLAEKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence            999999999999999999999753    23579999999999997765 6777889999999887789999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         617 DAAKTLVQK  625 (663)
Q Consensus       617 ELFe~IIr~  625 (663)
                      ++|++|++.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=1.3e-28  Score=235.53  Aligned_cols=165  Identities=28%  Similarity=0.533  Sum_probs=145.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      +||+|+|++|||||||+++|+++.|.. .+.++++.++..+.+.+++. .+.|.|||++|+++|..++..+++++|++||
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil   79 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER-VVTLGIWDTAGSERYEAMSRIYYRGAKAAIV   79 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE-EEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence            589999999999999999999999875 68899998888888888876 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC---CCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de---r~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      |||+++..+|+.+..|+..+...     ..++|+|||+||+|+...   ...+..+++.+++..++. .||++||++|.|
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g  153 (193)
T cd04118          80 CYDLTDSSSFERAKFWVKELQNL-----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSSKTGQN  153 (193)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhc-----CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999999999999988753     246899999999998542   135566778888888875 799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4094         615 IDDAAKTLVQKILEND  630 (663)
Q Consensus       615 VeELFe~IIr~Ile~~  630 (663)
                      |+++|++|++.+....
T Consensus       154 v~~l~~~i~~~~~~~~  169 (193)
T cd04118         154 VDELFQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999997654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=8.8e-29  Score=229.94  Aligned_cols=164  Identities=37%  Similarity=0.701  Sum_probs=149.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|+
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-TIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            489999999999999999999999998899999999998888888875 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|..+..|+..+....    ..++|+|+|+||+|+...+ .+..+++..++..+++ +|+++||++|.||++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  154 (166)
T cd01869          81 VYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTDKR-VVDYSEAQEFADELGI-PFLETSAKNATNVEQ  154 (166)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC----CCCCcEEEEEEChhccccc-CCCHHHHHHHHHHcCC-eEEEEECCCCcCHHH
Confidence            999999999999999999998642    3468999999999997765 5777889999998885 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|.+|++++..
T Consensus       155 ~~~~i~~~~~~  165 (166)
T cd01869         155 AFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999998853

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.96  E-value=1.1e-28  Score=235.54  Aligned_cols=160  Identities=23%  Similarity=0.348  Sum_probs=141.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+.+|+.+.|...|.++++ +.+...+.+++. .+.|+||||+|+++|..++..+++++|++|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCE-EEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            7999999999999999999999999999999987 444556667665 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.+|+.+. .|+..+...     ..++|+||||||+||...+           ..+..+++..++..++++.|+|
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  154 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  154 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999996 698888753     2469999999999996532           2578899999999999778999


Q ss_pred             EeCCCCcCHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~  625 (663)
                      |||++|+||+++|+.+++.
T Consensus       155 ~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         155 CSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             ecccccCCHHHHHHHHHHh
Confidence            9999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=1.9e-28  Score=227.31  Aligned_cols=161  Identities=29%  Similarity=0.522  Sum_probs=142.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+.+.+...+.++++..+ .+.+.+++. .+.++||||+|+++|..++..+++++|++|+|
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQ-QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCE-EEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            7999999999999999999999988888888888554 456777765 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||+++..+|+.+..|+..+....   ...++|+||||||+|+...+ .+..+++..+++.+++ +|++|||++|.||+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~  154 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDER-VVGKEQGQNLARQWGC-AFLETSAKAKINVNEI  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcchhcc-EEcHHHHHHHHHHhCC-EEEEeeCCCCCCHHHH
Confidence            99999999999999999887542   34679999999999997755 5666778888888884 8999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |.+|++++
T Consensus       155 ~~~l~~~l  162 (164)
T cd04175         155 FYDLVRQI  162 (164)
T ss_pred             HHHHHHHh
Confidence            99999866

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=1.8e-28  Score=226.79  Aligned_cols=161  Identities=27%  Similarity=0.453  Sum_probs=142.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+.+.+...+.++++ +++...+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSS-PSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCE-EEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            7999999999999999999999999888888876 666777888775 67899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+++..|+..+....   ...++|+||||||+|+...+ .+...++..++..++. +|++|||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piviv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l  154 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVK---GYEKVPIILVGNKVDLESER-EVSSAEGRALAEEWGC-PFMETSAKSKTMVNEL  154 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcC-ccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHH
Confidence            99999999999999999888642   23579999999999997654 5666778888888874 8999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |.++++++
T Consensus       155 ~~~l~~~l  162 (163)
T cd04176         155 FAEIVRQM  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=2.6e-28  Score=226.18  Aligned_cols=163  Identities=36%  Similarity=0.675  Sum_probs=147.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +.+||+|+|.+|||||||+++|+++.+...+.++++.++..+.+.+++. .+.+++||++|+++|..++..++++++++|
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK-TIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            4589999999999999999999999999899999999998888888875 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..+.    ..++|+||||||+|+...+ .+..+++..++...+ +.|++|||++|.||+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  154 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTEEAKAFAEKNG-LSFIETSALDGTNVE  154 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-cCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence            9999999999999999999988653    2358999999999997765 667788889998877 489999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         617 DAAKTLVQKI  626 (663)
Q Consensus       617 ELFe~IIr~I  626 (663)
                      ++|++|+..+
T Consensus       155 ~l~~~l~~~i  164 (165)
T cd01868         155 EAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999999876

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0081|consensus

Probab=99.96  E-value=5.2e-30  Score=245.57  Aligned_cols=177  Identities=29%  Similarity=0.532  Sum_probs=161.9

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC--------ceeEEEEEEeCCCccchhhh
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH--------ETIIRLQLWDIAGQERFGNM  524 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg--------e~~vkLqIwDTpGQErfrsl  524 (663)
                      ..+++.+|++.+|++|||||+|+.+|..+.|......|+|+||..+.+.++.        ...+.|++|||+||++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            3578899999999999999999999999999999999999999999887742        23699999999999999999


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f  604 (663)
                      ...||+.|-++||+||+++..||-++..|+.+|+.|.   ...+..|||+|||+||.+.| .|..+++.++|..+++ +|
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R-~Vs~~qa~~La~kygl-PY  158 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---YCENPDIVLCGNKADLEDQR-VVSEDQAAALADKYGL-PY  158 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh---ccCCCCEEEEcCccchhhhh-hhhHHHHHHHHHHhCC-Ce
Confidence            9999999999999999999999999999999999764   34667899999999999988 8999999999999995 89


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~k~~~  634 (663)
                      ||+||-+|.||++..+.++..++++...-.
T Consensus       159 fETSA~tg~Nv~kave~LldlvM~Rie~~v  188 (219)
T KOG0081|consen  159 FETSACTGTNVEKAVELLLDLVMKRIEQCV  188 (219)
T ss_pred             eeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988876433

>PLN03118 Rab family protein; Provisional

Probab=99.96  E-value=8.2e-28  Score=235.29  Aligned_cols=172  Identities=33%  Similarity=0.561  Sum_probs=148.2

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .....+||+|||+.|||||||+++|+++.+ ..+.++++.++....+.+++. .+.++||||+|+++|..++..+++++|
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGK-RLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCE-EEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            345569999999999999999999999877 467889998888888888775 688999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         534 GAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~-wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      ++|||||++++.+|+.+.. |...+..+.   ...+.|+|||+||+|+...+ .+..+++..++..+++ .||+|||++|
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~-~i~~~~~~~~~~~~~~-~~~e~SAk~~  162 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESER-DVSREEGMALAKEHGC-LFLECSAKTR  162 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccC-ccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            9999999999999999975 666665432   23458999999999997765 5677888889888885 7999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhh
Q psy4094         613 INIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k~  632 (663)
                      .||+++|++|++.+......
T Consensus       163 ~~v~~l~~~l~~~~~~~~~~  182 (211)
T PLN03118        163 ENVEQCFEELALKIMEVPSL  182 (211)
T ss_pred             CCHHHHHHHHHHHHHhhhhh
Confidence            99999999999999876543

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=2.1e-28  Score=242.96  Aligned_cols=166  Identities=33%  Similarity=0.535  Sum_probs=146.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|||+.|||||||+++|+.+.|...+.+|+|.++....+.+++. .+.+.|||++|+++|..++..||+++|++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCe-EEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            45589999999999999999999999999999999999998888877765 68999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+...+     .++|+||||||+|+...  .+..+++ +++...++ .||+|||++|+||
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~--~v~~~~~-~~~~~~~~-~~~e~SAk~~~~i  160 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QVKAKQV-TFHRKKNL-QYYEISAKSNYNF  160 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhhc--cCCHHHH-HHHHhcCC-EEEEcCCCCCCCH
Confidence            99999999999999999999998653     46999999999999643  3445555 67777664 8999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|.+|++.++....
T Consensus       161 ~~~f~~l~~~~~~~~~  176 (219)
T PLN03071        161 EKPFLYLARKLAGDPN  176 (219)
T ss_pred             HHHHHHHHHHHHcCcc
Confidence            9999999999987654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=2.7e-28  Score=224.44  Aligned_cols=159  Identities=35%  Similarity=0.639  Sum_probs=144.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecC--CceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +||+|+|++|||||||+++|.++.+...+.++++.++....+.+.  +. .+.++|||++|+++|..++..+++++|++|
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v   79 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDE-DVRLMLWDTAGQEEFDAITKAYYRGAQACI   79 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCC-EEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence            489999999999999999999999999999999999988777776  44 689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+...+     .++|+|||+||+|+..++ .+..+++..++..+++ +||++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  152 (162)
T cd04106          80 LVFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKIDLLDQA-VITNEEAEALAKRLQL-PLFRTSVKDDFNVT  152 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhccccc-CCCHHHHHHHHHHcCC-eEEEEECCCCCCHH
Confidence            9999999999999999999887542     469999999999997765 5677889999999886 89999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         617 DAAKTLVQK  625 (663)
Q Consensus       617 ELFe~IIr~  625 (663)
                      ++|++|...
T Consensus       153 ~l~~~l~~~  161 (162)
T cd04106         153 ELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=3.1e-28  Score=231.16  Aligned_cols=164  Identities=30%  Similarity=0.495  Sum_probs=145.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|||+.|||||||+++|+++.|..+|.+|++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|+||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   80 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV-PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF   80 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence            8999999999999999999999999999999999998888888876 689999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      |++++.+|+.+..|+..+....   ....+|+||||||+|+...+ ..+..+++.+++..++. .|++|||++|.||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~l  156 (170)
T cd04108          81 DLTDVASLEHTRQWLEDALKEN---DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSVSALSGENVREF  156 (170)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEEECCCCCCHHHH
Confidence            9999999999999999886542   12357899999999996543 13456778888888885 7999999999999999


Q ss_pred             HHHHHHHHHh
Q psy4094         619 AKTLVQKILE  628 (663)
Q Consensus       619 Fe~IIr~Ile  628 (663)
                      |+.|++.+.+
T Consensus       157 f~~l~~~~~~  166 (170)
T cd04108         157 FFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04134 Rho3 Rho3 subfamily

Probab=99.96  E-value=1.8e-28  Score=236.18  Aligned_cols=162  Identities=26%  Similarity=0.409  Sum_probs=141.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|++|||||||+++|..+.|...+.++++.++. ..+.+++. .+.|+|||++|+++|..++..+|+++|++||||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~-~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGL-HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCE-EEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            8999999999999999999999999899999987654 45666665 689999999999999999999999999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHHcCCCeEEEE
Q psy4094         540 DVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-----------ANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       540 DVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-----------~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      |++++.+|+.+. .|+..+..+.     .++|+||||||+||...+.           .+..+++..++...+.+.|++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC  154 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence            999999999996 6998887542     4699999999999976431           3566778889988886789999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHh
Q psy4094         608 SAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile  628 (663)
                      ||++|.||+++|.+|++.++.
T Consensus       155 SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         155 SAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             cCCcCCCHHHHHHHHHHHHhc
Confidence            999999999999999998864

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=3.5e-28  Score=224.43  Aligned_cols=161  Identities=34%  Similarity=0.608  Sum_probs=146.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGK-RVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCE-EEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence            59999999999999999999999999999999999998888888875 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|..+..|+..+..+    ...++|++||+||+|+...+ .+..+++..++..++ +.|+++||+++.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113          80 YDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNKSDLADQR-EVTFLEASRFAQENG-LLFLETSALTGENVEEA  153 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcchhc-cCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            9999999999999999988754    23579999999999997755 677888999999998 58999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |+++++.+
T Consensus       154 ~~~~~~~~  161 (161)
T cd04113         154 FLKCARSI  161 (161)
T ss_pred             HHHHHHhC
Confidence            99998763

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=5.9e-28  Score=226.58  Aligned_cols=166  Identities=35%  Similarity=0.674  Sum_probs=150.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ++.+||+|+|++|||||||+++|++..+...+.+++|.++....+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK-QIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            45689999999999999999999999998888999999998888888875 67899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |||||++++.+|+.+..|+..++.+.    ..++|+|||+||+|+...+ .+..+++..++...++ .|+++||+.++||
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i  154 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHS----NSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKEHGL-IFMETSAKTASNV  154 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence            99999999999999999999998642    3579999999999997655 5778888999988885 7999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy4094         616 DDAAKTLVQKILE  628 (663)
Q Consensus       616 eELFe~IIr~Ile  628 (663)
                      +++|.++++++++
T Consensus       155 ~~~~~~~~~~~~~  167 (168)
T cd01866         155 EEAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=5.3e-28  Score=223.41  Aligned_cols=162  Identities=31%  Similarity=0.552  Sum_probs=142.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.++++ +.+.+.+.+++. .+.+++||++|+++|..++..+++.+|++|+|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   78 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGE-VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCE-EEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence            5999999999999999999999999888888877 445566667765 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+....   ...++|+||||||+|+...+ .+..+++..++..++ .+|++|||++|.||+++
T Consensus        79 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173       79 YSITDRQSFEEIKKFREQILRVK---DRDDVPIVLVGNKCDLESER-VVSTEEGKELARQWG-CPFLETSAKERVNVDEA  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-eEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence            99999999999999998887643   23468999999999997765 567778888998888 58999999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         619 AKTLVQKIL  627 (663)
Q Consensus       619 Fe~IIr~Il  627 (663)
                      |++|++.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T smart00173      154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=6.2e-28  Score=219.99  Aligned_cols=160  Identities=28%  Similarity=0.513  Sum_probs=140.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+++||++|+++|+.++..|++++|++++|
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCE-EEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            7999999999999999999999999888888887554 556667765 67899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+....   ...++|+|||+||+|+...  .+..+++..++..+++ +|+++||++|.||+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  153 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVK---DSDDVPMVLVGNKCDLAAR--TVSSRQGQDLAKSYGI-PYIETSAKTRQGVEEA  153 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccc--eecHHHHHHHHHHhCC-eEEEecCCCCCCHHHH
Confidence            99999999999999998888643   2356899999999999762  4667788888888885 8999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |++|++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04138         154 FYTLVREI  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0097|consensus

Probab=99.96  E-value=2.6e-28  Score=230.45  Aligned_cols=174  Identities=32%  Similarity=0.599  Sum_probs=161.8

Q ss_pred             CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094         452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE  531 (663)
Q Consensus       452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~  531 (663)
                      +-++.+.||.+|||+-|||||+|+++|...+|..+...++|++|..+.+.+.++ .++|+||||+||++|+...+.||+.
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq-kiklqiwdtagqerfravtrsyyrg   83 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWDTAGQERFRAVTRSYYRG   83 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc-EEEEEEeecccHHHHHHHHHHHhcc
Confidence            345678999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      +-++++|||++.+..+..+..|+...+.    ...++..|+|+|||.||..+| ++..+++.+|+.+.|. -|+|+||++
T Consensus        84 aagalmvyditrrstynhlsswl~dar~----ltnpnt~i~lignkadle~qr-dv~yeeak~faeengl-~fle~sakt  157 (215)
T KOG0097|consen   84 AAGALMVYDITRRSTYNHLSSWLTDARN----LTNPNTVIFLIGNKADLESQR-DVTYEEAKEFAEENGL-MFLEASAKT  157 (215)
T ss_pred             ccceeEEEEehhhhhhhhHHHHHhhhhc----cCCCceEEEEecchhhhhhcc-cCcHHHHHHHHhhcCe-EEEEecccc
Confidence            9999999999999999999999988774    345778999999999999988 9999999999999996 699999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhh
Q psy4094         612 NINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~~k~  632 (663)
                      |.||++.|-..+.+|+..-+.
T Consensus       158 g~nvedafle~akkiyqniqd  178 (215)
T KOG0097|consen  158 GQNVEDAFLETAKKIYQNIQD  178 (215)
T ss_pred             cCcHHHHHHHHHHHHHHhhhc
Confidence            999999999999999876543

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=6.2e-28  Score=227.61  Aligned_cols=161  Identities=36%  Similarity=0.577  Sum_probs=141.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+++|+.+.+...+.++++.++....+..++. .+.+.+|||+|+++|..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRG-KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence            59999999999999999999999998889999999888777777665 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+...+     .++|+||||||+|+...  .+. .+..+++...+ +.||+|||++|.||+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piiiv~nK~Dl~~~--~~~-~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  150 (166)
T cd00877          80 FDVTSRVTYKNVPNWHRDLVRVC-----GNIPIVLCGNKVDIKDR--KVK-AKQITFHRKKN-LQYYEISAKSNYNFEKP  150 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhcccc--cCC-HHHHHHHHHcC-CEEEEEeCCCCCChHHH
Confidence            99999999999999999998753     27999999999999742  233 34556666655 58999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy4094         619 AKTLVQKILEN  629 (663)
Q Consensus       619 Fe~IIr~Ile~  629 (663)
                      |++|++.+++.
T Consensus       151 f~~l~~~~~~~  161 (166)
T cd00877         151 FLWLARKLLGN  161 (166)
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=1.8e-27  Score=234.00  Aligned_cols=169  Identities=34%  Similarity=0.671  Sum_probs=152.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ++.+||+|||+.|||||||+++|++..|...+.++++.++....+.+++. .+.+.+||++|+++|..++..+++.+|++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~-~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45699999999999999999999999999889999999998888888876 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||+++..+|+.+..|+..+..+.    ...+|+|+|+||+|+...+ .+..+++.++++.+++ .|+++||+++.||
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~----~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v  156 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLAHRR-AVSTEEGEQFAKEHGL-IFMEASAKTAQNV  156 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCcccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence            99999999999999999998887542    3469999999999997765 6788899999999885 8999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|+++++.++.+..
T Consensus       157 ~e~f~~l~~~~~~~~~  172 (210)
T PLN03108        157 EEAFIKTAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999986543

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=9.9e-28  Score=225.47  Aligned_cols=163  Identities=37%  Similarity=0.620  Sum_probs=146.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-hhHHHHHhcCcEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-NMTRVYYKEAVGAF  536 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-sl~~~~~r~ADgaI  536 (663)
                      .+||+|+|++|||||||+++|+.+.+...+.++++.++....+.+++. .+.++|||++|+++|+ .++..+++++|++|
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGE-RIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCe-EEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            489999999999999999999999998889999999999888888876 6899999999999987 57899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC---Cc
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD---NI  613 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt---Ge  613 (663)
                      +|||++++.+|+.+..|+..+..+.   ...++|+|||+||+|+...+ .+..+++.+++..++ ++|++|||++   +.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~  155 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHS---LPNEVPRILVGNKCDLREQI-QVPTDLAQRFADAHS-MPLFETSAKDPSEND  155 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhc---CCCCCCEEEEEECccchhhc-CCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence            9999999999999999999988653   23569999999999997765 677788889998887 5899999999   89


Q ss_pred             CHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKI  626 (663)
Q Consensus       614 NVeELFe~IIr~I  626 (663)
                      ||+++|..+++++
T Consensus       156 ~i~~~f~~l~~~~  168 (170)
T cd04115         156 HVEAIFMTLAHKL  168 (170)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=99.96  E-value=1.3e-27  Score=223.28  Aligned_cols=161  Identities=27%  Similarity=0.430  Sum_probs=139.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.|...+.++++..+ ...+..+.. .+.+++||++|+++|..++..+++.+|++|+|
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKN-ICTLQITDTTGSHQFPAMQRLSISKGHAFILV   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCE-EEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence            7999999999999999999999999888888887544 445555554 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+..... ....++|+||||||+|+...+ .+..+++..++..+++ .|++|||++|+||+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~  156 (165)
T cd04140          80 YSVTSKQSLEELKPIYELICEIKG-NNIEKIPIMLVGNKCDESHKR-EVSSNEGAACATEWNC-AFMETSAKTNHNVQEL  156 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhc-CCCCCCCEEEEEECccccccC-eecHHHHHHHHHHhCC-cEEEeecCCCCCHHHH
Confidence            999999999999999988876532 123579999999999997655 5677788888888885 7999999999999999


Q ss_pred             HHHHHH
Q psy4094         619 AKTLVQ  624 (663)
Q Consensus       619 Fe~IIr  624 (663)
                      |++|++
T Consensus       157 f~~l~~  162 (165)
T cd04140         157 FQELLN  162 (165)
T ss_pred             HHHHHh
Confidence            999975

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=1.3e-27  Score=223.12  Aligned_cols=161  Identities=29%  Similarity=0.525  Sum_probs=141.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+.+.|.+.+.++.+.++....+.+++. .+.++||||+|+++|..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGK-TILVDFWDTAGQERFQTMHASYYHKAHACILV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCE-EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence            58999999999999999999999999888888888887777777765 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+...     ..++|+|||+||+|+...    ..+++..++..++ +++|++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  149 (161)
T cd04124          80 FDVTRKITYKNLSKWYEELREY-----RPEIPCIVVANKIDLDPS----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL  149 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEECccCchh----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            9999999999999999999754     246899999999998532    2345666777777 48999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4094         619 AKTLVQKILEND  630 (663)
Q Consensus       619 Fe~IIr~Ile~~  630 (663)
                      |+.+++.+++++
T Consensus       150 ~~~l~~~~~~~~  161 (161)
T cd04124         150 FQDAIKLAVSYK  161 (161)
T ss_pred             HHHHHHHHHhcC
Confidence            999999988763

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=1.5e-27  Score=219.38  Aligned_cols=162  Identities=30%  Similarity=0.514  Sum_probs=141.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+++|||+|+++|..++..+++++|++|+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQ-WAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCE-EEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            38999999999999999999999988888888887444 455666665 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||+++..+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|.||++
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  154 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVK---DRDEFPMILVGNKADLEHQR-KVSREEGQELARKLKI-PYIETSAKDRLNVDK  154 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh---CCCCCCEEEEeeCccccccc-eecHHHHHHHHHHcCC-cEEEeeCCCCCCHHH
Confidence            999999999999999999887642   23568999999999997655 5667788889988885 899999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         618 AAKTLVQKI  626 (663)
Q Consensus       618 LFe~IIr~I  626 (663)
                      +|++|++.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04145         155 AFHDLVRVI  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=7.5e-28  Score=224.85  Aligned_cols=161  Identities=22%  Similarity=0.385  Sum_probs=141.0

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD  540 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD  540 (663)
                      |+|+|+.|||||||+++|+++.|...+.++++..+ ...+.+++. .+.++||||+|+++|..++..+++++|++|||||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   78 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGK-PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS   78 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCE-EEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence            68999999999999999999999988888887554 456667765 6899999999999999999999999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         541 VTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       541 VTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++++.+|+.+. .|+..+..+     ..++|+||||||+|+...+           ..+..+++.++++.+++..|++||
T Consensus        79 ~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  153 (174)
T smart00174       79 VDSPASFENVKEKWYPEVKHF-----CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS  153 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence            99999999996 699988753     2469999999999996532           237788899999999976899999


Q ss_pred             CCCCcCHHHHHHHHHHHHHh
Q psy4094         609 AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|.||+++|+.|++.++.
T Consensus       154 a~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      154 ALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCCCCHHHHHHHHHHHhcC
Confidence            99999999999999998754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=2.2e-27  Score=219.86  Aligned_cols=170  Identities=35%  Similarity=0.658  Sum_probs=151.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|.+..+...+.++++.++..+.+.+.+. .+.|.+||++|++.|..++..+++++|++|+|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDK-LVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   79 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCE-EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence            58999999999999999999999998888999999998888888876 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|...+...+......++|+++|+||+|+...+ .+..+++..++...+...++++||++|.|++++
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR-QVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc-ccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            9999999999999999887765543344579999999999997543 466788888998888678999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4094         619 AKTLVQKILEND  630 (663)
Q Consensus       619 Fe~IIr~Ile~~  630 (663)
                      |++|++.++++.
T Consensus       159 ~~~i~~~~~~~~  170 (172)
T cd01862         159 FETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=2.2e-27  Score=219.30  Aligned_cols=161  Identities=25%  Similarity=0.510  Sum_probs=142.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC--CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~--~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +||+|+|++|||||||+++|..+  .|..++.+++|.++..+.+.+++...+.+++||++|++.+..++..+++++|++|
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999865  6888999999999988888876544799999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|..+..|+..+....     .++|+|||+||+|+.... .+...++..++..+++ .|++|||++|.||+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  153 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADKA-EVTDAQAQAFAQANQL-KFFKTSALRGVGYE  153 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccccccc-CCCHHHHHHHHHHcCC-eEEEEeCCCCCChH
Confidence            9999999999999999999988642     458999999999997654 5666667777777774 79999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         617 DAAKTLVQKI  626 (663)
Q Consensus       617 ELFe~IIr~I  626 (663)
                      ++|++|++.+
T Consensus       154 ~l~~~l~~~~  163 (164)
T cd04101         154 EPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.96  E-value=2.6e-27  Score=217.32  Aligned_cols=163  Identities=38%  Similarity=0.728  Sum_probs=148.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|.+..+...+.++++.++....+.+++. .+.+++||++|+++|..++..+++++|++|+|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK-RVKLQIWDTAGQERFRSITSSYYRGAVGALLV   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence            59999999999999999999999998889999999998888888776 67899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+..+.    ..++|+++|+||+|+...+ .+..+.+..++..+++ .|+++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~l~~~~~~~----~~~~pivvv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l  153 (164)
T smart00175       80 YDITNRESFENLKNWLKELREYA----DPNVVIMLVGNKSDLEDQR-QVSREEAEAFAEEHGL-PFFETSAKTNTNVEEA  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEEchhccccc-CCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999999999999999988652    2579999999999987654 5677888899988885 7999999999999999


Q ss_pred             HHHHHHHHHh
Q psy4094         619 AKTLVQKILE  628 (663)
Q Consensus       619 Fe~IIr~Ile  628 (663)
                      |++|++++.+
T Consensus       154 ~~~i~~~~~~  163 (164)
T smart00175      154 FEELAREILK  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

Rab GTPases are implicated in vesicle trafficking.

>cd01892 Miro2 Miro2 subfamily

Probab=99.95  E-value=1.1e-27  Score=226.89  Aligned_cols=165  Identities=18%  Similarity=0.246  Sum_probs=144.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +..+||+|||++|||||||+++|+++.|. ..|.+|++.++....+.+++. .+.+++||++|++.+..++..+|+++|+
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ-EKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe-EEEEEEEecCCcccccccchhhhhcCCE
Confidence            35699999999999999999999999998 889999999988888888876 6889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..      ..++|+|+|+||+|+...+ .+...++.+++..+++..++++||++|.|
T Consensus        81 ~llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T cd01892          81 ACLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQQ-QRYEVQPDEFCRKLGLPPPLHFSSKLGDS  153 (169)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEcccccccc-cccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence            9999999999999999999886642      2369999999999996544 33344567788888865579999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy4094         615 IDDAAKTLVQKILE  628 (663)
Q Consensus       615 VeELFe~IIr~Ile  628 (663)
                      ++++|+.|++.++.
T Consensus       154 v~~lf~~l~~~~~~  167 (169)
T cd01892         154 SNELFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=1.8e-27  Score=234.73  Aligned_cols=158  Identities=34%  Similarity=0.569  Sum_probs=140.7

Q ss_pred             EeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC
Q psy4094         464 IGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR  543 (663)
Q Consensus       464 LGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd  543 (663)
                      ||+.|||||||+++|+.+.|...+.+|+|.++....+.+++. .+.|.||||+|+++|+.++..||+++|++|+|||+++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~-~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~   79 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA   79 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE-EEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence            699999999999999999998899999999999888888875 7999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Q psy4094         544 AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLV  623 (663)
Q Consensus       544 ~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~II  623 (663)
                      +.+|+.+..|+..+..++     .++|+||||||+|+...  .+..+. ..++...++ .||+|||++|.||+++|.+|+
T Consensus        80 ~~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~--~v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       80 RVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDR--KVKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             hHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999998753     46999999999999643  344444 467777774 799999999999999999999


Q ss_pred             HHHHhhhh
Q psy4094         624 QKILENDK  631 (663)
Q Consensus       624 r~Ile~~k  631 (663)
                      +.+....+
T Consensus       151 ~~i~~~~~  158 (200)
T smart00176      151 RKLIGDPN  158 (200)
T ss_pred             HHHHhccc
Confidence            99977644

Ran is involved in the active transport of proteins through nuclear pores.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=1.9e-27  Score=224.31  Aligned_cols=156  Identities=19%  Similarity=0.301  Sum_probs=132.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||||+.+|+.+.|...+.++ +.+| ...+.+++. .+.++|||++|++.     ..+++++|++|+|
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~-~~~l~i~D~~g~~~-----~~~~~~~~~~ilv   72 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQ-SHLLLIRDEGGAPD-----AQFASWVDAVIFV   72 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCE-EEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence            58999999999999999999999888776554 3344 467888876 78899999999975     3577899999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ||++++.+|+++..|+..+..+.   ...++|+||||||+|+.. ..+.+..+++.++++.++.+.|+||||++|+||++
T Consensus        73 ~d~~~~~sf~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~  149 (158)
T cd04103          73 FSLENEASFQTVYNLYHQLSSYR---NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVER  149 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence            99999999999999999998653   235689999999999863 22368888899999887545899999999999999


Q ss_pred             HHHHHHHH
Q psy4094         618 AAKTLVQK  625 (663)
Q Consensus       618 LFe~IIr~  625 (663)
                      +|..+++.
T Consensus       150 ~f~~~~~~  157 (158)
T cd04103         150 VFQEAAQK  157 (158)
T ss_pred             HHHHHHhh
Confidence            99999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=1.6e-27  Score=233.59  Aligned_cols=158  Identities=20%  Similarity=0.289  Sum_probs=131.2

Q ss_pred             eEEEEEeCCCCCHHHHHH-HHHhC-----CCCCccccceee-eceeEE--------EecCCceeEEEEEEeCCCccchhh
Q psy4094         459 YKILVIGELGAGKTSIIK-RYVHQ-----FFSPHYRATIGV-DFALKV--------LSWDHETIIRLQLWDIAGQERFGN  523 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLIn-rLlg~-----~fsee~~~Tigi-Df~~kt--------V~vdge~~vkLqIwDTpGQErfrs  523 (663)
                      +||+|||+.|||||||+. ++.++     .|...|.+|++. +.+...        +.+++. .+.|+||||+|+++  .
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~-~v~l~iwDTaG~~~--~   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGV-SVSLRLWDTFGDHD--K   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCE-EEEEEEEeCCCChh--h
Confidence            799999999999999995 66544     345678899873 433322        245665 79999999999975  3


Q ss_pred             hHHHHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC------------------C
Q psy4094         524 MTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE------------------G  584 (663)
Q Consensus       524 l~~~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de------------------r  584 (663)
                      +...+|++||++|+|||++++.||+.+. .|+..+..++     .++|+||||||+||.+.                  .
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~  154 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA  154 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence            5567899999999999999999999997 6999887642     46899999999999641                  2


Q ss_pred             CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         585 IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       585 ~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +.+..++++++|+.+++ .|+||||++|+||+++|+.++++
T Consensus       155 ~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         155 DILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            47889999999999996 89999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=5.2e-27  Score=215.66  Aligned_cols=160  Identities=35%  Similarity=0.598  Sum_probs=144.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|++..+...+.++.+.++....+.+++. .+.+++||++|+++|..++..+++.+|++|+|
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v   79 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK-TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999999899999999999999988875 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+...    ...++|+|||+||+|+...+ .+..++...+++..+ +.++++||+++.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  153 (161)
T cd01861          80 YDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL  153 (161)
T ss_pred             EECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEEChhccccC-ccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence            9999999999999999988753    22369999999999996544 567788888888888 47999999999999999


Q ss_pred             HHHHHHH
Q psy4094         619 AKTLVQK  625 (663)
Q Consensus       619 Fe~IIr~  625 (663)
                      |.+|++.
T Consensus       154 ~~~i~~~  160 (161)
T cd01861         154 FRKIASA  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0083|consensus

Probab=99.95  E-value=6.1e-29  Score=232.83  Aligned_cols=162  Identities=29%  Similarity=0.579  Sum_probs=150.6

Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094         462 LVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD  540 (663)
Q Consensus       462 VVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD  540 (663)
                      +++|++++|||+|+-||..+.|. .....|+|+||..+.+.+++. .++|+||||+||++|++....||+.||+.+++||
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~-kvklqiwdtagqerfrsvt~ayyrda~allllyd   79 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDK-KVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD   79 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCc-EEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence            47999999999999999988776 578899999999999999997 8999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHH
Q psy4094         541 VTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       541 VTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe  620 (663)
                      ++|+.||++++.|+.+|.++.    ...+.++|+|||+|+..+| .+..++++.++..+++ +|+|+||++|.||+..|.
T Consensus        80 iankasfdn~~~wlsei~ey~----k~~v~l~llgnk~d~a~er-~v~~ddg~kla~~y~i-pfmetsaktg~nvd~af~  153 (192)
T KOG0083|consen   80 IANKASFDNCQAWLSEIHEYA----KEAVALMLLGNKCDLAHER-AVKRDDGEKLAEAYGI-PFMETSAKTGFNVDLAFL  153 (192)
T ss_pred             cccchhHHHHHHHHHHHHHHH----HhhHhHhhhccccccchhh-ccccchHHHHHHHHCC-CceeccccccccHhHHHH
Confidence            999999999999999999873    4568899999999998888 7888999999999995 899999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4094         621 TLVQKILEND  630 (663)
Q Consensus       621 ~IIr~Ile~~  630 (663)
                      .|++.+....
T Consensus       154 ~ia~~l~k~~  163 (192)
T KOG0083|consen  154 AIAEELKKLK  163 (192)
T ss_pred             HHHHHHHHhc
Confidence            9999887654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.95  E-value=4e-27  Score=221.95  Aligned_cols=159  Identities=23%  Similarity=0.379  Sum_probs=139.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+.+|+++.|..++.+|+. +++...+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v   78 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGK-PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC   78 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCE-EEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence            5899999999999999999999999988888874 566667777765 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.+|+.+. .|+..+...     ..++|+||||||+|+...           .+.+..+++..++..++...|++
T Consensus        79 ~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  153 (173)
T cd04130          79 FSVVNPSSFQNISEKWIPEIRKH-----NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE  153 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence            9999999999985 798888743     246899999999998642           23678889999999998768999


Q ss_pred             EeCCCCcCHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr  624 (663)
                      |||++|+||+++|+.++-
T Consensus       154 ~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         154 CSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             EeCCCCCCHHHHHHHHHh
Confidence            999999999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.95  E-value=4.8e-27  Score=219.43  Aligned_cols=162  Identities=22%  Similarity=0.329  Sum_probs=141.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+.+.|...+.++++. .+...+.+++. .+.+.|||++|+++|..++..+++++|++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   78 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGK-QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   78 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCE-EEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence            58999999999999999999999998888888763 44556677765 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.+|+.+. .|+..+...     ..++|+||||||+|+.++.           ..+..+++..+++.+++..|++
T Consensus        79 ~~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  153 (174)
T cd04135          79 FSVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE  153 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999996 688888743     3579999999999986532           2567788999999999778999


Q ss_pred             EeCCCCcCHHHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Il  627 (663)
                      |||++|.||+++|+.+++.++
T Consensus       154 ~Sa~~~~gi~~~f~~~~~~~~  174 (174)
T cd04135         154 CSALTQKGLKTVFDEAILAIL  174 (174)
T ss_pred             ecCCcCCCHHHHHHHHHHHhC
Confidence            999999999999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=1.1e-26  Score=213.84  Aligned_cols=161  Identities=29%  Similarity=0.596  Sum_probs=146.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++. .+.+.|||++|+++|..++..+++++|++|||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDT-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            79999999999999999999999998888999998888888888876 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||+++..+|+.+..|+..+....    ..++|+|+|+||+|+...+ .+..+++..++..++ +.++++||++|.|+.++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNA----SPNIIIALVGNKADLESKR-QVSTEEAQEYADENG-LLFFETSAKTGENVNEL  154 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccC-cCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999999988642    2579999999999987654 567788889999888 58999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |++|++.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd01860         155 FTEIAKKL  162 (163)
T ss_pred             HHHHHHHh
Confidence            99999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=1.2e-26  Score=217.41  Aligned_cols=163  Identities=28%  Similarity=0.455  Sum_probs=144.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|.+|||||||+++|.++.+...+.++++.. ..+.+.+++. .+.+++||++|+++|..++..+++.++++|||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGR-QCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCE-EEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            799999999999999999999999988888888754 4667777765 68999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|...+....   ...++|+|+|+||+|+...+ .+..+++..+++.++.++|+++||++|.|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIK---DSDNVPMVLVGNKADLEDDR-QVSREDGVSLSQQWGNVPFYETSARKRTNVDEV  155 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEEChhccccC-ccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence            99999999999999999887642   23579999999999997665 567778888888888668999999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         619 AKTLVQKIL  627 (663)
Q Consensus       619 Fe~IIr~Il  627 (663)
                      |.+|+.+++
T Consensus       156 f~~i~~~~~  164 (168)
T cd04177         156 FIDLVRQII  164 (168)
T ss_pred             HHHHHHHHh
Confidence            999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=8.5e-27  Score=228.50  Aligned_cols=171  Identities=20%  Similarity=0.291  Sum_probs=142.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYYK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~r  530 (663)
                      +||+|+|++|||||||+++|+++.|...+.++++.+++...+.+++. .+.++||||+|+..|.        .....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~-~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~   79 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR-VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE-EEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence            58999999999999999999999999889999988887777777775 6899999999976542        12345678


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      ++|++|||||++++.+|+.+..|+..+..+.. ....++|+||||||+|+...+ .+..++++.++.....++||+|||+
T Consensus        80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sak  157 (198)
T cd04142          80 NSRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRHR-FAPRHVLSVLVRKSWKCGYLECSAK  157 (198)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECccccccc-cccHHHHHHHHHHhcCCcEEEecCC
Confidence            99999999999999999999999998876431 123569999999999997765 5666777777654433589999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhhhh
Q psy4094         611 DNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~~k~  632 (663)
                      +|.||+++|+.+++.++.+.+.
T Consensus       158 ~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         158 YNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCCHHHHHHHHHHHhhccCCC
Confidence            9999999999999999876553

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.95  E-value=8.6e-27  Score=236.91  Aligned_cols=165  Identities=25%  Similarity=0.447  Sum_probs=143.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||||+++|+++.|...|.+|++ ++..+.+.+++. .+.|+||||+|++.|..++..++..+|++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~-~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV   78 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGE-VYQLDILDTSGNHPFPAMRRLSILTGDVFILV   78 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCE-EEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            5899999999999999999999999888999987 777788888876 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCC-----CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTL-----PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~-----~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ||++++.+|+.+..|+.++......     ....++|+|||+||+|+...+ .+..+++.+++.....+.|++|||++|.
T Consensus        79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~-~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR-EVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc-ccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            9999999999999999988754110     123579999999999997655 6778888888875544579999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKI  626 (663)
Q Consensus       614 NVeELFe~IIr~I  626 (663)
                      ||+++|++|++.+
T Consensus       158 gI~elf~~L~~~~  170 (247)
T cd04143         158 NLDEMFRALFSLA  170 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04123 Rab21 Rab21 subfamily

Probab=99.95  E-value=2.2e-26  Score=209.82  Aligned_cols=161  Identities=33%  Similarity=0.575  Sum_probs=143.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|.+|||||||+++|+++.+...+.++++.++....+.+.+. .+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGK-RIDLAIWDTAGQERYHALGPIYYRDADGAILV   79 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCE-EEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence            59999999999999999999999988888888887877777777664 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+.....    .++|+|+|+||+|+...+ .+..+++.+++..+++ .+++|||++++|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~  153 (162)
T cd04123          80 YDITDADSFQKVKKWIKELKQMRG----NNISLVIVGNKIDLERQR-VVSKSEAEEYAKSVGA-KHFETSAKTGKGIEEL  153 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            999999999999999999986532    379999999999998655 5667888888888885 7999999999999999


Q ss_pred             HHHHHHHH
Q psy4094         619 AKTLVQKI  626 (663)
Q Consensus       619 Fe~IIr~I  626 (663)
                      |++|++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04123         154 FLSLAKRM  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.95  E-value=1.7e-26  Score=214.84  Aligned_cols=162  Identities=23%  Similarity=0.365  Sum_probs=137.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHHHHHhcCcEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~~~~r~ADgaILV  538 (663)
                      ||+|+|++|||||||+++|+.+.+...+.++++..+ ...+.+++. .+.++|||++|+++ +...+..+++.+|++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v   78 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGE-QVSLEILDTAGQQQADTEQLERSIRWADGFVLV   78 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCE-EEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence            699999999999999999999888888888876444 455667765 68899999999986 355678899999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC-cCHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN-INIDD  617 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG-eNVeE  617 (663)
                      ||++++.+|+.+..|+..+.....  ...++|+||||||+|+...+ .+..+++..++..+++ +||+|||++| .||++
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          79 YSITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHYR-QVSTEEGEKLASELGC-LFFEVSAAEDYDGVHS  154 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHhC-ccCHHHHHHHHHHcCC-EEEEeCCCCCchhHHH
Confidence            999999999999999998886421  13469999999999997655 6778888999999884 8999999999 59999


Q ss_pred             HHHHHHHHHH
Q psy4094         618 AAKTLVQKIL  627 (663)
Q Consensus       618 LFe~IIr~Il  627 (663)
                      +|.+|++.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.95  E-value=2.5e-26  Score=228.50  Aligned_cols=166  Identities=20%  Similarity=0.255  Sum_probs=143.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh-cCcEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK-EAVGAF  536 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r-~ADgaI  536 (663)
                      +||+|+|++|||||||+++|+.+.+. ..+.++++.+++.+.+.+++. .+.+.|||++|++  ..+...+++ ++|++|
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii   77 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGE-ESTLVVIDHWEQE--MWTEDSCMQYQGDAFV   77 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCE-EEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence            58999999999999999999988886 777888877888888888876 7899999999998  334556677 999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|+||+
T Consensus        78 lV~d~td~~S~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~  152 (221)
T cd04148          78 VVYSVTDRSSFERASELRIQLRRNR---QLEDRPIILVGNKSDLARSR-EVSVQEGRACAVVFDC-KFIETSAGLQHNVD  152 (221)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhccccc-eecHHHHHHHHHHcCC-eEEEecCCCCCCHH
Confidence            9999999999999999999887642   23579999999999997765 6777888889988885 79999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy4094         617 DAAKTLVQKILENDKV  632 (663)
Q Consensus       617 ELFe~IIr~Ile~~k~  632 (663)
                      ++|++|++.+......
T Consensus       153 ~l~~~l~~~~~~~~~~  168 (221)
T cd04148         153 ELLEGIVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999999755543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.94  E-value=3.4e-26  Score=213.93  Aligned_cols=161  Identities=20%  Similarity=0.403  Sum_probs=138.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      .||+|+|+.|||||||+++|+.+.|...+.++++..+. ..+.+++. .+.+.||||+|+++|..++..++.++|++++|
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGK-QVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCE-EEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            59999999999999999999999999889999886554 45666665 68899999999999999988899999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ||++++.+|+.+. .|+..+...     ..++|+|||+||+|+....           ..+...++++++..++...|++
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~  154 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME  154 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence            9999999999985 688888753     2468999999999986421           2355678889999888778999


Q ss_pred             EeCCCCcCHHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~I  626 (663)
                      |||++|.||+++|.+|++.+
T Consensus       155 ~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         155 CSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             eccccCcCHHHHHHHHHHHh
Confidence            99999999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01863 Rab18 Rab18 subfamily

Probab=99.94  E-value=6.8e-26  Score=208.75  Aligned_cols=160  Identities=40%  Similarity=0.670  Sum_probs=143.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|.+..+...+.++++.++....+.+++. .+.+++||++|++.|..++..+++++|++|+|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGK-KVKLAIWDTAGQERFRTLTSSYYRGAQGVILV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCE-EEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence            58999999999999999999999988888999998888887777765 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+..+..   ..++|+++|+||+|+...  .+..+++..++..+++ +|+++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~iv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  153 (161)
T cd01863          80 YDVTRRDTFTNLETWLNELETYST---NNDIVKMLVGNKIDKENR--EVTREEGLKFARKHNM-LFIETSAKTRDGVQQA  153 (161)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhCC---CCCCcEEEEEECCccccc--ccCHHHHHHHHHHcCC-EEEEEecCCCCCHHHH
Confidence            999999999999999998887542   457999999999999732  4567888899998875 8999999999999999


Q ss_pred             HHHHHHH
Q psy4094         619 AKTLVQK  625 (663)
Q Consensus       619 Fe~IIr~  625 (663)
                      |+++++.
T Consensus       154 ~~~~~~~  160 (161)
T cd01863         154 FEELVEK  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=1.1e-25  Score=208.99  Aligned_cols=164  Identities=34%  Similarity=0.656  Sum_probs=144.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|..+.+...+.++++.++....+.+.+. .+.+.+||++|++.|...+..++..+|++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE-KIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45689999999999999999999988888888899998988888888876 67899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+....    ..++|+|+|+||+|+...+ .+..+....+..... ..+++|||++|.|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~~~i~v~NK~D~~~~~-~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv  157 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYA----NNKVITILVGNKIDLAERR-EVSQQRAEEFSDAQD-MYYLETSAKESDNV  157 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-ccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence            99999999999999999999887542    3468999999999997655 566666777777666 57999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4094         616 DDAAKTLVQKI  626 (663)
Q Consensus       616 eELFe~IIr~I  626 (663)
                      +++|++|++.+
T Consensus       158 ~~l~~~i~~~~  168 (169)
T cd04114         158 EKLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0395|consensus

Probab=99.94  E-value=2.3e-26  Score=227.29  Aligned_cols=167  Identities=28%  Similarity=0.476  Sum_probs=154.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|.+|||||+|+.+|+.+.|.+.|.+|+. +++.+.+.++++ .+.|.|+||+|++.|..+...|++++|++++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~-~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGE-VCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCE-EEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            48999999999999999999999999999999999 888999999976 8999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ||+++++.||+.+..|++.|.+.   .....+|+||||||+||...| .|..+++++++...++ .|+|+||+.++||++
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~---~~~~~~PivlVGNK~Dl~~~R-~V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~  155 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRV---KGRDDVPIILVGNKCDLERER-QVSEEEGKALARSWGC-AFIETSAKLNYNVDE  155 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh---hCcCCCCEEEEEEcccchhcc-ccCHHHHHHHHHhcCC-cEEEeeccCCcCHHH
Confidence            99999999999999999999542   344569999999999999887 8999999999999997 599999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy4094         618 AAKTLVQKILENDK  631 (663)
Q Consensus       618 LFe~IIr~Ile~~k  631 (663)
                      +|..|++.+...+.
T Consensus       156 ~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  156 VFYELVREIRLPRE  169 (196)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999998877333

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.94  E-value=2.4e-25  Score=203.81  Aligned_cols=162  Identities=26%  Similarity=0.461  Sum_probs=140.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+++|.+|||||||+++|+.+.+...+.++++.. ..+.+.+++. .+.+++||++|+++|..++..+++.++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   78 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGE-DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCE-EEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence            599999999999999999999999888888887744 4455666665 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|..+..|+..+.....   ..++|+|+|+||+|+...+ .....+...++..+++ ++|++||++|.|++++
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  153 (164)
T cd04139          79 FSITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDKR-QVSSEEAANLARQWGV-PYVETSAKTRQNVEKA  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEcccccccc-ccCHHHHHHHHHHhCC-eEEEeeCCCCCCHHHH
Confidence            999999999999999998886432   3569999999999997643 4566777888888875 8999999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         619 AKTLVQKIL  627 (663)
Q Consensus       619 Fe~IIr~Il  627 (663)
                      |++|++.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T cd04139         154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHH
Confidence            999998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04129 Rho2 Rho2 subfamily

Probab=99.94  E-value=1.9e-25  Score=214.46  Aligned_cols=166  Identities=23%  Similarity=0.362  Sum_probs=141.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      .||+|+|+.|||||||+++|..+.+...+.++++..+. ..+.+++. .+.+.+||++|++.|......+++++|++|+|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGK-PVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCE-EEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            59999999999999999999988888888888765554 45566665 67899999999999988888889999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC---------CCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE---------GIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de---------r~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ||+++..+|+.+. .|+..+..+.     .++|+||||||+|+...         ...+..+++..+++.+++..||+||
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S  154 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS  154 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence            9999999999997 6999887542     35999999999998542         2256677889999999977899999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      |++|.||+++|+++++.++..++
T Consensus       155 a~~~~~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         155 ALTGEGVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccC
Confidence            99999999999999998866443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00154 Rab Rab family

Probab=99.94  E-value=2.4e-25  Score=199.85  Aligned_cols=159  Identities=38%  Similarity=0.704  Sum_probs=142.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++. .+.+.+||++|+..+..++..+++++|++|+|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v   79 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGK-TVKLQIWDTAGQERFRSITPSYYRGAHGAILV   79 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCE-EEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999889999999999988888765 68899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+++.+..|+..+....    ..++|+++|+||+|+.... ....+++.+++..++ .+|+++||+++.|++++
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~  153 (159)
T cd00154          80 YDITNRESFENLDKWLKELKEYA----PENIPIILVGNKIDLEDQR-QVSTEEAQQFAKENG-LLFFETSAKTGENVEEL  153 (159)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEcccccccc-cccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence            99999999999999999988642    2569999999999996333 567888999998877 48999999999999999


Q ss_pred             HHHHHH
Q psy4094         619 AKTLVQ  624 (663)
Q Consensus       619 Fe~IIr  624 (663)
                      |.+|++
T Consensus       154 ~~~i~~  159 (159)
T cd00154         154 FQSLAE  159 (159)
T ss_pred             HHHHhC
Confidence            999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04158 ARD1 ARD1 subfamily

Probab=99.93  E-value=2.2e-25  Score=210.19  Aligned_cols=160  Identities=18%  Similarity=0.307  Sum_probs=132.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|+.|||||||+++|.++.+.. +.+|++.++.  .+.+.   .+.+++||++|+++++.++..+++++|++|+||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~---~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~   74 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK---NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV   74 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC---CEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence            68999999999999999999987754 7888887664  33333   478999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-----CeEEEEeCCCCcC
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-----SGWFETSAKDNIN  614 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-----i~ffEtSAKtGeN  614 (663)
                      |++++.+|+.+..|+..+...   ....+.|+|||+||+|+.+   .+..+++.+++...+.     ..|++|||++|.|
T Consensus        75 D~s~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  148 (169)
T cd04158          75 DSSHRDRVSEAHSELAKLLTE---KELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG  148 (169)
T ss_pred             eCCcHHHHHHHHHHHHHHhcC---hhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence            999999999999998888642   2234589999999999965   3567777777754331     2588999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|+||++.++....
T Consensus       149 v~~~f~~l~~~~~~~~~  165 (169)
T cd04158         149 LYEGLDWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            99999999998877543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.93  E-value=4.6e-25  Score=211.48  Aligned_cols=168  Identities=20%  Similarity=0.298  Sum_probs=136.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+++|++|||||||+++|+.+.+... .+|+|.++....+.+.+...+.|.+|||+|+++|+.+|..++++||++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            48999999999999999999998887654 67888777666666543335889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-----CCeEEEEeCCCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-----FSGWFETSAKDN  612 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-----~i~ffEtSAKtG  612 (663)
                      |||+++..+++.+..|+..+.....   ..++|+|||+||+|+...   +..+++.+++....     .+.+++|||++|
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~---~~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  155 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSE---NQGVPVLVLANKQDLPNA---LSVSEVEKLLALHELSASTPWHVQPACAIIG  155 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhh---cCCCcEEEEEECcCcccc---CCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence            9999999999999999888775432   246899999999998652   34455555553221     135889999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhh
Q psy4094         613 INIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k~  632 (663)
                      .||+++|++|++.+.+.++.
T Consensus       156 ~gi~~l~~~l~~~l~~~~~~  175 (183)
T cd04152         156 EGLQEGLEKLYEMILKRRKM  175 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999776653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.93  E-value=2.7e-25  Score=210.76  Aligned_cols=155  Identities=20%  Similarity=0.283  Sum_probs=126.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|..+.+. .+.+|+|.++.  .+...   .+.|+|||++|+++|+.++..+|++||++||
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEEC---CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            489999999999999999999987775 46788887664  33332   4789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGe  613 (663)
                      |||+++..+|+.+..|+..+...   ....++|+|||+||+|+...   +..+++..++...    ....+++|||++|+
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~  156 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIIND---REMRDALLLVFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGD  156 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcC---HhhcCCcEEEEEECcCCccC---CCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence            99999999999998887766532   12356899999999999652   4567777765421    11368999999999


Q ss_pred             CHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQ  624 (663)
Q Consensus       614 NVeELFe~IIr  624 (663)
                      ||+++|.||.+
T Consensus       157 gv~~~~~~l~~  167 (168)
T cd04149         157 GLYEGLTWLSS  167 (168)
T ss_pred             ChHHHHHHHhc
Confidence            99999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.93  E-value=6.4e-25  Score=211.42  Aligned_cols=161  Identities=21%  Similarity=0.275  Sum_probs=127.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|..+.+. .+.+|+|.++.  .+...   .+.++|||++||++|+.+|..||+++|++|
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~---~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC---CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            3489999999999999999999987775 56788887653  34333   378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKDN  612 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKtG  612 (663)
                      +|||+++..+|..+..|+..+..   .....++|+|||+||+|+....   ..+++...+.....    ..+++|||++|
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~---~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g  163 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSG  163 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhc---CHhhCCCCEEEEEECCCCCCCC---CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence            99999999999998887776643   1123569999999999997632   34444433322211    13568999999


Q ss_pred             cCHHHHHHHHHHHHHhh
Q psy4094         613 INIDDAAKTLVQKILEN  629 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~  629 (663)
                      +||+++|+||++++..+
T Consensus       164 ~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        164 EGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            99999999999987653

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.93  E-value=5.9e-25  Score=206.02  Aligned_cols=154  Identities=21%  Similarity=0.291  Sum_probs=121.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+++|..+.+. .+.+|+|.++.  .+...   .+.+.+||++|+++|+.++..||++||++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v   74 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999888776 57888886653  33332   47899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCcC
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNIN  614 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGeN  614 (663)
                      ||++++.+|+.+..|+..+...   ....++|++||+||+|+...   +..+++...+...    ....+++|||++|+|
T Consensus        75 ~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g  148 (159)
T cd04150          75 VDSNDRERIGEAREELQRMLNE---DELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDG  148 (159)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhc---HHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence            9999999999998887766532   12245899999999999653   2333333332211    113578999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         615 IDDAAKTLVQ  624 (663)
Q Consensus       615 VeELFe~IIr  624 (663)
                      |+++|+||.+
T Consensus       149 v~~~~~~l~~  158 (159)
T cd04150         149 LYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.93  E-value=7.4e-25  Score=208.66  Aligned_cols=157  Identities=22%  Similarity=0.288  Sum_probs=125.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|..+.+. .+.+|++.++..  +...   .+.++|||++|+++++.+|..||++||++|+
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~---~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK---NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC---CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            489999999999999999999877774 577888877643  3332   3789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtGe  613 (663)
                      |||++++.+|+.+..|+..+...   ....++|++||+||+|+.+..   ..+++...+....    .+.|+++||++|.
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNE---DELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGD  160 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhC---HhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence            99999999999999888877532   123468999999999997543   3334333332111    1247789999999


Q ss_pred             CHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKI  626 (663)
Q Consensus       614 NVeELFe~IIr~I  626 (663)
                      ||+++|+||.+++
T Consensus       161 gv~e~~~~l~~~~  173 (175)
T smart00177      161 GLYEGLTWLSNNL  173 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998875

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00876 Ras Ras family

Probab=99.93  E-value=1.2e-24  Score=198.02  Aligned_cols=160  Identities=34%  Similarity=0.544  Sum_probs=140.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|++|||||||+++|++..+...+.++.+ +.....+.+++. .+.+++||++|++.+..++..+++.+|++|+||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   78 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGE-TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY   78 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence            699999999999999999999888888888877 556666766654 688999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF  619 (663)
                      |+++..++..+..|+..+.....   ..++|+++|+||+|+...+ .+..+++.+++..++ .+|+++||+++.|++++|
T Consensus        79 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876          79 SITDRESFEEIKGYREQILRVKD---DEDIPIVLVGNKCDLENER-QVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF  153 (160)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECCcccccc-eecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence            99999999999999988886432   2579999999999997744 567788999999888 489999999999999999


Q ss_pred             HHHHHHH
Q psy4094         620 KTLVQKI  626 (663)
Q Consensus       620 e~IIr~I  626 (663)
                      ++|++++
T Consensus       154 ~~l~~~i  160 (160)
T cd00876         154 KLLVREI  160 (160)
T ss_pred             HHHHhhC
Confidence            9998764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.93  E-value=1.2e-24  Score=211.08  Aligned_cols=164  Identities=24%  Similarity=0.385  Sum_probs=137.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|+.|||||||+++|+++.+...+.+++. ++....+.+.+. .+.++|||++|+..|..++..++..+|++||||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~   78 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGV-SLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY   78 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCE-EEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence            699999999999999999999999888888875 566667777764 688999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF  619 (663)
                      |++++.+|+.+..|+..+....   ...++|+|||+||+|+......+..+++.+.+.......|+++||++|.||+++|
T Consensus        79 d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147          79 AVDDPESFEEVERLREEILEVK---EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence            9999999999999998887653   2346999999999999663224555555555542222479999999999999999


Q ss_pred             HHHHHHHHh
Q psy4094         620 KTLVQKILE  628 (663)
Q Consensus       620 e~IIr~Ile  628 (663)
                      ++|++.+..
T Consensus       156 ~~l~~~~~~  164 (198)
T cd04147         156 KELLRQANL  164 (198)
T ss_pred             HHHHHHhhc
Confidence            999998753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.93  E-value=1.2e-24  Score=215.54  Aligned_cols=165  Identities=21%  Similarity=0.374  Sum_probs=134.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC----ceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH----ETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg----e~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +||+|+|+.|||||||+++|+++.|...+.+|+|.++..+.+.+++    +..+.|+|||++|+++|+.++..||+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999999999999888888777742    236899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCC---------------CCCCCCcEEEEEeCCCCCCCCCCCCHH----HHHHH
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTL---------------PDGNPIPCVLLANKCDQPKEGIANNPA----KIDEF  595 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~---------------~~~~~IPIILVGNKsDL~der~~Vs~e----ei~ql  595 (663)
                      +|||||++++.||+++..|+.++......               ....++||||||||+|+.+++ .+..+    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhH
Confidence            99999999999999999999999764211               123569999999999997765 33333    24456


Q ss_pred             HHHcCCCeEEEEeCCCCc----------CHHHHHHHHHHH
Q psy4094         596 IKEHNFSGWFETSAKDNI----------NIDDAAKTLVQK  625 (663)
Q Consensus       596 ak~~g~i~ffEtSAKtGe----------NVeELFe~IIr~  625 (663)
                      +.+.++ +.++.++.++.          .+..+|+.++++
T Consensus       160 a~~~~~-~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (202)
T cd04102         160 AEQGNA-EEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK  198 (202)
T ss_pred             HHhcCC-ceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence            777885 78888888653          345555555543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.93  E-value=2.6e-24  Score=210.89  Aligned_cols=166  Identities=30%  Similarity=0.509  Sum_probs=144.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|+.+.+...|.+|++.++....+..+++ .+.+++||++|+++|..++..++++++++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCG-PICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCe-EEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            34589999999999999999999999999999999999998888877765 68999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|..+..|+..+...+     .++|+++||||+|+.+..  +..+ ...++...++ .|+++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~~--~~~~-~~~~~~~~~~-~~~e~Sa~~~~~v  156 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDRQ--VKAR-QITFHRKKNL-QYYDISAKSNYNF  156 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCcccc--CCHH-HHHHHHHcCC-EEEEEeCCCCCCH
Confidence            99999999999999999999988642     468999999999986532  3333 3456777774 7999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|.+|++.++.+..
T Consensus       157 ~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        157 EKPFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999999876544

>cd00157 Rho Rho (Ras homology) family

Probab=99.93  E-value=1.4e-24  Score=200.91  Aligned_cols=159  Identities=25%  Similarity=0.443  Sum_probs=134.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.+++...+ ...+.+++. .+.+++||++|+++|..++..+++.+|++++|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v   78 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGK-QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC   78 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCE-EEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence            5899999999999999999999998777888876444 445555655 68999999999999988899999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHHHcCCCeEEEE
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI----------ANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~----------~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      ||++++.+|..+. .|+..+..+     ..++|+|||+||+|+...+.          .+..+++..++..+++..|+++
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  153 (171)
T cd00157          79 FSVDSPSSFENVKTKWIPEIRHY-----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC  153 (171)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence            9999999998865 587777643     23799999999999876541          3457788889999987689999


Q ss_pred             eCCCCcCHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr  624 (663)
                      ||++|+|++++|++|++
T Consensus       154 Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         154 SALTQEGVKEVFEEAIR  170 (171)
T ss_pred             ecCCCCCHHHHHHHHhh
Confidence            99999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0393|consensus

Probab=99.93  E-value=9.8e-26  Score=223.49  Aligned_cols=168  Identities=23%  Similarity=0.361  Sum_probs=152.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecC-CceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ..+|++|||++++|||+|+..|..+.|.+.|.+|+. |-+...+.++ +. .+.|.+|||+||++|..++...|.++|++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~-~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGK-PVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCC-EEEEeeeecCCCcccccccccCCCCCCEE
Confidence            348999999999999999999999999999999998 6666778885 65 89999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCe
Q psy4094         536 FIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSG  603 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~  603 (663)
                      |+||++.++.||+++. .|+.+++.+|     +++|+||||+|.||.++.           .-+..+++..+++..|...
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~  155 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-----PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK  155 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence            9999999999999975 9999999876     679999999999997421           2578899999999999999


Q ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         604 WFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       604 ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      |+||||++..|+.++|+..++.++...+
T Consensus       156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  156 YLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999999999987544

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.92  E-value=3.8e-24  Score=201.76  Aligned_cols=165  Identities=25%  Similarity=0.414  Sum_probs=140.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      .||+|+|++|||||||+++|.+..+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..++..++++|+|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQ-DYHLEIVDTAGQDEYSILPQKYSIGIHGYILV   79 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCE-EEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence            6999999999999999999999888877888776544 455666654 57899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||+++..+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++..++..+++ +++++||+++.|+.++
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l  154 (180)
T cd04137          80 YSVTSRKSFEVVKVIYDKILDML---GKESVPIVLVGNKSDLHTQR-QVSTEEGKELAESWGA-AFLESSARENENVEEA  154 (180)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEchhhhhcC-ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence            99999999999999988877542   23568999999999997644 5566677888887774 7999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4094         619 AKTLVQKILEND  630 (663)
Q Consensus       619 Fe~IIr~Ile~~  630 (663)
                      |.+|++.+....
T Consensus       155 ~~~l~~~~~~~~  166 (180)
T cd04137         155 FELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHHHhc
Confidence            999999886543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=2e-24  Score=207.91  Aligned_cols=161  Identities=19%  Similarity=0.268  Sum_probs=126.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|..+.+.. +.+|++.++.  .+...   .+.++|||++|+++++.++..||+++|++|+
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK---NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4899999999999999999998877764 6788886654  33332   4789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtGe  613 (663)
                      |||++++.+|+.+..|+..+..   .....++|+|||+||+|+.+.   +..+++...+....    .+.++++||++|.
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~  164 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLS---EDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ  164 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHh---CHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence            9999999999998877776642   112346899999999998653   23333333222111    1246799999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy4094         614 NIDDAAKTLVQKILEND  630 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~  630 (663)
                      ||+++|++|++.+...+
T Consensus       165 gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        165 GLYEGLDWLSANIKKSM  181 (182)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999887654

>cd04154 Arl2 Arl2 subfamily

Probab=99.92  E-value=2.5e-24  Score=202.96  Aligned_cols=156  Identities=23%  Similarity=0.313  Sum_probs=126.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|.+..+ ..+.+|+|..  ...+.+++   +.+.+||++|++.++.++..+++++|++|
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~---~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG---YKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC---EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            458999999999999999999998744 4567777743  44455542   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDN  612 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtG  612 (663)
                      +|||++++.+|..+..|+..+...   ....++|+|||+||+|+....   ..+++..++...    ..++||+|||++|
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  160 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQE---ERLAGATLLILANKQDLPGAL---SEEEIREALELDKISSHHWRIQPCSAVTG  160 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEECcccccCC---CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence            999999999999998888877542   223579999999999997633   556666665432    2247999999999


Q ss_pred             cCHHHHHHHHHH
Q psy4094         613 INIDDAAKTLVQ  624 (663)
Q Consensus       613 eNVeELFe~IIr  624 (663)
                      .||+++|++|+.
T Consensus       161 ~gi~~l~~~l~~  172 (173)
T cd04154         161 EGLLQGIDWLVD  172 (173)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.92  E-value=5.1e-25  Score=207.75  Aligned_cols=152  Identities=22%  Similarity=0.264  Sum_probs=125.0

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD  540 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD  540 (663)
                      |+|+|+.|||||||+++|+++.+...+.+|+|.++    +.++.. .+.++|||++|+++|+.++..+++++|++|+|||
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeC-CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            79999999999999999999988888999988653    223333 4789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCH----HHHHHHHHHcCCCeEEEEeCCC-----
Q psy4094         541 VTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNP----AKIDEFIKEHNFSGWFETSAKD-----  611 (663)
Q Consensus       541 VTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~----eei~qlak~~g~i~ffEtSAKt-----  611 (663)
                      +++..+|..+..|+..+...     ..++|+|||+||+|+...+ .+..    ..+..+++..+ +.||+|||++     
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~-----~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~  149 (164)
T cd04162          77 SADSERLPLARQELHQLLQH-----PPDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRR-WILQGTSLDDDGSPS  149 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhC-----CCCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChh
Confidence            99999999999998877632     2579999999999997655 1111    12345555556 4789999888     


Q ss_pred             -CcCHHHHHHHHHH
Q psy4094         612 -NINIDDAAKTLVQ  624 (663)
Q Consensus       612 -GeNVeELFe~IIr  624 (663)
                       ++||.++|+.++.
T Consensus       150 ~~~~v~~~~~~~~~  163 (164)
T cd04162         150 RMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHHhc
Confidence             9999999998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.92  E-value=9.4e-25  Score=200.48  Aligned_cols=156  Identities=22%  Similarity=0.298  Sum_probs=121.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC-CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF-FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~-fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +|+|+|++|||||||+++|.+.. +...+.+|+|..+..  +...   .+.+++||++|+++|+.++..+++++|++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   75 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FEKG---NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV   75 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EEEC---CEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence            58999999999999999999875 456778888855432  3222   47899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCcC
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNIN  614 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGeN  614 (663)
                      ||++++.+|..+..|+..+..... ....++|+|||+||+|+....   ..+++.......    ....+|+|||++|.|
T Consensus        76 ~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g  151 (162)
T cd04157          76 IDSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEG  151 (162)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence            999999999999999888764311 123579999999999997643   233333322211    113589999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         615 IDDAAKTLVQ  624 (663)
Q Consensus       615 VeELFe~IIr  624 (663)
                      |+++|++|.+
T Consensus       152 v~~~~~~l~~  161 (162)
T cd04157         152 LDEGVQWLQA  161 (162)
T ss_pred             hHHHHHHHhc
Confidence            9999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01893 Miro1 Miro1 subfamily

Probab=99.92  E-value=5.7e-24  Score=199.26  Aligned_cols=162  Identities=20%  Similarity=0.264  Sum_probs=126.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+++|+++.|...+..+. .++ ...+.+++. .+.++|||++|++.+...+..++..+|++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   77 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPE-RVPTTIVDTSSRPQDRANLAAEIRKANVICLV   77 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCC-eEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence            489999999999999999999998876544332 222 333444444 68999999999999888888889999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHHcC-CCeEEEEeCCCCcCH
Q psy4094         539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN-NPAKIDEFIKEHN-FSGWFETSAKDNINI  615 (663)
Q Consensus       539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V-s~eei~qlak~~g-~i~ffEtSAKtGeNV  615 (663)
                      ||++++.+|+.+. .|+..++.+.     .++|+|||+||+|+.+.+... ..+++..++..+. ...|++|||++|.|+
T Consensus        78 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  152 (166)
T cd01893          78 YSVDRPSTLERIRTKWLPLIRRLG-----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV  152 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence            9999999999985 6888887532     369999999999997655111 1334444444443 247999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy4094         616 DDAAKTLVQKILE  628 (663)
Q Consensus       616 eELFe~IIr~Ile  628 (663)
                      +++|+.+++.++.
T Consensus       153 ~~lf~~~~~~~~~  165 (166)
T cd01893         153 SEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252|consensus

Probab=99.91  E-value=1.8e-25  Score=217.93  Aligned_cols=173  Identities=30%  Similarity=0.541  Sum_probs=161.6

Q ss_pred             CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094         452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE  531 (663)
Q Consensus       452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~  531 (663)
                      +.+.+..+|++|+|..+|||+|++++|+.+.|...|..+||++|..+.+.++++ .+.+.+||++||++|+.+...||++
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~E-dvr~mlWdtagqeEfDaItkAyyrg   92 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIE-DVRSMLWDTAGQEEFDAITKAYYRG   92 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHH-HHHHHHHHhccchhHHHHHHHHhcc
Confidence            356778899999999999999999999999999999999999999999999988 7889999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      |.+++|||+-+|+.||+.+..|+..+...+     .++|.++|-||+||.++. .+...+++.+++...+ .++-+|++.
T Consensus        93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~-----~~IPtV~vqNKIDlveds-~~~~~evE~lak~l~~-RlyRtSvke  165 (246)
T KOG4252|consen   93 AQASVLVFSTTDRYSFEATLEWYNKVQKET-----ERIPTVFVQNKIDLVEDS-QMDKGEVEGLAKKLHK-RLYRTSVKE  165 (246)
T ss_pred             ccceEEEEecccHHHHHHHHHHHHHHHHHh-----ccCCeEEeeccchhhHhh-hcchHHHHHHHHHhhh-hhhhhhhhh
Confidence            999999999999999999999999998653     569999999999999887 7888999999999986 799999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhh
Q psy4094         612 NINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~~k~  632 (663)
                      ..||.++|.+++..+..+++.
T Consensus       166 d~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  166 DFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999887764

>PTZ00099 rab6; Provisional

Probab=99.91  E-value=1.3e-23  Score=202.90  Aligned_cols=144  Identities=34%  Similarity=0.499  Sum_probs=128.9

Q ss_pred             CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy4094         481 QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK  560 (663)
Q Consensus       481 ~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~  560 (663)
                      +.|.+.|.+|+|.+|..+.+.+++. .+.|.||||+|+++|+.++..||++||++|||||++++.+|+.+..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~-~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEG-PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCE-EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4677889999999999998988886 799999999999999999999999999999999999999999999999988754


Q ss_pred             cCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       561 ~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      .    ..++|+||||||+||...+ .+..+++..++..+++ .|++|||++|.||+++|++|++.+.+...
T Consensus        82 ~----~~~~piilVgNK~DL~~~~-~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         82 R----GKDVIIALVGNKTDLGDLR-KVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             c----CCCCeEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence            2    2468999999999997655 5788889999998886 79999999999999999999999977553

>PLN00023 GTP-binding protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=222.00  Aligned_cols=179  Identities=22%  Similarity=0.406  Sum_probs=141.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC------------ceeEEEEEEeCCCccchhh
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH------------ETIIRLQLWDIAGQERFGN  523 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg------------e~~vkLqIwDTpGQErfrs  523 (663)
                      ...+||+|||+.|||||||+++|+++.|...+.+|+|.++..+.+.+++            +..+.++||||+|+++|+.
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            3458999999999999999999999999999999999999888777653            2368899999999999999


Q ss_pred             hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCC--------CCCCCCcEEEEEeCCCCCCCC--CC---CCHH
Q psy4094         524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTL--------PDGNPIPCVLLANKCDQPKEG--IA---NNPA  590 (663)
Q Consensus       524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~--------~~~~~IPIILVGNKsDL~der--~~---Vs~e  590 (663)
                      ++..||++++++|+|||++++.+|+.+..|+..+..+...        ....++||||||||+||...+  +.   +..+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            9999999999999999999999999999999999875321        012358999999999997643  12   3689


Q ss_pred             HHHHHHHHcCCCeEE---------------EEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094         591 KIDEFIKEHNFSGWF---------------ETSAKDNINIDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       591 ei~qlak~~g~i~ff---------------EtSAKtGeNVeELFe~IIr~Ile~~k~~~  634 (663)
                      +++++|..+++.+.-               -+.|+.+.=-.|++....+.++.++-...
T Consensus       179 ~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (334)
T PLN00023        179 AARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSD  237 (334)
T ss_pred             HHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcc
Confidence            999999999864321               23455554334455555555555554443

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.91  E-value=2.6e-23  Score=191.39  Aligned_cols=153  Identities=24%  Similarity=0.373  Sum_probs=120.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      +|+|+|++|||||||+++|.+..+.. +.++++.++  ..+.+.+  .+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~   75 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLEK--HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV   75 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeCC--ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999988764 467776554  3444443  478999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------HcCCCeEEEEeCCCCc
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK------EHNFSGWFETSAKDNI  613 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak------~~g~i~ffEtSAKtGe  613 (663)
                      |+++..+|..+..|+..+...   ....++|+|||+||+|+...   ...+++...+.      ..+ .++++|||++|+
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~  148 (160)
T cd04156          76 DSSDEARLDESQKELKHILKN---EHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRD-WYVQPCSAVTGE  148 (160)
T ss_pred             ECCcHHHHHHHHHHHHHHHhc---hhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCc-EEEEecccccCC
Confidence            999999999998888777642   12256999999999998642   23333333221      122 368999999999


Q ss_pred             CHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQ  624 (663)
Q Consensus       614 NVeELFe~IIr  624 (663)
                      ||+++|++|++
T Consensus       149 gv~~~~~~i~~  159 (160)
T cd04156         149 GLAEAFRKLAS  159 (160)
T ss_pred             ChHHHHHHHhc
Confidence            99999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.90  E-value=3.8e-23  Score=191.58  Aligned_cols=154  Identities=23%  Similarity=0.387  Sum_probs=122.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCC------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFF------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~f------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      +|+|+|+.|||||||+++|.+...      ...+.++++.++..  +.+++   +.+.+||++|++.|..++..+++.+|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~   75 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVGN---ARLKFWDLGGQESLRSLWDKYYAECH   75 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEECC---EEEEEEECCCChhhHHHHHHHhCCCC
Confidence            589999999999999999986422      33556777766643  44443   68999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc------CCCeEEEE
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH------NFSGWFET  607 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~------g~i~ffEt  607 (663)
                      ++|+|||+++..++..+..|+..+...   ....++|+|||+||+|+...   +..+++..+....      ...+++++
T Consensus        76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          76 AIIYVIDSTDRERFEESKSALEKVLRN---EALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             EEEEEEECchHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEe
Confidence            999999999999999988888777642   22357999999999998653   3455555555432      12479999


Q ss_pred             eCCCCcCHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr  624 (663)
                      ||++|.|++++|+||++
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.90  E-value=4.3e-23  Score=194.85  Aligned_cols=153  Identities=23%  Similarity=0.303  Sum_probs=123.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      +|+|+|.+|||||||+++|.+. +...+.+|+|..  ...+.+.   .+.+++||++|+++++.++..||++||++|+||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~   74 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD---KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV   74 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC---CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence            4899999999999999999977 777888888865  3344443   378999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH------HHHHHcCC-CeEEEEeCCCC
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID------EFIKEHNF-SGWFETSAKDN  612 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~------qlak~~g~-i~ffEtSAKtG  612 (663)
                      |+++..+|+.+..|+..+...   ....++|+|||+||+|+...+   ...++.      +++...+. +.+++|||++|
T Consensus        75 D~s~~~s~~~~~~~l~~l~~~---~~~~~~piliv~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161          75 DSSDDDRVQEVKEILRELLQH---PRVSGKPILVLANKQDKKNAL---LGADVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             ECCchhHHHHHHHHHHHHHcC---ccccCCcEEEEEeCCCCcCCC---CHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence            999999999999999888743   223578999999999997754   222222      23322332 36788999998


Q ss_pred             ------cCHHHHHHHHHH
Q psy4094         613 ------INIDDAAKTLVQ  624 (663)
Q Consensus       613 ------eNVeELFe~IIr  624 (663)
                            .|+.+.|+||+.
T Consensus       149 ~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         149 LGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCccccCHHHHHHHHhc
Confidence                  899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.90  E-value=5.1e-23  Score=196.10  Aligned_cols=158  Identities=20%  Similarity=0.258  Sum_probs=128.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|.++.+. .+.++++...  ..+.+++   +.+.+||++|+++++.+|..+++++|++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~---~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN---IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            3589999999999999999999988774 4666766433  3455543   57999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc---------------CC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH---------------NF  601 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~---------------g~  601 (663)
                      +|||+++..+|.....|+..+...   ....+.|+|||+||+|+..   .+..+++++++..+               ..
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~---~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSD---EELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcC---ccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCcee
Confidence            999999999999888888877642   2235699999999999865   35667777777532               12


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      +.+++|||++|+|++++|+||++.+
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHhhC
Confidence            4689999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.90  E-value=6.8e-23  Score=194.43  Aligned_cols=154  Identities=24%  Similarity=0.328  Sum_probs=122.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|..+.+.. +.++++.++..  +.++   .+.+.+||++|+++|...+..+++++|++|+
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVYK---NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEEC---CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            4799999999999999999999887764 57788766543  3333   3689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCCCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAKDN  612 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAKtG  612 (663)
                      |||++++.+|..+..|+..+..+   ....++|++||+||+|+...   ...+++.+.+.     ..+ +.+++|||++|
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~---~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~-~~~~~~SA~~g  161 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAH---EDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHT-WHIQGCCALTG  161 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhc---hhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCc-eEEEecccCCC
Confidence            99999999999888777766532   22356999999999998652   23444333222     223 36899999999


Q ss_pred             cCHHHHHHHHHH
Q psy4094         613 INIDDAAKTLVQ  624 (663)
Q Consensus       613 eNVeELFe~IIr  624 (663)
                      .||+++|++|++
T Consensus       162 ~gi~e~~~~l~~  173 (174)
T cd04153         162 EGLPEGLDWIAS  173 (174)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.90  E-value=8.6e-23  Score=189.14  Aligned_cols=153  Identities=25%  Similarity=0.332  Sum_probs=116.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|+++||||||+++|..+.+. .+.++++.++.  .+.+.   .+.++|||++|+++|+.++..++..+|++|+||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~   74 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTYK---NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV   74 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEEC---CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            6899999999999999999877665 45677775543  33332   368999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCCcCH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDNINI  615 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtGeNV  615 (663)
                      |++++.++..+..|+..+...   ....++|+|||+||+|+....   ...++...+....    ..++|+|||++|.||
T Consensus        75 d~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151          75 DSTDRDRLGTAKEELHAMLEE---EELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHhc---hhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence            999998888776666544321   122468999999999996532   2333322221111    136999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         616 DDAAKTLVQ  624 (663)
Q Consensus       616 eELFe~IIr  624 (663)
                      +++|++|++
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01890 LepA LepA subfamily

Probab=99.90  E-value=2.2e-22  Score=188.85  Aligned_cols=155  Identities=18%  Similarity=0.284  Sum_probs=117.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC-------CCCcccc------ceeeeceeEEEec-----CCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF-------FSPHYRA------TIGVDFALKVLSW-----DHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~-------fsee~~~------TigiDf~~ktV~v-----dge~~vkLqIwDTpGQErf  521 (663)
                      +|+|||+.+||||||+++|++..       +...+..      +.|+.+....+.+     ++. .+.++||||+|+++|
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~   80 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQ-EYLLNLIDTPGHVDF   80 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCC-cEEEEEEECCCChhh
Confidence            79999999999999999998732       2222322      2244444433332     343 688999999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~  601 (663)
                      ..++..+++.+|++|+|||+++..+++.+..|.....        .++|+|+|+||+|+....   ..+...+++..+++
T Consensus        81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~  149 (179)
T cd01890          81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--------NNLEIIPVINKIDLPSAD---PERVKQQIEDVLGL  149 (179)
T ss_pred             HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--------cCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCC
Confidence            9999999999999999999999888888777754332        358999999999986532   22334556666664


Q ss_pred             --CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         602 --SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       602 --i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                        ..+|++||++|.||+++|++|++.+
T Consensus       150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         150 DPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence              2489999999999999999998865

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.89  E-value=2e-22  Score=185.51  Aligned_cols=153  Identities=22%  Similarity=0.329  Sum_probs=123.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|+|..|||||||++++++..+ ..+.++++..+.  .+.+.   .+.+.+||++|++.|..++..++..+|++|+||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   74 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK---NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV   74 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC---CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence            699999999999999999998873 456667765543  34443   368999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCcCH
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNINI  615 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGeNV  615 (663)
                      |++++.+|..+..|+..+....   ...+.|+|+|+||+|+....   ..++..+.+...    ..++++++||++|.|+
T Consensus        75 D~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878          75 DSSDRERIEEAKEELHKLLNEE---ELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence            9999999999999888777542   23579999999999987643   334444443322    2357999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         616 DDAAKTLVQ  624 (663)
Q Consensus       616 eELFe~IIr  624 (663)
                      +++|++|+.
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.89  E-value=4.9e-22  Score=178.87  Aligned_cols=153  Identities=25%  Similarity=0.371  Sum_probs=122.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD  540 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD  540 (663)
                      |+|+|++|||||||+++|.+..+...+.++++.++..  +...   .+.+.+||++|++.|+.++..++..+|++|+|||
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG---NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC---CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            8999999999999999999999999999999877653  3332   2789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----cCCCeEEEEeCCCCcCHH
Q psy4094         541 VTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE----HNFSGWFETSAKDNINID  616 (663)
Q Consensus       541 VTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~----~g~i~ffEtSAKtGeNVe  616 (663)
                      +++..+|..+..|+..+...   ....++|+++|+||+|+....   ..+++......    ....+++++||++|.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (159)
T cd04159          77 AADRTALEAAKNELHDLLEK---PSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNID  150 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence            99999999888887776542   223568999999999986543   22222222211    111478999999999999


Q ss_pred             HHHHHHHH
Q psy4094         617 DAAKTLVQ  624 (663)
Q Consensus       617 ELFe~IIr  624 (663)
                      ++|++|++
T Consensus       151 ~l~~~l~~  158 (159)
T cd04159         151 IVLDWLIK  158 (159)
T ss_pred             HHHHHHhh
Confidence            99999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.88  E-value=1.3e-21  Score=189.93  Aligned_cols=168  Identities=32%  Similarity=0.454  Sum_probs=140.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|..+.+...+.++++..+....+...+. .+.+.+|||+||++|+.++..|+.+++++++|
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            89999999999999999999999999999999998988888877765 68999999999999999999999999999999


Q ss_pred             EeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHc--CCCeE
Q psy4094         539 FDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEH--NFSGW  604 (663)
Q Consensus       539 yDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~--g~i~f  604 (663)
                      ||.++ ..+++....|...+....    ..+.|+|+|+||+|+..++           ...........+...  ....+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~----~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL  160 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhC----CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence            99999 566777789999988642    2469999999999998764           123333333333333  12238


Q ss_pred             EEEeCC--CCcCHHHHHHHHHHHHHhhhh
Q psy4094         605 FETSAK--DNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       605 fEtSAK--tGeNVeELFe~IIr~Ile~~k  631 (663)
                      ++||++  .+.||.++|..+++.+.....
T Consensus       161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         161 LETSAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             eEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            999999  999999999999999976543

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.88  E-value=6.3e-22  Score=190.29  Aligned_cols=157  Identities=20%  Similarity=0.241  Sum_probs=123.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..++|+|+|.+|||||||+++|.++.+. .+.+|.+...  ..+.+.+   +.+.+||++|+.+++.++..++.++|++|
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGN---IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4489999999999999999999988664 3455554332  3333332   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----------CCCeEE
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-----------NFSGWF  605 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-----------g~i~ff  605 (663)
                      +|||++++.+|.....|+..+...   ....++|+|||+||+|+..   .+..+++...+...           ....++
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~---~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~  163 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSD---EELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVF  163 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence            999999999999988888776532   1235689999999999864   34566665544221           234589


Q ss_pred             EEeCCCCcCHHHHHHHHHHH
Q psy4094         606 ETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~  625 (663)
                      +|||++|+|++++++||+.+
T Consensus       164 ~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      164 MCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EeecccCCChHHHHHHHHhh
Confidence            99999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.88  E-value=2.1e-21  Score=172.35  Aligned_cols=156  Identities=24%  Similarity=0.413  Sum_probs=131.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|.+|+|||||++++++..+...+.++++.++....+.+++. .+.+.+||++|+.++..++..+++++++++++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK-TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE-EEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            79999999999999999999998888888899999988887877764 57899999999999999999999999999999


Q ss_pred             EeCCCc-ccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         539 FDVTRA-ATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       539 yDVTd~-~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|+... .++.... .|...+...+.    .++|+++|+||+|+....   ........+...+...++++||++|.|++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~gv~  153 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE----SNVPIILVGNKIDLRDAK---LKTHVAFLFAKLNGEPIIPLSAETGKNID  153 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc----cCCcEEEEEEcccCCcch---hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence            999987 7777766 78877776532    278999999999996643   33444455555555679999999999999


Q ss_pred             HHHHHH
Q psy4094         617 DAAKTL  622 (663)
Q Consensus       617 ELFe~I  622 (663)
                      ++|.+|
T Consensus       154 ~~~~~l  159 (161)
T TIGR00231       154 SAFKIV  159 (161)
T ss_pred             HHHHHh
Confidence            999986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG4423|consensus

Probab=99.88  E-value=2.3e-24  Score=211.11  Aligned_cols=176  Identities=72%  Similarity=1.160  Sum_probs=164.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ..+.||++|+|+-|||||+++.+|+...|+.+|+.+||++|..++..+++...+++++||++||++|..+...||+.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            56789999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +++|||+++...|+.+..|.+++..-+...++..+|+|+.+||||............+.++++++|+..++|+|+|.+.|
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            99999999999999999999999988888888999999999999987654334457788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4094         615 IDDAAKTLVQKILEND  630 (663)
Q Consensus       615 VeELFe~IIr~Ile~~  630 (663)
                      +.|+-..++++++...
T Consensus       182 i~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  182 IPEAQRELVEKILVND  197 (229)
T ss_pred             hhHHHHHHHHHHHhhc
Confidence            9999999999998766

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.87  E-value=7.2e-22  Score=179.56  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=105.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc-----chhhhHHHHHhcCcE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-----RFGNMTRVYYKEAVG  534 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-----rfrsl~~~~~r~ADg  534 (663)
                      ||+|||++|||||||+++|.+..+  .+.+++++++.             -.+|||+|+.     .|+.+.. .++++|+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~   65 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------------DGAIDTPGEYVENRRLYSALIV-TAADADV   65 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------------CeeecCchhhhhhHHHHHHHHH-HhhcCCE
Confidence            899999999999999999998765  34455544432             1589999982     3444443 5899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.++.. ..|+..+          ..|+|+|+||+|+.+.  .+..+++.+++...+..++|++||++|.|
T Consensus        66 vilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  132 (142)
T TIGR02528        66 IALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAEA--DVDIERAKELLETAGAEPIFEISSVDEQG  132 (142)
T ss_pred             EEEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCCc--ccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            999999999998865 3454321          1499999999999652  34567778888888766799999999999


Q ss_pred             HHHHHHHHH
Q psy4094         615 IDDAAKTLV  623 (663)
Q Consensus       615 VeELFe~II  623 (663)
                      ++++|++|+
T Consensus       133 i~~l~~~l~  141 (142)
T TIGR02528       133 LEALVDYLN  141 (142)
T ss_pred             HHHHHHHHh
Confidence            999999885

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01898 Obg Obg subfamily

Probab=99.87  E-value=5e-21  Score=177.52  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=114.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHHh---cC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYYK---EA  532 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~r---~A  532 (663)
                      +|+|||.+|||||||+++|.+........+..+.+.....+.+++.  ..+.||||||+.    .++.++..+++   .+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG--RSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC--CeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            6999999999999999999875432111111222222223334332  479999999974    22234444444   59


Q ss_pred             cEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         533 VGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       533 DgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      |++|+|||+++. .+++.+..|++.+.....  ...++|+|+|+||+|+....  ...+.+..++.......++++||++
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~  155 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNP--ELLEKPRIVVLNKIDLLDEE--ELFELLKELLKELWGKPVFPISALT  155 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCc--cccccccEEEEEchhcCCch--hhHHHHHHHHhhCCCCCEEEEecCC
Confidence            999999999999 899999999999886531  22468999999999996644  2344455566554234799999999


Q ss_pred             CcCHHHHHHHHHHH
Q psy4094         612 NINIDDAAKTLVQK  625 (663)
Q Consensus       612 GeNVeELFe~IIr~  625 (663)
                      +.|++++|++|++.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.87  E-value=6.4e-21  Score=178.03  Aligned_cols=152  Identities=23%  Similarity=0.317  Sum_probs=119.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .++|+|+|++|||||||++++.+..+. .+.++.|.++  ..+.+++   ..+.+||++|+..+...+..+++++|++|+
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG---FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            589999999999999999999987654 3556666443  3444444   578999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-------CeEEEEeCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-------SGWFETSAK  610 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-------i~ffEtSAK  610 (663)
                      |||+++..+|.....|+..+...   ....++|+++|+||+|+....   ..++   ++...+.       ..+++|||+
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~---~~~~---i~~~l~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEE---EKLAGVPVLVFANKQDLATAA---PAEE---IAEALNLHDLRDRTWHIQACSAK  158 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEECCCCccCC---CHHH---HHHHcCCcccCCCeEEEEEeECC
Confidence            99999999998888887766542   223469999999999986532   2233   3333332       247899999


Q ss_pred             CCcCHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQ  624 (663)
Q Consensus       611 tGeNVeELFe~IIr  624 (663)
                      +|.|++++|+||++
T Consensus       159 ~~~gi~~~~~~l~~  172 (173)
T cd04155         159 TGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.86  E-value=3.9e-21  Score=176.05  Aligned_cols=156  Identities=18%  Similarity=0.169  Sum_probs=109.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC---CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~---~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      .|+|+|++|||||||+++|.+.   .+..++.++++++.....+.+.+.  ..+++|||+|+++|......+++++|++|
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSG--KRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCC--cEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            6899999999999999999963   344444555555555555665532  47999999999999887888899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc--CCCeEEEEeCCCCc
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH--NFSGWFETSAKDNI  613 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~--g~i~ffEtSAKtGe  613 (663)
                      +|||+++....+. ..++..+...      ...|+|||+||+|+.... .....+++.+++...  ...+++++||++|.
T Consensus        80 ~V~d~~~~~~~~~-~~~~~~~~~~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171          80 LVVAADEGIMPQT-REHLEILELL------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EEEECCCCccHhH-HHHHHHHHHh------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            9999987322111 1222222210      114899999999996532 112234445555442  22579999999999


Q ss_pred             CHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQ  624 (663)
Q Consensus       614 NVeELFe~IIr  624 (663)
                      |++++|+.|.+
T Consensus       153 ~v~~l~~~l~~  163 (164)
T cd04171         153 GIEELKEYLDE  163 (164)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.86  E-value=5.3e-21  Score=183.61  Aligned_cols=159  Identities=28%  Similarity=0.460  Sum_probs=129.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|..|+|||||++++..+.+. ...+|+|.+.  ..+.+.+   +.+.+||++|+..++.+|..||.++|++
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~~---~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYKG---YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEETT---EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeCc---EEEEEEeccccccccccceeecccccee
Confidence            45689999999999999999999876543 3677777554  4455543   6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-----CCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-----FSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-----~i~ffEtSAK  610 (663)
                      |||+|.++...+......+..+...   ....++|++|++||+|+...   +..+++...+....     .+.++.|||.
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~---~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~  159 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLND---PELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAK  159 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTS---GGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred             EEEEecccceeecccccchhhhcch---hhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence            9999999999999888877776643   23357999999999998763   46666666554332     2458899999


Q ss_pred             CCcCHHHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQKI  626 (663)
Q Consensus       611 tGeNVeELFe~IIr~I  626 (663)
                      +|+|+.+.|+||+++|
T Consensus       160 ~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  160 TGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcC
Confidence            9999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.86  E-value=1.5e-20  Score=174.39  Aligned_cols=156  Identities=13%  Similarity=0.181  Sum_probs=108.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh---------hhHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG---------NMTRVYYK  530 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr---------sl~~~~~r  530 (663)
                      +|+|+|++|||||||+++|.+..+.....+..+.+.....+.+.   .+.++||||+|+....         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK---YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC---ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            79999999999999999999987653322222222333233332   3689999999984211         01111123


Q ss_pred             cCcEEEEEEeCCCcccH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         531 EAVGAFIVFDVTRAATF--DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SF--e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      .+|++|+|||+++..++  +....|+..+....     .++|+|||+||+|+.... .  ..+..+++...+ .++++||
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~-~--~~~~~~~~~~~~-~~~~~~S  149 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE-D--LSEIEEEEELEG-EEVLKIS  149 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh-h--HHHHHHhhhhcc-CceEEEE
Confidence            46899999999987654  66677888776431     368999999999996543 1  222445554444 5799999


Q ss_pred             CCCCcCHHHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Il  627 (663)
                      |++|.|++++|++|.+.++
T Consensus       150 a~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         150 TLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             ecccCCHHHHHHHHHHHhC
Confidence            9999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=99.84  E-value=4.6e-20  Score=178.63  Aligned_cols=156  Identities=17%  Similarity=0.163  Sum_probs=115.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc---------hhhhHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER---------FGNMTRV  527 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr---------frsl~~~  527 (663)
                      ..++|+|+|++|||||||++++++..+........+.+.....+.+++.  ..+.||||+|+..         |...+ .
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG--REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC--ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4579999999999999999999987654333333344444555555543  3689999999732         22222 2


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      .+..+|++|+|||++++.++..+..|...+...    ...++|+|+|+||+|+....      ....++...+ .+++++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~----~~~~~~viiV~NK~Dl~~~~------~~~~~~~~~~-~~~~~~  185 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKEL----GAEDIPMILVLNKIDLLDDE------ELEERLEAGR-PDAVFI  185 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc----CcCCCCEEEEEEccccCChH------HHHHHhhcCC-CceEEE
Confidence            367899999999999999999888888877643    23468999999999986543      1113344344 479999


Q ss_pred             eCCCCcCHHHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~I  626 (663)
                      ||++|.|++++|++|.+++
T Consensus       186 Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         186 SAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             EcCCCCCHHHHHHHHHhhC
Confidence            9999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.84  E-value=3.6e-20  Score=178.96  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh--CCCCCcc------------ccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH--QFFSPHY------------RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM  524 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg--~~fsee~------------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl  524 (663)
                      .+|+|+|+.+||||||+++|+.  +.|...+            ..+.|..+....+.+..+ .+.++||||+|+++|..+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-DTKINIVDTPGHADFGGE   81 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-CEEEEEEECCCcHHHHHH
Confidence            4899999999999999999997  5554433            234555555555555443 478999999999999999


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-----  599 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-----  599 (663)
                      +..+++++|++|+|||+++.. +.....|+..+..       .++|+|||+||+|+...+.....+++.+++..+     
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE  153 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999743 3333444444331       358999999999997654223345555655332     


Q ss_pred             --CCCeEEEEeCCCCcCHHHH
Q psy4094         600 --NFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       600 --g~i~ffEtSAKtGeNVeEL  618 (663)
                        + ++++++||++|.|+.++
T Consensus       154 ~~~-~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         154 QLD-FPVLYASAKNGWASLNL  173 (194)
T ss_pred             cCc-cCEEEeehhcccccccc
Confidence              3 47999999999877544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.84  E-value=9.1e-20  Score=168.42  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=114.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      .|+|+|+.|+|||||+++|....+...+..+++.++....+..+......+.+|||+|++.|..++..++..+|++|+|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988877666666666655556554111367999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCCCcC
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKDNIN  614 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKtGeN  614 (663)
                      |+++....+... .+..+..       .++|+|+|+||+|+.........+....+...     ....++++|||++|+|
T Consensus        82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG  153 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence            999854322222 2222221       35899999999998653210111112111111     1124799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         615 IDDAAKTLVQKI  626 (663)
Q Consensus       615 VeELFe~IIr~I  626 (663)
                      ++++|++|+++.
T Consensus       154 i~~l~~~l~~~~  165 (168)
T cd01887         154 IDDLLEAILLLA  165 (168)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.83  E-value=7.3e-20  Score=176.55  Aligned_cols=156  Identities=20%  Similarity=0.318  Sum_probs=108.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC-----------ccchhhhH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG-----------QERFGNMT  525 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG-----------QErfrsl~  525 (663)
                      ..++|+|+|.+|||||||+++|.+..+...+.++++.+  ...+.+.     .+++|||+|           +++|+.++
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG-----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec-----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            45799999999999999999999988766666655433  3333332     489999999           67788888


Q ss_pred             HHHHh-cC---cEEEEEEeCCCcccHHHH-HHHH--------HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q psy4094         526 RVYYK-EA---VGAFIVFDVTRAATFDAV-LKWK--------QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI  592 (663)
Q Consensus       526 ~~~~r-~A---DgaILVyDVTd~~SFe~L-~~wi--------eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei  592 (663)
                      ..|+. .+   +++++|+|.++   +..+ ..|.        ..+...+.   ..++|+|||+||+|+...+    .+.+
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~----~~~~  150 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKS---FIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR----DEVL  150 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCcc---ccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH----HHHH
Confidence            78775 44   56666666543   3222 2231        11111111   2469999999999986532    3455


Q ss_pred             HHHHHHcCC--------CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         593 DEFIKEHNF--------SGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       593 ~qlak~~g~--------i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      .+++..+++        ..+++|||++| ||+++|++|++.+...+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            666666664        14799999999 99999999999875543

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.82  E-value=1.6e-19  Score=164.85  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=114.3

Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh------hHHHHHh--cCcE
Q psy4094         463 VIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN------MTRVYYK--EAVG  534 (663)
Q Consensus       463 VLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs------l~~~~~r--~ADg  534 (663)
                      |+|..|||||||++++.+..+...+.++++.++....+.+++   ..+.+|||||+..+..      ++..++.  ++|+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~   77 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG---KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL   77 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC---eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence            589999999999999998876666667777777777777765   4789999999987764      4666775  8999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|+|+++....   ..|+..+..       .++|+|+|+||+|+.... .+ ......++..++. +++++||.+|.|
T Consensus        78 vi~v~d~~~~~~~---~~~~~~~~~-------~~~~~iiv~NK~Dl~~~~-~~-~~~~~~~~~~~~~-~~~~iSa~~~~~  144 (158)
T cd01879          78 IVNVVDATNLERN---LYLTLQLLE-------LGLPVVVALNMIDEAEKR-GI-KIDLDKLSELLGV-PVVPTSARKGEG  144 (158)
T ss_pred             EEEEeeCCcchhH---HHHHHHHHH-------cCCCEEEEEehhhhcccc-cc-hhhHHHHHHhhCC-CeEEEEccCCCC
Confidence            9999999875442   234444432       358999999999997643 22 2334566666674 799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         615 IDDAAKTLVQKI  626 (663)
Q Consensus       615 VeELFe~IIr~I  626 (663)
                      +.++|+++.+.+
T Consensus       145 ~~~l~~~l~~~~  156 (158)
T cd01879         145 IDELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.82  E-value=3.8e-19  Score=154.87  Aligned_cols=156  Identities=36%  Similarity=0.628  Sum_probs=120.4

Q ss_pred             EEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeC
Q psy4094         463 VIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDV  541 (663)
Q Consensus       463 VLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDV  541 (663)
                      |+|+.|+|||||++++.+... ...+..+. .++....+..... ...+.+||++|+..+...+..+++.+|++|+|||+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   78 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGK-KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV   78 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCE-EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence            589999999999999998877 45555665 6777777766554 57899999999999988889999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Q psy4094         542 TRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       542 Td~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~  621 (663)
                      ++..++..+..|+.....   .....++|+|+|+||+|+.... .................+++++|+..+.|+++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~ivv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882          79 TDRESFENVKEWLLLILI---NKEGENIPIILVGNKIDLPEER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             cCHHHHHHHHHHHHHHHH---hhccCCCcEEEEEecccccccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence            999999998888422222   1234679999999999987644 112221123333344468999999999999999999


Q ss_pred             HHH
Q psy4094         622 LVQ  624 (663)
Q Consensus       622 IIr  624 (663)
                      |++
T Consensus       155 l~~  157 (157)
T cd00882         155 LAE  157 (157)
T ss_pred             HhC
Confidence            863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0073|consensus

Probab=99.81  E-value=7.8e-19  Score=169.50  Aligned_cols=165  Identities=23%  Similarity=0.362  Sum_probs=131.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .++.++|+|+|..|+|||||+++|.+.. .....+|.|  |..+++.+++   +.|+|||++||..++..|..||..+|+
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~---~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG---YTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc---eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            3457999999999999999999998865 445566666  6677777765   689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHH---HHHHHHHcCCCeEEEEeCCC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAK---IDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~ee---i~qlak~~g~i~ffEtSAKt  611 (663)
                      +|+|+|..|+..|+.....+..+..   .....+.|++|++||.|+...-.......   ...+++.+. ++++-|||.+
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~t  162 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVT  162 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEeccc
Confidence            9999999999999888776666553   33446789999999999985321111221   233444455 4799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |+++.+-|.|++..+..+
T Consensus       163 ge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  163 GEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            999999999999998873

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.80  E-value=1e-18  Score=163.62  Aligned_cols=156  Identities=17%  Similarity=0.249  Sum_probs=114.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccc----------------cceeeeceeEEEecCCceeEEEEEEeCCCccchhh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYR----------------ATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN  523 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~----------------~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs  523 (663)
                      +|+|+|..|+|||||+++|++......+.                .+++.+.....+...   ...+.|||++|+..|..
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~~~~~~   77 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP---DRRVNFIDTPGHEDFSS   77 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC---CEEEEEEeCCCcHHHHH
Confidence            48999999999999999999876654332                222333333333333   25799999999999999


Q ss_pred             hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcC--
Q psy4094         524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHN--  600 (663)
Q Consensus       524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g--  600 (663)
                      .+..+++.+|++|+|+|+.++...... .++..+..       .++|+++|+||+|+.. .......+++.+++...+  
T Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (189)
T cd00881          78 EVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI  149 (189)
T ss_pred             HHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence            999999999999999999987655433 34443331       4689999999999875 221223344555554432  


Q ss_pred             -----------CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         601 -----------FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       601 -----------~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                                 ..++|++||++|.|++++|.+|.+.+
T Consensus       150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                       36799999999999999999999876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.79  E-value=1.6e-18  Score=196.57  Aligned_cols=159  Identities=18%  Similarity=0.280  Sum_probs=121.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCC-------CCCcccc------ceeeeceeEE--Eec---CCceeEEEEEEeCCCcc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQF-------FSPHYRA------TIGVDFALKV--LSW---DHETIIRLQLWDIAGQE  519 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~-------fsee~~~------TigiDf~~kt--V~v---dge~~vkLqIwDTpGQE  519 (663)
                      ..+|+|||+.++|||||+++|+...       +...+..      ..|+.+....  +.+   ++. .+.|+|||||||.
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~-~~~l~liDTPG~~   81 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGE-TYVLNLIDTPGHV   81 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCC-EEEEEEEECCCcH
Confidence            4699999999999999999998642       2222222      2244444433  333   333 6899999999999


Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH  599 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~  599 (663)
                      +|...+..+++.||++|||||++++.+++....|...+.        .++|+|+|+||+|+....   ..+...++...+
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~---~~~~~~el~~~l  150 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD---PERVKKEIEEVI  150 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC---HHHHHHHHHHHh
Confidence            999999999999999999999999988888888765543        358999999999986532   223344555555


Q ss_pred             CCC--eEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         600 NFS--GWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       600 g~i--~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      ++.  .++++||++|.||+++|++|++.+..
T Consensus       151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       151 GLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             CCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            542  48999999999999999999987743

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=2.8e-18  Score=182.45  Aligned_cols=166  Identities=16%  Similarity=0.116  Sum_probs=121.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHH---HHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRV---YYK  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~---~~r  530 (663)
                      ...|+|||.++||||||++++.+........+..+.+...-.+.+.+.  ..+.|||+||...    ...+...   ++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie  235 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIE  235 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence            358999999999999999999875433232333344444445555432  4689999999632    2234444   455


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      .++++|+|||+++..+++.+..|+.+|..+..  ...+.|+|||+||+|+.... .+..+....++...+ ..+|+|||+
T Consensus       236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~--~L~~kp~IIV~NKiDL~~~~-~~~~~~~~~~~~~~~-~~i~~iSAk  311 (335)
T PRK12299        236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP--ELADKPRILVLNKIDLLDEE-EEREKRAALELAALG-GPVFLISAV  311 (335)
T ss_pred             hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh--hcccCCeEEEEECcccCCch-hHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            79999999999998899999999999987532  22468999999999997543 233334555555555 479999999


Q ss_pred             CCcCHHHHHHHHHHHHHhh
Q psy4094         611 DNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~  629 (663)
                      +++||+++|++|.+.+...
T Consensus       312 tg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        312 TGEGLDELLRALWELLEEA  330 (335)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999887653

>cd01889 SelB_euk SelB subfamily

Probab=99.79  E-value=1.2e-18  Score=168.09  Aligned_cols=162  Identities=19%  Similarity=0.132  Sum_probs=107.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC----CC---CCccccceeeeceeEEEecC-----------CceeEEEEEEeCCCccc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ----FF---SPHYRATIGVDFALKVLSWD-----------HETIIRLQLWDIAGQER  520 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~----~f---see~~~TigiDf~~ktV~vd-----------ge~~vkLqIwDTpGQEr  520 (663)
                      ++|+|+|+.+||||||+++|+..    .+   ..+..++++.+.....+.+.           ....+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    22   22233344444433333332           11146899999999976


Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHH-
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKE-  598 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~-  598 (663)
                      +..........+|++|+|+|+++.........|..  ...      .++|+|+|+||+|+.... .....+++.+.+.. 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~  152 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT  152 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence            64444445567899999999998665555443331  111      247999999999986422 11122333332221 


Q ss_pred             -----cCCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         599 -----HNFSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       599 -----~g~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                           ....+++++||++|.|+++|+++|.++|+.
T Consensus       153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence                 122579999999999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=2.4e-18  Score=189.65  Aligned_cols=163  Identities=18%  Similarity=0.147  Sum_probs=120.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhhH-
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNMT-  525 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl~-  525 (663)
                      .++|+|+|.+|||||||+++|++..+. ....++++.++....+.+++.   .+.||||+|.          +.|..+. 
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~---~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK---TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE---EEEEEECCCccccccccchHHHHHHHHH
Confidence            489999999999999999999987653 455677777887777777764   4689999995          3343333 


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHcCCCeE
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~eei~qlak~~g~i~f  604 (663)
                      ..++++||++|+|||++++.+++.+. |+..+..       .++|+|||+||+|+..... ....+++...+.....+++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  359 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR  359 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence            34678999999999999999988874 4444432       4689999999999965320 1112223222233344689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      ++|||++|.||+++|+.|.+.+.....
T Consensus       360 ~~~SAk~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        360 VNISAKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999987754443

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.78  E-value=7.9e-19  Score=155.14  Aligned_cols=114  Identities=30%  Similarity=0.584  Sum_probs=86.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC--CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS--PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs--ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      ||+|+|+.|||||||+++|++..+.  ..+....+..+......+... ...+.+||++|++.+...+..++..+|++||
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il   79 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD-RQSLQFWDFGGQEEFYSQHQFFLKKADAVIL   79 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE-EEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC-ceEEEEEecCccceecccccchhhcCcEEEE
Confidence            7999999999999999999998876  233334444455455555554 4459999999999998888888999999999


Q ss_pred             EEeCCCcccHHHHHH---HHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         538 VFDVTRAATFDAVLK---WKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       538 VyDVTd~~SFe~L~~---wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      |||++++.+|+.+..   |+..+..+     ..++|+||||||.|
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~~~~~-----~~~~piilv~nK~D  119 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKNIRKR-----DKNIPIILVGNKSD  119 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHHHHHH-----SSCSEEEEEEE-TC
T ss_pred             EEcCCChHHHHHHHHHHHHHHHHHcc-----CCCCCEEEEEeccC
Confidence            999999999999754   45555532     24599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1673|consensus

Probab=99.78  E-value=5.3e-19  Score=169.67  Aligned_cols=167  Identities=27%  Similarity=0.461  Sum_probs=144.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||.++|++.+|||||+-.|+++.+++++..+.|++|..+++.+.+. .+.+.|||.+||++|..+....+.++-++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t-~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGT-DISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecce-EEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            34589999999999999999999999999999999999999999999987 78999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC----CCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK----EGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d----er~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      +|+||++.+..+..+.+|+.+-+.    .+..-+| ||||+|.|+--    +.......+++.+|+..+. .+|.||+..
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~----~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~  170 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARG----LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-SLFFCSTSH  170 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhc----cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-cEEEeeccc
Confidence            999999999999999999988773    2334455 68999999632    2212234456778888885 799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      +.||..+|.-+..++..-
T Consensus       171 sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  171 SINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             cccHHHHHHHHHHHHhCC
Confidence            999999999998887653

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.78  E-value=7.5e-18  Score=152.59  Aligned_cols=146  Identities=18%  Similarity=0.185  Sum_probs=108.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------hHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------MTRVYY  529 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------l~~~~~  529 (663)
                      ++|+|+|+.|+|||||++++.+..+. ....++.+.++....+.+.+   ..+.+|||+|+.++..        ....++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG---IPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC---EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            58999999999999999999987543 23344555555555555543   4789999999765532        233567


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      .++|++++|+|++++.+......|..          ..+.|+|+|+||+|+..... .       .....+ .+++++||
T Consensus        79 ~~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~-~-------~~~~~~-~~~~~~Sa  139 (157)
T cd04164          79 EEADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSE-L-------LSLLAG-KPIIAISA  139 (157)
T ss_pred             hhCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCccc-c-------ccccCC-CceEEEEC
Confidence            89999999999999888777654432          24589999999999876441 1       222233 57999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q psy4094         610 KDNINIDDAAKTLVQKI  626 (663)
Q Consensus       610 KtGeNVeELFe~IIr~I  626 (663)
                      +++.|+++++++|.+.+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.78  E-value=3.8e-18  Score=154.90  Aligned_cols=148  Identities=19%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------hHHHHHhcC
Q psy4094         462 LVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------MTRVYYKEA  532 (663)
Q Consensus       462 VVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------l~~~~~r~A  532 (663)
                      +|+|+.|||||||++++++.... ....+..+.+.....+.+++   ..+.+|||+|+..+..        .+..+++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG---REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC---eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            58999999999999999986422 12233344455555555554   5799999999987543        345678899


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|+|..+..+.... .+...+..       .++|+|+|+||+|+....     .. ...+...+...++++||++|
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~-------~~~piiiv~nK~D~~~~~-----~~-~~~~~~~~~~~~~~~Sa~~~  143 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK-------SKKPVILVVNKVDNIKEE-----DE-AAEFYSLGFGEPIPISAEHG  143 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh-------cCCCEEEEEECcccCChH-----HH-HHHHHhcCCCCeEEEecccC
Confidence            999999999876655443 22222321       248999999999986643     11 23334456557899999999


Q ss_pred             cCHHHHHHHHHHHH
Q psy4094         613 INIDDAAKTLVQKI  626 (663)
Q Consensus       613 eNVeELFe~IIr~I  626 (663)
                      .|++++|++|++++
T Consensus       144 ~gv~~l~~~l~~~~  157 (157)
T cd01894         144 RGIGDLLDAILELL  157 (157)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.77  E-value=1.5e-17  Score=152.34  Aligned_cols=156  Identities=18%  Similarity=0.150  Sum_probs=106.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccch----------hhh-H
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----------GNM-T  525 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----------rsl-~  525 (663)
                      .++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+..++.   .+.+||++|+.+.          ... .
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK---KYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe---eEEEEECCCCccccchhccHHHHHHHHH
Confidence            379999999999999999999986543 223334444444455555543   5789999997433          111 1


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-HHc---CC
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI-KEH---NF  601 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla-k~~---g~  601 (663)
                      ..+++.+|++|+|+|+.++.++.... ++..+.       ..+.|+|+|+||+|+.... ....+.+.+.. ...   +.
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  149 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLR-IAGLIL-------EEGKALVIVVNKWDLVEKD-SKTMKEFKKEIRRKLPFLDY  149 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH-------hcCCCEEEEEeccccCCcc-HHHHHHHHHHHHhhcccccC
Confidence            23567899999999999988876643 333332       1358999999999987643 12222222222 222   23


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      .+++++||+++.|++++++++.+.
T Consensus       150 ~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         150 APIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CceEEEeccCCCCHHHHHHHHHHh
Confidence            579999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.77  E-value=5.6e-18  Score=181.03  Aligned_cols=154  Identities=18%  Similarity=0.157  Sum_probs=116.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc---------chhhhHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE---------RFGNMTRV  527 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE---------rfrsl~~~  527 (663)
                      ..++|+|+|.+|||||||+++|.+..+.....+..+.|+..+.+.+.++  ..+.||||+|..         .|...+ .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            3479999999999999999999987654444445556777888888654  478999999972         233322 2


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      ++.+||++|+|||++++.+++.+..|...+...    ...++|+|+|+||+|+....      ....+..  +...+++|
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~~------~v~~~~~--~~~~~i~i  332 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDEP------RIERLEE--GYPEAVFV  332 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCChH------hHHHHHh--CCCCEEEE
Confidence            478999999999999999988888787766643    23468999999999986432      1222211  22368999


Q ss_pred             eCCCCcCHHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~  625 (663)
                      ||++|.|+++++++|.+.
T Consensus       333 SAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       333 SAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EccCCCCHHHHHHHHHhh
Confidence            999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0096|consensus

Probab=99.77  E-value=5.1e-19  Score=174.13  Aligned_cols=165  Identities=33%  Similarity=0.535  Sum_probs=142.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+|++++|+.|.|||+++.+++.+.|...|.+++|++...-....+.+ .+++..|||+||+.+..+.+.||-++.++|
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g-~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccC-cEEEEeeecccceeecccccccEEecceeE
Confidence            4699999999999999999999999999999999999987776666554 699999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      ++||++.+-.+.++..|..++.+.|     .++||+++|||.|.....   .....-.+....+ +.||++||+.+.|++
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-----~NiPiv~cGNKvDi~~r~---~k~k~v~~~rkkn-l~y~~iSaksn~Nfe  158 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-----ENIPIVLCGNKVDIKARK---VKAKPVSFHRKKN-LQYYEISAKSNYNFE  158 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-----cCCCeeeeccceeccccc---cccccceeeeccc-ceeEEeecccccccc
Confidence            9999999999999999999998764     459999999999985522   1122223444455 479999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy4094         617 DAAKTLVQKILENDK  631 (663)
Q Consensus       617 ELFe~IIr~Ile~~k  631 (663)
                      .-|.|+++.+...-.
T Consensus       159 kPFl~LarKl~G~p~  173 (216)
T KOG0096|consen  159 RPFLWLARKLTGDPS  173 (216)
T ss_pred             cchHHHhhhhcCCCC
Confidence            999999999876654

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.77  E-value=5e-18  Score=157.62  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=107.4

Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhh---HHHHHhcCcEE
Q psy4094         463 VIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNM---TRVYYKEAVGA  535 (663)
Q Consensus       463 VLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl---~~~~~r~ADga  535 (663)
                      |+|.+|||||||++++.+..+.....+..+.+.....+.+.+.  ..+.|||+||+..    ++.+   ...+++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            5899999999999999987642222222223333334555522  4689999999732    2222   23457889999


Q ss_pred             EEEEeCCCc------ccHHHHHHHHHHHHhhcCC---CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         536 FIVFDVTRA------ATFDAVLKWKQDLDAKVTL---PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       536 ILVyDVTd~------~SFe~L~~wieeL~~~~~~---~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      ++|+|+++.      .++..+..|...+......   ....++|+|+|+||+|+.... ..........+.. ....+++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~  156 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEELVRELALE-EGAEVVP  156 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHHHHHHhcC-CCCCEEE
Confidence            999999998      5788888888877643210   001368999999999996543 1111111222222 3357999


Q ss_pred             EeCCCCcCHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~  625 (663)
                      |||+++.|++++++++++.
T Consensus       157 ~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         157 ISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EehhhhcCHHHHHHHHHhh
Confidence            9999999999999999765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=9.8e-18  Score=184.80  Aligned_cols=153  Identities=19%  Similarity=0.214  Sum_probs=115.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRVYY  529 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~~~  529 (663)
                      .+|+|||.+|||||||+++|++..+. ....++++.+.....+.+.+.   .+.||||+|++.        +...+..++
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR---RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc---EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            69999999999999999999987643 345566666666666666664   589999999762        445567789


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      +.||++|+|||++++.++.. ..|+..++.       .++|+|||+||+|+....    .+ ..++. ..++..+|+|||
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~----~~-~~~~~-~~g~~~~~~iSA  181 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE----AD-AAALW-SLGLGEPHPVSA  181 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc----hh-hHHHH-hcCCCCeEEEEc
Confidence            99999999999999877653 345554542       458999999999986422    11 22222 334434689999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q psy4094         610 KDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       610 KtGeNVeELFe~IIr~Ile  628 (663)
                      ++|.||+++|++|++.+..
T Consensus       182 ~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        182 LHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCCCcHHHHHHHHhhccc
Confidence            9999999999999998865

>TIGR00436 era GTP-binding protein Era

Probab=99.77  E-value=8.1e-18  Score=172.31  Aligned_cols=157  Identities=17%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccch-h-------hhHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-G-------NMTRVYYK  530 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-r-------sl~~~~~r  530 (663)
                      +|+|+|.+|||||||+|+|++..+.. ...+..+.+ ....+...+.  ..+.+|||||+... .       .....++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            69999999999999999999987542 122222222 2333433343  46899999997532 1       12345678


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      ++|++|+|+|+++..+++  ..|+..+..       .+.|+|+|+||+|+....  ........++...++..+|++||+
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFKD--KLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCHH--HHHHHHHHHHhhcCCCceEEEecC
Confidence            999999999999887765  344444442       358999999999986322  223445555555555579999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhh
Q psy4094         611 DNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~~  630 (663)
                      +|.|+++++++|.+.+....
T Consensus       148 ~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             CCCCHHHHHHHHHHhCCCCC
Confidence            99999999999998875543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0070|consensus

Probab=99.76  E-value=4.9e-18  Score=166.22  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=130.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..++|++||-.++||||++.+|..+.+... .||+|.+  .-.+.+.   .+.+++||++||++++.+|.+||++++++|
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~yk---n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYK---NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEc---ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            458999999999999999999988777655 8888844  4445554   378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKDN  612 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKtG  612 (663)
                      ||+|.+|++.+..+..-+..+..+   ....+.|+++++||.|++...   ...++.+.+..+.+    ..+..|+|.+|
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~al---s~~ei~~~L~l~~l~~~~w~iq~~~a~~G  163 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPGAL---SAAEITNKLGLHSLRSRNWHIQSTCAISG  163 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccccC---CHHHHHhHhhhhccCCCCcEEeecccccc
Confidence            999999999888877655555433   234679999999999998854   56666666655543    24667999999


Q ss_pred             cCHHHHHHHHHHHHHhh
Q psy4094         613 INIDDAAKTLVQKILEN  629 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~  629 (663)
                      +++.|.++|+...+..+
T Consensus       164 ~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  164 EGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccHHHHHHHHHHHHhcc
Confidence            99999999999987543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.76  E-value=9.4e-18  Score=180.75  Aligned_cols=161  Identities=18%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh-----------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM-----------  524 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl-----------  524 (663)
                      ..++|+|+|.+|||||||+++|++.... ....++.+.+.....+.+++.   .+.||||+|+.++...           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~---~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK---KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc---EEEEEECCCccccccchhhHHHHHHHH
Confidence            3489999999999999999999986532 233455555665566666553   6899999997654322           


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHHHHcC
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID----EFIKEHN  600 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~----qlak~~g  600 (663)
                      ...+++.||++|+|||++++.+.+... ++..+..       .++|+|||+||+|+....  ...++..    ..+...+
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~  317 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE-------AGKALVIVVNKWDLVKDE--KTREEFKKELRRKLPFLD  317 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-------cCCcEEEEEECcccCCCH--HHHHHHHHHHHHhcccCC
Confidence            134688999999999999988877764 3333331       358999999999997211  1122222    2222234


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      .+++++|||++|.||+++|+++.+.+....
T Consensus       318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       318 FAPIVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            468999999999999999999998765443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.76  E-value=1.8e-17  Score=175.82  Aligned_cols=162  Identities=16%  Similarity=0.138  Sum_probs=118.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHHH---h
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVYY---K  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~~---r  530 (663)
                      ...|+|||.++||||||++++..........+..+.....-.+.+++.  ..++|||+||+..    +..+...|+   .
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~--~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG--RSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc--eEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            458999999999999999999976533222222233333344555542  5789999999742    223444444   4


Q ss_pred             cCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         531 EAVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       531 ~ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      .|+++|+|||+++.   ..++.+..|+.+|..+..  ...+.|+|||+||+|+....  ...+.++.++..++ ..+|++
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~--~l~~kp~IIV~NK~DL~~~~--~~~~~~~~l~~~~~-~~vi~i  309 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP--ELAEKPRIVVLNKIDLLDEE--ELAELLKELKKALG-KPVFPI  309 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh--hhccCCEEEEEeCccCCChH--HHHHHHHHHHHHcC-CcEEEE
Confidence            69999999999987   788999999988876521  23468999999999997643  23344555666666 479999


Q ss_pred             eCCCCcCHHHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~I  626 (663)
                      ||++++||+++|++|.+.+
T Consensus       310 SAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       310 SALTGEGLDELLYALAELL  328 (329)
T ss_pred             EccCCcCHHHHHHHHHHHh
Confidence            9999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.76  E-value=1e-17  Score=158.65  Aligned_cols=141  Identities=18%  Similarity=0.232  Sum_probs=101.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHHhcCcEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYYKEAVGA  535 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~r~ADga  535 (663)
                      +|+|+|.+|||||||++++.+.. . ....+.++       .+.+.     .+|||||+.    ++.......+.++|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~-~~~~~~~v-------~~~~~-----~~iDtpG~~~~~~~~~~~~~~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-T-LARKTQAV-------EFNDK-----GDIDTPGEYFSHPRWYHALITTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-c-cCccceEE-------EECCC-----CcccCCccccCCHHHHHHHHHHHhcCCEE
Confidence            79999999999999999977642 1 11222222       22222     269999973    2222223347899999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEEeCCCCcC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFETSAKDNIN  614 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffEtSAKtGeN  614 (663)
                      |+|||+++..++.  ..|+..+.        .+.|+|+|+||+|+..    ...+.+.+++...++ .++|+|||++|+|
T Consensus        69 l~v~d~~~~~s~~--~~~~~~~~--------~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~g  134 (158)
T PRK15467         69 IYVHGANDPESRL--PAGLLDIG--------VSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQS  134 (158)
T ss_pred             EEEEeCCCccccc--CHHHHhcc--------CCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence            9999999988763  34544331        3578999999999854    235667788878775 4899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy4094         615 IDDAAKTLVQKILE  628 (663)
Q Consensus       615 VeELFe~IIr~Ile  628 (663)
                      |+++|++|.+.+..
T Consensus       135 i~~l~~~l~~~~~~  148 (158)
T PRK15467        135 VQQLVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHHHHHhchh
Confidence            99999999887644

>cd04163 Era Era subfamily

Probab=99.76  E-value=3.6e-17  Score=147.83  Aligned_cols=158  Identities=16%  Similarity=0.152  Sum_probs=105.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYY  529 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~  529 (663)
                      ..+|+|+|..|+|||||+++|++..+................+...+  .+.+.+||++|.....        .....++
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            37899999999999999999998654322111111111122222222  3678999999975432        2344568


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ..+|++++|+|+++..... ...++..+..       .+.|+++|+||+|+.... ....+....+....+..+++++|+
T Consensus        81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~-------~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~s~  151 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEG-DEFILELLKK-------SKTPVILVLNKIDLVKDK-EDLLPLLEKLKELGPFAEIFPISA  151 (168)
T ss_pred             HhCCEEEEEEECCCccCch-HHHHHHHHHH-------hCCCEEEEEEchhccccH-HHHHHHHHHHHhccCCCceEEEEe
Confidence            8899999999999872211 1223333332       258999999999997433 233444555555555568999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q psy4094         610 KDNINIDDAAKTLVQKI  626 (663)
Q Consensus       610 KtGeNVeELFe~IIr~I  626 (663)
                      +++.+++++|++|.+.+
T Consensus       152 ~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         152 LKGENVDELLEEIVKYL  168 (168)
T ss_pred             ccCCChHHHHHHHHhhC
Confidence            99999999999997753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.75  E-value=2.7e-17  Score=180.69  Aligned_cols=153  Identities=22%  Similarity=0.231  Sum_probs=118.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--------HHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--------TRV  527 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--------~~~  527 (663)
                      ..++|+|+|.+|||||||+++|++.... ....++.+.++....+.+++   +.+.||||+|+.++...        ...
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g---~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG---ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC---EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            3479999999999999999999986532 23446667788888888876   46799999998655432        246


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      +++++|++|+|||++++.+++..  |+..+..       .++|+|+|+||+|+...       ....++..++. +++++
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~-~~~~v  341 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN-------SLEFFVSSKVL-NSSNL  341 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc-------chhhhhhhcCC-ceEEE
Confidence            78999999999999999888876  7665542       35899999999999543       12345555664 68999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         608 SAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ||++ .||+++|+.+.+.+....
T Consensus       342 Sak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       342 SAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             EEec-CCHHHHHHHHHHHHHHHh
Confidence            9997 699999999999887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.75  E-value=2.8e-17  Score=186.10  Aligned_cols=152  Identities=16%  Similarity=0.221  Sum_probs=119.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      .+|+|+|+.++|||||+++|.+..+...+..+++.++....+.+++.  ..+.|||||||+.|..++..++..+|++|||
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~--~~i~~iDTPGhe~F~~~r~rga~~aDiaILV  165 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG--KMITFLDTPGHEAFTSMRARGAKVTDIVVLV  165 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC--cEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence            58999999999999999999998887777777777777777777543  2689999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC--------CeEEEEeCC
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--------SGWFETSAK  610 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~--------i~ffEtSAK  610 (663)
                      ||+++...-+....|. .+.       ..++|+|+++||+|+...    ..+.+.+.+..++.        .+|+++||+
T Consensus       166 Vda~dgv~~qT~e~i~-~~~-------~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       166 VAADDGVMPQTIEAIS-HAK-------AANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             EECCCCCCHhHHHHHH-HHH-------HcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            9999865444443332 121       246899999999998653    23444444444332        469999999


Q ss_pred             CCcCHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQ  624 (663)
Q Consensus       611 tGeNVeELFe~IIr  624 (663)
                      +|+|++++|++|+.
T Consensus       234 tGeGI~eLl~~I~~  247 (587)
T TIGR00487       234 TGDGIDELLDMILL  247 (587)
T ss_pred             CCCChHHHHHhhhh
Confidence            99999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.74  E-value=3.9e-17  Score=185.42  Aligned_cols=160  Identities=21%  Similarity=0.265  Sum_probs=118.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCC--CC-------------CccccceeeeceeEEEec---CCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQF--FS-------------PHYRATIGVDFALKVLSW---DHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~--fs-------------ee~~~TigiDf~~ktV~v---dge~~vkLqIwDTpGQ  518 (663)
                      ...+|+|||+.++|||||+.+|+...  +.             .+..+.+++......+.+   ++. .+.|+|||||||
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~-~~~lnLiDTPGh   84 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGE-TYILNLIDTPGH   84 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCC-cEEEEEEECCCc
Confidence            45699999999999999999998531  11             111223333332333333   333 588999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE  598 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~  598 (663)
                      .+|...+..+++.||++|||||++++...+....|...+.        .++|+|+|+||+|+....   ..+...++...
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~---~~~v~~ei~~~  153 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAAD---PERVKQEIEDV  153 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCccc---HHHHHHHHHHH
Confidence            9999999999999999999999999888887777765432        358999999999986543   22233445454


Q ss_pred             cCC--CeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         599 HNF--SGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       599 ~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +++  ..++++||++|.||+++|++|++.+..
T Consensus       154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             hCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            554  248999999999999999999988754

>PRK15494 era GTPase Era; Provisional

Probab=99.74  E-value=3.8e-17  Score=173.54  Aligned_cols=160  Identities=19%  Similarity=0.257  Sum_probs=112.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHH-------
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTR-------  526 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~-------  526 (663)
                      ...++|+|+|++|||||||+++|++..+.. ......+.++....+.+++   ..+.||||||+.. +..+..       
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC---eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            345899999999999999999999887652 1122222344445555554   4689999999843 332222       


Q ss_pred             HHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeE
Q psy4094         527 VYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGW  604 (663)
Q Consensus       527 ~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~f  604 (663)
                      .++.+||++|+|+|..+  +|..+. .|+..+..       .+.|+|||+||+|+...    ...++.+++...+ ...+
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~-------~~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i  193 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS-------LNIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLL  193 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh-------cCCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEE
Confidence            24679999999999764  555554 45555542       24678899999998642    2455666665544 3579


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      |++||++|.|++++|++|+..+.....
T Consensus       194 ~~iSAktg~gv~eL~~~L~~~l~~~~~  220 (339)
T PRK15494        194 FPISALSGKNIDGLLEYITSKAKISPW  220 (339)
T ss_pred             EEEeccCccCHHHHHHHHHHhCCCCCC
Confidence            999999999999999999998766543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.73  E-value=6.3e-17  Score=154.42  Aligned_cols=159  Identities=18%  Similarity=0.225  Sum_probs=108.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhhH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNMT  525 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl~  525 (663)
                      +..++|+|+|++|||||||+++|++..+...+.++.+.......+.++    ..+.||||+|.          ++|..+.
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN----DKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC----CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            356899999999999999999999876655555555533323223322    46899999994          4556666


Q ss_pred             HHHHhcC---cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCC
Q psy4094         526 RVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNF  601 (663)
Q Consensus       526 ~~~~r~A---DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~  601 (663)
                      ..++..+   +++++|+|.+++...... .+...+.       ..++|+++|+||+|+.... .....+.+..++.... 
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-------~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~-  168 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-------EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD-  168 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-------HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC-
Confidence            7777765   578888998876554332 1112222       1358999999999986532 1112233444444443 


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ..++++||+++.|++++|+.|.+.+-
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            47999999999999999999987653

>KOG0075|consensus

Probab=99.73  E-value=1.6e-17  Score=158.40  Aligned_cols=157  Identities=23%  Similarity=0.382  Sum_probs=126.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+.+.++|-.++|||||++....+.|.+...+++|..  .+.++- |  .+.+.+||++||.+|+.+|.+|++.++++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tk-g--nvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTK-G--NVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEecc-C--ceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            4689999999999999999999999999999999844  444432 2  4889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-------CeEEEEeCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-------SGWFETSAK  610 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-------i~ffEtSAK  610 (663)
                      |+|+.+++.+...+.-+..|   +..+...++|++++|||.|+...-   ...   ++....|.       +..|.+||+
T Consensus        95 ~VDaad~~k~~~sr~EL~~L---L~k~~l~gip~LVLGnK~d~~~AL---~~~---~li~rmgL~sitdREvcC~siSck  165 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDL---LDKPSLTGIPLLVLGNKIDLPGAL---SKI---ALIERMGLSSITDREVCCFSISCK  165 (186)
T ss_pred             EeecCCcccchhhHHHHHHH---hcchhhcCCcEEEecccccCcccc---cHH---HHHHHhCccccccceEEEEEEEEc
Confidence            99999988776665443333   335667889999999999998754   222   23333332       357999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q psy4094         611 DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile  628 (663)
                      +..||+.+.+||+++-..
T Consensus       166 e~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             CCccHHHHHHHHHHHhhh
Confidence            999999999999987643

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.73  E-value=2.3e-17  Score=159.25  Aligned_cols=162  Identities=20%  Similarity=0.228  Sum_probs=114.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC------------------CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ..++|+|+|+.++|||||+.+|+.....                  .+....++++.....+..... ...+.|+|+|||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~-~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN-NRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES-SEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc-ccceeecccccc
Confidence            3579999999999999999999853211                  112234444444444441111 368999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID-EFIK  597 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~-qlak  597 (663)
                      .+|...+...+..+|++|+|+|+.+....+....| ..+..       .++|+|||.||+|+...+.....+++. .+++
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-~~~~~-------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHL-KILRE-------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-HHHHH-------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHH
T ss_pred             cceeecccceecccccceeeeeccccccccccccc-ccccc-------cccceEEeeeeccchhhhHHHHHHHHHHHhcc
Confidence            99999999999999999999999987665544333 33332       458999999999987433222233333 4444


Q ss_pred             HcC-----CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         598 EHN-----FSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       598 ~~g-----~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .++     .++++++||.+|.|+++|++.|.+.+.
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            443     357999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.73  E-value=9.4e-17  Score=186.64  Aligned_cols=154  Identities=16%  Similarity=0.193  Sum_probs=117.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +...|+|+|+.++|||||+++|....+......+++.+.....+.+++   ..|.|||||||+.|..++..++..+|++|
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~---~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG---GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC---EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            346899999999999999999998877766666777677666777665   46899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-------HHHcC-CCeEEEEe
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-------IKEHN-FSGWFETS  608 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql-------ak~~g-~i~ffEtS  608 (663)
                      ||||++++..-+....|.. +       ...++|+|||+||+|+....    .+.+...       +..++ .++||++|
T Consensus       366 LVVdAddGv~~qT~e~i~~-a-------~~~~vPiIVviNKiDl~~a~----~e~V~~eL~~~~~~~e~~g~~vp~vpvS  433 (787)
T PRK05306        366 LVVAADDGVMPQTIEAINH-A-------KAAGVPIIVAINKIDKPGAN----PDRVKQELSEYGLVPEEWGGDTIFVPVS  433 (787)
T ss_pred             EEEECCCCCCHhHHHHHHH-H-------HhcCCcEEEEEECccccccC----HHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence            9999998654444333321 1       12468999999999996532    2222221       22222 25799999


Q ss_pred             CCCCcCHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQK  625 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~  625 (663)
                      |++|+||+++|++|+..
T Consensus       434 AktG~GI~eLle~I~~~  450 (787)
T PRK05306        434 AKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCCchHHHHhhhhh
Confidence            99999999999999764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.72  E-value=6.7e-17  Score=177.68  Aligned_cols=148  Identities=21%  Similarity=0.207  Sum_probs=115.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--------HHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--------TRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--------~~~~  528 (663)
                      .++|+|+|.+|||||||+++|++.... ....++.+.++....+.+++   ..+.||||+|+..+...        ...+
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG---IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC---eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            379999999999999999999987642 34456666788788888765   46899999998765432        2346


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++++|++|+|||++++.+++....|..          ..+.|+|+|+||+|+.... ..  .      ...+ ..++++|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~-~~--~------~~~~-~~~i~iS  351 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI-DL--E------EENG-KPVIRIS  351 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc-hh--h------hccC-CceEEEE
Confidence            889999999999999988887655543          2358999999999996543 11  1      2223 4799999


Q ss_pred             CCCCcCHHHHHHHHHHHHHh
Q psy4094         609 AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|.|+++++++|.+.+..
T Consensus       352 Aktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        352 AKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eeCCCCHHHHHHHHHHHHhh
Confidence            99999999999999998754

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.72  E-value=1e-16  Score=185.13  Aligned_cols=156  Identities=15%  Similarity=0.220  Sum_probs=116.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEec--CCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSW--DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~v--dge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ..+|+|+|+.++|||||+++|....+......+++.++....+.+  ++. .+.|.|||||||+.|..++..++..+|++
T Consensus       244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~-~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDE-NQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCC-ceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            358999999999999999999988777665556655544444433  232 47899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------cC-CCeEEEE
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-------HN-FSGWFET  607 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-------~g-~i~ffEt  607 (663)
                      |||||++++...+....|. .+.       ..++|+|||+||+|+....    .+.+.+.+..       .+ .++|+++
T Consensus       323 ILVVDA~dGv~~QT~E~I~-~~k-------~~~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAIN-YIQ-------AANVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             EEEEECcCCCChhhHHHHH-HHH-------hcCceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEE
Confidence            9999999865544443332 122       2468999999999986532    2223222222       22 3579999


Q ss_pred             eCCCCcCHHHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~I  626 (663)
                      ||++|.||++||++|+...
T Consensus       391 SAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        391 SASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ECCCCCCHHHHHHhhhhhh
Confidence            9999999999999998754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.72  E-value=5.7e-17  Score=159.20  Aligned_cols=159  Identities=19%  Similarity=0.220  Sum_probs=104.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCC---CCCccccceeeeceeEEEecC---------------------------Cc---
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQF---FSPHYRATIGVDFALKVLSWD---------------------------HE---  505 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~---fsee~~~TigiDf~~ktV~vd---------------------------ge---  505 (663)
                      ++|+|+|+.|+|||||+..+.+..   ...+....+.+......+.+.                           +.   
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999987531   122222222222211111111                           10   


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc----ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA----ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~----~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ....+.||||||+++|...+...+..+|++|+|+|++++    .+++.+..|    ...      ...|+|||+||+|+.
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~------~~~~iiivvNK~Dl~  150 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM------GLKHIIIVQNKIDLV  150 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc------CCCcEEEEEEchhcc
Confidence            015789999999999988888888999999999999974    223322222    210      114799999999986


Q ss_pred             CCC-CCCCHHHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         582 KEG-IANNPAKIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       582 der-~~Vs~eei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ... .....+++++++..+  ...++|++||++|.|++++|++|.+.+.
T Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         151 KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            522 111224444555443  1247999999999999999999987663

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=1.5e-16  Score=172.24  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=110.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRVYY  529 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~~~  529 (663)
                      ++|+|+|.+|||||||+++|++.... ....+.++.++....+.+++   ..+.||||+|++.        +......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG---REFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC---cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            58999999999999999999987642 23345566677777777766   5799999999987        334456678


Q ss_pred             hcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         530 KEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      ..+|++|+|||+.++.+...  +..|+..          .++|+|||+||+|+...     .+...++ ..+++..++++
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~----------~~~piilv~NK~D~~~~-----~~~~~~~-~~lg~~~~~~i  142 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADEEIAKILRK----------SNKPVILVVNKVDGPDE-----EADAYEF-YSLGLGEPYPI  142 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCCcEEEEEECccCccc-----hhhHHHH-HhcCCCCCEEE
Confidence            99999999999998655432  3334322          25899999999997541     1222333 34565458999


Q ss_pred             eCCCCcCHHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~  625 (663)
                      ||++|.|++++|++|+..
T Consensus       143 Sa~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        143 SAEHGRGIGDLLDAILEE  160 (435)
T ss_pred             EeeCCCCHHHHHHHHHhh
Confidence            999999999999999883

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.71  E-value=9.7e-17  Score=181.59  Aligned_cols=159  Identities=20%  Similarity=0.258  Sum_probs=122.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      +.|+++|+.++|||||+++|.+   +.+.+++.+++++++....+.+++   ..+.|||+|||++|...+..++.++|++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~---~~v~~iDtPGhe~f~~~~~~g~~~aD~a   77 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAA   77 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC---EEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence            4699999999999999999996   455667788888888777777665   5799999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC-CCCCHHHHHHHHHHcC---CCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG-IANNPAKIDEFIKEHN---FSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der-~~Vs~eei~qlak~~g---~i~ffEtSAK  610 (663)
                      |+|+|++++...+.. .++..+..       .++| +|||+||+|+.+.. .....+++..++..++   ..++|+|||+
T Consensus        78 ILVVDa~~G~~~qT~-ehl~il~~-------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        78 LLVVDADEGVMTQTG-EHLAVLDL-------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             EEEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            999999985432222 22222221       2477 99999999997533 1123445667766654   2589999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q psy4094         611 DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile  628 (663)
                      +|+|+++++.+|...+..
T Consensus       150 tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       150 TGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCCCchhHHHHHHHHHHh
Confidence            999999999998776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK11058 GTPase HflX; Provisional

Probab=99.71  E-value=1.9e-16  Score=173.40  Aligned_cols=159  Identities=19%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch--hhhHHH------HHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF--GNMTRV------YYK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf--rsl~~~------~~r  530 (663)
                      .+|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+.+.  ..+.||||+|..+.  ..++..      .++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~--~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV--GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC--CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            58999999999999999999987655444555666777777777653  25789999998432  233333      368


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      .||++|+|||++++.+++.+..|...+...    ...++|+|+|+||+|+....   . ....  ....+...++++||+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~---~-~~~~--~~~~~~~~~v~ISAk  345 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDF---E-PRID--RDEENKPIRVWLSAQ  345 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCch---h-HHHH--HHhcCCCceEEEeCC
Confidence            899999999999999888887666655532    12468999999999986432   1 1111  112343235899999


Q ss_pred             CCcCHHHHHHHHHHHHHhh
Q psy4094         611 DNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~  629 (663)
                      +|.||++++++|.+.+...
T Consensus       346 tG~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        346 TGAGIPLLFQALTERLSGE  364 (426)
T ss_pred             CCCCHHHHHHHHHHHhhhc
Confidence            9999999999999988654

>cd00880 Era_like Era (E

Probab=99.71  E-value=1.6e-16  Score=140.81  Aligned_cols=151  Identities=19%  Similarity=0.131  Sum_probs=107.6

Q ss_pred             EEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHHHHHhcCcE
Q psy4094         463 VIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTRVYYKEAVG  534 (663)
Q Consensus       463 VLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~~~~r~ADg  534 (663)
                      |+|..|+|||||++++.+.... .........+.....+.....  ..+.+||++|+..+.       .....+++.+|+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~   78 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPL--GPVVLIDTPGIDEAGGLGREREELARRVLERADL   78 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCC--CcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence            5899999999999999976544 334444444454555544432  579999999987654       244558899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHHHHHcCCCeEEEEeCC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI----DEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei----~qlak~~g~i~ffEtSAK  610 (663)
                      +++|+|..+........ |...+.       ..+.|+|+|+||+|+....   .....    ..........+++++||+
T Consensus        79 il~v~~~~~~~~~~~~~-~~~~~~-------~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sa~  147 (163)
T cd00880          79 ILFVVDADLRADEEEEK-LLELLR-------ERGKPVLLVLNKIDLLPEE---EEEELLELRLLILLLLLGLPVIAVSAL  147 (163)
T ss_pred             EEEEEeCCCCCCHHHHH-HHHHHH-------hcCCeEEEEEEccccCChh---hHHHHHHHHHhhcccccCCceEEEeee
Confidence            99999999988777665 443333       2468999999999987643   11111    122223334689999999


Q ss_pred             CCcCHHHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQKI  626 (663)
Q Consensus       611 tGeNVeELFe~IIr~I  626 (663)
                      ++.|+++++.++.+.+
T Consensus       148 ~~~~v~~l~~~l~~~~  163 (163)
T cd00880         148 TGEGIDELREALIEAL  163 (163)
T ss_pred             ccCCHHHHHHHHHhhC
Confidence            9999999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.71  E-value=9.1e-17  Score=153.49  Aligned_cols=150  Identities=18%  Similarity=0.227  Sum_probs=102.5

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhh
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNM  524 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl  524 (663)
                      ....++|+|+|+.|+|||||+++|++..+...+..+.+.......+.+++    .+.+|||+|.          ..|..+
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND----GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC----cEEEEeCCCCccccCChhHHHHHHHH
Confidence            35568999999999999999999998765444444444333222333332    4899999994          335555


Q ss_pred             HHHHHhc---CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcC
Q psy4094         525 TRVYYKE---AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHN  600 (663)
Q Consensus       525 ~~~~~r~---ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g  600 (663)
                      ...|++.   ++++|+|+|++++.+..... ++..+..       .++|+|+|+||+|+.... .....++++..+...+
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~  162 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA  162 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence            5667764   57999999999876666653 2233331       358999999999986421 1223455666666654


Q ss_pred             C-CeEEEEeCCCCcCHH
Q psy4094         601 F-SGWFETSAKDNINID  616 (663)
Q Consensus       601 ~-i~ffEtSAKtGeNVe  616 (663)
                      . ..+|++||++|+|++
T Consensus       163 ~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       163 DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCCceEEEECCCCCCCC
Confidence            2 379999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.71  E-value=1.6e-16  Score=156.56  Aligned_cols=121  Identities=18%  Similarity=0.274  Sum_probs=92.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC-cEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA-VGAFIV  538 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A-DgaILV  538 (663)
                      +|+|+|++|||||+|+++|..+.+...+..+ ...+....+...+. .+.+.|||+|||.+++..+..+|+++ +++|||
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~-~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V   79 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGK-GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV   79 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCC-CceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence            6999999999999999999998876665443 32333222222122 36799999999999999999999999 999999


Q ss_pred             EeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         539 FDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       539 yDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      ||+++. .++..+..|+..+...... ...++|+|||+||+|+...
T Consensus        80 vD~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          80 VDSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhccc
Confidence            999997 6788877776655433211 2257999999999998654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=3.7e-16  Score=171.12  Aligned_cols=164  Identities=16%  Similarity=0.162  Sum_probs=119.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHH---h
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYY---K  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~---r  530 (663)
                      ...|+|||.++||||||++++.+........+..+.....-.+.+++.  ..+.|||+||..    .+..+...|+   .
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhie  235 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIE  235 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHh
Confidence            348999999999999999999976533222222333333334444422  469999999963    2334455554   4


Q ss_pred             cCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         531 EAVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       531 ~ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      .++++|+|+|+++.   ..++.+..|+.+|..+..  ...++|+|||+||+||..     ..+.+..++..++ .++|++
T Consensus       236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~--~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~-~~i~~i  307 (424)
T PRK12297        236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP--RLLERPQIVVANKMDLPE-----AEENLEEFKEKLG-PKVFPI  307 (424)
T ss_pred             hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch--hccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhC-CcEEEE
Confidence            59999999999864   678888889988886522  234689999999999843     2345666777776 479999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         608 SAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      ||+++.|+++++++|.+.+.....
T Consensus       308 SA~tgeGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        308 SALTGQGLDELLYAVAELLEETPE  331 (424)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999988766543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=3.3e-16  Score=169.55  Aligned_cols=162  Identities=19%  Similarity=0.108  Sum_probs=112.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----------hhh-H
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----------GNM-T  525 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----------rsl-~  525 (663)
                      .++|+|+|.+|||||||+++|++... .....++.+.+.....+..++   ..+.+|||+|..+.          ... .
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG---QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC---eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            58999999999999999999997543 234455555565555555554   35789999996432          111 2


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeE
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~f  604 (663)
                      ..+++.+|++|+|+|++++.+.+...- +..+..       .+.|+|||+||+|+.... .....+++...+...+.+++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~~-------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i  321 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRI-AGLALE-------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPI  321 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH-------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCE
Confidence            246789999999999999888777543 333321       358999999999986422 01111222222223344689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      +++||++|.||+++|+.+.+.+....
T Consensus       322 ~~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        322 VFISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999988665443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.69  E-value=3.8e-16  Score=168.33  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=113.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc--------cchhhhHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ--------ERFGNMTRVYYK  530 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ--------Erfrsl~~~~~r  530 (663)
                      +|+|+|.+|||||||+++|++.... ....++++.+.....+.+++.   .+.||||+|.        +.+......+++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~---~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR---EFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe---EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            5899999999999999999987642 233455666666667777664   6999999996        445566777889


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      .+|++|+|+|..++...... .+...++.       .+.|+|||+||+|+.... .    ...+ +..+++..++++||+
T Consensus        78 ~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-------~~~piilVvNK~D~~~~~-~----~~~~-~~~lg~~~~~~vSa~  143 (429)
T TIGR03594        78 EADVILFVVDGREGLTPEDE-EIAKWLRK-------SGKPVILVANKIDGKKED-A----VAAE-FYSLGFGEPIPISAE  143 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------hCCCEEEEEECccCCccc-c----cHHH-HHhcCCCCeEEEeCC
Confidence            99999999999986554432 23333332       358999999999986543 1    1122 345676679999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q psy4094         611 DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile  628 (663)
                      +|.|++++++++.+.+..
T Consensus       144 ~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       144 HGRGIGDLLDAILELLPE  161 (429)
T ss_pred             cCCChHHHHHHHHHhcCc
Confidence            999999999999988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.69  E-value=3.2e-16  Score=161.26  Aligned_cols=160  Identities=16%  Similarity=0.169  Sum_probs=108.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYYK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~r  530 (663)
                      -.|+|+|.+|||||||+++|++..+........+.......+...+  ...+.+|||||.....        ......+.
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4799999999999999999998766432211111112222222223  2579999999975432        23344678


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ++|++++|+|+++...  ....++ ..+.       ..+.|+|+|+||+|+.... ......+..+...++...+|++||
T Consensus        84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~-------~~~~pvilVlNKiDl~~~~-~~l~~~~~~l~~~~~~~~i~~iSA  153 (292)
T PRK00089         84 DVDLVLFVVDADEKIG--PGDEFILEKLK-------KVKTPVILVLNKIDLVKDK-EELLPLLEELSELMDFAEIVPISA  153 (292)
T ss_pred             cCCEEEEEEeCCCCCC--hhHHHHHHHHh-------hcCCCEEEEEECCcCCCCH-HHHHHHHHHHHhhCCCCeEEEecC
Confidence            8999999999998322  222222 2222       2358999999999997432 223445556666566678999999


Q ss_pred             CCCcCHHHHHHHHHHHHHhhh
Q psy4094         610 KDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       610 KtGeNVeELFe~IIr~Ile~~  630 (663)
                      +++.|+++++++|.+.+....
T Consensus       154 ~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        154 LKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             CCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999876543

>KOG3883|consensus

Probab=99.68  E-value=8.2e-16  Score=147.60  Aligned_cols=167  Identities=22%  Similarity=0.322  Sum_probs=138.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCC--CCccccceeeeceeEEEecCCceeEEEEEEeCCCccch-hhhHHHHHhcCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFF--SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-GNMTRVYYKEAV  533 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~f--see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-rsl~~~~~r~AD  533 (663)
                      ...||+|+|..+||||+|+.+++-+..  ..++.+|+. |.+.-.+..+.+-.-.|.||||+|-..+ ..+-.+|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            347999999999999999999874333  356788887 6666677666543456999999997766 778899999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      +++||||..|++||+.+..+-..|..+   .....+||++++||+|+.+.+ .+..+.++.||+.-. +.+++++|..-.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~---KdKKEvpiVVLaN~rdr~~p~-~vd~d~A~~Wa~rEk-vkl~eVta~dR~  161 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKH---KDKKEVPIVVLANKRDRAEPR-EVDMDVAQIWAKREK-VKLWEVTAMDRP  161 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhc---cccccccEEEEechhhcccch-hcCHHHHHHHHhhhh-eeEEEEEeccch
Confidence            999999999999999988766666653   344679999999999998766 788888999998777 589999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy4094         614 NIDDAAKTLVQKILEN  629 (663)
Q Consensus       614 NVeELFe~IIr~Ile~  629 (663)
                      .+-|.|.++..++...
T Consensus       162 sL~epf~~l~~rl~~p  177 (198)
T KOG3883|consen  162 SLYEPFTYLASRLHQP  177 (198)
T ss_pred             hhhhHHHHHHHhccCC
Confidence            9999999999888654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.68  E-value=5.1e-16  Score=179.20  Aligned_cols=159  Identities=18%  Similarity=0.208  Sum_probs=115.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhhhH-
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGNMT-  525 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrsl~-  525 (663)
                      .+||+|+|.+|||||||+++|++.... ....++.+.+.....+.+++.   .+.||||+|+.          .|..+. 
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~---~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE---DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC---EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            379999999999999999999987653 344555666777777777765   46799999953          222222 


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-H---cCC
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-E---HNF  601 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-~---~g~  601 (663)
                      ..+++.+|++|+|||++++.+++.+.-| ..+..       .++|+|||+||+|+....   ..+.....+. .   ...
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-------~~~piIiV~NK~DL~~~~---~~~~~~~~~~~~l~~~~~  595 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD-------AGRALVLVFNKWDLMDEF---RRQRLERLWKTEFDRVTW  595 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCEEEEEEchhcCChh---HHHHHHHHHHHhccCCCC
Confidence            3347889999999999999998887544 33331       358999999999996532   1222222222 1   233


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      .+++++||++|.||+++|+.+.+.+....
T Consensus       596 ~~ii~iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        596 ARRVNLSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            56799999999999999999999876544

>PRK10218 GTP-binding protein; Provisional

Probab=99.68  E-value=7.6e-16  Score=175.12  Aligned_cols=164  Identities=15%  Similarity=0.206  Sum_probs=121.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh--CCCCCcc------------ccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH--QFFSPHY------------RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg--~~fsee~------------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr  522 (663)
                      ...+|+|+|+.++|||||+++|+.  +.+...+            ..+.|+.+....+.+..+ .+.++||||+||.+|.
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-~~~inliDTPG~~df~   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-DYRINIVDTPGHADFG   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-CEEEEEEECCCcchhH
Confidence            357999999999999999999996  3333221            233445555554444433 4789999999999999


Q ss_pred             hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-  601 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-  601 (663)
                      ..+..+++.+|++|||||+++....+....|...+.        .++|+|+|+||+|+...+.....+++..++...+. 
T Consensus        83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~  154 (607)
T PRK10218         83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT  154 (607)
T ss_pred             HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence            999999999999999999998765555444443222        35899999999999876644455666666543221 


Q ss_pred             -----CeEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Q psy4094         602 -----SGWFETSAKDNI----------NIDDAAKTLVQKILEN  629 (663)
Q Consensus       602 -----i~ffEtSAKtGe----------NVeELFe~IIr~Ile~  629 (663)
                           ++++.+||++|.          ++..||+.|++.+..-
T Consensus       155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence                 468999999998          5889999888887543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.68  E-value=5.5e-16  Score=140.73  Aligned_cols=152  Identities=20%  Similarity=0.301  Sum_probs=102.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhhhHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGNMTRVYY  529 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrsl~~~~~  529 (663)
                      .|+|+|+.|+|||||++.++++.+......+.+.......+..++    .+.+||++|..          .+..+...|+
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND----KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL   76 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC----eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence            389999999999999999997666655555655444444444433    68999999943          3455566666


Q ss_pred             hc---CcEEEEEEeCCCcccH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHH-HcCCC
Q psy4094         530 KE---AVGAFIVFDVTRAATF--DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIK-EHNFS  602 (663)
Q Consensus       530 r~---ADgaILVyDVTd~~SF--e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak-~~g~i  602 (663)
                      ..   ++++++++|..+..+.  ..+..|+..+          +.|+++|+||+|+.... .......+...+. .....
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~  146 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP  146 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence            54   5688899999876332  2333444322          38999999999985321 0111222233333 23445


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +++++||+++.++++++++|.+.
T Consensus       147 ~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         147 PIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHh
Confidence            79999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.68  E-value=1.9e-16  Score=172.28  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=111.7

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh--CCC-----------------------------CCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH--QFF-----------------------------SPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg--~~f-----------------------------see~~~TigiDf~~ktV~vdg  504 (663)
                      ...++|+++|+.++|||||+.+|+.  +..                             .++..++++++.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            4568999999999999999999984  211                             123345677777766666543


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHH--HHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ--DLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wie--eL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                         +.++|||++||++|......++..+|++|||||++++.++... .|..  .+...+     ...++|||+||+|+..
T Consensus        85 ---~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~-----~~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        85 ---YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL-----GINQLIVAINKMDSVN  155 (426)
T ss_pred             ---eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc-----CCCeEEEEEEChhccC
Confidence               6899999999999987777788999999999999998644221 1211  122111     1257999999999964


Q ss_pred             CC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHHH
Q psy4094         583 EG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDAA  619 (663)
Q Consensus       583 er---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeELF  619 (663)
                      ..   .....+++..+++..++    ++|++|||++|+||.+++
T Consensus       156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            21   12234667778877764    579999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0071|consensus

Probab=99.68  E-value=5.2e-16  Score=147.19  Aligned_cols=157  Identities=20%  Similarity=0.348  Sum_probs=126.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .++|+++|-.++|||||+..+..+.. ....+|+|  |...+|.+.   ++.|++||++||++.+.+|.+||....++||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtyk---N~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYK---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEee---eeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            48999999999999999999987643 35677777  555666665   4789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKtGe  613 (663)
                      |+|..+++..+.+   ..+|..++......+.++++.+||.|+++..   ..+++..++..-.+    ..+.+++|.+|.
T Consensus        91 V~Dsa~~dr~eeA---r~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~leLe~~r~~~W~vqp~~a~~gd  164 (180)
T KOG0071|consen   91 VVDSADRDRIEEA---RNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLELERIRDRNWYVQPSCALSGD  164 (180)
T ss_pred             EEeccchhhHHHH---HHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhccccccCCccEeeccccccch
Confidence            9999988655554   4555555556666789999999999999865   67777776654321    236789999999


Q ss_pred             CHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKI  626 (663)
Q Consensus       614 NVeELFe~IIr~I  626 (663)
                      ++.|-|.|+.+.+
T Consensus       165 gL~eglswlsnn~  177 (180)
T KOG0071|consen  165 GLKEGLSWLSNNL  177 (180)
T ss_pred             hHHHHHHHHHhhc
Confidence            9999999998865

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=1.6e-15  Score=168.82  Aligned_cols=168  Identities=16%  Similarity=0.120  Sum_probs=118.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHH---HHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTR---VYYK  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~---~~~r  530 (663)
                      ...|+|||.++||||||+++|.+........+..+.+...-.+.+.+   ..|+|||+||...    ...+..   .++.
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~---~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD---TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC---eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            45899999999999999999997654433334444444444555554   4799999999532    222222   2456


Q ss_pred             cCcEEEEEEeCCC----cccHHHHHHHHHHHHhhcCCC-------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc
Q psy4094         531 EAVGAFIVFDVTR----AATFDAVLKWKQDLDAKVTLP-------DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH  599 (663)
Q Consensus       531 ~ADgaILVyDVTd----~~SFe~L~~wieeL~~~~~~~-------~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~  599 (663)
                      +||++|+|+|+++    ++.+..+..|..+|..+....       ...+.|+|||+||+|+.+..  ...+.....+...
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~~~  313 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELEAR  313 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHHHc
Confidence            7999999999985    346777777777777654210       22468999999999997543  1223333344455


Q ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         600 NFSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       600 g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      ++ ++|+|||+++.||++|+.+|.+.+...+.
T Consensus       314 g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        314 GW-PVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             CC-eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            64 79999999999999999999998866543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.66  E-value=1.3e-15  Score=172.90  Aligned_cols=159  Identities=13%  Similarity=0.187  Sum_probs=117.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh--CCCCC--------------ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH--QFFSP--------------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg--~~fse--------------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr  522 (663)
                      .+|+|||+.++|||||+.+|+.  +.+..              +....+++......+.+.+   ++++|||||||.+|.
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~---~kinlIDTPGh~DF~   78 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG---TKINIVDTPGHADFG   78 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC---EEEEEEECCCHHHHH
Confidence            4899999999999999999985  22221              2233444444444555543   689999999999999


Q ss_pred             hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC--
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN--  600 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g--  600 (663)
                      ..+..+++.+|++|||+|+++... .....|+..+..       .++|+|||+||+|+...+.....+++..++..++  
T Consensus        79 ~ev~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~-------~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~  150 (594)
T TIGR01394        79 GEVERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE-------LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD  150 (594)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH-------CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc
Confidence            999999999999999999987543 333455555542       3589999999999976553333455556554322  


Q ss_pred             ----CCeEEEEeCCCCc----------CHHHHHHHHHHHHHh
Q psy4094         601 ----FSGWFETSAKDNI----------NIDDAAKTLVQKILE  628 (663)
Q Consensus       601 ----~i~ffEtSAKtGe----------NVeELFe~IIr~Ile  628 (663)
                          .++++++||++|.          |+..+|+.|++.+..
T Consensus       151 ~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       151 DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence                1479999999996          799999999988754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.66  E-value=2e-15  Score=171.22  Aligned_cols=158  Identities=17%  Similarity=0.107  Sum_probs=103.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEEecC--C----cee-----EEEEEEeCCCccchhhh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVLSWD--H----ETI-----IRLQLWDIAGQERFGNM  524 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV~vd--g----e~~-----vkLqIwDTpGQErfrsl  524 (663)
                      -|+|+|+.++|||||+++|.+..+...    ..+++|..+........  +    ...     ..|.|||||||+.|..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            599999999999999999998776543    23344433322111000  0    001     13889999999999999


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC---C--------CHHH--
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA---N--------NPAK--  591 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~---V--------s~ee--  591 (663)
                      +..+++.+|++|||||+++....+....+ ..+.       ..++|+|||+||+|+......   .        ..+.  
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~-------~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEAL-NILR-------MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHH-------HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99999999999999999984333332211 1222       135899999999998642100   0        0000  


Q ss_pred             ----------HHHHHH-------------HcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         592 ----------IDEFIK-------------EHNFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       592 ----------i~qlak-------------~~g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                                +.++..             ..+..+++++||++|+|+++|+.+|...
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                      011111             1123579999999999999999988654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04167 Snu114p Snu114p subfamily

Probab=99.65  E-value=1.3e-15  Score=150.34  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=105.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc-------------------cccceeeeceeEEEecC--CceeEEEEEEeCCCc
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH-------------------YRATIGVDFALKVLSWD--HETIIRLQLWDIAGQ  518 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee-------------------~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQ  518 (663)
                      +|+|+|+.|+|||||+++|+.......                   ....+.+......+.+.  +...+.++||||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            699999999999999999987543321                   11222222222222222  122588999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCC
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IAN  587 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~V  587 (663)
                      .+|...+..++..+|++|+|||+++..++.. ..|+..+..       .++|+|+|+||+|+....           ...
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~  153 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH  153 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence            9999899999999999999999998877654 344444331       348999999999975211           111


Q ss_pred             CHHHHHHHHHHcCC------Ce----EEEEeCCCCcCHH--------HHHHHHHHH
Q psy4094         588 NPAKIDEFIKEHNF------SG----WFETSAKDNINID--------DAAKTLVQK  625 (663)
Q Consensus       588 s~eei~qlak~~g~------i~----ffEtSAKtGeNVe--------ELFe~IIr~  625 (663)
                      ..+++..++..++.      .+    ++++|++.++.+.        +|++.|++.
T Consensus       154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~  209 (213)
T cd04167         154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN  209 (213)
T ss_pred             HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence            22344445554443      22    6789999998765        555555444

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.65  E-value=5.6e-16  Score=149.21  Aligned_cols=148  Identities=17%  Similarity=0.211  Sum_probs=108.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc------hhhhHHHHH--h
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER------FGNMTRVYY--K  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr------frsl~~~~~--r  530 (663)
                      ++|+++|.++||||||+|++.+........++.+++.....+.+.+.   .+.++|+||.-.      .......|+  .
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~---~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~   77 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ---QVELVDLPGIYSLSSKSEEERVARDYLLSE   77 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE---EEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc---eEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence            58999999999999999999998877777888888888878887764   689999999422      123444444  5


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      ..|++|+|+|+++.+   +-.++..++.+       .++|+|+|.||+|+...+ . ..-....+.+.+++ +++.+||+
T Consensus        78 ~~D~ii~VvDa~~l~---r~l~l~~ql~e-------~g~P~vvvlN~~D~a~~~-g-~~id~~~Ls~~Lg~-pvi~~sa~  144 (156)
T PF02421_consen   78 KPDLIIVVVDATNLE---RNLYLTLQLLE-------LGIPVVVVLNKMDEAERK-G-IEIDAEKLSERLGV-PVIPVSAR  144 (156)
T ss_dssp             SSSEEEEEEEGGGHH---HHHHHHHHHHH-------TTSSEEEEEETHHHHHHT-T-EEE-HHHHHHHHTS--EEEEBTT
T ss_pred             CCCEEEEECCCCCHH---HHHHHHHHHHH-------cCCCEEEEEeCHHHHHHc-C-CEECHHHHHHHhCC-CEEEEEeC
Confidence            899999999998743   22234444443       359999999999986644 1 12235667777885 89999999


Q ss_pred             CCcCHHHHHHHH
Q psy4094         611 DNINIDDAAKTL  622 (663)
Q Consensus       611 tGeNVeELFe~I  622 (663)
                      +++|++++++.|
T Consensus       145 ~~~g~~~L~~~I  156 (156)
T PF02421_consen  145 TGEGIDELKDAI  156 (156)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHhhC
Confidence            999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0462|consensus

Probab=99.65  E-value=7.4e-16  Score=170.15  Aligned_cols=164  Identities=15%  Similarity=0.247  Sum_probs=136.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh---------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH---------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER  520 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg---------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr  520 (663)
                      +...++.||.+...|||||+.|++.               +....+..++|++--....+.+.+.+.+.|+++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5667999999999999999999983               1223356778888777777777655578999999999999


Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN  600 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g  600 (663)
                      |.....+.+..|||+|||+|+..+-.-+.+..++..+.        .++.||.|.||+|++.++.+....++.+++...+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~  209 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--------AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP  209 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999998888887        4588999999999998774444555555555444


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                       .+.+.+||++|.|++++|+.|++++..
T Consensus       210 -~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  210 -AEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             -cceEEEEeccCccHHHHHHHHHhhCCC
Confidence             479999999999999999999998854

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.65  E-value=4.8e-15  Score=171.25  Aligned_cols=154  Identities=17%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~~  528 (663)
                      ..+|+|+|.++||||||+++|++.... ....++++.+.....+.+++   ..+.+|||+|.+.        +......+
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG---TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC---EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            468999999999999999999986542 23345566565555555554   4689999999763        34455667


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++.||++|+|||+++.-.... ..|+..++.       .++|+|||+||+|+....     .....+. ..+....|+||
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iS  417 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPIS  417 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEE
Confidence            899999999999987433222 245555542       468999999999985422     1222222 23433568999


Q ss_pred             CCCCcCHHHHHHHHHHHHHh
Q psy4094         609 AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|.||+++|++|++.+..
T Consensus       418 A~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCCCchHHHHHHHHhccc
Confidence            99999999999999998865

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.65  E-value=8.8e-16  Score=166.84  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCC-------------------------------CCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFF-------------------------------SPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~f-------------------------------see~~~TigiDf~~ktV~vdg  504 (663)
                      +..++|+|+|+.++|||||+++|+...-                               .++..++++++.....+..++
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            3458999999999999999999983211                               123356666676666665543


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                         +.+.|||||||++|...+...+..+|++|||+|+++...+.... .++..+. ..     ...++|||+||+|+...
T Consensus        84 ---~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~-----~~~~iivviNK~Dl~~~  154 (425)
T PRK12317         84 ---YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TL-----GINQLIVAINKMDAVNY  154 (425)
T ss_pred             ---eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-Hc-----CCCeEEEEEEccccccc
Confidence               68999999999998776666788999999999999732222211 2222222 11     11468999999999652


Q ss_pred             C---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHHHH
Q psy4094         584 G---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       584 r---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeELFe  620 (663)
                      .   +....+++.+++...++    .++|++||++|.|+++++.
T Consensus       155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            1   12234566677766664    4799999999999998553

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.64  E-value=4.8e-15  Score=160.81  Aligned_cols=168  Identities=17%  Similarity=0.126  Sum_probs=118.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------hhhHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------GNMTRVYYK  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------rsl~~~~~r  530 (663)
                      ...|+|||.++||||||++++.+........+..+.....-.+.+.+.  ..+.|+||||...-       ....-.++.
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~--~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~  236 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE--RSFVVADIPGLIEGASEGAGLGIRFLKHLE  236 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC--cEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence            348999999999999999999976543333333333333334444432  35899999996431       111223578


Q ss_pred             cCcEEEEEEeCC---CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEE
Q psy4094         531 EAVGAFIVFDVT---RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFE  606 (663)
Q Consensus       531 ~ADgaILVyDVT---d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffE  606 (663)
                      .+|++|+|+|++   +...++.+..|+.++..+..  ...+.|+|||+||+|+....  ...+.+..+...++. ..+|.
T Consensus       237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~--~L~~kP~IlVlNKiDl~~~~--el~~~l~~l~~~~~~~~~Vi~  312 (390)
T PRK12298        237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP--KLAEKPRWLVFNKIDLLDEE--EAEERAKAIVEALGWEGPVYL  312 (390)
T ss_pred             hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh--hhcCCCEEEEEeCCccCChH--HHHHHHHHHHHHhCCCCCEEE
Confidence            899999999998   55678888889888886521  12458999999999986532  223445555555443 26899


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         607 TSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      +||+++.||++++++|++.+.....
T Consensus       313 ISA~tg~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        313 ISAASGLGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             EECCCCcCHHHHHHHHHHHhhhCcc
Confidence            9999999999999999998876543

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.64  E-value=2.2e-15  Score=171.05  Aligned_cols=146  Identities=16%  Similarity=0.176  Sum_probs=113.2

Q ss_pred             eCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh------HHHHHh--cCcEEE
Q psy4094         465 GELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM------TRVYYK--EAVGAF  536 (663)
Q Consensus       465 Gd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl------~~~~~r--~ADgaI  536 (663)
                      |.+|||||||+|++.+..+.....++++.+.....+.+++.   .+++|||||+.++...      ...|+.  .+|++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~---~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE---DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe---EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            89999999999999998776667788888888777777664   5899999999877543      344443  789999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|+|.++.+   +...|..++.+       .++|+|+|+||+|+.+.+ .+ ..+.+.+.+..++ +++++||++|+|++
T Consensus        78 ~VvDat~le---r~l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~-~i-~~d~~~L~~~lg~-pvv~tSA~tg~Gi~  144 (591)
T TIGR00437        78 NVVDASNLE---RNLYLTLQLLE-------LGIPMILALNLVDEAEKK-GI-RIDEEKLEERLGV-PVVPTSATEGRGIE  144 (591)
T ss_pred             EEecCCcch---hhHHHHHHHHh-------cCCCEEEEEehhHHHHhC-CC-hhhHHHHHHHcCC-CEEEEECCCCCCHH
Confidence            999998743   22233333331       358999999999986544 22 2456778888884 89999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         617 DAAKTLVQKI  626 (663)
Q Consensus       617 ELFe~IIr~I  626 (663)
                      ++|+++++.+
T Consensus       145 eL~~~i~~~~  154 (591)
T TIGR00437       145 RLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.64  E-value=6.2e-15  Score=148.88  Aligned_cols=155  Identities=17%  Similarity=0.233  Sum_probs=103.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHHHHHhcC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTRVYYKEA  532 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~~~~r~A  532 (663)
                      +|+|+|.+|||||||+++|.+........+..+.+...-.+.+.+   ..+++||+||+.+..       .....+++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG---AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC---eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            799999999999999999998653322223333344444455554   579999999975332       2334578999


Q ss_pred             cEEEEEEeCCCcc-cHHHHHHHHHHHH-------------------------------------hhcC------------
Q psy4094         533 VGAFIVFDVTRAA-TFDAVLKWKQDLD-------------------------------------AKVT------------  562 (663)
Q Consensus       533 DgaILVyDVTd~~-SFe~L~~wieeL~-------------------------------------~~~~------------  562 (663)
                      |++|+|+|+++.. ..+.+...+..+.                                     ..+.            
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999998765 3333322221110                                     0000            


Q ss_pred             ------------CCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         563 ------------LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       563 ------------~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                                  ..+...+|+|+|+||+|+..      .+++..++..   ..++++||++|.|++++|+.|.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        00123479999999999843      3455555443   2589999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.63  E-value=2.3e-15  Score=148.41  Aligned_cols=149  Identities=19%  Similarity=0.169  Sum_probs=101.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC-------------------------------CccccceeeeceeEEEecCCceeE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS-------------------------------PHYRATIGVDFALKVLSWDHETII  508 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs-------------------------------ee~~~TigiDf~~ktV~vdge~~v  508 (663)
                      +|+|||+.|+|||||+++|+...-.                               .+..+.++++.....+.+.+   .
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---~   77 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---R   77 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC---c
Confidence            5899999999999999999742211                               11224555555555555544   4


Q ss_pred             EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---C
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---I  585 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---~  585 (663)
                      .+.||||||+++|...+...++.+|++|+|+|++++..-+... +...+.. .     ...++|+|+||+|+....   .
T Consensus        78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~-~-----~~~~iIvviNK~D~~~~~~~~~  150 (208)
T cd04166          78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSL-L-----GIRHVVVAVNKMDLVDYSEEVF  150 (208)
T ss_pred             eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHH-c-----CCCcEEEEEEchhcccCCHHHH
Confidence            6889999999998777777889999999999998764322222 1122221 0     113578899999986422   1


Q ss_pred             CCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHHH
Q psy4094         586 ANNPAKIDEFIKEHNF--SGWFETSAKDNINIDDA  618 (663)
Q Consensus       586 ~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeEL  618 (663)
                      .....++..++..+++  .++|+|||++|.|+.+.
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            1223455666677664  35899999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0076|consensus

Probab=99.63  E-value=6.1e-16  Score=150.85  Aligned_cols=162  Identities=23%  Similarity=0.318  Sum_probs=127.0

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC-------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ-------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYY  529 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~-------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~  529 (663)
                      ..|.|+|+|..++|||||+.+....       --.....+|+|.......+.  +   ..|.+||.+||+..+++|..||
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~---~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--N---APLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--c---ceeEEEEcCChHHHHHHHHHHH
Confidence            4589999999999999999887532       11234567777776665554  3   4699999999999999999999


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH---HcC--CCeE
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK---EHN--FSGW  604 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak---~~g--~i~f  604 (663)
                      ..|+++|+++|.+|++.|+....-++.+..   .....++|+++.+||.|+...   +..+++...+.   ..+  ...|
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~---~E~leg~p~L~lankqd~q~~---~~~~El~~~~~~~e~~~~rd~~~  164 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVE---NEKLEGAPVLVLANKQDLQNA---MEAAELDGVFGLAELIPRRDNPF  164 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHH---HHHhcCCchhhhcchhhhhhh---hhHHHHHHHhhhhhhcCCccCcc
Confidence            999999999999999999887765555543   234578999999999999773   34555554444   221  1469


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ..|||.+|+||++..+|++..+..+
T Consensus       165 ~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  165 QPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccchhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999999988765

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.62  E-value=6.5e-15  Score=167.82  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=115.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      -|+++|+.++|||||+++|.+   +.+.++..++++++.....+...+.  ..+.|||+|||++|...+...+..+|++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            589999999999999999986   4555667777877776555555433  35899999999999888888899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCC--CeEEEEeCCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG-IANNPAKIDEFIKEHNF--SGWFETSAKDN  612 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der-~~Vs~eei~qlak~~g~--i~ffEtSAKtG  612 (663)
                      +|+|+++...-+.. ..+..+..       .++| +|||+||+|+.+.. .....+++..++...++  .++|++||++|
T Consensus        80 LVVda~eg~~~qT~-ehl~il~~-------lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG  151 (614)
T PRK10512         80 LVVACDDGVMAQTR-EHLAILQL-------TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG  151 (614)
T ss_pred             EEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence            99999875332222 12222221       2355 57999999996532 12234556666665553  57999999999


Q ss_pred             cCHHHHHHHHHHHHH
Q psy4094         613 INIDDAAKTLVQKIL  627 (663)
Q Consensus       613 eNVeELFe~IIr~Il  627 (663)
                      .|+++|++.|.+...
T Consensus       152 ~gI~~L~~~L~~~~~  166 (614)
T PRK10512        152 RGIDALREHLLQLPE  166 (614)
T ss_pred             CCCHHHHHHHHHhhc
Confidence            999999999986543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.62  E-value=2.1e-15  Score=149.96  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=100.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeeeceeEEEecCCceeE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF-------------------------------FSPHYRATIGVDFALKVLSWDHETII  508 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~-------------------------------fsee~~~TigiDf~~ktV~vdge~~v  508 (663)
                      +|+|+|+.++|||||+.+|+...                               ...+..+.++.+.....+.+.+   .
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---~   77 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---Y   77 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC---e
Confidence            48999999999999999996311                               1122344555566566666544   5


Q ss_pred             EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      .+.+|||+|+.+|...+...++.+|++|+|+|+++..       ..+....|. .+..      ....|+|+|+||+|+.
T Consensus        78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~iiivvNK~Dl~  150 (219)
T cd01883          78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART------LGVKQLIVAVNKMDDV  150 (219)
T ss_pred             EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH------cCCCeEEEEEEccccc
Confidence            8999999999988877777888999999999999852       112222222 1221      1126899999999997


Q ss_pred             CCC-----CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHH
Q psy4094         582 KEG-----IANNPAKIDEFIKEHNF----SGWFETSAKDNINID  616 (663)
Q Consensus       582 der-----~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVe  616 (663)
                      ...     +....+++..++...++    .++++|||++|.||+
T Consensus       151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            321     11123344445555554    569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.60  E-value=2.3e-14  Score=144.59  Aligned_cols=114  Identities=19%  Similarity=0.234  Sum_probs=83.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEecCC-------ceeEEEEEEeCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSWDH-------ETIIRLQLWDIA  516 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~vdg-------e~~vkLqIwDTp  516 (663)
                      +|+|+|+.++|||||+.+|+...-                ..+..+.+++......+.+..       +..+.++|||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999985321                112223344333333333331       125789999999


Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ||++|......+++.+|++|+|||++++...+....|.....        .++|+|||+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--------~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--------ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--------cCCCEEEEEECCCcc
Confidence            999999999999999999999999999877766444433222        348999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.59  E-value=1.9e-14  Score=142.01  Aligned_cols=147  Identities=16%  Similarity=0.133  Sum_probs=102.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr  522 (663)
                      ++|+++|+.++|||||+++|+...                ...+..+.++++.....+..++   ..+.++||||+.+|.
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~---~~i~~iDtPG~~~~~   79 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN---RHYAHVDCPGHADYI   79 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC---eEEEEEECcCHHHHH
Confidence            799999999999999999998531                0122345555555444444333   478999999999998


Q ss_pred             hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHHHc
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIKEH  599 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak~~  599 (663)
                      ......+..+|++|+|+|+.....-+... ++..+..       .++| +|+|.||+|+....  .....+++..++...
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-------~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~  151 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ-------VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY  151 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-------cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            88888889999999999998764433322 2233332       3466 78999999985322  112234566676666


Q ss_pred             CC----CeEEEEeCCCCcCHH
Q psy4094         600 NF----SGWFETSAKDNINID  616 (663)
Q Consensus       600 g~----i~ffEtSAKtGeNVe  616 (663)
                      ++    ++++++||++|.|+.
T Consensus       152 g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         152 GFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             cccccCCeEEEeeCccccCCC
Confidence            54    689999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.59  E-value=1.1e-14  Score=158.12  Aligned_cols=165  Identities=19%  Similarity=0.171  Sum_probs=107.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCC---CCccccceeeeceeEEE--------------ec----CCc-----eeEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVL--------------SW----DHE-----TIIRL  510 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~f---see~~~TigiDf~~ktV--------------~v----dge-----~~vkL  510 (663)
                      ..++|+++|+.++|||||+++|.+...   .++..+.++++.....+              ..    ++.     ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            458999999999999999999865322   22323333322211100              01    110     12579


Q ss_pred             EEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCH
Q psy4094         511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNP  589 (663)
Q Consensus       511 qIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~  589 (663)
                      .|||+|||++|...+...+..+|++|||+|++++.........+..+..    .  ...++|+|+||+|+.... .....
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~----~--gi~~iIVvvNK~Dl~~~~~~~~~~  156 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI----I--GIKNIVIVQNKIDLVSKEKALENY  156 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH----c--CCCeEEEEEEccccCCHHHHHHHH
Confidence            9999999999998888889999999999999975311111222222221    1  114689999999987532 11123


Q ss_pred             HHHHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         590 AKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       590 eei~qlak~~g--~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      +++..++..+.  .++++++||++|+|+++++++|...+.
T Consensus       157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            44455554431  247999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.58  E-value=3.1e-15  Score=164.74  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=111.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF-------------------------------FSPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~-------------------------------fsee~~~TigiDf~~ktV~vdg  504 (663)
                      +..++|+++|+.++|||||+.+|+...                               ..++..+.++++.....+..+ 
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-   83 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-   83 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-
Confidence            345899999999999999999887311                               122344556666655554443 


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCC-
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPK-  582 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~d-  582 (663)
                        ...+.|+|+|||++|...+...+..+|++|||+|+++ ..|+....|..+.+.|+......++ ++|||+||+|+.+ 
T Consensus        84 --~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 --KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP  160 (447)
T ss_pred             --CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence              3689999999999999999999999999999999987 3343322222222222211122456 4788999999862 


Q ss_pred             ----CCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094         583 ----EGIANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD  617 (663)
Q Consensus       583 ----er~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE  617 (663)
                          .++....++++.++...|+    ++|+++||++|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                2223346778888888774    5799999999999864

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.58  E-value=2e-14  Score=156.52  Aligned_cols=166  Identities=19%  Similarity=0.196  Sum_probs=106.9

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC---CCCCccccceeeeceeEEEec------------------C--C---ceeE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDFALKVLSW------------------D--H---ETII  508 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~TigiDf~~ktV~v------------------d--g---e~~v  508 (663)
                      .+..++|+++|+.++|||||+.+|.+.   ...++..+.++++.......+                  +  +   ....
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            445699999999999999999888653   122233344443322111111                  0  1   0025


Q ss_pred             EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-C
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-A  586 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~  586 (663)
                      .++|||||||++|..........+|++|+|+|++++. ..+....| ..+.. .     ...++|+|+||+|+..... .
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~-~-----~i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDI-I-----GIKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHH-c-----CCCcEEEEEEeeccccchhHH
Confidence            7899999999998776666667789999999999753 22222222 12221 0     1136899999999865321 1


Q ss_pred             CCHHHHHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         587 NNPAKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       587 Vs~eei~qlak~~g--~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ...+++..++..+.  ..++|++||++|.|+++||++|...+.
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            12244555554331  257999999999999999999988764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=6.7e-14  Score=137.56  Aligned_cols=156  Identities=32%  Similarity=0.401  Sum_probs=125.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCC--------CC----ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFF--------SP----HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN  523 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~f--------se----e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs  523 (663)
                      ....||+|+|.-++||||+++++.....        ..    ....|+.+||....+..+    ..+.++|||||+||+.
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~----~~v~LfgtPGq~RF~f   83 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED----TGVHLFGTPGQERFKF   83 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc----ceEEEecCCCcHHHHH
Confidence            3457999999999999999999986442        11    223567778777666533    4589999999999999


Q ss_pred             hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CC
Q psy4094         524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FS  602 (663)
Q Consensus       524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i  602 (663)
                      +|..+++++.++|+++|.+.+..| .....+..+...      ..+|+++++||.||....   ..+.++++..... -.
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------~~ip~vVa~NK~DL~~a~---ppe~i~e~l~~~~~~~  153 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------NPIPVVVAINKQDLFDAL---PPEKIREALKLELLSV  153 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------cCCCEEEEeeccccCCCC---CHHHHHHHHHhccCCC
Confidence            999999999999999999999998 555555555521      229999999999999865   7788888887762 36


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +.|+++|.+++++.+.++.+...
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ceeeeecccchhHHHHHHHHHhh
Confidence            89999999999999988888765

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.57  E-value=4.6e-14  Score=164.52  Aligned_cols=153  Identities=17%  Similarity=0.144  Sum_probs=115.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh----------hHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN----------MTRV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs----------l~~~  527 (663)
                      .++|+++|++|||||||+|++.+........+.++++.....+..++   ..+.+||+||+.++..          +...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~---~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD---HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc---eEEEEEECCCccccccccccccHHHHHHHH
Confidence            37899999999999999999998766544556666665555555443   5789999999876642          1233


Q ss_pred             HH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094         528 YY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       528 ~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff  605 (663)
                      ++  ..+|++|+|+|.++.+.   ...|..++.+       .++|+|+|+||+|+.+.+ . ......++.+.+++ +++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e-------~giPvIvVlNK~Dl~~~~-~-i~id~~~L~~~LG~-pVv  146 (772)
T PRK09554         80 YILSGDADLLINVVDASNLER---NLYLTLQLLE-------LGIPCIVALNMLDIAEKQ-N-IRIDIDALSARLGC-PVI  146 (772)
T ss_pred             HHhccCCCEEEEEecCCcchh---hHHHHHHHHH-------cCCCEEEEEEchhhhhcc-C-cHHHHHHHHHHhCC-CEE
Confidence            43  37999999999988543   2234455542       358999999999987544 2 24556778888885 899


Q ss_pred             EEeCCCCcCHHHHHHHHHHHH
Q psy4094         606 ETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~I  626 (663)
                      ++||.+|+|++++++.+.+..
T Consensus       147 piSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        147 PLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEeecCCCHHHHHHHHHHhh
Confidence            999999999999999987754

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.57  E-value=5.2e-14  Score=142.80  Aligned_cols=112  Identities=19%  Similarity=0.248  Sum_probs=82.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC------------------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      +|+|+|+.|+|||||+++|+...-.                  .+..+.+++......+.+.+   +.+++|||||+.+|
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~---~~i~liDTPG~~~f   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED---TKVNLIDTPGHMDF   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC---EEEEEEeCCCccch
Confidence            5899999999999999999853110                  11222333333344444433   68999999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      ...+..+++.+|++|+|+|+++...... ..|+..+..       .++|+|+|+||+|+..
T Consensus        78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~-~~~~~~~~~-------~~~P~iivvNK~D~~~  130 (237)
T cd04168          78 IAEVERSLSVLDGAILVISAVEGVQAQT-RILWRLLRK-------LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccccC
Confidence            9999999999999999999998765433 344444442       3589999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.56  E-value=3.4e-14  Score=161.22  Aligned_cols=155  Identities=21%  Similarity=0.194  Sum_probs=102.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEEec--CCceeE----------EEEEEeCCCccchh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVLSW--DHETII----------RLQLWDIAGQERFG  522 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV~v--dge~~v----------kLqIwDTpGQErfr  522 (663)
                      -.|+|+|+.++|||||+++|.+..+...    +.+++|..+.......  .+. .+          .+.|||||||+.|.
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGP-LKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccce-eccccccccccCCEEEEECCChHHHH
Confidence            4699999999999999999987654322    2334554433221110  010 01          26899999999999


Q ss_pred             hhHHHHHhcCcEEEEEEeCCC---cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCC----------
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTR---AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANN----------  588 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd---~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs----------  588 (663)
                      .++..+++.+|++|||||+++   +.+++.+.    .+.       ..++|+|+|+||+|+..... ...          
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~-------~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK-------RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH-------HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            999999999999999999998   34444432    222       13589999999999853110 000          


Q ss_pred             ----H-------HHHHHHHHHc--------------CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         589 ----P-------AKIDEFIKEH--------------NFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       589 ----~-------eei~qlak~~--------------g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                          .       .++..++..+              +..+++++||++|.|++++++.+...
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                0       0111122222              23579999999999999999988653

>KOG0074|consensus

Probab=99.55  E-value=1.9e-14  Score=136.90  Aligned_cols=159  Identities=24%  Similarity=0.286  Sum_probs=123.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...++|+++|-.++|||||+.++.+... .+..+|.|  |..+.+..++.  ++|++||++||...+..|..||.+.|++
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g~--f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDGT--FHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecCc--EEEEEEecCCccccchhhhhhhhccceE
Confidence            4569999999999999999999876532 34455655  77888888874  8999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKD  611 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKt  611 (663)
                      |+|+|.+|...|+.+..-+.+|..   ......+|+++.+||.|+.-+-   ..+++..-++..++    ..+-+|||..
T Consensus        90 IyVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa---~~eeia~klnl~~lrdRswhIq~csals  163 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAA---KVEEIALKLNLAGLRDRSWHIQECSALS  163 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhc---chHHHHHhcchhhhhhceEEeeeCcccc
Confidence            999999999999988765555553   2334569999999999986532   33333333333322    3567899999


Q ss_pred             CcCHHHHHHHHHHH
Q psy4094         612 NINIDDAAKTLVQK  625 (663)
Q Consensus       612 GeNVeELFe~IIr~  625 (663)
                      ++++..-.+|+...
T Consensus       164 ~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  164 LEGSTDGSDWVQSN  177 (185)
T ss_pred             ccCccCcchhhhcC
Confidence            99999888887653

>PRK12736 elongation factor Tu; Reviewed

Probab=99.54  E-value=8.5e-14  Score=150.65  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=111.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .+..++|+++|+.++|||||+++|++..                ..++..+.++++.....+..+   ...+.|||||||
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~---~~~i~~iDtPGh   85 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE---KRHYAHVDCPGH   85 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC---CcEEEEEECCCH
Confidence            3456899999999999999999998521                112334555555544443332   346899999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF  595 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql  595 (663)
                      ++|.......+..+|++|+|+|+++...-+....| ..+..       .++| +|||+||+|+....  .....+++..+
T Consensus        86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~-------~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~  157 (394)
T PRK12736         86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ-------VGVPYLVVFLNKVDLVDDEELLELVEMEVREL  157 (394)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHH-------cCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence            99987777778899999999999875443333222 23331       3577 67899999986422  11123456667


Q ss_pred             HHHcCC----CeEEEEeCCCCc--------CHHHHHHHHHHHHH
Q psy4094         596 IKEHNF----SGWFETSAKDNI--------NIDDAAKTLVQKIL  627 (663)
Q Consensus       596 ak~~g~----i~ffEtSAKtGe--------NVeELFe~IIr~Il  627 (663)
                      +...++    ++++++||++|.        ++.+|++.+.+.+.
T Consensus       158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            666664    579999999983        57777777776654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.53  E-value=7.8e-14  Score=150.70  Aligned_cols=148  Identities=17%  Similarity=0.158  Sum_probs=102.5

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .+..++|+++|+.++|||||+++|++.                ...++..+.++++.....+.  .. ...+.|||||||
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~--~~-~~~~~liDtpGh   85 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE--TE-NRHYAHVDCPGH   85 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc--CC-CEEEEEEECCch
Confidence            345689999999999999999999732                11233446666665444433  22 357899999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEG--IANNPAKIDEF  595 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der--~~Vs~eei~ql  595 (663)
                      ++|...+...+..+|++|+|+|++++...+....| ..+..       .++|.| +|+||+|+.+..  .....+++..+
T Consensus        86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~  157 (394)
T TIGR00485        86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence            99987777777889999999999985444433222 22321       246755 789999986532  11123467777


Q ss_pred             HHHcCC----CeEEEEeCCCCc
Q psy4094         596 IKEHNF----SGWFETSAKDNI  613 (663)
Q Consensus       596 ak~~g~----i~ffEtSAKtGe  613 (663)
                      +..+++    ++++++||.+|.
T Consensus       158 l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       158 LSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHhcCCCccCccEEECcccccc
Confidence            777764    689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.53  E-value=1.1e-13  Score=149.81  Aligned_cols=161  Identities=14%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC-------C---------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ-------F---------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~-------~---------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .+..++|+++|+.++|||||+++|++.       .         ..++..+.++++.....+..++   ..+.|+|||||
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~---~~i~~iDtPGh   85 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN---RHYAHVDCPGH   85 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC---cEEEEEECCCH
Confidence            345689999999999999999999851       1         1123355666665444444333   46899999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEG--IANNPAKIDEF  595 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der--~~Vs~eei~ql  595 (663)
                      ++|.......+..+|++|+|+|+.+...-+.. .++..+.       ..++|.| +|+||+|+....  .....+++..+
T Consensus        86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~-------~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~  157 (396)
T PRK12735         86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLAR-------QVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHH-------HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence            99887777788899999999999875433332 2333333       1347755 689999996421  11223456677


Q ss_pred             HHHcCC----CeEEEEeCCCCc----------CHHHHHHHHHHHH
Q psy4094         596 IKEHNF----SGWFETSAKDNI----------NIDDAAKTLVQKI  626 (663)
Q Consensus       596 ak~~g~----i~ffEtSAKtGe----------NVeELFe~IIr~I  626 (663)
                      +..+++    .+|+++||++|.          ++.+|++.|.+.+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            777653    579999999985          4667777776654

>KOG1707|consensus

Probab=99.52  E-value=3.1e-14  Score=158.46  Aligned_cols=166  Identities=19%  Similarity=0.199  Sum_probs=122.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..++|+|+|+.||||||||..++.+.|.++-.+-...  ......+..+ .+...|.|+...+.-+.....-+++||++.
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe-~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPE-NVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcC-cCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3489999999999999999999999887654433221  1111222222 355889999877666666678899999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeEEEEeCCCCcC
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGWFETSAKDNIN  614 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~ffEtSAKtGeN  614 (663)
                      +||+++++.+++.+. .|+..|++...  ...++||||||||+|+...........+..+...+. +-..|+|||++..|
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            999999999999996 89999986531  225799999999999977653312223445554443 22469999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4094         615 IDDAAKTLVQKIL  627 (663)
Q Consensus       615 VeELFe~IIr~Il  627 (663)
                      +.|+|....+.++
T Consensus       163 ~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  163 VSELFYYAQKAVI  175 (625)
T ss_pred             hHhhhhhhhheee
Confidence            9999998877654

>PRK13351 elongation factor G; Reviewed

Probab=99.51  E-value=1.5e-13  Score=158.06  Aligned_cols=117  Identities=24%  Similarity=0.342  Sum_probs=87.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCC-------------CC-----ccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFF-------------SP-----HYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~f-------------se-----e~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      +...+|+|+|+.|+|||||+++|+...-             ..     +....+++......+.+.   .+.++||||||
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~---~~~i~liDtPG   82 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD---NHRINLIDTPG   82 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC---CEEEEEEECCC
Confidence            3567999999999999999999985211             00     011222333333344443   36899999999


Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      +.+|...+..+++.+|++|+|+|+++...++....|.. +.       ..++|+|+|+||+|+...
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~-------~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-AD-------RYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH-------hcCCCEEEEEECCCCCCC
Confidence            99999999999999999999999999888777666633 33       135899999999998653

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.51  E-value=2e-13  Score=137.53  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=99.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccc--------------cc---------eeeeceeE---------------EEe
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYR--------------AT---------IGVDFALK---------------VLS  501 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~--------------~T---------igiDf~~k---------------tV~  501 (663)
                      ||+|+|+.++|||||+.+|..+.|.....              ..         +|.+..-+               .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999999766643111              11         11111111               111


Q ss_pred             cCCceeEEEEEEeCCCccchhhhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         502 WDHETIIRLQLWDIAGQERFGNMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       502 vdge~~vkLqIwDTpGQErfrsl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      ..   ...+.++|+||+++|.......+.  .+|++|+|+|+..+..-.. ..++..+..       .++|+|+|.||+|
T Consensus        81 ~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~-------~~ip~ivvvNK~D  149 (224)
T cd04165          81 KS---SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA-------LNIPVFVVVTKID  149 (224)
T ss_pred             eC---CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEECcc
Confidence            11   246899999999998766555554  6899999999987654222 233333332       3489999999999


Q ss_pred             CCCCC-CCCCHHHHHHHHHH-------------------------cCCCeEEEEeCCCCcCHHHHHHHHH
Q psy4094         580 QPKEG-IANNPAKIDEFIKE-------------------------HNFSGWFETSAKDNINIDDAAKTLV  623 (663)
Q Consensus       580 L~der-~~Vs~eei~qlak~-------------------------~g~i~ffEtSAKtGeNVeELFe~II  623 (663)
                      +.... .....+++..++..                         ...+++|.+||.+|+|+++|...|.
T Consensus       150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            85432 12222333333331                         1134899999999999999988774

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.50  E-value=3.6e-13  Score=147.25  Aligned_cols=150  Identities=17%  Similarity=0.180  Sum_probs=114.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccch---------hhhHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF---------GNMTRVY  528 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf---------rsl~~~~  528 (663)
                      ..|+|||.++||||||+||+++.... .+..++++-|-......+.+.   .+.++||+|-+..         +......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~---~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR---EFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc---eEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            37999999999999999999997765 456677777877778888775   5999999996532         2344556


Q ss_pred             HhcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         529 YKEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      +..||++|||+|...+-+-..  +..|+   +       ..+.|+|||+||+|-..      .+....-+..+|+..++.
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~L---r-------~~~kpviLvvNK~D~~~------~e~~~~efyslG~g~~~~  144 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKIL---R-------RSKKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVP  144 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHH---H-------hcCCCEEEEEEcccCch------hhhhHHHHHhcCCCCceE
Confidence            788999999999987654333  22333   2       13589999999999642      223333344567778999


Q ss_pred             EeCCCCcCHHHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Il  627 (663)
                      +||.+|.|+.+|++.++..+.
T Consensus       145 ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         145 ISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eehhhccCHHHHHHHHHhhcC
Confidence            999999999999999999874

>COG1159 Era GTPase [General function prediction only]

Probab=99.48  E-value=3.9e-13  Score=140.55  Aligned_cols=161  Identities=17%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYY  529 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~  529 (663)
                      .--|+|||.++||||||+|++++.+..-....--+.....+.+...+.  ..+.++||||-.+-+        ......+
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            357999999999999999999998876433333333444444554443  679999999943222        2233346


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ..+|+++||+|+++...-  -..| ++.|+.       .+.|+|++.||+|..... ......+..+...+.+...+++|
T Consensus        84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~-------~~~pvil~iNKID~~~~~-~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          84 KDVDLILFVVDADEGWGP--GDEFILEQLKK-------TKTPVILVVNKIDKVKPK-TVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             ccCcEEEEEEeccccCCc--cHHHHHHHHhh-------cCCCeEEEEEccccCCcH-HHHHHHHHHHHhhCCcceEEEee
Confidence            789999999999974332  2223 333331       357999999999987654 11234444555556666899999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~  630 (663)
                      |++|.|++.|.+.+...+.+..
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCC
Confidence            9999999999999988876654

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.48  E-value=1.7e-13  Score=148.88  Aligned_cols=149  Identities=19%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC---------------------------------CCccccceeeeceeEEEecCCc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF---------------------------------SPHYRATIGVDFALKVLSWDHE  505 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f---------------------------------see~~~TigiDf~~ktV~vdge  505 (663)
                      ++|+++|+.++|||||+.+|+...-                                 .++..+.++++.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            5899999999999999999973210                                 122334455565555555543 


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI  585 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~  585 (663)
                        ..+.|||||||++|...+...+..+|++|||+|+..+..-+....|.. +..    .+  ..++|||+||+|+.....
T Consensus        80 --~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~-~~~----~~--~~~iivviNK~D~~~~~~  150 (406)
T TIGR02034        80 --RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI-ASL----LG--IRHVVLAVNKMDLVDYDE  150 (406)
T ss_pred             --eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH-HHH----cC--CCcEEEEEEecccccchH
Confidence              478999999999998777778899999999999987654333333321 211    11  136899999999864221


Q ss_pred             C---CCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Q psy4094         586 A---NNPAKIDEFIKEHNF--SGWFETSAKDNINIDD  617 (663)
Q Consensus       586 ~---Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeE  617 (663)
                      .   ...+++..++...++  .+++++||++|+|+++
T Consensus       151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            1   112334444555553  4699999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>CHL00071 tufA elongation factor Tu

Probab=99.48  E-value=5.7e-13  Score=144.94  Aligned_cols=150  Identities=15%  Similarity=0.106  Sum_probs=106.0

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .+..++|+++|+.++|||||+++|++.                ....+..++++++.....+..++   ..+.|.|||||
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---~~~~~iDtPGh   85 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN---RHYAHVDCPGH   85 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC---eEEEEEECCCh
Confidence            455699999999999999999999863                11233446666665554444433   46889999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF  595 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql  595 (663)
                      .+|...+...+..+|++|+|+|+.....-+... ++..+.       ..++| +|+|.||+|+....  .....+++..+
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~-------~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~  157 (409)
T CHL00071         86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAK-------QVGVPNIVVFLNKEDQVDDEELLELVELEVREL  157 (409)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHH-------HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            999887888889999999999998754333322 223333       13478 77999999986522  11223466677


Q ss_pred             HHHcCC----CeEEEEeCCCCcCH
Q psy4094         596 IKEHNF----SGWFETSAKDNINI  615 (663)
Q Consensus       596 ak~~g~----i~ffEtSAKtGeNV  615 (663)
                      +...++    .+++++||.+|.|+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhcccc
Confidence            776654    67999999999754

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.47  E-value=4.3e-13  Score=127.83  Aligned_cols=136  Identities=21%  Similarity=0.307  Sum_probs=100.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----cchhhhHHHHHhcCcEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----ERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----Erfrsl~~~~~r~ADga  535 (663)
                      ||+|||..|+|||||++++.+...  .|..|..+.|..             .++||||.    ..|..-......+||.+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~-------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V   67 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD-------------NTIDTPGEYIENPRFYHALIVTAQDADVV   67 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc-------------cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence            899999999999999999988644  455554434322             35788873    33444444455689999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      ++|.|.+++.++---     .+.      ...+.|+|-|.||+|+..+  ....+.++++++..|+-..|++|+.+|+||
T Consensus        68 ~ll~dat~~~~~~pP-----~fa------~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~~~if~vS~~~~eGi  134 (143)
T PF10662_consen   68 LLLQDATEPRSVFPP-----GFA------SMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGVKEIFEVSAVTGEGI  134 (143)
T ss_pred             EEEecCCCCCccCCc-----hhh------cccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence            999999986542211     111      1234899999999999832  246788889999999988999999999999


Q ss_pred             HHHHHHHH
Q psy4094         616 DDAAKTLV  623 (663)
Q Consensus       616 eELFe~II  623 (663)
                      ++|.++|-
T Consensus       135 ~eL~~~L~  142 (143)
T PF10662_consen  135 EELKDYLE  142 (143)
T ss_pred             HHHHHHHh
Confidence            99999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03126 Elongation factor Tu; Provisional

Probab=99.47  E-value=5.6e-13  Score=148.22  Aligned_cols=150  Identities=15%  Similarity=0.081  Sum_probs=106.8

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .+..++|+++|+.++|||||+++|+..                ...++..+.++++.....+..++   ..+.|||+|||
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~---~~i~liDtPGh  154 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN---RHYAHVDCPGH  154 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC---cEEEEEECCCH
Confidence            456789999999999999999999851                11234455666665555555443   47899999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF  595 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql  595 (663)
                      ++|...+...+..+|++|||+|+.+...-+....| ..+..       .++| +|||.||+|+....  .....+++..+
T Consensus       155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~-------~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~  226 (478)
T PLN03126        155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ-------VGVPNMVVFLNKQDQVDDEELLELVELEVREL  226 (478)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence            99988888888999999999999987554443333 33331       3577 78899999986521  12223356666


Q ss_pred             HHHcC----CCeEEEEeCCCCcCH
Q psy4094         596 IKEHN----FSGWFETSAKDNINI  615 (663)
Q Consensus       596 ak~~g----~i~ffEtSAKtGeNV  615 (663)
                      +...+    .++|+.+||.+|.|+
T Consensus       227 l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        227 LSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHhcCCCcCcceEEEEEccccccc
Confidence            66653    257999999998654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.47  E-value=5.2e-13  Score=147.19  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=107.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vdg  504 (663)
                      ...++|+++|+.++|||||+.+|+..                               ...++..+.++++.....+..++
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            44589999999999999999998741                               11223445566666555555543


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc-------HHHHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT-------FDAVLKWKQDLDAKVTLPDGNPIP-CVLLAN  576 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S-------Fe~L~~wieeL~~~~~~~~~~~IP-IILVGN  576 (663)
                         ..+.|+|+|||++|...+...+..+|++|||+|++.+..       -+....|. .+.       ..++| +|+|.|
T Consensus        85 ---~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~-------~~gi~~iiv~vN  153 (446)
T PTZ00141         85 ---YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAF-------TLGVKQMIVCIN  153 (446)
T ss_pred             ---eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHH-------HcCCCeEEEEEE
Confidence               579999999999998888888999999999999987531       12333333 222       13465 679999


Q ss_pred             CCCCCC-----CCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094         577 KCDQPK-----EGIANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD  617 (663)
Q Consensus       577 KsDL~d-----er~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE  617 (663)
                      |+|...     +++....+++..++...++    ++|+++||.+|+|+.+
T Consensus       154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            999532     3333445666666666654    5799999999999964

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.47  E-value=5.7e-13  Score=137.94  Aligned_cols=141  Identities=19%  Similarity=0.226  Sum_probs=97.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC------------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF------------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~------------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      +|+|+|+.|+|||||+++++...                  ...+..+.++++.....+.+.+   ..+.+|||||+.+|
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG~~df   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD---HRINIIDTPGHVDF   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC---EEEEEEECCCcHHH
Confidence            58999999999999999997311                  1123345555565566666654   57899999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~  601 (663)
                      ...+..+++.+|++|+|+|+.+...-+... ++..+.       ..++|+|+|+||+|+.........++++..+....+
T Consensus        78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~-------~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~  149 (270)
T cd01886          78 TIEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQAD-------RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPV  149 (270)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce
Confidence            999999999999999999998865433322 223333       245899999999998754322233444444433333


Q ss_pred             CeEEEEeCCC
Q psy4094         602 SGWFETSAKD  611 (663)
Q Consensus       602 i~ffEtSAKt  611 (663)
                      ..++++|+..
T Consensus       150 ~~~~Pisa~~  159 (270)
T cd01886         150 PLQLPIGEED  159 (270)
T ss_pred             EEEeccccCC
Confidence            3466777753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=2.4e-13  Score=148.72  Aligned_cols=165  Identities=19%  Similarity=0.248  Sum_probs=130.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHh---------------CCCCCccccceeeeceeEEEecC--CceeEEEEEEeCCC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVH---------------QFFSPHYRATIGVDFALKVLSWD--HETIIRLQLWDIAG  517 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg---------------~~fsee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpG  517 (663)
                      .+...++.||.+-..|||||..|++.               +..+-+..+++++-.....+.+.  +++.+.|+++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34556899999999999999999973               22334566777766655555442  33479999999999


Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK  597 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak  597 (663)
                      |.+|.....+.+..|.|+|||+|++.+-.-+.+...+..|.        .+.-||-|.||+||+...   .....+++-.
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle--------~~LeIiPViNKIDLP~Ad---pervk~eIe~  154 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPAAD---PERVKQEIED  154 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH--------cCcEEEEeeecccCCCCC---HHHHHHHHHH
Confidence            99999888999999999999999999988899988888777        357899999999998865   2333334444


Q ss_pred             HcCC--CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         598 EHNF--SGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       598 ~~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ..|+  ...+.||||+|.||+++++.|++.+..-.
T Consensus       155 ~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         155 IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             HhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence            4443  35799999999999999999999986543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.45  E-value=1.2e-12  Score=143.23  Aligned_cols=162  Identities=19%  Similarity=0.111  Sum_probs=119.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhh-h
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGN-M  524 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrs-l  524 (663)
                      ..+||+|||.++||||||+|+++++.-. ....++.+.|.-...+.+++.   ++.++||+|..          .|.. -
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~---~~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR---KYVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe---EEEEEECCCCCcccccccceEEEeehh
Confidence            4589999999999999999999986544 455677777887888888876   68999999943          3322 2


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHHcCC
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---IANNPAKIDEFIKEHNF  601 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---~~Vs~eei~qlak~~g~  601 (663)
                      ....+..+|+|+||+|++.+-+-+.+.- ...+.       ..+.++|+|.||+|+.+..   .....+++...+...++
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~-------~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~  325 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDLRI-AGLIE-------EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF  325 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH-------HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence            3345678999999999998876655432 12222       2458999999999987642   12223345555556677


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      .+.+.+||++|.+++++|+.+....-..
T Consensus       326 a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         326 APIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             CeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            8899999999999999999987765443

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.45  E-value=2.1e-12  Score=145.22  Aligned_cols=115  Identities=18%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh--CCCC--------------------CccccceeeeceeEEEecCCceeEEEEEEe
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH--QFFS--------------------PHYRATIGVDFALKVLSWDHETIIRLQLWD  514 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg--~~fs--------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwD  514 (663)
                      ...+|+|||+.++|||||+.+|+.  +...                    .+..+++.+......+.+.   .+.+++||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~---~~~inliD   85 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR---DCLINLLD   85 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC---CEEEEEEE
Confidence            457999999999999999999973  1100                    0111222223333334443   36899999


Q ss_pred             CCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       515 TpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      |||+.+|......+++.+|++|+|+|+++...... ..++....       ..++|+|+++||+|+..
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~-------~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT-RKLMEVCR-------LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH-HHHHHHHH-------hcCCCEEEEEECCcccc
Confidence            99999999888889999999999999998643322 23333332       24699999999999754

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.44  E-value=2.4e-12  Score=126.10  Aligned_cols=161  Identities=18%  Similarity=0.166  Sum_probs=99.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceee-ece--eEEEecCCceeEEEEEEeCCCccchhhhHHH-----HHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV-DFA--LKVLSWDHETIIRLQLWDIAGQERFGNMTRV-----YYK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tigi-Df~--~ktV~vdge~~vkLqIwDTpGQErfrsl~~~-----~~r  530 (663)
                      +||+|+|.+|||||||++.+++..+.......++. ...  ...+....  ...+.+||++|..........     .+.
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK--FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC--CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            79999999999999999999986554332222221 111  11111111  236899999997543222222     366


Q ss_pred             cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHH--
Q psy4094         531 EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI----------ANNPAKIDEFIK--  597 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~----------~Vs~eei~qlak--  597 (663)
                      ++|++|+|.|    ..|.... .|+..+..       .+.|+++|+||+|+.....          ....+++++.+.  
T Consensus        80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~-------~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  148 (197)
T cd04104          80 EYDFFIIISS----TRFSSNDVKLAKAIQC-------MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN  148 (197)
T ss_pred             CcCEEEEEeC----CCCCHHHHHHHHHHHH-------hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence            7898888743    2344433 55565553       2479999999999842110          011222222222  


Q ss_pred             --HcC--CCeEEEEeCC--CCcCHHHHHHHHHHHHHhhhhh
Q psy4094         598 --EHN--FSGWFETSAK--DNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       598 --~~g--~i~ffEtSAK--tGeNVeELFe~IIr~Ile~~k~  632 (663)
                        ..+  ...+|.+|+.  .+.|+..|.+.|+..+.++++.
T Consensus       149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence              222  2468999998  6799999999999999887653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04169 RF3 RF3 subfamily

Probab=99.44  E-value=3.2e-12  Score=132.12  Aligned_cols=115  Identities=19%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC----------------------CccccceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS----------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIA  516 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs----------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTp  516 (663)
                      .+|+|+|+.|+|||||+++++...-.                      .+..+.+.+......+.+.   .+.++||||+
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~---~~~i~liDTP   79 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR---DCVINLLDTP   79 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC---CEEEEEEECC
Confidence            58999999999999999999742110                      0111122222233334433   3689999999


Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      |+.+|......+++.+|++|+|+|+++...... ..|+..+.       ..++|+|+++||+|+....
T Consensus        80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~-------~~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR-------LRGIPIITFINKLDREGRD  139 (267)
T ss_pred             CchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH-------hcCCCEEEEEECCccCCCC
Confidence            999998888888999999999999987644322 23333332       2458999999999986643

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.43  E-value=6.6e-13  Score=147.37  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=101.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCC---------------------------------CccccceeeeceeEEEec
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFS---------------------------------PHYRATIGVDFALKVLSW  502 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs---------------------------------ee~~~TigiDf~~ktV~v  502 (663)
                      +..++|+++|+.++|||||+.+|+...-.                                 ++..+.++++.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45689999999999999999999742110                                 122334555555555544


Q ss_pred             CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      ++   ..+.|||||||++|...+...+..+|++|||+|+..+..-+....|.. +. .   .+  -.++|||+||+|+..
T Consensus       105 ~~---~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l-~~-~---lg--~~~iIvvvNKiD~~~  174 (474)
T PRK05124        105 EK---RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFI-AT-L---LG--IKHLVVAVNKMDLVD  174 (474)
T ss_pred             CC---cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHH-HH-H---hC--CCceEEEEEeecccc
Confidence            43   478999999999997777777899999999999987543222222221 11 1   11  147899999999864


Q ss_pred             CCCC---CCHHHHHHHHHHcC---CCeEEEEeCCCCcCHHHH
Q psy4094         583 EGIA---NNPAKIDEFIKEHN---FSGWFETSAKDNINIDDA  618 (663)
Q Consensus       583 er~~---Vs~eei~qlak~~g---~i~ffEtSAKtGeNVeEL  618 (663)
                      ....   ...+++..++...+   ..+++++||++|.|+.++
T Consensus       175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            3211   11223333344433   357999999999999875

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.42  E-value=1.5e-12  Score=133.20  Aligned_cols=153  Identities=17%  Similarity=0.276  Sum_probs=100.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc------------------cccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH------------------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee------------------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      +|+|+|+.|+|||||+++++.......                  ....+++......+.+.+   +.++||||+|+.+|
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~---~~i~liDtPG~~~f   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG---HKINLIDTPGYADF   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC---EEEEEEECcCHHHH
Confidence            589999999999999999975321110                  112223333333444433   57999999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~  601 (663)
                      ...+..+++.+|++|+|+|+++.........|. .+.       ..++|+++|+||+|+....   ..+....+...++.
T Consensus        78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~-------~~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~  146 (268)
T cd04170          78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD-------EAGIPRIIFINKMDRERAD---FDKTLAALQEAFGR  146 (268)
T ss_pred             HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH-------HcCCCEEEEEECCccCCCC---HHHHHHHHHHHhCC
Confidence            888999999999999999999877665554443 222       2358999999999987643   22333444444443


Q ss_pred             -CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         602 -SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       602 -i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                       +-.+.+....|.|+..+.+.+...+
T Consensus       147 ~~~~~~ip~~~~~~~~~~vd~~~~~~  172 (268)
T cd04170         147 PVVPLQLPIGEGDDFKGVVDLLTEKA  172 (268)
T ss_pred             CeEEEEecccCCCceeEEEEcccCEE
Confidence             1234445666666655555444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG3905|consensus

Probab=99.42  E-value=4.9e-13  Score=141.04  Aligned_cols=167  Identities=19%  Similarity=0.316  Sum_probs=132.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC-ceeEEEEEEeCCCccchhhhHHHHHhcC----cE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH-ETIIRLQLWDIAGQERFGNMTRVYYKEA----VG  534 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg-e~~vkLqIwDTpGQErfrsl~~~~~r~A----Dg  534 (663)
                      +|+|+|+.|+||||||.++.+.   +++...-|.+|....|.-+. ....++.+|-..|..-+..+....+...    -.
T Consensus        54 ~VlvlGdn~sGKtsLi~klqg~---e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   54 NVLVLGDNGSGKTSLISKLQGS---ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             eEEEEccCCCchhHHHHHhhcc---cccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            7999999999999999999874   36667777777655554321 1247899999999988888887776544    37


Q ss_pred             EEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCC----------------------------------------------
Q psy4094         535 AFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGN----------------------------------------------  567 (663)
Q Consensus       535 aILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~----------------------------------------------  567 (663)
                      +||+.|+++++. ++.+..|+..+++|+.....+                                              
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            889999999954 788999998888886543221                                              


Q ss_pred             -----------CCcEEEEEeCCCCC----------CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         568 -----------PIPCVLLANKCDQP----------KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       568 -----------~IPIILVGNKsDL~----------der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                                 ++||+||++|||+.          +++++.++..++.||-.+|. .+|++|++...||+-|+.+|++++
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHh
Confidence                       79999999999972          23356677889999999996 699999999999999999999998


Q ss_pred             Hhhh
Q psy4094         627 LEND  630 (663)
Q Consensus       627 le~~  630 (663)
                      +...
T Consensus       290 yG~~  293 (473)
T KOG3905|consen  290 YGFP  293 (473)
T ss_pred             cCcc
Confidence            7653

>PRK00049 elongation factor Tu; Reviewed

Probab=99.42  E-value=2.5e-12  Score=139.47  Aligned_cols=159  Identities=14%  Similarity=0.152  Sum_probs=107.7

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      ...++|+++|+.++|||||+++|+...                ..++..+.++++.....+..++   ..+.|+||||+.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~---~~i~~iDtPG~~   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK---RHYAHVDCPGHA   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC---eEEEEEECCCHH
Confidence            456899999999999999999998621                1123356666665544444333   468899999999


Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEG--IANNPAKIDEFI  596 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der--~~Vs~eei~qla  596 (663)
                      +|.......+..+|++|+|+|+.++..-+.. .++..+..       .++|+| ++.||+|+....  ......++..++
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~-------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l  158 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH-------cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence            9887777888999999999999876443332 23333332       347875 689999986421  111223555666


Q ss_pred             HHcCC----CeEEEEeCCCCcC----------HHHHHHHHHHH
Q psy4094         597 KEHNF----SGWFETSAKDNIN----------IDDAAKTLVQK  625 (663)
Q Consensus       597 k~~g~----i~ffEtSAKtGeN----------VeELFe~IIr~  625 (663)
                      ...++    .+++.+||++|.|          +..+++.|...
T Consensus       159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            65543    5799999998763          45666555543

>KOG0072|consensus

Probab=99.41  E-value=3.8e-13  Score=128.39  Aligned_cols=160  Identities=22%  Similarity=0.279  Sum_probs=117.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ...+|+++|-.|+|||+++-++.-+.. ....+++|  |..-.+.+.   ++.+++||.+||-..+..|+-||.+.|++|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtig--fnve~v~yK---NLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIG--FNVETVPYK---NLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCC--cCccccccc---cccceeeEccCcccccHHHHHHhcccceEE
Confidence            447999999999999999988764433 24567776  444445543   478999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----cCCCeEEEEeCCC
Q psy4094         537 IVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE----HNFSGWFETSAKD  611 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~----~g~i~ffEtSAKt  611 (663)
                      +|+|.+|++........ +..|.    ...-++..++|++||.|....-   ...++...+..    .....+|++||.+
T Consensus        91 yVVDssd~dris~a~~el~~mL~----E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k  163 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQ----EEELQHAKLLVFANKQDYSGAL---TRSEVLKMLGLQKLKDRIWQIVKTSAVK  163 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhc----cHhhcCceEEEEeccccchhhh---hHHHHHHHhChHHHhhheeEEEeecccc
Confidence            99999998766554433 23333    2233457889999999976532   33333222211    1225799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |+|+++.++|+++.+..+
T Consensus       164 g~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  164 GEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccCCcHHHHHHHHHHhcc
Confidence            999999999999987543

>PLN03127 Elongation factor Tu; Provisional

Probab=99.41  E-value=3.3e-12  Score=140.95  Aligned_cols=161  Identities=14%  Similarity=0.077  Sum_probs=108.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      +..++|+++|+.++|||||+++|.+.                ...++..++++++.....+..++   ..+.|+|||||.
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---~~i~~iDtPGh~  135 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK---RHYAHVDCPGHA  135 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC---eEEEEEECCCcc
Confidence            45689999999999999999999621                11234456777776555554433   478999999999


Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFI  596 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qla  596 (663)
                      +|...+...+..+|++|||+|+.+...-+. ...+..+.       ..++| +|+|.||+|+....  .....+++..++
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~-------~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l  207 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR-------QVGVPSLVVFLNKVDVVDDEELLELVEMELRELL  207 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHH-------HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            987777777788999999999987643333 22222232       23478 57899999986422  011122444555


Q ss_pred             HHcCC----CeEEEEeCC---CCcC-------HHHHHHHHHHHHH
Q psy4094         597 KEHNF----SGWFETSAK---DNIN-------IDDAAKTLVQKIL  627 (663)
Q Consensus       597 k~~g~----i~ffEtSAK---tGeN-------VeELFe~IIr~Il  627 (663)
                      ..+++    ++++.+||.   +|.|       +.+|++.|.+.+.
T Consensus       208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            54432    578888876   5555       6777777766543

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.41  E-value=1.5e-12  Score=148.64  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC---------------------------------CccccceeeeceeEEEecC
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS---------------------------------PHYRATIGVDFALKVLSWD  503 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---------------------------------ee~~~TigiDf~~ktV~vd  503 (663)
                      ..++|+|+|+.++|||||+++|+...-.                                 ++..++++++.....+..+
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            4589999999999999999999852211                                 1122344445544445444


Q ss_pred             CceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         504 HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       504 ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      +   ..+.|+||||+++|...+...+..+|++|||+|+..+..-+....|. .+...      ...++|||.||+|+...
T Consensus       103 ~---~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~------~~~~iivvvNK~D~~~~  172 (632)
T PRK05506        103 K---RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL------GIRHVVLAVNKMDLVDY  172 (632)
T ss_pred             C---ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh------CCCeEEEEEEecccccc
Confidence            4   46889999999998777777789999999999998754332222222 22211      12578999999998642


Q ss_pred             C---CCCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Q psy4094         584 G---IANNPAKIDEFIKEHNF--SGWFETSAKDNINIDD  617 (663)
Q Consensus       584 r---~~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeE  617 (663)
                      .   ......++..+...+++  .+++++||++|.|+++
T Consensus       173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1   11122334445555554  4699999999999984

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.40  E-value=2.4e-12  Score=148.42  Aligned_cols=143  Identities=17%  Similarity=0.225  Sum_probs=100.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCC------------------CccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      +...+|+|+|+.++|||||+++|+...-.                  .+..+.++++.....+.+.+   ..++||||||
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~---~~i~liDTPG   84 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG---HRINIIDTPG   84 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC---eEEEEEECCC
Confidence            45679999999999999999999741110                  12234566666666666654   5799999999


Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK  597 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak  597 (663)
                      +.+|...+..+++.+|++|||+|+++....+...-|. .+.       ..++|+|||+||+|+....   ......++..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~-------~~~~p~ivviNK~D~~~~~---~~~~~~~i~~  153 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QAN-------RYEVPRIAFVNKMDKTGAN---FLRVVNQIKQ  153 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHH-------HcCCCEEEEEECCCCCCCC---HHHHHHHHHH
Confidence            9999888999999999999999999877766554443 233       1358999999999997643   1223333444


Q ss_pred             HcCC---CeEEEEeCCCC
Q psy4094         598 EHNF---SGWFETSAKDN  612 (663)
Q Consensus       598 ~~g~---i~ffEtSAKtG  612 (663)
                      .++.   ...+.+|+..+
T Consensus       154 ~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       154 RLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HhCCCceeEEeccccCCC
Confidence            3333   22456666555

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.39  E-value=3.5e-12  Score=139.52  Aligned_cols=161  Identities=16%  Similarity=0.247  Sum_probs=129.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhC--CC--------------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQ--FF--------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~--~f--------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      ..+|+||.+...|||||+..++.+  .|              +.+..++|++--....+.+++   ++++|+|||||.+|
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~---~~INIvDTPGHADF   81 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG---TRINIVDTPGHADF   81 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC---eEEEEecCCCcCCc
Confidence            458999999999999999999842  22              224455666666666677766   68999999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~  601 (663)
                      .....+.+..+|+++|++|+.+...-+.-..+-+.|.        .+++.|||.||+|.+..|......++..++..++.
T Consensus        82 GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A  153 (603)
T COG1217          82 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGA  153 (603)
T ss_pred             cchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999877666555555665        34777999999999998866666777777777654


Q ss_pred             ------CeEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Q psy4094         602 ------SGWFETSAKDNI----------NIDDAAKTLVQKILEN  629 (663)
Q Consensus       602 ------i~ffEtSAKtGe----------NVeELFe~IIr~Ile~  629 (663)
                            +++++.||..|.          ++.-||+.|++++..-
T Consensus       154 ~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         154 TDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             ChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence                  579999999884          8999999999988654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=6.2e-12  Score=139.58  Aligned_cols=157  Identities=18%  Similarity=0.221  Sum_probs=121.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      .=|+++|+...|||||+..+-.........-.++-....+.+.++....-.|.|+|||||+-|..++.+-..-+|++|||
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            36899999999999999999887776666666776777777777511124689999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC--------CeEEEEeCC
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--------SGWFETSAK  610 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~--------i~ffEtSAK  610 (663)
                      +|++|.-.-+++... ..+       ...++|+|++.||+|..+..    ...+..-+..+|+        ..|+++||+
T Consensus        86 Va~dDGv~pQTiEAI-~ha-------k~a~vP~iVAiNKiDk~~~n----p~~v~~el~~~gl~~E~~gg~v~~VpvSA~  153 (509)
T COG0532          86 VAADDGVMPQTIEAI-NHA-------KAAGVPIVVAINKIDKPEAN----PDKVKQELQEYGLVPEEWGGDVIFVPVSAK  153 (509)
T ss_pred             EEccCCcchhHHHHH-HHH-------HHCCCCEEEEEecccCCCCC----HHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence            999997655554322 112       24679999999999998543    4444444445554        469999999


Q ss_pred             CCcCHHHHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQKIL  627 (663)
Q Consensus       611 tGeNVeELFe~IIr~Il  627 (663)
                      +|+|+.+|++.|+-..-
T Consensus       154 tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         154 TGEGIDELLELILLLAE  170 (509)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998876543

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.37  E-value=1e-11  Score=131.83  Aligned_cols=167  Identities=19%  Similarity=0.240  Sum_probs=107.0

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEE---------------EecCCceeEEEEEEeCCCc-
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKV---------------LSWDHETIIRLQLWDIAGQ-  518 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~kt---------------V~vdge~~vkLqIwDTpGQ-  518 (663)
                      |+|||.++||||||+++|.+..+.      ..+.+++|+.+....               ..+++...+.++|||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999987643      234556665543221               1123333478999999997 


Q ss_pred             ---cchhhhHHHH---HhcCcEEEEEEeCCCc-------------c---cHHH----HHHH-HHH---------------
Q psy4094         519 ---ERFGNMTRVY---YKEAVGAFIVFDVTRA-------------A---TFDA----VLKW-KQD---------------  556 (663)
Q Consensus       519 ---Erfrsl~~~~---~r~ADgaILVyDVTd~-------------~---SFe~----L~~w-iee---------------  556 (663)
                         .++..+...|   +++||++|+|+|+...             +   .++.    +..| +..               
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               5566666665   8999999999999731             0   1111    1122 000               


Q ss_pred             ---------------------HHhhcCC---C------------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy4094         557 ---------------------LDAKVTL---P------------------DGNPIPCVLLANKCDQPKEGIANNPAKIDE  594 (663)
Q Consensus       557 ---------------------L~~~~~~---~------------------~~~~IPIILVGNKsDL~der~~Vs~eei~q  594 (663)
                                           +..++..   .                  .....|+|+|+||+|+....     +....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~-----~~~~~  235 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE-----NNISK  235 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH-----HHHHH
Confidence                                 0000000   0                  01357999999999975322     12223


Q ss_pred             HHHHcCCCeEEEEeCCCCcCHHHHHH-HHHHHHHhhhhh
Q psy4094         595 FIKEHNFSGWFETSAKDNINIDDAAK-TLVQKILENDKV  632 (663)
Q Consensus       595 lak~~g~i~ffEtSAKtGeNVeELFe-~IIr~Ile~~k~  632 (663)
                      +........++.+||+.+.+++++.+ .+++.+......
T Consensus       236 l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f  274 (318)
T cd01899         236 LRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF  274 (318)
T ss_pred             HHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence            33344445799999999999999998 688888765443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.35  E-value=4.7e-12  Score=129.17  Aligned_cols=171  Identities=22%  Similarity=0.268  Sum_probs=109.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-----hHHHHHhcCc
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-----MTRVYYKEAV  533 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-----l~~~~~r~AD  533 (663)
                      ||+++|..++||||+.+.+..+.... ...-..+.+.....+...+.  +.|+|||+|||..+..     .....+++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~--~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF--LPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS--CEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC--cEEEEEEcCCccccccccccccHHHHHhccC
Confidence            79999999999999998777654332 22223344555555555554  7899999999976543     4688899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----CCCCHHHHHHHHHHcC--CCeEEE
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----IANNPAKIDEFIKEHN--FSGWFE  606 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----~~Vs~eei~qlak~~g--~i~ffE  606 (663)
                      ++|+|+|+.+.+-.+.+..+...+.....  ..+++.+-++.+|+|+..+.     +....+.+.+.+...+  .+.|+.
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~--~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQ--YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHHHHHHH--HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             EEEEEEEcccccHHHHHHHHHHHHHHHHH--hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            99999999965555554444333332211  24678999999999985421     1112334444555554  246888


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHhhhhhhhc
Q psy4094         607 TSAKDNINIDDAAKTLVQKILENDKVQAN  635 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile~~k~~~~  635 (663)
                      ||... +.+-+.|..|++.++.+....+.
T Consensus       157 TSI~D-~Sly~A~S~Ivq~LiP~~~~le~  184 (232)
T PF04670_consen  157 TSIWD-ESLYEAWSKIVQKLIPNLSTLEN  184 (232)
T ss_dssp             E-TTS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred             ccCcC-cHHHHHHHHHHHHHcccHHHHHH
Confidence            98876 79999999999999877665443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01850 CDC_Septin CDC/Septin

Probab=99.34  E-value=8.3e-12  Score=129.65  Aligned_cols=143  Identities=17%  Similarity=0.280  Sum_probs=93.0

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc----------cccceeeeceeEEEecCCceeEEEEEEeCCCccchhh---
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH----------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN---  523 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee----------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs---  523 (663)
                      ..|+|+|+|+.|+|||||+++|++..+...          ...|++++.....+..++. .+.|.||||+|-.++..   
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~-~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV-KLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE-EEEEEEEecCCccccccchh
Confidence            358999999999999999999998776533          4566666766667766664 68999999999432211   


Q ss_pred             ----hH-------------------HHHHh--cCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         524 ----MT-------------------RVYYK--EAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       524 ----l~-------------------~~~~r--~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                          +.                   ...+.  .+|+++++++.+.. .+... ...+..+.        ..+|+|+|+||
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~--------~~v~vi~VinK  152 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS--------KRVNIIPVIAK  152 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh--------ccCCEEEEEEC
Confidence                10                   01222  36677777776542 11111 22233332        14899999999


Q ss_pred             CCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         578 CDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       578 sDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      +|+... ......+.+.+.+..+++ .+|.....
T Consensus       153 ~D~l~~~e~~~~k~~i~~~l~~~~i-~~~~~~~~  185 (276)
T cd01850         153 ADTLTPEELKEFKQRIMEDIEEHNI-KIYKFPED  185 (276)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHcCC-ceECCCCC
Confidence            998542 113445667788888885 67776553

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG1423|consensus

Probab=99.33  E-value=2.2e-11  Score=128.01  Aligned_cols=168  Identities=20%  Similarity=0.194  Sum_probs=110.0

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc------chh-----
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE------RFG-----  522 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE------rfr-----  522 (663)
                      ...+.+.|+|||.++||||||.|.+++...........+.....--+...++  +.+.||||||-.      ++.     
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHh
Confidence            3456789999999999999999999998887665555544443434444443  689999999932      111     


Q ss_pred             -hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC------------CCC-
Q psy4094         523 -NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI------------ANN-  588 (663)
Q Consensus       523 -sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~------------~Vs-  588 (663)
                       ......+.+||++++|+|+++....-.. ..+..+..+      ..+|-|||.||+|....+.            ... 
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~  218 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK  218 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence             1223456789999999999974432221 223334433      3488999999999754331            111 


Q ss_pred             -HHHHHHHHHHc-------------CCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         589 -PAKIDEFIKEH-------------NFSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       589 -~eei~qlak~~-------------g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                       .-++++-....             ++..+|.+||++|+||+++-++|+.++....
T Consensus       219 ~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  219 LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence             11111111111             1234899999999999999999998875543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.33  E-value=2.4e-11  Score=133.43  Aligned_cols=152  Identities=20%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------hHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------MTRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------l~~~~  528 (663)
                      -+||+|+|.++||||||+|.|++..-. ....++.+-|+..-.+.++|   +.+.|.||+|..+-..        .....
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G---~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG---IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC---EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            489999999999999999999986544 45667777788888888888   5899999999654332        23345


Q ss_pred             HhcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         529 YKEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      +.+||.+|+|+|.+.... .+....|   +       ...+.|+++|.||.||....   .....    .......++.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~~~---~-------~~~~~~~i~v~NK~DL~~~~---~~~~~----~~~~~~~~i~i  356 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLALIE---L-------LPKKKPIIVVLNKADLVSKI---ELESE----KLANGDAIISI  356 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHHHH---h-------cccCCCEEEEEechhccccc---ccchh----hccCCCceEEE
Confidence            788999999999998632 2222122   1       13568999999999997754   11111    21222358999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhh
Q psy4094         608 SAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ||++|.|++.|.+.|.+.+...
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999998877665

>TIGR00503 prfC peptide chain release factor 3

Probab=99.32  E-value=3.5e-12  Score=143.43  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=80.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh--CCCCC------------------ccccceeeeceeEEEecCCceeEEEEEEeC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH--QFFSP------------------HYRATIGVDFALKVLSWDHETIIRLQLWDI  515 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg--~~fse------------------e~~~TigiDf~~ktV~vdge~~vkLqIwDT  515 (663)
                      ....+|+|||+.++|||||+.+|+.  +....                  ......|+.+....+.++.+ .+.++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-DCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-CeEEEEEEC
Confidence            3457999999999999999999863  11100                  00111222333333333322 368999999


Q ss_pred             CCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       516 pGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      ||+.+|......+++.+|++|+|+|+++...-. ...|+..+.       ..++|+|+++||+|+...
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-------~~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR-------LRDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH-------hcCCCEEEEEECccccCC
Confidence            999999887888899999999999998753222 233333333       245899999999998653

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.32  E-value=1.3e-11  Score=137.06  Aligned_cols=168  Identities=19%  Similarity=0.343  Sum_probs=127.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC-ceeEEEEEEeCCCccchhhhHHHHHhcC----c
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH-ETIIRLQLWDIAGQERFGNMTRVYYKEA----V  533 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg-e~~vkLqIwDTpGQErfrsl~~~~~r~A----D  533 (663)
                      -.|+|+|+.++|||||+.+|.+.   +++..+.|.+|....+.-++ ....++.||-..|...+..+....+...    -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            37999999999999999998753   45677888888665554332 2246799999998777777776655432    4


Q ss_pred             EEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCC-----------------------------------------------
Q psy4094         534 GAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPD-----------------------------------------------  565 (663)
Q Consensus       534 gaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~-----------------------------------------------  565 (663)
                      ++|||.|++.++. ++.+..|+..|+.++....                                               
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            7889999999987 4567777766665542200                                               


Q ss_pred             -----------CCCCcEEEEEeCCCCC----------CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094         566 -----------GNPIPCVLLANKCDQP----------KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       566 -----------~~~IPIILVGNKsDL~----------der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr  624 (663)
                                 .-++||+||++|+|..          +++++..++.++.+|-.||+ .+|+||++...|++.|+.+|.+
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence                       0058999999999952          12345667788999999996 6999999999999999999999


Q ss_pred             HHHhhh
Q psy4094         625 KILEND  630 (663)
Q Consensus       625 ~Ile~~  630 (663)
                      +++...
T Consensus       262 ~l~~~~  267 (472)
T PF05783_consen  262 RLYGFP  267 (472)
T ss_pred             HhccCC
Confidence            987654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.31  E-value=1.5e-11  Score=136.45  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=110.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEE---------------ecCCc----e-------
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVL---------------SWDHE----T-------  506 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV---------------~vdge----~-------  506 (663)
                      ...++|.++|+..+|||||+..|.+   ..+.++..+.++++......               .+...    .       
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            3458999999999999999999986   33445555555544422211               01100    0       


Q ss_pred             ----eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         507 ----IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       507 ----~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                          ...+.|+|+|||++|...+...+..+|++|||+|+.++ ...+....|. .+. .+   +  -.++|||.||+|+.
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~-~l---g--i~~iIVvlNKiDlv  184 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVE-IM---K--LKHIIILQNKIDLV  184 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHH-Hc---C--CCcEEEEEeccccc
Confidence                13689999999999988888888899999999999975 2333333332 222 11   1  13689999999986


Q ss_pred             CCC-CCCCHHHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         582 KEG-IANNPAKIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       582 der-~~Vs~eei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      +.. .....+++..++..+  ...++|++||++|.|+++|++.|...+.
T Consensus       185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            422 111233444444332  2357999999999999999999987554

>PRK12740 elongation factor G; Reviewed

Probab=99.31  E-value=1.2e-11  Score=141.84  Aligned_cols=108  Identities=20%  Similarity=0.322  Sum_probs=81.8

Q ss_pred             EeCCCCCHHHHHHHHHhCCC------------------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhH
Q psy4094         464 IGELGAGKTSIIKRYVHQFF------------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMT  525 (663)
Q Consensus       464 LGd~GVGKTSLInrLlg~~f------------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~  525 (663)
                      ||+.++|||||+++|+...-                  ..+..+++++......+.+.+   +.++||||||+.+|...+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~i~liDtPG~~~~~~~~   77 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG---HKINLIDTPGHVDFTGEV   77 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC---EEEEEEECCCcHHHHHHH
Confidence            69999999999999963211                  112234555555556666654   689999999999998888


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      ..+++.+|++|+|+|+++...+.....|.. +.       ..++|+|+|+||+|+..
T Consensus        78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~-~~-------~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQ-AE-------KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHHhCeEEEEEeCCCCcCHHHHHHHHH-HH-------HcCCCEEEEEECCCCCC
Confidence            999999999999999998877766555532 22       13589999999999864

>PRK12739 elongation factor G; Reviewed

Probab=99.31  E-value=1.8e-11  Score=141.43  Aligned_cols=118  Identities=21%  Similarity=0.280  Sum_probs=89.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCC------------------CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFF------------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~f------------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      +...+|+|||+.++|||||+++|+...-                  ..+..+.++++.....+.+++   ..+.+|||||
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG   82 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG---HRINIIDTPG   82 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC---EEEEEEcCCC
Confidence            4568999999999999999999974210                  112355666676666777654   5799999999


Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      +.+|...+...++.+|++|+|+|+.+...-+...-|. .+.       ..++|+||++||+|+....
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~-~~~-------~~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWR-QAD-------KYGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHH-HHH-------HcCCCEEEEEECCCCCCCC
Confidence            9999889999999999999999999876555443333 222       1358999999999998643

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=5.2e-12  Score=136.86  Aligned_cols=155  Identities=16%  Similarity=0.176  Sum_probs=111.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHH-------------------------------hCCCCCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYV-------------------------------HQFFSPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLl-------------------------------g~~fsee~~~TigiDf~~ktV~vdg  504 (663)
                      ...+++++||+..+|||||+.||+                               .+...++..++++++.....+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            456899999999999999999986                               1233456667777777777766554


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc---HHHHH--HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT---FDAVL--KWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S---Fe~L~--~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                         +.|.|+|+|||.+|-..+..-+.+||++|||+|+.+.+.   |..-.  +-+..|...   .+  --.+|++.||.|
T Consensus        85 ---~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---lG--i~~lIVavNKMD  156 (428)
T COG5256          85 ---YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---LG--IKQLIVAVNKMD  156 (428)
T ss_pred             ---ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---cC--CceEEEEEEccc
Confidence               689999999999998888888999999999999987632   21100  111112211   11  135799999999


Q ss_pred             CCC---CCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094         580 QPK---EGIANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDA  618 (663)
Q Consensus       580 L~d---er~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeEL  618 (663)
                      +.+   +|+.....++..+.+..|+    ++|++|||..|.|+.+.
T Consensus       157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            875   2334445556666666665    46999999999998763

>KOG1145|consensus

Probab=99.27  E-value=9.8e-11  Score=130.24  Aligned_cols=159  Identities=14%  Similarity=0.146  Sum_probs=122.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      =|-|+|+...|||||+..|-+........-+|+-.+....+.++.+  -.+.|.|||||.-|..++.+-..-+|+++||+
T Consensus       155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVV  232 (683)
T KOG1145|consen  155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVV  232 (683)
T ss_pred             eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEE
Confidence            4888999999999999999887776666666766777778888754  47899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH------c-CCCeEEEEeCCCC
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE------H-NFSGWFETSAKDN  612 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~------~-g~i~ffEtSAKtG  612 (663)
                      .+.|.-.-+.+.    .|. |   ....++||||+.||||.+...   .....++++..      + |.+..+++||++|
T Consensus       233 AadDGVmpQT~E----aIk-h---Ak~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  233 AADDGVMPQTLE----AIK-H---AKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EccCCccHhHHH----HHH-H---HHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            999976555542    232 1   234679999999999987644   33334444332      2 2367899999999


Q ss_pred             cCHHHHHHHHHHHHHhhhh
Q psy4094         613 INIDDAAKTLVQKILENDK  631 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k  631 (663)
                      .|++.|-+.++-++..+.-
T Consensus       302 ~nl~~L~eaill~Ae~mdL  320 (683)
T KOG1145|consen  302 ENLDLLEEAILLLAEVMDL  320 (683)
T ss_pred             CChHHHHHHHHHHHHHhhc
Confidence            9999999988776655443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.27  E-value=2.4e-11  Score=119.92  Aligned_cols=120  Identities=22%  Similarity=0.327  Sum_probs=74.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHH---HHhcCcEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRV---YYKEAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~---~~r~ADgaI  536 (663)
                      .|+|+|+.|+|||+|+.+|..+.+.+.+... ....   .+.+.....-.+.++|+|||++.+.....   +..++.++|
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            6999999999999999999998655443333 1111   12221111246899999999988764443   588999999


Q ss_pred             EEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         537 IVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       537 LVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      ||+|.+. ...+..+.+++-.+...... ....+||+|++||.|+...+
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~-~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEV-QKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHC-CTT--EEEEEEE-TTSTT--
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhh-ccCCCCEEEEEeCccccccC
Confidence            9999974 44555555555444433322 24579999999999986644

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.26  E-value=3.7e-11  Score=139.50  Aligned_cols=126  Identities=20%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC---------------CCCC-cccc--ceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ---------------FFSP-HYRA--TIGVDFALKVLSWDHETIIRLQLWDIA  516 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---------------~fse-e~~~--TigiDf~~ktV~vdge~~vkLqIwDTp  516 (663)
                      .+...+|+|+|+.++|||||+++|+..               .+.. +..+  |+...+....+.+++. .+.++|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~-~~~i~liDTP   94 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGN-EYLINLIDTP   94 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCC-ceEEEEEeCC
Confidence            345689999999999999999999742               1111 1112  3322222223334443 5789999999


Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCH
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNP  589 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~  589 (663)
                      |+.+|......+++.+|++|+|+|+.+....+....|.....        .++|+|+|+||+|..........
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~~~~~~~~  159 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--------ENVKPVLFINKVDRLINELKLTP  159 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--------cCCCEEEEEEChhcccchhcCCH
Confidence            999999888999999999999999988655444434432222        34788999999998654333333

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.25  E-value=3e-11  Score=106.36  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=84.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccc-cceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYR-ATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~-~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      +||+++|+.|||||+|+.+|....|...+. .+++                            +..+...+++.++++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~   52 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ   52 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence            589999999999999999998877765444 4444                            22233446788999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      ||+.++..+++.+  |...+...    ...++|+++++||.|+..+. .+..+++.         .|+++|++++.|+.
T Consensus        53 v~~~~~~~s~~~~--~~~~i~~~----~k~dl~~~~~~nk~dl~~~~-~~~~~~~~---------~~~~~s~~~~~~~~  115 (124)
T smart00010       53 CWRVDDRDSADNK--NVPEVLVG----NKSDLPILVGGNRDVLEEER-QVATEEGL---------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEEccCHHHHHHH--hHHHHHhc----CCCCCcEEEEeechhhHhhC-cCCHHHHH---------HHHHHhCCCcchhh
Confidence            9999999999877  88776632    23568999999999985543 33333222         35677889999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK00007 elongation factor G; Reviewed

Probab=99.24  E-value=6.3e-11  Score=137.06  Aligned_cols=143  Identities=19%  Similarity=0.245  Sum_probs=101.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh--CCC----------------CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH--QFF----------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg--~~f----------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      +...+|+|+|+.++|||||+++|+.  +..                ..+..+.++++.....+.+.+   ..++++||||
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~---~~~~liDTPG   84 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD---HRINIIDTPG   84 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC---eEEEEEeCCC
Confidence            4567999999999999999999973  110                112345566666666666654   4799999999


Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK  597 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak  597 (663)
                      +.+|.......++.+|++|+|+|+......+...-|.....        .++|+||+.||+|+....   ......++..
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--------~~~p~iv~vNK~D~~~~~---~~~~~~~i~~  153 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--------YKVPRIAFVNKMDRTGAD---FYRVVEQIKD  153 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCCCCCC---HHHHHHHHHH
Confidence            99988778888999999999999988766666555543222        358999999999987644   2233334434


Q ss_pred             HcCC---CeEEEEeCCCC
Q psy4094         598 EHNF---SGWFETSAKDN  612 (663)
Q Consensus       598 ~~g~---i~ffEtSAKtG  612 (663)
                      .++.   ...+++|+..+
T Consensus       154 ~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        154 RLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HhCCCeeeEEecCccCCc
Confidence            4433   33556666655

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.22  E-value=2.1e-10  Score=125.21  Aligned_cols=84  Identities=19%  Similarity=0.290  Sum_probs=59.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCC-cc-----ccceeeeceeEEE---------------ecCCceeEEEEEEeCCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSP-HY-----RATIGVDFALKVL---------------SWDHETIIRLQLWDIAG  517 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fse-e~-----~~TigiDf~~ktV---------------~vdge~~vkLqIwDTpG  517 (663)
                      ++|+|||.++||||||+++|.+..+.. +|     .+++|+.+....+               ..++...+.++|||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876643 22     3444443321110               12223247799999999


Q ss_pred             c----cchhhhHHHH---HhcCcEEEEEEeCC
Q psy4094         518 Q----ERFGNMTRVY---YKEAVGAFIVFDVT  542 (663)
Q Consensus       518 Q----Erfrsl~~~~---~r~ADgaILVyDVT  542 (663)
                      .    .....+...|   +++||++|+|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    4455666666   88999999999997

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.22  E-value=1.1e-10  Score=132.92  Aligned_cols=154  Identities=16%  Similarity=0.167  Sum_probs=117.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch------hhhHHHHH--h
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF------GNMTRVYY--K  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf------rsl~~~~~--r  530 (663)
                      .+|+++|.++||||||+|++.+....-...++++++-..-.+...+.   .++|.|.||-=..      ......|+  .
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~---~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH---EIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc---eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            57999999999999999999998888888999999998888888876   5899999993211      22344444  3


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      ..|++|-|+|.+|-+.--.+  . -++.+       -++|+|++.|.+|....+  -..-+..++.+..|+ +.++++|+
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl--t-lQLlE-------~g~p~ilaLNm~D~A~~~--Gi~ID~~~L~~~LGv-PVv~tvA~  147 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL--T-LQLLE-------LGIPMILALNMIDEAKKR--GIRIDIEKLSKLLGV-PVVPTVAK  147 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH--H-HHHHH-------cCCCeEEEeccHhhHHhc--CCcccHHHHHHHhCC-CEEEEEee
Confidence            57999999999985532222  2 22322       358999999999987654  122344567778885 89999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q psy4094         611 DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile  628 (663)
                      .|.|++++...+++....
T Consensus       148 ~g~G~~~l~~~i~~~~~~  165 (653)
T COG0370         148 RGEGLEELKRAIIELAES  165 (653)
T ss_pred             cCCCHHHHHHHHHHhccc
Confidence            999999999988764433

>KOG1489|consensus

Probab=99.22  E-value=1.6e-10  Score=122.06  Aligned_cols=158  Identities=15%  Similarity=0.185  Sum_probs=114.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHH---Hhc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVY---YKE  531 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~---~r~  531 (663)
                      ..|.|||-+++|||||++.+...+-.....+..++.-..-++.+++.  ..|.+=|+||..+    -+.+-..|   +..
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf--~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF--SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc--ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            47889999999999999999875544333333332222225555554  3489999999432    23344444   456


Q ss_pred             CcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         532 AVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       532 ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      |+..+||+|++..   .-++.+..++.+|..|  .....+.|.++|+||+|+.+..    ...+.+++.......+|++|
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y--ek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~lq~~~V~pvs  348 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELY--EKGLADRPALIVANKIDLPEAE----KNLLSSLAKRLQNPHVVPVS  348 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHH--hhhhccCceEEEEeccCchhHH----HHHHHHHHHHcCCCcEEEee
Confidence            9999999999988   7888888888888876  3345678999999999996422    23356777777654689999


Q ss_pred             CCCCcCHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQ  624 (663)
Q Consensus       609 AKtGeNVeELFe~IIr  624 (663)
                      |+.++|+.+++..|-+
T Consensus       349 A~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLRE  364 (366)
T ss_pred             eccccchHHHHHHHhh
Confidence            9999999999988754

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.21  E-value=2.4e-10  Score=101.83  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccch---------hhhHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF---------GNMTRVYY  529 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf---------rsl~~~~~  529 (663)
                      +|+|+|..|+|||||++.|++.... ....+..+.......+.+++.   .+.|+||||-..-         .......+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~---~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK---KFILVDTPGINDGESQDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE---EEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee---eEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence            6999999999999999999985432 222223332333344455553   5689999995321         11122334


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      ..+|++|+|+|..+... +....++..|+        .+.|+|+|.||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence            78999999999877321 22233333332        35899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd00066 G-alpha G protein alpha subunit

Probab=99.19  E-value=3e-10  Score=120.17  Aligned_cols=123  Identities=17%  Similarity=0.149  Sum_probs=87.7

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT-------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S-------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      +.+.+||++||...+..|.+||.+++++|+|+|+++-+.       ...+..-+..+...+......++|+||++||.|+
T Consensus       161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~  240 (317)
T cd00066         161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL  240 (317)
T ss_pred             eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence            679999999999999999999999999999999997421       2344444555555555555578999999999996


Q ss_pred             CCCC--------------C-CCCHHHHHHHHHH-----c----CCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         581 PKEG--------------I-ANNPAKIDEFIKE-----H----NFSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       581 ~der--------------~-~Vs~eei~qlak~-----~----g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ..+.              . ....+.+..+...     .    ..+....++|..-.+|..+|+.+.+.|+.+.
T Consensus       241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            3321              0 1233444443332     1    1133456889989999999999998887653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.19  E-value=4.3e-10  Score=112.52  Aligned_cols=155  Identities=19%  Similarity=0.298  Sum_probs=105.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMTRV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~~~  527 (663)
                      ..-|+++|.++||||||||.+++..-..-...|.|..-....+.++++    +.+.|.||          ++.|..+...
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~----~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE----LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc----EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            357999999999999999999997644444455554455555666654    78999999          5677778888


Q ss_pred             HHhc---CcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-
Q psy4094         528 YYKE---AVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-  601 (663)
Q Consensus       528 ~~r~---ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-  601 (663)
                      |+..   -.++++++|+...-.-.+  +.+|+.+          .++|++||+||+|.....  .....+...+....+ 
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~----------~~i~~~vv~tK~DKi~~~--~~~k~l~~v~~~l~~~  167 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE----------LGIPVIVVLTKADKLKKS--ERNKQLNKVAEELKKP  167 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH----------cCCCeEEEEEccccCChh--HHHHHHHHHHHHhcCC
Confidence            8865   357778888876544322  2233322          459999999999975532  111222333332221 


Q ss_pred             --Ce--EEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         602 --SG--WFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       602 --i~--ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                        ..  ++..|+..+.|++++...|.+.+..
T Consensus       168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence              12  7888999999999999988887654

>KOG0077|consensus

Probab=99.18  E-value=5e-11  Score=116.20  Aligned_cols=155  Identities=18%  Similarity=0.179  Sum_probs=112.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      -|++++|-.++|||||++.+.++... .+.||..-..  -.+.+.   .++++.+|.+||...+..|..|+..+|++++.
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTS--E~l~Ig---~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELSIG---GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCCh--HHheec---CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            49999999999999999988876543 2233322111  112222   36899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHcCC-------------C
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI---KEHNF-------------S  602 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla---k~~g~-------------i  602 (663)
                      ||+-|.+.|.....-++.+..   .....++|+++.+||+|.+..-   ..++.+...   +..+.             .
T Consensus        95 vda~d~er~~es~~eld~ll~---~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~  168 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLS---DESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPL  168 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHh---HHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence            999999999888766655553   2334679999999999998754   344333322   22111             3


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      ..|.||...+.+--+.|.|+.+.
T Consensus       169 evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  169 EVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEEEEccCccceeeeehhhh
Confidence            47889988888888888887653

>COG2262 HflX GTPases [General function prediction only]

Probab=99.18  E-value=4.9e-10  Score=121.70  Aligned_cols=162  Identities=16%  Similarity=0.124  Sum_probs=118.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch--hhhHHHH------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF--GNMTRVY------  528 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf--rsl~~~~------  528 (663)
                      ....|.++|=.++|||||+|++.+..........-+.|-..+.+.+.++  ..+.+-||-|--+.  ..+...|      
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g--~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG--RKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC--ceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            3468999999999999999999976665555566667788888888864  46889999995331  2233322      


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ...||++|+|+|++++...+.+......|.+    .+..++|+|+|.||+|+....     . ....+....- ..+.+|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e----l~~~~~p~i~v~NKiD~~~~~-----~-~~~~~~~~~~-~~v~iS  337 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAE----IGADEIPIILVLNKIDLLEDE-----E-ILAELERGSP-NPVFIS  337 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHH----cCCCCCCEEEEEecccccCch-----h-hhhhhhhcCC-CeEEEE
Confidence            3569999999999999766666655555553    244569999999999976533     1 1222222221 489999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      |++|+|++.|++.|...+.....
T Consensus       338 A~~~~gl~~L~~~i~~~l~~~~~  360 (411)
T COG2262         338 AKTGEGLDLLRERIIELLSGLRT  360 (411)
T ss_pred             eccCcCHHHHHHHHHHHhhhccc
Confidence            99999999999999998875543

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.16  E-value=3e-10  Score=132.26  Aligned_cols=120  Identities=20%  Similarity=0.217  Sum_probs=85.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEec--CCceeEEEEEEeCC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSW--DHETIIRLQLWDIA  516 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~v--dge~~vkLqIwDTp  516 (663)
                      .+...+|+|+|+.++|||||+.+++...-                ..+..+.++++.....+.+  ++. .+.+.|+|||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~i~liDtP   95 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGK-EYLINLIDTP   95 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCC-cEEEEEEcCC
Confidence            34567999999999999999999974211                1112223333333333332  333 4789999999


Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      |+.+|.......++.+|++|+|+|+......+....|...+.        .++|+|++.||+|+...
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--------~~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--------ERVKPVLFINKVDRLIK  154 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--------cCCCeEEEEECchhhcc
Confidence            999998888999999999999999988765555555544333        24688999999997643

>KOG0458|consensus

Probab=99.14  E-value=2.7e-10  Score=127.55  Aligned_cols=155  Identities=15%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHh-------------------------------CCCCCccccceeeeceeEEEec
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVH-------------------------------QFFSPHYRATIGVDFALKVLSW  502 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg-------------------------------~~fsee~~~TigiDf~~ktV~v  502 (663)
                      .....+.++|+|+..+|||||+.+++-                               +.-.++..++++++.....+.-
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            344678999999999999999999861                               1123456677777777766663


Q ss_pred             CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHH-------HHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094         503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-------LKWKQDLDAKVTLPDGNPIPCVLLA  575 (663)
Q Consensus       503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L-------~~wieeL~~~~~~~~~~~IPIILVG  575 (663)
                      .   ...+.|.|.|||.+|...+..-...||++|||+|++- ..|+.-       ++....++    ..+  -..+||+.
T Consensus       253 ~---~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr----~Lg--i~qlivai  322 (603)
T KOG0458|consen  253 K---SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLR----SLG--ISQLIVAI  322 (603)
T ss_pred             C---ceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHH----HcC--cceEEEEe
Confidence            3   3579999999999999988888899999999999985 344432       22222222    222  24579999


Q ss_pred             eCCCCCC---CCCCCCHHHHHHHH-HHcCC----CeEEEEeCCCCcCHHHH
Q psy4094         576 NKCDQPK---EGIANNPAKIDEFI-KEHNF----SGWFETSAKDNINIDDA  618 (663)
Q Consensus       576 NKsDL~d---er~~Vs~eei~qla-k~~g~----i~ffEtSAKtGeNVeEL  618 (663)
                      ||.|+..   +|++.....+..|+ +..|+    +.|++||+..|+|+-..
T Consensus       323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            9999865   55566666777777 45554    47999999999997654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.12  E-value=6.7e-10  Score=132.99  Aligned_cols=149  Identities=17%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCcee---------------EEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         469 AGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI---------------IRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       469 VGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~---------------vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ++||||+..+-+........-+++..+....+.++....               -.+.|||||||+.|..++...+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            359999999988777666666666666666655542100               12899999999999998888899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC-C--------------CHHHHH----H
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA-N--------------NPAKID----E  594 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~-V--------------s~eei~----q  594 (663)
                      ++|+|||+++.-.-+... .+..+..       .++|+|||+||+|+...... .              ..++..    .
T Consensus       552 ivlLVVDa~~Gi~~qT~e-~I~~lk~-------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIE-AINILRQ-------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHH-HHHHHHH-------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999743222221 1222221       35899999999998642200 0              001110    0


Q ss_pred             H---HHHc--------------CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         595 F---IKEH--------------NFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       595 l---ak~~--------------g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +   +..+              +.++++++||++|+||++|+.+|+..
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence            1   1222              33579999999999999999887654

>smart00275 G_alpha G protein alpha subunit

Probab=99.11  E-value=1.7e-09  Score=115.85  Aligned_cols=123  Identities=15%  Similarity=0.127  Sum_probs=86.9

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      +.+.+||++||..++..|..||.+++++|+|+|+++-+       ....+..-+..+...+......++|+||++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            56899999999999999999999999999999999732       12344444555555555555678999999999997


Q ss_pred             CCCC--------------CCCCHHHHHHHHHH-----cC-----CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         581 PKEG--------------IANNPAKIDEFIKE-----HN-----FSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       581 ~der--------------~~Vs~eei~qlak~-----~g-----~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ..+.              .....+.+..+...     ..     .+..+.++|..-.++..+|+.+...|+...
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            4311              01123333333322     11     134567889889999999999888887654

Subunit of G proteins that contains the guanine nucleotide binding site

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.10  E-value=2.8e-09  Score=113.31  Aligned_cols=160  Identities=17%  Similarity=0.175  Sum_probs=108.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-----hhh---hHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-----FGN---MTRVY  528 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-----frs---l~~~~  528 (663)
                      ....|+|.|.++||||||++.+.+........+..+-....-.+..++   ..+|++||||--+     ...   .....
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~---~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY---LRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC---ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            346899999999999999999998766544444433222222333332   5899999999421     111   11111


Q ss_pred             H-hcCcEEEEEEeCCC--cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094         529 Y-KEAVGAFIVFDVTR--AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       529 ~-r~ADgaILVyDVTd--~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff  605 (663)
                      + +-++++||+||.+.  ..+.+.-..++.+++..      ...|+|+|.||+|+.+..   ..+++......-+....+
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~------f~~p~v~V~nK~D~~~~e---~~~~~~~~~~~~~~~~~~  314 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL------FKAPIVVVINKIDIADEE---KLEEIEASVLEEGGEEPL  314 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh------cCCCeEEEEecccccchh---HHHHHHHHHHhhcccccc
Confidence            2 23688899999985  55677766777778754      338999999999987533   345555556666655678


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      .+++..+.+++.+-+.+...+.+
T Consensus       315 ~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         315 KISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ceeeeehhhHHHHHHHHHHHhhc
Confidence            88999998988877777766443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.08  E-value=2.6e-10  Score=116.56  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK  597 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak  597 (663)
                      ++|..+.+.+++++|++|+|||++++. +|+.+..|+..+..       .++|+|||+||+||...+ .+..+.+..+ .
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~~-~~~~~~~~~~-~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDDE-DMEKEQLDIY-R   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCCH-HHHHHHHHHH-H
Confidence            678888889999999999999999987 89999999986652       469999999999997544 3333444444 3


Q ss_pred             HcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094         598 EHNFSGWFETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       598 ~~g~i~ffEtSAKtGeNVeELFe~IIr  624 (663)
                      ..++ .+|++||++|.|++++|+.+..
T Consensus        95 ~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 NIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            4664 7999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.08  E-value=1.4e-09  Score=115.93  Aligned_cols=168  Identities=15%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHH---Hh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVY---YK  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~---~r  530 (663)
                      ..-|.|||-+++|||||++.+...+-.....+..++.-..=+|.+++.  -.|.+=|+||--+    -..+-..|   +.
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~--~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG--ESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC--CcEEEecCcccccccccCCCccHHHHHHHH
Confidence            346889999999999999999865443332232222222223333332  3589999999432    12333444   45


Q ss_pred             cCcEEEEEEeCCCccc---HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         531 EAVGAFIVFDVTRAAT---FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       531 ~ADgaILVyDVTd~~S---Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      .|.++++|+|++..+-   .+....+..+|..|  .....+.|.|||+||+|+.... +........+.+..+...++++
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~I  313 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLI  313 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceee
Confidence            6899999999996543   66777777777776  2344678999999999965533 2233334444445554434449


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         608 SAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ||.+++|++++...+.+.+....
T Consensus       314 Sa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         314 SALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             ehhcccCHHHHHHHHHHHHHHhh
Confidence            99999999999999998887765

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.07  E-value=9.9e-10  Score=129.81  Aligned_cols=120  Identities=20%  Similarity=0.228  Sum_probs=87.9

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEecC-------------C
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSWD-------------H  504 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~vd-------------g  504 (663)
                      +.+...+|+|+|+.++|||||+.+|+...-                ..+..+.+++......+.+.             .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            455678999999999999999999984221                12223334433333333332             1


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ...+.++|+|||||.+|.......++.+|++|+|+|+.++-..+....|...+.        .++|+||+.||+|+.
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--------~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--------ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--------CCCCEEEEEECCccc
Confidence            114678999999999999888999999999999999998877666655654433        458999999999986

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.05  E-value=6.8e-10  Score=118.77  Aligned_cols=151  Identities=17%  Similarity=0.181  Sum_probs=110.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC---------------------------------CCCccccceeeeceeEEEec
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF---------------------------------FSPHYRATIGVDFALKVLSW  502 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~---------------------------------fsee~~~TigiDf~~ktV~v  502 (663)
                      ...++++-+|...-||||||.||+.+.                                 +..+...+|++|...+.+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            345899999999999999999997211                                 12355678888888887776


Q ss_pred             CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.   -+|.|-|||||+.|...+..-..-||++|+++|+-.+-.-+.-+ .++..|.-        -..+||+.||+||.
T Consensus        84 ~K---RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG--------IrhvvvAVNKmDLv  152 (431)
T COG2895          84 EK---RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG--------IRHVVVAVNKMDLV  152 (431)
T ss_pred             cc---ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC--------CcEEEEEEeeeccc
Confidence            54   47999999999999888888888899999999995432222111 22333321        14678999999998


Q ss_pred             CCC---CCCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Q psy4094         582 KEG---IANNPAKIDEFIKEHNF--SGWFETSAKDNINIDD  617 (663)
Q Consensus       582 der---~~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeE  617 (663)
                      +..   +..+..+-..|+..++.  ..|+++||..|.||-.
T Consensus       153 dy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         153 DYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            744   33344555677777775  4699999999999753

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.03  E-value=5.4e-09  Score=101.96  Aligned_cols=162  Identities=12%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcc--ccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHH---
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHY--RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTR---  526 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~--~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~---  526 (663)
                      ++|+|+|.+|||||||+|.+++.......  ....+.+.......+.+   ..+.++||||-.+..       ....   
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~---~~i~viDTPG~~d~~~~~~~~~~~i~~~~   77 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG---RRVNVIDTPGLFDTSVSPEQLSKEIVRCL   77 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC---eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence            47999999999999999999987543222  22333344444444444   478999999954321       1111   


Q ss_pred             -HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----CCCCHHHHHHHHHHcC
Q psy4094         527 -VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----IANNPAKIDEFIKEHN  600 (663)
Q Consensus       527 -~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----~~Vs~eei~qlak~~g  600 (663)
                       ....+.|++|+|+++.+ .+-.. ...++.+...+..  ..-.++|+|.|+.|.....     ........+.+....+
T Consensus        78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~  153 (196)
T cd01852          78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG  153 (196)
T ss_pred             HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence             12356899999999986 22221 2223333332210  1114788999999854321     0011244556666655


Q ss_pred             CCeEEEEe-----CCCCcCHHHHHHHHHHHHHh
Q psy4094         601 FSGWFETS-----AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       601 ~i~ffEtS-----AKtGeNVeELFe~IIr~Ile  628 (663)
                      . .|+..+     +..+.++.+|++.|.+.+.+
T Consensus       154 ~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         154 G-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             C-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            3 454444     45577899999988887765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.03  E-value=3.7e-09  Score=112.28  Aligned_cols=162  Identities=17%  Similarity=0.173  Sum_probs=109.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----h---hhHHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----G---NMTRVYY  529 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----r---sl~~~~~  529 (663)
                      ....|+|||.+.||||||++.+.+-.......+..+.....-.+.++|   +.+||.|+||--.-    +   ...-...
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g---a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG---AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC---ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            346899999999999999999988655544445444455555566665   58999999984321    1   2234467


Q ss_pred             hcCcEEEEEEeCCCccc-HHHHHHHHHHHH-------------------------------------hhc---CCC----
Q psy4094         530 KEAVGAFIVFDVTRAAT-FDAVLKWKQDLD-------------------------------------AKV---TLP----  564 (663)
Q Consensus       530 r~ADgaILVyDVTd~~S-Fe~L~~wieeL~-------------------------------------~~~---~~~----  564 (663)
                      ++||++|+|+|+..... .+.+..-+...-                                     ..+   ..+    
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999996554 322222111110                                     000   000    


Q ss_pred             -----------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         565 -----------------DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       565 -----------------~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                                       +..-+|.|+|.||+|+..      .++...+.+..   .++.+||..+.|+++|.+.|.+.+-
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence                             111579999999999754      34555555555   5799999999999999999988764


Q ss_pred             hhh
Q psy4094         628 END  630 (663)
Q Consensus       628 e~~  630 (663)
                      --+
T Consensus       290 liR  292 (365)
T COG1163         290 LIR  292 (365)
T ss_pred             eEE
Confidence            433

>PTZ00416 elongation factor 2; Provisional

Probab=99.01  E-value=2.8e-09  Score=125.91  Aligned_cols=119  Identities=20%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEecCC-------ceeEEEE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSWDH-------ETIIRLQ  511 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~vdg-------e~~vkLq  511 (663)
                      .+...+|+|+|+.++|||||+++|+...-                ..+..+.++++.....+.+..       .....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            34567999999999999999999985211                122333444443333333331       1136799


Q ss_pred             EEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       512 IwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      |+||||+.+|.......++.+|++|+|+|+.++-..+...-|.....        .++|+|+|.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--------~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--------ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--------cCCCEEEEEEChhhh
Confidence            99999999998888899999999999999998766555444433222        358999999999986

>PRK13768 GTPase; Provisional

Probab=99.01  E-value=3.1e-09  Score=109.09  Aligned_cols=112  Identities=18%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             EEEEEeCCCccc---hhhhHHHHHhc-----CcEEEEEEeCCCcccHHHHH--HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         509 RLQLWDIAGQER---FGNMTRVYYKE-----AVGAFIVFDVTRAATFDAVL--KWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       509 kLqIwDTpGQEr---frsl~~~~~r~-----ADgaILVyDVTd~~SFe~L~--~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                      .+.|||++|+.+   ++..+..+++.     ++++|+|+|+..........  .|+......     ..++|+|+|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhH
Confidence            589999999865   34555555544     88999999997654333321  222221111     1358999999999


Q ss_pred             CCCCCCCCCCHHHHHH----------------------------HHHHcCC-CeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         579 DQPKEGIANNPAKIDE----------------------------FIKEHNF-SGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       579 DL~der~~Vs~eei~q----------------------------lak~~g~-i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      |+....   ..+....                            .....+. ..++++||+++.|+++++++|.+.+..
T Consensus       173 D~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        173 DLLSEE---ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhcCch---hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            986543   1111111                            1223332 378999999999999999999887743

>TIGR00101 ureG urease accessory protein UreG

Probab=99.00  E-value=6.2e-09  Score=103.45  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN  587 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V  587 (663)
                      ..+.++++.|..--..... .  -+|.+|+|||+++..+...  .+..++.          ..=++|+||+|+.+.. ..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~----------~ad~~~~~k~d~~~~~-~~  155 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT----------RSDLLVINKIDLAPMV-GA  155 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh----------hccEEEEEhhhccccc-cc
Confidence            3456777777322222221 1  2688999999997665322  1222222          1228999999997532 12


Q ss_pred             CHHHHHHHHHH-cCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         588 NPAKIDEFIKE-HNFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       588 s~eei~qlak~-~g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ..+.+.+.++. ....++|+|||++|+|++++|++|.+.++
T Consensus       156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34444444444 33468999999999999999999997664

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09866 hypothetical protein; Provisional

Probab=98.98  E-value=1.1e-08  Score=116.88  Aligned_cols=109  Identities=20%  Similarity=0.288  Sum_probs=75.1

Q ss_pred             EEEEEeCCCccc-----hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         509 RLQLWDIAGQER-----FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       509 kLqIwDTpGQEr-----frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      .+.|+||||-..     ....+...+..+|++|||+|.+...+.... ..++.+...     ....|+|+|+||+|+.+.
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-----~K~~PVILVVNKIDl~dr  304 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-----GQSVPLYVLVNKFDQQDR  304 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-----CCCCCEEEEEEcccCCCc
Confidence            478999999643     233455678999999999999876554442 233444421     123699999999998543


Q ss_pred             CCCCCHHHHHHHHHHc------CCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094         584 GIANNPAKIDEFIKEH------NFSGWFETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       584 r~~Vs~eei~qlak~~------g~i~ffEtSAKtGeNVeELFe~IIr  624 (663)
                      . ....+.+..+....      ....+|++||+.|.|++++++.|..
T Consensus       305 e-eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        305 N-SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             c-cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            2 23345555554321      2346999999999999999999887

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.97  E-value=5.5e-09  Score=109.03  Aligned_cols=167  Identities=16%  Similarity=0.211  Sum_probs=111.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEE-ecCCceeEEEEEEeCCCccc-------hhhhHHH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL-SWDHETIIRLQLWDIAGQER-------FGNMTRV  527 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV-~vdge~~vkLqIwDTpGQEr-------frsl~~~  527 (663)
                      ...++|+++|..|+|||||||.++.+...+...-.+|.+...+.+ .++++   .+.|||+||-++       |+.+...
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~---~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE---NLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc---ceEEecCCCcccchhhhHHHHHHHHH
Confidence            345899999999999999999999765544433333333322222 22333   589999999654       7788888


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CCC------------CCHHHHH
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE--GIA------------NNPAKID  593 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de--r~~------------Vs~eei~  593 (663)
                      ++...|.++++.++.|+.---....|+..+..      ..+.++|++.|.+|...-  .|.            ...+.+.
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~------~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~  187 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIIL------GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE  187 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHHHHHHHHh------ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence            99999999999999987643333444443332      234889999999996432  110            1111122


Q ss_pred             HHHHHcC-CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         594 EFIKEHN-FSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       594 qlak~~g-~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      .+.+... -.+++..++..++|++++...+++.+.....
T Consensus       188 ~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         188 ALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence            2222111 2367888889999999999999998875554

>KOG0090|consensus

Probab=98.96  E-value=5.9e-09  Score=105.40  Aligned_cols=155  Identities=20%  Similarity=0.226  Sum_probs=101.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh---cCcEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK---EAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r---~ADgaI  536 (663)
                      .|+++|..++|||+|+.++..+.+...+...   +-..-++.+...   .+.++|.|||.+.+.....++.   .+-++|
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~---~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSE---NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCc---ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            6999999999999999999987443332221   112223333333   3789999999999887777776   799999


Q ss_pred             EEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH--------------------
Q psy4094         537 IVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF--------------------  595 (663)
Q Consensus       537 LVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql--------------------  595 (663)
                      ||+|..- ..-...+.+++=.+...+.. ....+|+++++||.|+.-.+   ..+.+++.                    
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAk---t~~~Ir~~LEkEi~~lr~sRsa~~~~~~  189 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAK---TAEKIRQQLEKEIHKLRESRSALRSISD  189 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcC---cHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            9998763 23344444443333322211 34568999999999986544   11111111                    


Q ss_pred             ------------------HHHc-CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         596 ------------------IKEH-NFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       596 ------------------ak~~-g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                                        .... ..+.|.++|++.+ +++++-+||.+.
T Consensus       190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                              1111 1145889999998 999999998764

>KOG1191|consensus

Probab=98.96  E-value=5.4e-09  Score=115.61  Aligned_cols=170  Identities=14%  Similarity=0.064  Sum_probs=114.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh---------hhHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG---------NMTRV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr---------sl~~~  527 (663)
                      -++|+|+|.++||||||+|.|...... ....++.+-|.....++++|   +.+.+.||+|-.+-.         .....
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G---~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG---VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC---eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            379999999999999999999986554 35566777777777888887   478999999964411         12344


Q ss_pred             HHhcCcEEEEEEeCC--CcccHHHHHHHHHHHHhhcC--CCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--cCC
Q psy4094         528 YYKEAVGAFIVFDVT--RAATFDAVLKWKQDLDAKVT--LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE--HNF  601 (663)
Q Consensus       528 ~~r~ADgaILVyDVT--d~~SFe~L~~wieeL~~~~~--~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~--~g~  601 (663)
                      .+..+|++++|+|+.  +-.+-..+...++.....+.  .+.....++|++.||+|+...-..+... ...+...  ++-
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~  423 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSV  423 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcc
Confidence            567899999999994  33443444455554443332  1233447899999999987642111111 1111111  111


Q ss_pred             -CeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         602 -SGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       602 -i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                       ....++|++++++++.|...+...+.....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence             235679999999999999999887765443

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.95  E-value=4.6e-09  Score=98.78  Aligned_cols=137  Identities=20%  Similarity=0.275  Sum_probs=99.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----cchhhhHHHHHhcCcEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----ERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----Erfrsl~~~~~r~ADga  535 (663)
                      ||++||..|+|||||++.+.++..  .|..|..++|       .+.     ..+||+|.    .++..-.......+|++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~-----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi   68 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK-----GDIDTPGEYFEHPRWYHALITTLQDADVI   68 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc-----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence            799999999999999999987532  3444444333       221     25788883    23322233445789999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      ++|-.++++++--..     .|.      .....|+|=|.+|.||.+..   ..+..++|+.+.|.-++|++|+.++.+|
T Consensus        69 ~~v~~and~~s~f~p-----~f~------~~~~k~vIgvVTK~DLaed~---dI~~~~~~L~eaGa~~IF~~s~~d~~gv  134 (148)
T COG4917          69 IYVHAANDPESRFPP-----GFL------DIGVKKVIGVVTKADLAEDA---DISLVKRWLREAGAEPIFETSAVDNQGV  134 (148)
T ss_pred             eeeecccCccccCCc-----ccc------cccccceEEEEecccccchH---hHHHHHHHHHHcCCcceEEEeccCcccH
Confidence            999999998752211     111      11235699999999998633   5678889999999889999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         616 DDAAKTLVQ  624 (663)
Q Consensus       616 eELFe~IIr  624 (663)
                      ++++..+..
T Consensus       135 ~~l~~~L~~  143 (148)
T COG4917         135 EELVDYLAS  143 (148)
T ss_pred             HHHHHHHHh
Confidence            999998864

>KOG1707|consensus

Probab=98.93  E-value=9.7e-09  Score=115.32  Aligned_cols=164  Identities=16%  Similarity=0.214  Sum_probs=127.6

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..|.+.|+|..++|||.|++.|++..+...+..+....|....+.+.++ .-.+.+-|++-. ....+...- ..||
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~-~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQ-QKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccc-cceEEEeecCcc-ccccccCcc-ceee
Confidence            3456799999999999999999999999998888888888888888888876 456888888754 222222222 6799


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      +++++||.+++.+|..+...++....      ...+|+++|+.|+|+.+.......+. .+++..+++.+.+.+|.+..-
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~------~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFD------LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhh------ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCC
Confidence            99999999999999998766554432      26799999999999987553334444 789999998778888888533


Q ss_pred             CHHHHHHHHHHHHHh
Q psy4094         614 NIDDAAKTLVQKILE  628 (663)
Q Consensus       614 NVeELFe~IIr~Ile  628 (663)
                      . .++|..|+..+.-
T Consensus       571 s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  571 S-NELFIKLATMAQY  584 (625)
T ss_pred             C-chHHHHHHHhhhC
Confidence            3 8999998886644

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=7.9e-09  Score=119.80  Aligned_cols=132  Identities=21%  Similarity=0.276  Sum_probs=105.8

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC--------------CC----CCccccceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ--------------FF----SPHYRATIGVDFALKVLSWDHETIIRLQLWDIA  516 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~--------------~f----see~~~TigiDf~~ktV~vdge~~vkLqIwDTp  516 (663)
                      .....+|.|+|+.++|||||..+++-.              .+    ..+..+.+++.....++.+.+  .+.++|+|||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~--~~~iNlIDTP   84 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG--DYRINLIDTP   84 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC--ceEEEEeCCC
Confidence            345679999999999999999999721              01    134556778888888888876  3689999999


Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI  596 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla  596 (663)
                      ||.+|.....+.++-+|++|+|+|+...-..+.-..|....+        .++|.|++.||.|.....+....+++...+
T Consensus        85 GHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--------~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l  156 (697)
T COG0480          85 GHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--------YGVPRILFVNKMDRLGADFYLVVEQLKERL  156 (697)
T ss_pred             CccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--------cCCCeEEEEECccccccChhhhHHHHHHHh
Confidence            999999999999999999999999999888888888877665        469999999999987655445555554443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.88  E-value=1e-08  Score=101.46  Aligned_cols=56  Identities=16%  Similarity=0.064  Sum_probs=41.3

Q ss_pred             CcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEH-NFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       569 IPIILVGNKsDL~der~~Vs~eei~qlak~~-g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      .+.|+|+||+|+.... ........+.++.. ...+++++||++|+|++++|+++.++
T Consensus       149 ~a~iiv~NK~Dl~~~~-~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       149 EADLIVINKADLAEAV-GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hCCEEEEEHHHccccc-hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5779999999997533 12233444444443 33589999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0705|consensus

Probab=98.86  E-value=5.6e-09  Score=116.34  Aligned_cols=165  Identities=19%  Similarity=0.298  Sum_probs=130.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +|+.|||..++|||+|+++|+.+.|.....+.-| .| .+.+.+++. ...+.+.|.+|+..     ..|...+|++|||
T Consensus        31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv~gq-s~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVVDGQ-SHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             hheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEeecc-ceEeeeecccCCch-----hhhhhhccceEEE
Confidence            7999999999999999999999999876665554 44 344445554 56789999998543     3477889999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |.+.+..+|+.+..+...+..+.   ....+|+++|+++.-....+ +.+....+++++..+--+.||+++|.+|.|++.
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r---~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYR---NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEeccccCHHHHHHHHhhccccc---ccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            99999999999998887776543   35779999999986654322 255666777777766656899999999999999


Q ss_pred             HHHHHHHHHHhhhhhhh
Q psy4094         618 AAKTLVQKILENDKVQA  634 (663)
Q Consensus       618 LFe~IIr~Ile~~k~~~  634 (663)
                      .|..++..+...++.++
T Consensus       180 vf~~~~~k~i~~~~~qq  196 (749)
T KOG0705|consen  180 VFQEVAQKIVQLRKYQQ  196 (749)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999998887766544

>KOG0082|consensus

Probab=98.83  E-value=6.5e-08  Score=104.33  Aligned_cols=124  Identities=15%  Similarity=0.146  Sum_probs=92.7

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      ..+.++|++||...+.-|.++|.+++++|||+++++-+       .-.++.+-+..+..+|......+.+|||+.||.||
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            57999999999999999999999999999999998522       24456667778888888888889999999999998


Q ss_pred             CCCC--------------CCCCHHHHHHHHHH----cC-----CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         581 PKEG--------------IANNPAKIDEFIKE----HN-----FSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       581 ~der--------------~~Vs~eei~qlak~----~g-----~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      -.+.              ..-..+++..+...    ..     -+-+..+.|..-.||..+|..+.+.|....-
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            4322              11233444433322    11     1234566788889999999999998877543

>KOG1532|consensus

Probab=98.83  E-value=1.2e-08  Score=106.56  Aligned_cols=120  Identities=15%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             EEEEEEeCCCccc-hh-----hhHHHHHhcC--cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         508 IRLQLWDIAGQER-FG-----NMTRVYYKEA--VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQEr-fr-----sl~~~~~r~A--DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      ....|+|||||.+ |.     .+....+...  -++++|+|.-...+   -.-|+..+...|.......+|+|+|.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~---p~tFMSNMlYAcSilyktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS---PTTFMSNMLYACSILYKTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC---chhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence            5689999999853 32     2222333333  34445665543221   123444444455555567899999999999


Q ss_pred             CCCCCCC----CCHHHHHH--------------------HHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         580 QPKEGIA----NNPAKIDE--------------------FIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       580 L~der~~----Vs~eei~q--------------------lak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      +.+..+.    .+.+.-++                    +-..|..+..+-||+.+|.|++++|..|-..+-++.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            9775421    11111111                    111223356889999999999999999887765544

>cd01882 BMS1 Bms1

Probab=98.80  E-value=6.5e-08  Score=97.53  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +.|+|+|.+|+|||||++.+++...........|    ...+...+  ...+.++||+|+.  ..+ ...+..+|++|+|
T Consensus        40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g----~i~i~~~~--~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG----PITVVTGK--KRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCccccccc----cEEEEecC--CceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            6899999999999999999986422111111111    11121122  3578999999864  222 2346889999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCC--CCCCHHHHHH-HHH-HcCCCeEEEEeCCCCc
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKEG--IANNPAKIDE-FIK-EHNFSGWFETSAKDNI  613 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~der--~~Vs~eei~q-lak-~~g~i~ffEtSAKtGe  613 (663)
                      +|.+........ .++..+..       .++|. |+|.||+|+....  .....+.++. +.. .....+++.+||++..
T Consensus       111 iDa~~~~~~~~~-~i~~~l~~-------~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         111 IDASFGFEMETF-EFLNILQV-------HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EecCcCCCHHHH-HHHHHHHH-------cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            999865543332 23333331       34674 5699999986432  1111222323 222 2344689999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.79  E-value=5.9e-10  Score=113.89  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             EEEEEeCCCccchhhhHHHHH--------hcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         509 RLQLWDIAGQERFGNMTRVYY--------KEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~--------r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      .+.|+|||||.++-..|....        ...-++++++|...... ..-+..++..+...+    ..++|+|.|.||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~----~~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML----RLELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH----HHTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh----hCCCCEEEeeeccC
Confidence            689999999988765554443        34457788888874433 112222332222111    13599999999999


Q ss_pred             CCCCCC---------------------CCCHHHHHHHHHHcCCC-eEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         580 QPKEGI---------------------ANNPAKIDEFIKEHNFS-GWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       580 L~der~---------------------~Vs~eei~qlak~~g~i-~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      +.....                     ....+.+..+...++.. .|+.+|+.+++++++++..|-+.+
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            866110                     00111222233334555 899999999999999998886543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1144|consensus

Probab=98.78  E-value=2.8e-08  Score=113.63  Aligned_cols=158  Identities=20%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcccc----ceeeeceeEE----------------EecCCceeEEEEEEeCCCc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRA----TIGVDFALKV----------------LSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~----TigiDf~~kt----------------V~vdge~~vkLqIwDTpGQ  518 (663)
                      --+||+|+..+|||-|+..+-+........-    .||..|....                +.+.     -|.++||+||
T Consensus       476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP-----g~lvIdtpgh  550 (1064)
T KOG1144|consen  476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP-----GLLVIDTPGH  550 (1064)
T ss_pred             ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC-----eeEEecCCCc
Confidence            3689999999999999999887544433333    3343443221                2222     3789999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--------------  584 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--------------  584 (663)
                      +.|..++.+....||.+|||+|+..+---+.+.. +..|+       ..+.|+||+.||+|.....              
T Consensus       551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR-------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk  622 (1064)
T KOG1144|consen  551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLR-------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK  622 (1064)
T ss_pred             hhhhhhhhccccccceEEEEeehhccCCcchhHH-HHHHH-------hcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence            9999999999999999999999997544333322 23333       2458999999999953211              


Q ss_pred             --CCCC------H-HHHHHHHHHcC--------------CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         585 --IANN------P-AKIDEFIKEHN--------------FSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       585 --~~Vs------~-eei~qlak~~g--------------~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                        ..+.      . ..+.+|+. .|              ++.++++||..|+||-+|+-+|++..-.++
T Consensus       623 Q~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  623 QKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence              0000      0 11112222 11              134679999999999999999988654444

>PTZ00258 GTP-binding protein; Provisional

Probab=98.75  E-value=1.3e-07  Score=103.42  Aligned_cols=87  Identities=16%  Similarity=0.136  Sum_probs=58.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccc-
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQER-  520 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQEr-  520 (663)
                      ...++|+|||.++||||||++++.+........+..+++...-.+.+.+..              ...+.++|+||-.. 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            445799999999999999999998765544444555555444444443221              13589999999432 


Q ss_pred             ---hhhhHHH---HHhcCcEEEEEEeCC
Q psy4094         521 ---FGNMTRV---YYKEAVGAFIVFDVT  542 (663)
Q Consensus       521 ---frsl~~~---~~r~ADgaILVyDVT  542 (663)
                         -..+...   .+++||++|+|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence               1122223   357899999999984

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=2.4e-08  Score=106.09  Aligned_cols=169  Identities=18%  Similarity=0.186  Sum_probs=110.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeE--EEe------------c------CC---ceeEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALK--VLS------------W------DH---ETIIRL  510 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~k--tV~------------v------dg---e~~vkL  510 (663)
                      ..++|.++|+...|||||...+.+   +.+.++..+.+++....-  .+.            .      .+   +-.-++
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            458999999999999999999876   445555555554322111  100            0      00   112468


Q ss_pred             EEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCH
Q psy4094         511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNP  589 (663)
Q Consensus       511 qIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~  589 (663)
                      .|.|.|||+-....+-.-..-.|++|||++.+.+.---.-.+.+-.|. ++     .-..||+|-||+||... +-...+
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Ii-----gik~iiIvQNKIDlV~~E~AlE~y  162 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-II-----GIKNIIIVQNKIDLVSRERALENY  162 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hh-----ccceEEEEecccceecHHHHHHHH
Confidence            899999998655444333444699999999987532222222222222 11     11467999999999752 223456


Q ss_pred             HHHHHHHHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         590 AKIDEFIKEHNF--SGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       590 eei~qlak~~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      +++++|.+....  .+++++||..+.||+.|++.|...|..-..
T Consensus       163 ~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         163 EQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             HHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            777777765432  589999999999999999999998865443

>KOG0461|consensus

Probab=98.72  E-value=1.9e-07  Score=100.13  Aligned_cols=159  Identities=19%  Similarity=0.191  Sum_probs=104.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh-------CCCCCccccceeeeceeEEEecCC------ceeEEEEEEeCCCccchhhh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH-------QFFSPHYRATIGVDFALKVLSWDH------ETIIRLQLWDIAGQERFGNM  524 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg-------~~fsee~~~TigiDf~~ktV~vdg------e~~vkLqIwDTpGQErfrsl  524 (663)
                      .++|.|+|+..+|||||.+++..       +.......+.++.|.....+.+.-      ...+.+.++|+|||...   
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL---   83 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL---   83 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH---
Confidence            38999999999999999999863       333455667777777666655532      12467899999999654   


Q ss_pred             HHHHHhc---CcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCC-CHHHHHHHHHH
Q psy4094         525 TRVYYKE---AVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IAN-NPAKIDEFIKE  598 (663)
Q Consensus       525 ~~~~~r~---ADgaILVyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~der-~~V-s~eei~qlak~  598 (663)
                      .+..+..   .|..|+|+|+..+..-+.+.-++ -++.         -...|+|.||+|+..+. +.. ..+....+.+.
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---------c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---------ccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            3444444   57889999999877666655443 2222         14568888999865432 111 22222333332


Q ss_pred             c------CCCeEEEEeCCCC----cCHHHHHHHHHHHHHh
Q psy4094         599 H------NFSGWFETSAKDN----INIDDAAKTLVQKILE  628 (663)
Q Consensus       599 ~------g~i~ffEtSAKtG----eNVeELFe~IIr~Ile  628 (663)
                      +      |..+++++||+.|    +.|.||.+.|-.+|..
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            2      3368999999999    5666666666665544

>KOG1490|consensus

Probab=98.68  E-value=1.1e-07  Score=105.60  Aligned_cols=169  Identities=16%  Similarity=0.125  Sum_probs=109.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----hhhHHH--HH--
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----GNMTRV--YY--  529 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----rsl~~~--~~--  529 (663)
                      .-.++|+|-++||||||++............+..+-.++.-.+.+   ....++++||||.-+.    +....+  ..  
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy---kYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY---KYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh---heeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            358999999999999999887765444333333322222222221   1467899999994321    221111  11  


Q ss_pred             -hcCcEEEEEEeCCC--cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeEE
Q psy4094         530 -KEAVGAFIVFDVTR--AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       530 -r~ADgaILVyDVTd--~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~ff  605 (663)
                       +--.+++++.|++.  +.|...-..++..|+-.     ..+.|+|+|+||+|+..-. .....+++.+....-+.++++
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~  319 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV  319 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-----hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence             22347888999985  55666655666666643     3578999999999975432 111223444445555557899


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile~~k~~~  634 (663)
                      ++|+.+.+||-++-......++.++-.+.
T Consensus       320 ~tS~~~eegVm~Vrt~ACe~LLa~RVE~K  348 (620)
T KOG1490|consen  320 QTSCVQEEGVMDVRTTACEALLAARVEQK  348 (620)
T ss_pred             EecccchhceeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888776544

>KOG3886|consensus

Probab=98.66  E-value=1.9e-08  Score=102.90  Aligned_cols=149  Identities=21%  Similarity=0.262  Sum_probs=101.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-----hhHHHHHhcC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-----NMTRVYYKEA  532 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-----sl~~~~~r~A  532 (663)
                      -||+++|..|+|||+|-..+..+... .....+-++|+..-.+.+-|+  +.|.+||++||+.|.     ......+++.
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            49999999999999998766544322 345566677888888888885  679999999998553     2456678999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc---CCCeEEEEe
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH---NFSGWFETS  608 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~---g~i~ffEtS  608 (663)
                      +++|+|||+...+-...+..+-..|...+.  +.+...|.+...|.||.... +.+..++-.+.....   .++.+|.+|
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            999999999987665665555554444332  34667889999999986532 122222222222222   224677777


Q ss_pred             CCC
Q psy4094         609 AKD  611 (663)
Q Consensus       609 AKt  611 (663)
                      ...
T Consensus       161 iwD  163 (295)
T KOG3886|consen  161 IWD  163 (295)
T ss_pred             hhh
Confidence            653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.66  E-value=4.3e-07  Score=97.49  Aligned_cols=105  Identities=10%  Similarity=0.034  Sum_probs=66.6

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~  586 (663)
                      +.+.|+||+|...-.   ......||.+|+|.+...++.++.+.   ..+..         +.-|+|.||+|+.... ..
T Consensus       149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E---------~aDIiVVNKaDl~~~~~a~  213 (332)
T PRK09435        149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME---------LADLIVINKADGDNKTAAR  213 (332)
T ss_pred             CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh---------hhheEEeehhcccchhHHH
Confidence            578999999975222   12466799999997644444444332   21221         2238999999986532 01


Q ss_pred             CCHHHHHHHHHHc------CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         587 NNPAKIDEFIKEH------NFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       587 Vs~eei~qlak~~------g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ....++...+...      +..+++.+||+++.||++|++.|.+++.
T Consensus       214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            1122333333321      1147999999999999999999998754

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.65  E-value=5.1e-07  Score=96.24  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=70.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhH-------HH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMT-------RV  527 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~-------~~  527 (663)
                      ...++|+|+|..|||||||+|++++..... ......+.........+++   ..+.||||||..+.....       ..
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G---~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG---FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC---eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            456899999999999999999999865321 1111111111112222333   579999999976542221       11


Q ss_pred             HH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         528 YY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       528 ~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      |+  ...|++|||..++.......-...++.|...+..  ..-.++|||.++.|..
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFS  166 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccC
Confidence            12  1589999997665322111112334444433211  1124689999999965

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.64  E-value=3.9e-07  Score=93.95  Aligned_cols=120  Identities=15%  Similarity=0.123  Sum_probs=70.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-cccceeeeceeEEEecCCceeEEEEEEeCCCccchh--h--------h
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPH-YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--N--------M  524 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--s--------l  524 (663)
                      ...++|+|+|..|||||||+|.+++...... .....+.........+++   ..+.||||||-....  .        .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g---~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG---FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            3458999999999999999999998654322 111222233233333444   578999999965431  1        1


Q ss_pred             HHHHHh--cCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         525 TRVYYK--EAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       525 ~~~~~r--~ADgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ...|+.  ..|++++|..++.. ..+.. ...++.|...+..  .--..+|||.||+|..
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~--~i~~~~ivV~T~~d~~  162 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP--SIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh--hhHhCEEEEEeCCccC
Confidence            222333  46788888766543 22332 2333334432211  1114689999999975

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.8e-07  Score=98.77  Aligned_cols=145  Identities=16%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh----------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH----------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg----------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      ...++|..||+.+.|||||...+..                +...++..+.++++.....+...+   -++-..|+|||.
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~---rhyahVDcPGHa   86 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN---RHYAHVDCPGHA   86 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC---ceEEeccCCChH
Confidence            4568999999999999999877642                122345556676665555555444   478899999999


Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPKEG--IANNPAKIDEFI  596 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~der--~~Vs~eei~qla  596 (663)
                      +|-..+..-..+.|++|||++++|...-+.....+        ....-++ -||++.||+|+.++.  ......+++.++
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--------larqvGvp~ivvflnK~Dmvdd~ellelVemEvreLL  158 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--------LARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--------hhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence            99888888888999999999999976555433222        1122345 467889999998643  223345778899


Q ss_pred             HHcCC----CeEEEEeCCC
Q psy4094         597 KEHNF----SGWFETSAKD  611 (663)
Q Consensus       597 k~~g~----i~ffEtSAKt  611 (663)
                      ..|++    .+++.-||..
T Consensus       159 s~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         159 SEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHcCCCCCCcceeechhhh
Confidence            99886    3567667653

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.6e-07  Score=101.53  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=116.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      -|+..|+-..|||||+..+.+   +...+...+++++|.........+.   .+.|+|++||++|-..+-..+...|.+|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~---~~~fIDvpgh~~~i~~miag~~~~d~al   78 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG---VMGFIDVPGHPDFISNLLAGLGGIDYAL   78 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC---ceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence            578899999999999999876   3445667788888887777777654   6899999999999877777778899999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc--CCCeEEEEeCCCCcC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH--NFSGWFETSAKDNIN  614 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~--g~i~ffEtSAKtGeN  614 (663)
                      ||++.++.-..+....++ .|. .+   +  -...|+|.+|+|+.+..  ...+.+.++....  .+.++|.+|+++|.|
T Consensus        79 LvV~~deGl~~qtgEhL~-iLd-ll---g--i~~giivltk~D~~d~~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G  149 (447)
T COG3276          79 LVVAADEGLMAQTGEHLL-ILD-LL---G--IKNGIIVLTKADRVDEA--RIEQKIKQILADLSLANAKIFKTSAKTGRG  149 (447)
T ss_pred             EEEeCccCcchhhHHHHH-HHH-hc---C--CCceEEEEeccccccHH--HHHHHHHHHHhhcccccccccccccccCCC
Confidence            999998776655544332 222 11   1  13459999999987632  1233334444333  345789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4094         615 IDDAAKTLVQKIL  627 (663)
Q Consensus       615 VeELFe~IIr~Il  627 (663)
                      |++|-+.|....-
T Consensus       150 I~~Lk~~l~~L~~  162 (447)
T COG3276         150 IEELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998774

>KOG0468|consensus

Probab=98.57  E-value=2.6e-07  Score=105.13  Aligned_cols=120  Identities=21%  Similarity=0.314  Sum_probs=86.7

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-----------------cccceeeeceeEEEecC--CceeEEEEEE
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPH-----------------YRATIGVDFALKVLSWD--HETIIRLQLW  513 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-----------------~~~TigiDf~~ktV~vd--ge~~vkLqIw  513 (663)
                      .......+|.|+|+-++|||+|+..++......-                 ..+...+.....++.+.  ....+-++|+
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            3456678999999999999999999986543221                 11222222222333332  1225779999


Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      ||+||..|...+...++.+|++++|+|+.+.-++..-+-....+.        .++||++|+||+|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--------~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--------NRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--------ccCcEEEEEehhHH
Confidence            999999999999999999999999999999888766433322332        45899999999994

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.56  E-value=2.8e-07  Score=99.76  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      ..+.+||++||...+.-|.+++.+++++|||+++++-+       ....+.+-+..+...|......+.|+||+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            57899999999999999999999999999999987421       22445555666666666656678999999999996


Q ss_pred             CCC-----C----------CC--CCHHHHHHHHHHc-----------CCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         581 PKE-----G----------IA--NNPAKIDEFIKEH-----------NFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       581 ~de-----r----------~~--Vs~eei~qlak~~-----------g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      -.+     .          ..  ...+.+..+....           ..+.+..|+|.+..+|..+|+.|.+.|
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            211     0          01  2334455444331           112355788888889999999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.56  E-value=5.8e-07  Score=89.70  Aligned_cols=164  Identities=13%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcc--ccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHH--
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHY--RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTR--  526 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~--~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~--  526 (663)
                      ++|+|||..|+||||++|.+++.......  ....+.........+++   ..+.|+||||-.+..        .+..  
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g---~~v~VIDTPGl~d~~~~~~~~~~~i~~~l   77 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG---RQVTVIDTPGLFDSDGSDEEIIREIKRCL   77 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT---EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc---eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence            58999999999999999999987654332  22333344455556666   478999999943211        1111  


Q ss_pred             -HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-C-CC----HHHHHHHHHHc
Q psy4094         527 -VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-A-NN----PAKIDEFIKEH  599 (663)
Q Consensus       527 -~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~-Vs----~eei~qlak~~  599 (663)
                       ....+.+++|||+.+. +-+-... ..++.|...+...  .-..+|||.+..|...... . ..    ....+++....
T Consensus        78 ~~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c  153 (212)
T PF04548_consen   78 SLCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC  153 (212)
T ss_dssp             HHTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc
Confidence             1234689999999998 3332222 2222233222111  1134788888887544331 0 00    12345566666


Q ss_pred             CCCeEEEEeCC------CCcCHHHHHHHHHHHHHhhh
Q psy4094         600 NFSGWFETSAK------DNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       600 g~i~ffEtSAK------tGeNVeELFe~IIr~Ile~~  630 (663)
                      +. .|+..+.+      ....+.+||+.|-+.+.+..
T Consensus       154 ~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  154 GG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             TT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            64 67777666      23457777777766655543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01855 YqeH YqeH

Probab=98.54  E-value=3.3e-07  Score=88.92  Aligned_cols=95  Identities=16%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH----
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI----  596 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla----  596 (663)
                      |+.++..+++++|++|+|+|+++...     .|...+...     ..+.|+|+|+||+|+....  ...+.+..++    
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-----~~~~~~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~   91 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-----GGNNPVILVGNKIDLLPKD--KNLVRIKNWLRAKA   91 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-----cCCCcEEEEEEchhcCCCC--CCHHHHHHHHHHHH
Confidence            57888999999999999999987542     233333211     2458999999999986532  3334444443    


Q ss_pred             -HHcCC--CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         597 -KEHNF--SGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       597 -k~~g~--i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                       ...+.  ..+|.+||++|+|+++++++|.+.+.
T Consensus        92 ~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          92 AAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence             22232  35899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.53  E-value=1.6e-06  Score=91.05  Aligned_cols=102  Identities=18%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN  587 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V  587 (663)
                      +.+.|+||+|....   ....+..+|.++++-+.   .+-+.+..+...+.         .+|.++|+||+|+....   
T Consensus       127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~---  188 (300)
T TIGR00750       127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIP---GTGDDLQGIKAGLM---------EIADIYVVNKADGEGAT---  188 (300)
T ss_pred             CCEEEEeCCCCchh---hhHHHHhhceEEEEecC---CccHHHHHHHHHHh---------hhccEEEEEcccccchh---
Confidence            67899999985321   12346678888888543   33344444444333         36779999999987533   


Q ss_pred             CHHHH--------HHHHHH-cCC-CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         588 NPAKI--------DEFIKE-HNF-SGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       588 s~eei--------~qlak~-~g~-i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .....        ..+... .++ .+++.|||+++.|+++++++|.+++.
T Consensus       189 ~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       189 NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            11110        111111 122 35899999999999999999988743

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.48  E-value=1.6e-06  Score=81.26  Aligned_cols=63  Identities=25%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             EEEEEeCCCcc----chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         509 RLQLWDIAGQE----RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       509 kLqIwDTpGQE----rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                      .+.|+|+||-.    ....++..|+..+|++|+|.+.+....-.....|.+.+...       ...+|+|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            48999999953    33477888999999999999999876666666666655532       23389999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01859 MJ1464 MJ1464

Probab=98.48  E-value=6.9e-07  Score=83.81  Aligned_cols=96  Identities=15%  Similarity=0.059  Sum_probs=66.1

Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN  600 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g  600 (663)
                      |+.++.++++++|++|+|+|+.++...... .+...+.       ..+.|+|+|+||+|+....   ..+....+....+
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~-------~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~   70 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL-------ELGKKLLIVLNKADLVPKE---VLEKWKSIKESEG   70 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH-------hCCCcEEEEEEhHHhCCHH---HHHHHHHHHHhCC
Confidence            567888999999999999999876533221 2222222       1358999999999985421   1111112333344


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                       .+++.+||+++.|++++++.|.+.+..
T Consensus        71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          71 -IPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence             468999999999999999999887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.44  E-value=2.9e-06  Score=92.21  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCc--------------eeEEEEEEeCCCccc----
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE--------------TIIRLQLWDIAGQER----  520 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge--------------~~vkLqIwDTpGQEr----  520 (663)
                      ++|+|||.++||||||++++.+........+..+++...-.+.+.+.              ....+.|.|+||-..    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            68999999999999999999987644333344444444334443331              013589999999432    


Q ss_pred             hhhhHHHH---HhcCcEEEEEEeCC
Q psy4094         521 FGNMTRVY---YKEAVGAFIVFDVT  542 (663)
Q Consensus       521 frsl~~~~---~r~ADgaILVyDVT  542 (663)
                      -..+...+   +++||++|+|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            12233333   57899999999984

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.43  E-value=7.1e-07  Score=97.26  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceee---eceeEEEecCCceeEEEEEEeCCCccchhhhHHHH-----
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV---DFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVY-----  528 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tigi---Df~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~-----  528 (663)
                      ..++|+|+|++|+|||||||.|.|-.........+|+   ......+.....  -++.+||.||......-...|     
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~--pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF--PNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS---TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC--CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3589999999999999999999763332222222221   111222222221  248999999964333333333     


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCC--CC----CCCCC----HHHHHHHHH
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQP--KE----GIANN----PAKIDEFIK  597 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~--de----r~~Vs----~eei~qlak  597 (663)
                      +...|.+|++.+    ..|....-| ...+..       -+.++.+|-+|+|..  .+    .+...    .+++++-|.
T Consensus       112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~-------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~  180 (376)
T PF05049_consen  112 FYRYDFFIIISS----ERFTENDVQLAKEIQR-------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL  180 (376)
T ss_dssp             GGG-SEEEEEES----SS--HHHHHHHHHHHH-------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred             ccccCEEEEEeC----CCCchhhHHHHHHHHH-------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence            456898888775    334443333 344442       358999999999951  11    01122    334444443


Q ss_pred             H----cCC--CeEEEEeCCC--CcCHHHHHHHHHHHHHhhhh
Q psy4094         598 E----HNF--SGWFETSAKD--NINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       598 ~----~g~--i~ffEtSAKt--GeNVeELFe~IIr~Ile~~k  631 (663)
                      .    .|.  .++|-+|+.+  .+++..|.+.+.+.+..+++
T Consensus       181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence            3    232  3688899876  46788899999888877765

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.42  E-value=9.1e-07  Score=93.50  Aligned_cols=56  Identities=16%  Similarity=-0.014  Sum_probs=40.4

Q ss_pred             CcEEEEEeCCCCCCCCCCCCHHHHHHHH-HHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         569 IPCVLLANKCDQPKEGIANNPAKIDEFI-KEHNFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       569 IPIILVGNKsDL~der~~Vs~eei~qla-k~~g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      ..-|+|.||+||.... ....+.+.+.+ ..+...++|++||++|+|++++++||..+
T Consensus       231 ~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5669999999997532 11233333333 33445689999999999999999999774

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.39  E-value=2e-06  Score=86.42  Aligned_cols=54  Identities=17%  Similarity=0.073  Sum_probs=42.5

Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         572 VLLANKCDQPKEGIANNPAKIDEFIKEH-NFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       572 ILVGNKsDL~der~~Vs~eei~qlak~~-g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      |||+||.||...- ..+.+.+.+-++.. +-.+||++|+++|+|+++++.|+...+
T Consensus       146 llVInK~DLa~~v-~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYV-GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHh-CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            7999999998755 44556555555544 446899999999999999999987754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.36  E-value=9.7e-06  Score=89.59  Aligned_cols=155  Identities=19%  Similarity=0.193  Sum_probs=95.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC----CCCC------------cccc-----ceeeec---eeEEEecCCceeEEEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ----FFSP------------HYRA-----TIGVDF---ALKVLSWDHETIIRLQL  512 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~----~fse------------e~~~-----TigiDf---~~ktV~vdge~~vkLqI  512 (663)
                      ..+-|.|+|..++|||||+++|++.    ....            ...+     |..--|   ....+...++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3478999999999999999999976    2221            1111     111223   33344444333577899


Q ss_pred             EeCCCcc--------chhh---------------------hHHHHHh-cCcEEEEEE-eCC--C--cccH-HHHHHHHHH
Q psy4094         513 WDIAGQE--------RFGN---------------------MTRVYYK-EAVGAFIVF-DVT--R--AATF-DAVLKWKQD  556 (663)
Q Consensus       513 wDTpGQE--------rfrs---------------------l~~~~~r-~ADgaILVy-DVT--d--~~SF-e~L~~wiee  556 (663)
                      +||+|-.        +-..                     -+...+. .+++.|+|. |.+  +  ++.+ +.-..|+.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999822        1111                     0344555 899999998 653  1  2233 333578888


Q ss_pred             HHhhcCCCCCCCCcEEEEEeCCC-CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC--cCHHHHHHHHH
Q psy4094         557 LDAKVTLPDGNPIPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN--INIDDAAKTLV  623 (663)
Q Consensus       557 L~~~~~~~~~~~IPIILVGNKsD-L~der~~Vs~eei~qlak~~g~i~ffEtSAKtG--eNVeELFe~II  623 (663)
                      |+.       .++|+|+|.||+| +..+    ..+.+..+...++ ++++.+|+...  ..|..+|+.++
T Consensus       176 Lk~-------~~kPfiivlN~~dp~~~e----t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       176 LKE-------LNKPFIILLNSTHPYHPE----TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHh-------cCCCEEEEEECcCCCCch----hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHH
Confidence            874       4699999999999 4332    3344456666777 46777776543  34555544443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.36  E-value=7.2e-06  Score=86.15  Aligned_cols=134  Identities=17%  Similarity=0.245  Sum_probs=74.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCc----------cccceeeeceeEEEecCCceeEEEEEEeCCCccc-------
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPH----------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-------  520 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee----------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-------  520 (663)
                      .|+|+|+|..|+|||||++.|++......          ...+..+......+.-++ ..+.|.|+||+|-..       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~-~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENG-VKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETC-EEEEEEEEEEC-CSSSSTHCHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCC-cceEEEEEeCCCccccccchhh
Confidence            58999999999999999999997544322          123333333333343344 478999999999321       


Q ss_pred             hhhh-------HHHHH-------------hcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         521 FGNM-------TRVYY-------------KEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       521 frsl-------~~~~~-------------r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      |..+       ...|+             ...|+||++++.+... .-..+ ..++.|..        .+.+|-|..|+|
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~--------~vNvIPvIaKaD  153 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK--------RVNVIPVIAKAD  153 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT--------TSEEEEEESTGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc--------cccEEeEEeccc
Confidence            1111       11111             2368999999987532 22222 45555553        378899999999


Q ss_pred             CCCCC-CCCCHHHHHHHHHHcCC
Q psy4094         580 QPKEG-IANNPAKIDEFIKEHNF  601 (663)
Q Consensus       580 L~der-~~Vs~eei~qlak~~g~  601 (663)
                      ..... .....+.+.+-+..+++
T Consensus       154 ~lt~~el~~~k~~i~~~l~~~~I  176 (281)
T PF00735_consen  154 TLTPEELQAFKQRIREDLEENNI  176 (281)
T ss_dssp             GS-HHHHHHHHHHHHHHHHHTT-
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCc
Confidence            63311 01112334444555664

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.33  E-value=1.8e-06  Score=93.38  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE  598 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~  598 (663)
                      +-..+....+.++|++|+|+|+.++. .+..+..|+..+.       ..++|+|||+||+||....   ..+.....+..
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-------~~~ip~ILVlNK~DLv~~~---~~~~~~~~~~~  147 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE-------STGLEIVLCLNKADLVSPT---EQQQWQDRLQQ  147 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEEchhcCChH---HHHHHHHHHHh
Confidence            33445566789999999999999876 5556778876654       2469999999999996422   11222333345


Q ss_pred             cCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         599 HNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       599 ~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      .++ .+|.+||+++.|+++|++.|...+
T Consensus       148 ~g~-~v~~iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        148 WGY-QPLFISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             cCC-eEEEEEcCCCCCHHHHhhhhccce
Confidence            665 799999999999999999986543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.29  E-value=2.4e-06  Score=92.25  Aligned_cols=96  Identities=22%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID----  593 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~----  593 (663)
                      +++|..+...+++.++++++|+|+.+..     ..|+..+.+++     .+.|+|||+||+||....  +..+.+.    
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-----~~~piilV~NK~DLl~k~--~~~~~~~~~l~  117 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-----GGNPVLLVGNKIDLLPKS--VNLSKIKEWMK  117 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-----CCCCEEEEEEchhhCCCC--CCHHHHHHHHH
Confidence            5678889999999999999999997644     34666666543     257999999999996532  3334444    


Q ss_pred             HHHHHcCCC--eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         594 EFIKEHNFS--GWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       594 qlak~~g~i--~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      ++++.+++.  .++++||++|+|++++|..|.+.
T Consensus       118 ~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       118 KRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            446666642  58999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.27  E-value=2.5e-06  Score=89.30  Aligned_cols=88  Identities=15%  Similarity=0.044  Sum_probs=68.1

Q ss_pred             HHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094         526 RVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f  604 (663)
                      +..+.++|++|+|+|+.++. ++..+..|+..+..       .++|+|+|+||+||....   .......+....+ .++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~~~---~~~~~~~~~~~~g-~~v  141 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-------AGIEPVIVLTKADLLDDE---EEELELVEALALG-YPV  141 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCChH---HHHHHHHHHHhCC-CeE
Confidence            44588999999999999988 88999999887763       358999999999996532   1112233334456 479


Q ss_pred             EEEeCCCCcCHHHHHHHHHH
Q psy4094         605 FETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr  624 (663)
                      +.+||+++.|+++|+..|..
T Consensus       142 ~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         142 LAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EEEECCCCccHHHHHhhhcc
Confidence            99999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.26  E-value=1.4e-06  Score=91.66  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             HHhcCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDA-VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~-L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      .+.++|++|+|+|+.++..+.. +..|+..+..       .++|+|||+||+||....  .......+++...+. ++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~~g~-~v~~  146 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDL--EEARELLALYRAIGY-DVLE  146 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCH--HHHHHHHHHHHHCCC-eEEE
Confidence            4689999999999998876554 4778776652       468999999999996322  112234445555664 7999


Q ss_pred             EeCCCCcCHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLV  623 (663)
Q Consensus       607 tSAKtGeNVeELFe~II  623 (663)
                      +||+++.|++++++.+.
T Consensus       147 vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        147 LSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EeCCCCccHHHHHhhcc
Confidence            99999999999998864

>KOG1486|consensus

Probab=98.26  E-value=1.5e-05  Score=83.05  Aligned_cols=161  Identities=16%  Similarity=0.203  Sum_probs=106.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------hhhHHHHHhc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------GNMTRVYYKE  531 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------rsl~~~~~r~  531 (663)
                      .+|++||-+.||||||+..+..-.-........+.....-.+.+++   ..+|+.|.||.-.-       ........+.
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g---a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG---ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC---ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            6999999999999999988765433323333333444455566666   47999999984321       1223345678


Q ss_pred             CcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCC----------------------------------------C------
Q psy4094         532 AVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTL----------------------------------------P------  564 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~----------------------------------------~------  564 (663)
                      ||.+++|.|.+..+.-..+ ..-++.+--.++.                                        +      
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            9999999999975443321 1111111100000                                        0      


Q ss_pred             ---------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         565 ---------------DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       565 ---------------~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                                     +.--++++-|-||+|      +++.+++..+|++.+.   +-+|+..+.|++.+++.|-..+--.
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID------~vs~eevdrlAr~Pns---vViSC~m~lnld~lle~iWe~l~L~  290 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID------QVSIEEVDRLARQPNS---VVISCNMKLNLDRLLERIWEELNLV  290 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccc------eecHHHHHHHhcCCCc---EEEEeccccCHHHHHHHHHHHhceE
Confidence                           001367788999999      5788999999988774   6788899999999999998877554


Q ss_pred             hh
Q psy4094         630 DK  631 (663)
Q Consensus       630 ~k  631 (663)
                      +-
T Consensus       291 rv  292 (364)
T KOG1486|consen  291 RV  292 (364)
T ss_pred             EE
Confidence            43

>PRK12288 GTPase RsgA; Reviewed

Probab=98.25  E-value=3e-06  Score=91.43  Aligned_cols=90  Identities=10%  Similarity=0.075  Sum_probs=67.9

Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      ...|+|.+++||++....+|..+..|+..+.       ..++|+|||+||+||...................+. ++|++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-------~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~-~v~~v  188 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE-------TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGY-RVLMV  188 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH-------hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCC-eEEEE
Confidence            3567999999999998889999999987554       245899999999999653200111222333445564 89999


Q ss_pred             eCCCCcCHHHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~  625 (663)
                      ||+++.|+++|+++|...
T Consensus       189 SA~tg~GideL~~~L~~k  206 (347)
T PRK12288        189 SSHTGEGLEELEAALTGR  206 (347)
T ss_pred             eCCCCcCHHHHHHHHhhC
Confidence            999999999999998754

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=8.1e-06  Score=90.08  Aligned_cols=114  Identities=19%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh--C--------------CCC------CccccceeeeceeEEEecCCceeEEEEEEeC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH--Q--------------FFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDI  515 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg--~--------------~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDT  515 (663)
                      ....+||-++.+|||||...++-  +              .+.      -+..++|.+......+.+.+   +.++|.||
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~---~~iNLLDT   88 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD---CLVNLLDT   88 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC---eEEeccCC
Confidence            45789999999999999999861  1              111      12234444444455555554   57999999


Q ss_pred             CCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       516 pGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      |||++|..-+.+-+.-+|.+++|+|+..+-.-+.+ .+++.++       .-++|||-+.||.|...
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcr-------lR~iPI~TFiNKlDR~~  147 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCR-------LRDIPIFTFINKLDREG  147 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHh-------hcCCceEEEeecccccc
Confidence            99999998888888999999999999876654443 3333333       24699999999999765

>KOG0467|consensus

Probab=98.23  E-value=4.4e-06  Score=96.54  Aligned_cols=114  Identities=20%  Similarity=0.213  Sum_probs=82.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .....+|+|+.+...|||||+..++...                ...+..++|++..  -.+..-.+ .+.++++|+|||
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmks--s~is~~~~-~~~~nlidspgh   82 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKS--SAISLLHK-DYLINLIDSPGH   82 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeec--cccccccC-ceEEEEecCCCc
Confidence            3456799999999999999999997321                1123334444333  33333222 478999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      .+|.+......+-+|++++++|+..+---+...-+++.+.        .+...|||.||+|
T Consensus        83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid  135 (887)
T KOG0467|consen   83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID  135 (887)
T ss_pred             cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence            9999999999999999999999998765555433332222        3467899999999

>smart00053 DYNc Dynamin, GTPase

Probab=98.22  E-value=1.6e-05  Score=82.08  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCccc-------------hhhhHHHHHhc-CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q psy4094         508 IRLQLWDIAGQER-------------FGNMTRVYYKE-AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVL  573 (663)
Q Consensus       508 vkLqIwDTpGQEr-------------frsl~~~~~r~-ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIIL  573 (663)
                      ..|.|+|+||-..             ...+...|+++ .+++++|+|+.....-.....+...+.       ..+.++|+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld-------~~~~rti~  197 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD-------PQGERTIG  197 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH-------HcCCcEEE
Confidence            5799999999632             23456677884 458888998875433333333333343       24589999


Q ss_pred             EEeCCCCCCC
Q psy4094         574 LANKCDQPKE  583 (663)
Q Consensus       574 VGNKsDL~de  583 (663)
                      |+||+|....
T Consensus       198 ViTK~D~~~~  207 (240)
T smart00053      198 VITKLDLMDE  207 (240)
T ss_pred             EEECCCCCCc
Confidence            9999998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.18  E-value=8.4e-06  Score=88.80  Aligned_cols=164  Identities=15%  Similarity=0.181  Sum_probs=102.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC--------------ccccceeeeceeEEEecCCcee---------------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP--------------HYRATIGVDFALKVLSWDHETI---------------  507 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse--------------e~~~TigiDf~~ktV~vdge~~---------------  507 (663)
                      ..+.|.+.|+.++|||||+..+..+..+.              +-......+.....+-+++...               
T Consensus       116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v  195 (527)
T COG5258         116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV  195 (527)
T ss_pred             ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence            45899999999999999998887443321              1122233333333333333211               


Q ss_pred             -----EEEEEEeCCCccchhh--hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 -----IRLQLWDIAGQERFGN--MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 -----vkLqIwDTpGQErfrs--l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                           --+.+.|+.|||.|-.  +...+=.+.|..+|++.+++.-+--.-..+--.+        .-.+|+|+|.+|+|+
T Consensus       196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~--------a~~lPviVvvTK~D~  267 (527)
T COG5258         196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIAL--------AMELPVIVVVTKIDM  267 (527)
T ss_pred             hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhh--------hhcCCEEEEEEeccc
Confidence                 2378999999999843  4445557799999999999876544432222111        235899999999998


Q ss_pred             CCC-CCCCCHHHHHHHHHHc------------------------CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         581 PKE-GIANNPAKIDEFIKEH------------------------NFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       581 ~de-r~~Vs~eei~qlak~~------------------------g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      .++ ++.-..+++..+++.-                        +.+++|++|+.+|++++-|.+.+ ..+..+
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp~r  340 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLPKR  340 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH-HhCCcc
Confidence            653 3222333333333321                        23688999999999987654443 444443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.14  E-value=2e-05  Score=91.12  Aligned_cols=122  Identities=12%  Similarity=0.104  Sum_probs=72.7

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hh---
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NM---  524 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl---  524 (663)
                      +..++|+|||..|||||||+|.+++... ........+.........+++   ..|.|+||||-....       .+   
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG---~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG---VKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC---ceEEEEECCCCCccccchHHHHHHHHH
Confidence            3457999999999999999999998653 322211111122222223344   468999999965321       11   


Q ss_pred             HHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         525 TRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       525 ~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      ...++.  .+|++|+|..++.......-..++..|...+...  .-..+|||.+..|...
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence            122333  4799999998864333222224555555443211  1135689999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG3887|consensus

Probab=98.14  E-value=1.4e-05  Score=82.90  Aligned_cols=165  Identities=21%  Similarity=0.302  Sum_probs=99.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEE--EecCCceeEEEEEEeCCCccchh---hhHHHHHhcCcE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV--LSWDHETIIRLQLWDIAGQERFG---NMTRVYYKEAVG  534 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~kt--V~vdge~~vkLqIwDTpGQErfr---sl~~~~~r~ADg  534 (663)
                      +|+++|...+|||++..-.... ..+.  .|...+...+.  -.+.+ .-+.+++||.|||-.|-   .-....++++.+
T Consensus        29 ~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   29 RILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             eEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            5999999999999998654432 2221  12211111111  11111 24789999999997542   235677899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHH----HHHHHHcCC----CeEE
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKI----DEFIKEHNF----SGWF  605 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei----~qlak~~g~----i~ff  605 (663)
                      .|+|+|..+ +-.+.+..+...+...  ..-.+++.+=+...|.|-.. +.....+..+    ..-+...|.    +.|+
T Consensus       105 LifvIDaQd-dy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~  181 (347)
T KOG3887|consen  105 LIFVIDAQD-DYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFY  181 (347)
T ss_pred             EEEEEechH-HHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEE
Confidence            999999875 2233344444333322  12246788889999999543 3222222222    222333333    3455


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                      -+|. ..|.|-|.|..+++.+..+-..
T Consensus       182 LTSI-yDHSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  182 LTSI-YDHSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             Eeee-cchHHHHHHHHHHHHHhhhchh
Confidence            5554 6889999999999998877653

>KOG0099|consensus

Probab=98.11  E-value=8.9e-06  Score=85.03  Aligned_cols=73  Identities=12%  Similarity=0.125  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc-------ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA-------ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~-------~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      +++++||++||.+-+.-|..++....++|+|+..+.-       .+-.++.+-+..++.+........+-+||..||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            6799999999999999999999999999999987641       233445544455554444444456889999999997

>KOG0464|consensus

Probab=98.06  E-value=2.3e-06  Score=93.55  Aligned_cols=131  Identities=24%  Similarity=0.329  Sum_probs=101.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHh--------------C----CCCCccccceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVH--------------Q----FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA  516 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg--------------~----~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTp  516 (663)
                      .....+|.||.+-.+||||...|++-              +    -...+..+++++......+++.|   .+++++||+
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg---~rinlidtp  110 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG---HRINLIDTP  110 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc---ceEeeecCC
Confidence            34456899999999999999998761              1    11234556677666677777776   489999999


Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI  596 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla  596 (663)
                      ||.+|+-...++++--|+++.|||.+-+-.-+.+..|.+.-        ..++|-++..||.|.....+....+.+++.+
T Consensus       111 ghvdf~leverclrvldgavav~dasagve~qtltvwrqad--------k~~ip~~~finkmdk~~anfe~avdsi~ekl  182 (753)
T KOG0464|consen  111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD--------KFKIPAHCFINKMDKLAANFENAVDSIEEKL  182 (753)
T ss_pred             CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc--------ccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence            99999999999999999999999999888888888886543        3569999999999987666544444444443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.04  E-value=9.3e-06  Score=84.79  Aligned_cols=150  Identities=14%  Similarity=0.135  Sum_probs=85.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh----------------------CCCCCccccce----eeeceeEEEecCCce-----
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH----------------------QFFSPHYRATI----GVDFALKVLSWDHET-----  506 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg----------------------~~fsee~~~Ti----giDf~~ktV~vdge~-----  506 (663)
                      .+.|.|-|.+|+|||||+..|..                      +.+..+..+..    ....+.+.+--.+.-     
T Consensus        29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~  108 (266)
T PF03308_consen   29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR  108 (266)
T ss_dssp             SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred             ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence            47999999999999999999862                      11111111111    011222322211100     


Q ss_pred             ------------eEEEEEEeCCC--ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE
Q psy4094         507 ------------IIRLQLWDIAG--QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV  572 (663)
Q Consensus       507 ------------~vkLqIwDTpG--QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII  572 (663)
                                  -+.+.|+.|.|  |.+.     ....-||.+++|.-..-.+..+.++.=+-++-            =|
T Consensus       109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------------Di  171 (266)
T PF03308_consen  109 ATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------------DI  171 (266)
T ss_dssp             HHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SE
T ss_pred             hHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------------cE
Confidence                        04567777775  4433     24567999999998887777666553333333            28


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         573 LLANKCDQPKEGIANNPAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       573 LVGNKsDL~der~~Vs~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      +|.||+|+....  ....+++..+....      ..+++.|||.++.||++|++.|.++.
T Consensus       172 ~vVNKaD~~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  172 FVVNKADRPGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             EEEE--SHHHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCChHHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            999999964432  12333344443321      25799999999999999999988754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0460|consensus

Probab=98.01  E-value=1.7e-05  Score=85.35  Aligned_cols=146  Identities=16%  Similarity=0.096  Sum_probs=101.5

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHh----------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVH----------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg----------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ....++|.-||+...|||||.-.+..                +...++..+.|+++.....+...   .-++--.|+|||
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa---~RhYaH~DCPGH  127 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA---KRHYAHTDCPGH  127 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecc---ccccccCCCCch
Confidence            44568999999999999999876641                22234556677666555444433   346778899999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--IANNPAKIDEFI  596 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--~~Vs~eei~qla  596 (663)
                      .+|--.+..-..+.|++|||+..+|...-+.-..++. -+ .+   +.  ..|++..||.|+.++.  .+...-++++++
T Consensus       128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-Ar-QV---GV--~~ivvfiNKvD~V~d~e~leLVEmE~RElL  200 (449)
T KOG0460|consen  128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-AR-QV---GV--KHIVVFINKVDLVDDPEMLELVEMEIRELL  200 (449)
T ss_pred             HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HH-Hc---CC--ceEEEEEecccccCCHHHHHHHHHHHHHHH
Confidence            9998877777788999999999999876665443331 12 11   11  3568889999997533  123345788999


Q ss_pred             HHcCC----CeEEEEeCC
Q psy4094         597 KEHNF----SGWFETSAK  610 (663)
Q Consensus       597 k~~g~----i~ffEtSAK  610 (663)
                      ..+|+    .+++.-||.
T Consensus       201 se~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  201 SEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHcCCCCCCCCeeecchh
Confidence            99886    567776654

>cd01900 YchF YchF subfamily

Probab=97.94  E-value=2.1e-05  Score=82.61  Aligned_cols=82  Identities=13%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccc----hh
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQER----FG  522 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQEr----fr  522 (663)
                      |+|||.++||||||++++.+........+..+++...-.+.+.+..              ...++++|+||-..    ..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999876654444555555555555554320              13589999999432    12


Q ss_pred             hhHHHH---HhcCcEEEEEEeCC
Q psy4094         523 NMTRVY---YKEAVGAFIVFDVT  542 (663)
Q Consensus       523 sl~~~~---~r~ADgaILVyDVT  542 (663)
                      .+...|   +++||++|+|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            333333   46799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=0.00011  Score=79.94  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC---------------ceeEEEEEEeCCCcc----
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH---------------ETIIRLQLWDIAGQE----  519 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg---------------e~~vkLqIwDTpGQE----  519 (663)
                      +++.|||-++||||||++.+..........|..+++-..-.+.+.+               .-.+.+.++|++|-.    
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            7899999999999999999987664434444444433332222211               012568999999843    


Q ss_pred             chhhhHHHH---HhcCcEEEEEEeCC
Q psy4094         520 RFGNMTRVY---YKEAVGAFIVFDVT  542 (663)
Q Consensus       520 rfrsl~~~~---~r~ADgaILVyDVT  542 (663)
                      .-+.+-..|   +|++|+++.|+|+.
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEec
Confidence            234455555   57899999999887

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.91  E-value=7.5e-05  Score=81.09  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=74.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc----------cccceeeeceeEEEecCCceeEEEEEEeCCCccch-----
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH----------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-----  521 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee----------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-----  521 (663)
                      ..|.|+++|..|.|||||++.|++.....+          ..+++.+.+..-.+.-++. .+.|+++||+|--++     
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~-~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF-HLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe-EEEEEEeccCCccccccccc
Confidence            468999999999999999999997533211          3455555555555555554 789999999994322     


Q ss_pred             --h-------hhHHHHH--------------hcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         522 --G-------NMTRVYY--------------KEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       522 --r-------sl~~~~~--------------r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                        .       .....|+              ..+|+||+.+-.+. ..+..+. ..|..|..        .+-+|=|+-|
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~--------~vNlIPVI~K  171 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK--------RVNLIPVIAK  171 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc--------ccCeeeeeec
Confidence              1       1222333              13689998887653 2333322 34444543        3567888899


Q ss_pred             CCCC
Q psy4094         578 CDQP  581 (663)
Q Consensus       578 sDL~  581 (663)
                      +|..
T Consensus       172 aD~l  175 (373)
T COG5019         172 ADTL  175 (373)
T ss_pred             cccC
Confidence            9963

>cd01858 NGP_1 NGP-1

Probab=97.89  E-value=5.3e-05  Score=71.57  Aligned_cols=88  Identities=16%  Similarity=0.093  Sum_probs=56.7

Q ss_pred             HHhcCcEEEEEEeCCCccc--HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094         528 YYKEAVGAFIVFDVTRAAT--FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~S--Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff  605 (663)
                      .+.++|++|+|+|+.++..  ...+..+   +..     ...++|+|+|.||+|+....  .....+..+...+.. ..+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~-----~~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~-~~~   73 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKK-----EKPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPT-IAF   73 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHH---HHh-----ccCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcE-EEE
Confidence            4678999999999998642  2223233   221     12358999999999985422  111222222222222 257


Q ss_pred             EEeCCCCcCHHHHHHHHHHHH
Q psy4094         606 ETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~I  626 (663)
                      .+||+.+.|++++++.|...+
T Consensus        74 ~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          74 HASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EeeccccccHHHHHHHHHHHH
Confidence            899999999999999997654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.86  E-value=2.9e-05  Score=72.28  Aligned_cols=54  Identities=24%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      +++|+|.+|||||||+|++++..... .....|.......+.+++    .+.||||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP----TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC----CEEEEECCCc
Confidence            89999999999999999999876542 222223333344455544    3789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0410|consensus

Probab=97.85  E-value=3.6e-05  Score=82.54  Aligned_cols=156  Identities=18%  Similarity=0.111  Sum_probs=105.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc---------chhhhHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE---------RFGNMTRVYYK  530 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE---------rfrsl~~~~~r  530 (663)
                      -|.|+|-.++|||||++.+.+..........-+.|...+...+..+  -.+.+.||-|--         -|+..... +.
T Consensus       180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLee-Va  256 (410)
T KOG0410|consen  180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLEE-VA  256 (410)
T ss_pred             eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHHH-Hh
Confidence            5999999999999999999976666665656666766677777655  357889999832         23222222 45


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      .+|.+|.|.|++++..-+.....+..|..+---......-+|=|-||+|.....   ..+      ..++   -+.+||+
T Consensus       257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~---~e~------E~n~---~v~isal  324 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE---VEE------EKNL---DVGISAL  324 (410)
T ss_pred             hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc---Ccc------ccCC---ccccccc
Confidence            799999999999998766665555555532100001112357788999986643   111      1222   4679999


Q ss_pred             CCcCHHHHHHHHHHHHHhhh
Q psy4094         611 DNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~~  630 (663)
                      +|+|++++...+-..+....
T Consensus       325 tgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  325 TGDGLEELLKAEETKVASET  344 (410)
T ss_pred             cCccHHHHHHHHHHHhhhhh
Confidence            99999999988877665544

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.82  E-value=5.8e-05  Score=70.30  Aligned_cols=77  Identities=16%  Similarity=0.106  Sum_probs=53.1

Q ss_pred             HHHHhcCcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCe
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG  603 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~  603 (663)
                      ...+.++|++|+|+|+.++.+..  .+..|+...        ..+.|+|+|+||+|+....   ......+++...+ ..
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~-~~   73 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DPRKKNILLLNKADLLTEE---QRKAWAEYFKKEG-IV   73 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cCCCcEEEEEechhcCCHH---HHHHHHHHHHhcC-Ce
Confidence            34578899999999999876644  344444322        1358999999999985422   1233445555556 47


Q ss_pred             EEEEeCCCCcC
Q psy4094         604 WFETSAKDNIN  614 (663)
Q Consensus       604 ffEtSAKtGeN  614 (663)
                      ++++||.++.+
T Consensus        74 ii~iSa~~~~~   84 (141)
T cd01857          74 VVFFSALKENA   84 (141)
T ss_pred             EEEEEecCCCc
Confidence            99999998864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.73  E-value=0.00014  Score=68.77  Aligned_cols=84  Identities=13%  Similarity=0.011  Sum_probs=55.2

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQ-DLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wie-eL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      |++|+|+|+.++.+...  .|+. ...      ...++|+|+|+||+|+....  ...+.+..+....+ ..++.+||++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~------~~~~~p~IiVlNK~Dl~~~~--~~~~~~~~~~~~~~-~~ii~vSa~~   69 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLI------KEKGKKLILVLNKADLVPKE--VLRKWLAYLRHSYP-TIPFKISATN   69 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHH------hcCCCCEEEEEechhcCCHH--HHHHHHHHHHhhCC-ceEEEEeccC
Confidence            78999999998765543  2333 111      12458999999999985421  01111122222223 4689999999


Q ss_pred             CcCHHHHHHHHHHHHH
Q psy4094         612 NINIDDAAKTLVQKIL  627 (663)
Q Consensus       612 GeNVeELFe~IIr~Il  627 (663)
                      |.|++++++.|.+.+.
T Consensus        70 ~~gi~~L~~~i~~~~~   85 (155)
T cd01849          70 GQGIEKKESAFTKQTN   85 (155)
T ss_pred             CcChhhHHHHHHHHhH
Confidence            9999999999987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00026  Score=75.43  Aligned_cols=107  Identities=12%  Similarity=0.053  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC-
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA-  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~-  586 (663)
                      +.+.|+.|.|--.-.   -.....||.+++|.=..-.+..+.++.=+-+|-.            |+|.||.|....... 
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------------i~vINKaD~~~A~~a~  208 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------------IIVINKADRKGAEKAA  208 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------------eeeEeccChhhHHHHH
Confidence            457788887632111   1245569999988877667777776544434432            799999996543200 


Q ss_pred             CCHHHHHHHHH----Hc-CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         587 NNPAKIDEFIK----EH-NFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       587 Vs~eei~qlak----~~-g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      -....+.++..    .. +..+++.|||..|+|+++|++.|.++.--.
T Consensus       209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            00111111111    11 225789999999999999999998876433

>KOG1547|consensus

Probab=97.70  E-value=0.00036  Score=72.60  Aligned_cols=141  Identities=16%  Similarity=0.260  Sum_probs=84.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC---------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS---------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF------  521 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf------  521 (663)
                      ..|+|+|||.+|.|||||++.+......         .-+..|+.+.....++.-++- ..+|.++||+|--++      
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV-klkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV-KLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce-EEEEEEecCCCcccccCccch
Confidence            3689999999999999999998743221         133445555555555555554 688999999993221      


Q ss_pred             -h-------hhHHHHHh--------------cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         522 -G-------NMTRVYYK--------------EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       522 -r-------sl~~~~~r--------------~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                       .       .....|++              .+++|++.+-.+ +.++.-+. .+++.|...        +-||-|+-|+
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~v--------vNvvPVIaka  194 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTEV--------VNVVPVIAKA  194 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhhh--------heeeeeEeec
Confidence             1       12222332              367888877666 34444432 334444432        4567788899


Q ss_pred             CCC--CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         579 DQP--KEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       579 DL~--der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      |-.  ++| ..-.+.+++-+..+++ .+|+--+
T Consensus       195 DtlTleEr-~~FkqrI~~el~~~~i-~vYPq~~  225 (336)
T KOG1547|consen  195 DTLTLEER-SAFKQRIRKELEKHGI-DVYPQDS  225 (336)
T ss_pred             ccccHHHH-HHHHHHHHHHHHhcCc-ccccccc
Confidence            943  222 3345566666777775 5554433

>KOG2655|consensus

Probab=97.70  E-value=0.00047  Score=75.21  Aligned_cols=115  Identities=16%  Similarity=0.254  Sum_probs=72.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC---------ccccceeeeceeEEEecCCceeEEEEEEeCCCccc-------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP---------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-------  520 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse---------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-------  520 (663)
                      ..|.++++|++|.|||||||.|+...+..         ....++.+......+.-+|- .++|+++||||--+       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~-~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGV-KLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCe-EEeeEEeccCCCccccccccc
Confidence            35899999999999999999988654332         22234454544444444444 79999999999332       


Q ss_pred             hh-------hhHHHHHh-------------cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         521 FG-------NMTRVYYK-------------EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       521 fr-------sl~~~~~r-------------~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      |+       .....|+.             .+|+||+.+..+.. .+..+. ..+..|.        ..+.+|-|+-|.|
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~--------~~vNiIPVI~KaD  169 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS--------KKVNLIPVIAKAD  169 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh--------ccccccceeeccc
Confidence            21       12233331             47899998876632 222221 3334443        3367788888999


Q ss_pred             CC
Q psy4094         580 QP  581 (663)
Q Consensus       580 L~  581 (663)
                      ..
T Consensus       170 ~l  171 (366)
T KOG2655|consen  170 TL  171 (366)
T ss_pred             cC
Confidence            63

>cd01856 YlqF YlqF

Probab=97.69  E-value=0.00012  Score=70.41  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             CCc-cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy4094         516 AGQ-ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE  594 (663)
Q Consensus       516 pGQ-Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q  594 (663)
                      +|| .+........+.+||++|+|+|+.++...... .++..+         .+.|+|+|.||+|+....   ......+
T Consensus         3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~---------~~k~~ilVlNK~Dl~~~~---~~~~~~~   69 (171)
T cd01856           3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL---------GNKPRIIVLNKADLADPK---KTKKWLK   69 (171)
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh---------cCCCEEEEEehhhcCChH---HHHHHHH
Confidence            444 35556667788999999999999876543221 122211         237899999999985421   1111212


Q ss_pred             HHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         595 FIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       595 lak~~g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      +....+ ..++.+||+++.|++++...+...+.
T Consensus        70 ~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          70 YFESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HHHhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            223333 36899999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0085|consensus

Probab=97.67  E-value=6.7e-05  Score=77.57  Aligned_cols=124  Identities=19%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      .+.+.+.|++||..-+.-|.+++.++-.+|+++.++.-+       .-.++.+-...++.++......+.++|+..||.|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            366889999999999999999999998888877665311       1223334444555556677788999999999999


Q ss_pred             CCCCCC---------------CCCHHHHHHHHH----HcCC-----CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         580 QPKEGI---------------ANNPAKIDEFIK----EHNF-----SGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       580 L~der~---------------~Vs~eei~qlak----~~g~-----i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      |.++..               ..+.+.+++|.-    ..+-     +.-..+.|..-+||.-+|..+-..|+...
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            865431               112233333332    2221     11235668888999999999988887653

>cd01859 MJ1464 MJ1464

Probab=97.67  E-value=0.00011  Score=69.07  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=38.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      ..+|+++|.+++|||||+++|.+... ..+.++.|.......+..++    .+.||||||
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~----~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS----KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC----CEEEEECcC
Confidence            36899999999999999999996542 33444555443333333333    489999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=97.65  E-value=0.00012  Score=70.44  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=38.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ..++|+++|.+|||||||++++.+..+. ....+..+  +....+.++.    .+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~~----~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKISP----GIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEecC----CEEEEECCCC
Confidence            3479999999999999999999987663 22223333  3333344432    4789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1954|consensus

Probab=97.61  E-value=0.00059  Score=74.53  Aligned_cols=116  Identities=19%  Similarity=0.249  Sum_probs=76.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccc-cceeeeceeEEEecC------Cce--------------------------
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYR-ATIGVDFALKVLSWD------HET--------------------------  506 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~-~TigiDf~~ktV~vd------ge~--------------------------  506 (663)
                      -|+++|.=..||||||+.++.+.|..... +..+.++....+.-+      |+.                          
T Consensus        60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs  139 (532)
T KOG1954|consen   60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS  139 (532)
T ss_pred             eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence            69999999999999999999888763221 222223333332211      110                          


Q ss_pred             ------eEEEEEEeCCCcc-----------chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC
Q psy4094         507 ------IIRLQLWDIAGQE-----------RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI  569 (663)
Q Consensus       507 ------~vkLqIwDTpGQE-----------rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I  569 (663)
                            --.+.|+||||.-           .|.....-|...||.+||+||.-.-+--+.....+..|+-       ..-
T Consensus       140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-------~Ed  212 (532)
T KOG1954|consen  140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-------HED  212 (532)
T ss_pred             cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-------Ccc
Confidence                  0248999999932           2445667788999999999998765544455555666663       233


Q ss_pred             cEEEEEeCCCCCC
Q psy4094         570 PCVLLANKCDQPK  582 (663)
Q Consensus       570 PIILVGNKsDL~d  582 (663)
                      .|-||.||.|..+
T Consensus       213 kiRVVLNKADqVd  225 (532)
T KOG1954|consen  213 KIRVVLNKADQVD  225 (532)
T ss_pred             eeEEEeccccccC
Confidence            4678999999644

>KOG1143|consensus

Probab=97.58  E-value=0.00021  Score=77.87  Aligned_cols=155  Identities=15%  Similarity=0.209  Sum_probs=95.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-----------------------ccccceeeeceeEEEecCCce-------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-----------------------HYRATIGVDFALKVLSWDHET-------  506 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-----------------------e~~~TigiDf~~ktV~vdge~-------  506 (663)
                      -.++|+|+|...+|||||+.-+..+..+.                       -....+|.|..-+.+.+....       
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            35799999999999999998775433221                       112234555544555443320       


Q ss_pred             --eEEEEEEeCCCccchhhhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         507 --IIRLQLWDIAGQERFGNMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       507 --~vkLqIwDTpGQErfrsl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                        .--+.++|.+||.+|.....+-+.  ..|.++||+++........- +.+-.+.       .-++|++++.+|+||.+
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~-------AL~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIA-------ALNIPFFVLVTKMDLVD  317 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHH-------HhCCCeEEEEEeecccc
Confidence              124789999999999765544443  36889999998876554432 2222232       23599999999999965


Q ss_pred             CC-CCCCHHHHHHHHHHc-------------------------CCCeEEEEeCCCCcCHHHHH
Q psy4094         583 EG-IANNPAKIDEFIKEH-------------------------NFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       583 er-~~Vs~eei~qlak~~-------------------------g~i~ffEtSAKtGeNVeELF  619 (663)
                      .. ..-..++...+....                         ++.++|-+|...|++++-+-
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            31 001111122222222                         33678999999999876543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.56  E-value=0.00033  Score=72.91  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=66.2

Q ss_pred             CCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy4094         515 IAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID  593 (663)
Q Consensus       515 TpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~  593 (663)
                      .|||- +........+..+|++|+|+|+.++.+...  .++..+.        .+.|+|+|.||+|+.+..   ......
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l--------~~kp~IiVlNK~DL~~~~---~~~~~~   70 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR--------GNKPRLIVLNKADLADPA---VTKQWL   70 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH--------CCCCEEEEEEccccCCHH---HHHHHH
Confidence            35553 344555667889999999999987654332  1222211        147999999999985421   111222


Q ss_pred             HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         594 EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       594 qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ++....+ ..++.+||+++.|++++++.|.+.+...
T Consensus        71 ~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        71 KYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            2233344 3689999999999999999988877543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK13796 GTPase YqeH; Provisional

Probab=97.55  E-value=0.00041  Score=75.38  Aligned_cols=93  Identities=19%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             chhhhHHHHHhcCc-EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----H
Q psy4094         520 RFGNMTRVYYKEAV-GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID----E  594 (663)
Q Consensus       520 rfrsl~~~~~r~AD-gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~----q  594 (663)
                      .|..+.... ..++ .+++|+|+.|..     ..|+..|..+.     .+.|+|||+||+||...  .+..+.+.    .
T Consensus        58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-----~~kpviLViNK~DLl~~--~~~~~~i~~~l~~  124 (365)
T PRK13796         58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-----GNNPVLLVGNKADLLPK--SVKKNKVKNWLRQ  124 (365)
T ss_pred             HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-----CCCCEEEEEEchhhCCC--ccCHHHHHHHHHH
Confidence            455544443 4455 888999998743     34566666542     25799999999999652  23333333    3


Q ss_pred             HHHHcCCC--eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         595 FIKEHNFS--GWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       595 lak~~g~i--~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +++.+++.  .++.+||+++.|++++++.|.+.
T Consensus       125 ~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        125 EAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45555642  58999999999999999999764

>KOG0466|consensus

Probab=97.52  E-value=4.6e-05  Score=81.19  Aligned_cols=167  Identities=20%  Similarity=0.209  Sum_probs=104.3

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC---CCCCccccceeeec--ee-EEEecCC------------------------
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDF--AL-KVLSWDH------------------------  504 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~TigiDf--~~-ktV~vdg------------------------  504 (663)
                      ++..++|.-||+...||||++..+.+-   .|..+..+.+++..  .. +.+..++                        
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            345689999999999999999888652   23333344433322  11 1111111                        


Q ss_pred             --ce-----eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----cccHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q psy4094         505 --ET-----IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----AATFDAVLKWKQDLDAKVTLPDGNPIPCVL  573 (663)
Q Consensus       505 --e~-----~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----~~SFe~L~~wieeL~~~~~~~~~~~IPIIL  573 (663)
                        ..     .-++.+.|++||+.....+-.-..-.|+++|++..+.    +.+-+.+..  -++.+        -..||+
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~--------Lkhiii  184 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK--------LKHIII  184 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh--------hceEEE
Confidence              00     1357899999998654443333344688888887664    233333321  12221        156899


Q ss_pred             EEeCCCCCCCCC-CCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         574 LANKCDQPKEGI-ANNPAKIDEFIKEHNF--SGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       574 VGNKsDL~der~-~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      +-||+||..+.. ....++++.|......  .+++++||..+.||+-+.++|+..|..-.+
T Consensus       185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence            999999976441 1234556666655432  589999999999999999999998865433

>KOG0465|consensus

Probab=97.50  E-value=0.00013  Score=83.24  Aligned_cols=117  Identities=20%  Similarity=0.302  Sum_probs=92.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh------------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH------------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg------------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ...+|.++.+-.+|||||-.+.+-                  +....+..+.+++......+.+.+   ++++|+|||||
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---~~iNiIDTPGH  114 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---YRINIIDTPGH  114 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc---ceeEEecCCCc
Confidence            456899999999999999998761                  111234455666666666666663   68999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      .+|.-...+.++--|++|+|+|...+-.-+....|.+.-+        .++|-|...||.|.....
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--------y~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--------YNVPRICFINKMDRMGAS  172 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--------cCCCeEEEEehhhhcCCC
Confidence            9999999999999999999999998877778788876544        469999999999975543

>KOG2486|consensus

Probab=97.49  E-value=0.00016  Score=76.32  Aligned_cols=157  Identities=18%  Similarity=0.227  Sum_probs=91.0

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCcccc-ceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhh
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRA-TIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGN  523 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~-TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrs  523 (663)
                      .+....++++|..+||||+|++.++.......... ..|..-....+.+.    -.+.+.|.+|          ..+|..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~----~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG----KSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc----ceEEEEecCCcccccCCccCcchHhH
Confidence            45667999999999999999999986443322222 22211111222222    2588999998          235666


Q ss_pred             hHHHHHhcCc---EEEEEEeCCCccc-HHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC------CCCHHH-
Q psy4094         524 MTRVYYKEAV---GAFIVFDVTRAAT-FDA-VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI------ANNPAK-  591 (663)
Q Consensus       524 l~~~~~r~AD---gaILVyDVTd~~S-Fe~-L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~------~Vs~ee-  591 (663)
                      +...|+.+-+   -+++++|++-+-- .+. ...|+.          ..++|+.+|.||||......      ...... 
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g----------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~  278 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG----------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN  278 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh----------hcCCCeEEeeehhhhhhhccccccCccccceee
Confidence            7777775544   3445556553221 111 123332          35699999999999643220      011110 


Q ss_pred             HHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         592 IDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       592 i~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      ...+....  ...+++.+|+.++.|+++|+-.|.+.
T Consensus       279 f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  279 FQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             hhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence            11111110  11468899999999999998877664

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.47  E-value=0.00061  Score=84.04  Aligned_cols=113  Identities=23%  Similarity=0.240  Sum_probs=69.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc------cccceeeeceeEEEecCCceeEEEEEEeCCC----cc----chhhhH
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH------YRATIGVDFALKVLSWDHETIIRLQLWDIAG----QE----RFGNMT  525 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee------~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----QE----rfrsl~  525 (663)
                      =.+|||++|+|||||+.+. +-.|.-.      ...+++-.. .....+.++    ..++||+|    |+    .....|
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~----avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDE----AVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCC----EEEEcCCCccccCCCcccccHHHH
Confidence            3789999999999999876 4334321      111222111 122222332    56999999    22    233445


Q ss_pred             HHHH---------hcCcEEEEEEeCCCccc---------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         526 RVYY---------KEAVGAFIVFDVTRAAT---------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       526 ~~~~---------r~ADgaILVyDVTd~~S---------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      ..++         +-.||+|+|+|+.+--.         -..++..+.++...+    +-.+||-||.+|+|+..
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l----g~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL----GARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh----CCCCCEEEEEecchhhc
Confidence            5554         23799999999986321         123445556666543    34699999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0459|consensus

Probab=97.41  E-value=9.1e-05  Score=81.32  Aligned_cols=160  Identities=16%  Similarity=0.176  Sum_probs=99.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWD  503 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vd  503 (663)
                      +...++++++|+..+||||+-.+++..                               ...++....-+++...-.+...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            355689999999999999998776521                               0111112111222222222222


Q ss_pred             CceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         504 HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       504 ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                         .-++.|.|.+||..|...+..-..+||..+||+++...+   -|++-.+-.+....+.   ...-..+|++.||.|-
T Consensus       156 ---~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak---t~gv~~lVv~vNKMdd  229 (501)
T KOG0459|consen  156 ---NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDD  229 (501)
T ss_pred             ---ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH---hhccceEEEEEEeccC
Confidence               247999999999999888777788899999999885322   2443322222211110   0112467999999997


Q ss_pred             CCCC-----CCCCHHHHHHHHHHcCC-----CeEEEEeCCCCcCHHHHHH
Q psy4094         581 PKEG-----IANNPAKIDEFIKEHNF-----SGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       581 ~der-----~~Vs~eei~qlak~~g~-----i~ffEtSAKtGeNVeELFe  620 (663)
                      +...     +....+.+..|++..|+     ..|++||..+|.|+.+...
T Consensus       230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            6433     22334455566665554     4599999999999988654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.38  E-value=0.0012  Score=70.91  Aligned_cols=95  Identities=16%  Similarity=0.108  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCccchh----hhHHHHH--------hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYY--------KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA  575 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~--------r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG  575 (663)
                      +.+.|+||+|.....    .....+.        ...+..+||.|++..  .+.+.. ...+...+       -+.-+|.
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~-------~~~giIl  266 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV-------GLTGIIL  266 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC-------CCCEEEE
Confidence            679999999964321    1122222        246788999999853  233332 23332211       2346899


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHH
Q psy4094         576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe  620 (663)
                      ||.|....     .-.+..++..++. ++.+++  +|++++++-.
T Consensus       267 TKlD~t~~-----~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        267 TKLDGTAK-----GGVVFAIADELGI-PIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             ECCCCCCC-----ccHHHHHHHHHCC-CEEEEe--CCCChhhCcc
Confidence            99995432     2345556666774 788887  7888877643

>cd01858 NGP_1 NGP-1

Probab=97.38  E-value=0.00044  Score=65.34  Aligned_cols=54  Identities=20%  Similarity=0.171  Sum_probs=36.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      .+.|+++|.+|||||||+|++.+.... ....+..+...  ..+..+.    .+.++||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~----~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK----RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC----CEEEEECcC
Confidence            368999999999999999999985442 22233333222  2233333    267999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0463|consensus

Probab=97.37  E-value=0.00033  Score=76.45  Aligned_cols=164  Identities=14%  Similarity=0.195  Sum_probs=90.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC------------------Cccccceeeece-----eEEEecC----------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFA-----LKVLSWD----------  503 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~-----~ktV~vd----------  503 (663)
                      ..++|+|+|...+|||||+.-+..+..+                  .-....+|.|+.     -..+.-.          
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            3479999999999999999665422211                  112222332221     1111110          


Q ss_pred             ---CceeEEEEEEeCCCccchhhhH--HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         504 ---HETIIRLQLWDIAGQERFGNMT--RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       504 ---ge~~vkLqIwDTpGQErfrsl~--~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                         ....-.+.++|.+||++|-...  .+--+..|..+|++-.+-.. .-...+.+.       ..-.-.+|+.||.+|+
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLg-------LALaL~VPVfvVVTKI  283 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLG-------LALALHVPVFVVVTKI  283 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhh-------hhhhhcCcEEEEEEee
Confidence               0111347899999999984322  22224468888888665321 111111111       1112348999999999


Q ss_pred             CCCCCCCCCCHHHHH---HHHHHcCC-------------------------CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         579 DQPKEGIANNPAKID---EFIKEHNF-------------------------SGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       579 DL~der~~Vs~eei~---qlak~~g~-------------------------i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      |+....  +.++.++   .+.+..||                         |++|.+|-.+|.|+.-| ...+..+..++
T Consensus       284 DMCPAN--iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~  360 (641)
T KOG0463|consen  284 DMCPAN--ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRR  360 (641)
T ss_pred             ccCcHH--HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCccc
Confidence            987754  2333222   23333222                         57899999999998654 34444444444


Q ss_pred             h
Q psy4094         631 K  631 (663)
Q Consensus       631 k  631 (663)
                      +
T Consensus       361 ~  361 (641)
T KOG0463|consen  361 Q  361 (641)
T ss_pred             c
Confidence            3

>KOG1487|consensus

Probab=97.36  E-value=0.00054  Score=72.01  Aligned_cols=163  Identities=17%  Similarity=0.225  Sum_probs=95.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------hhhHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------GNMTRVYYK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------rsl~~~~~r  530 (663)
                      .+|.++|-+.||||||+..+.+..-.. .|.-+ +.....-.+.+.+   .++++.|.||.-+-       ........+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeft-tl~~vpG~~~y~g---aKiqlldlpgiiegakdgkgrg~qviavar  135 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFT-TLTTVPGVIRYKG---AKIQLLDLPGIIEGAKDGKGRGKQVIAVAR  135 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccce-eEEEecceEeccc---cceeeecCcchhcccccCCCCccEEEEEee
Confidence            489999999999999999887643221 12111 1111111222333   47999999984321       122333467


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHH-----------------------------------------HHHHHhhc--------
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKW-----------------------------------------KQDLDAKV--------  561 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~w-----------------------------------------ieeL~~~~--------  561 (663)
                      .|+.+++|.|+..+-+...+.+.                                         +.+.+.+-        
T Consensus       136 tcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D  215 (358)
T KOG1487|consen  136 TCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD  215 (358)
T ss_pred             cccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence            89999999999877665443211                                         01111000        


Q ss_pred             -------CCCC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         562 -------TLPD--GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       562 -------~~~~--~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                             ....  ..-+|.|.+.||+|-.      ..++..   -.+-....+.+||..++|++++++.+-..+.-.+..
T Consensus       216 aT~DdLIdvVegnr~yVp~iyvLNkIdsI------SiEELd---ii~~iphavpISA~~~wn~d~lL~~mweyL~LvriY  286 (358)
T KOG1487|consen  216 ATADDLIDVVEGNRIYVPCIYVLNKIDSI------SIEELD---IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIY  286 (358)
T ss_pred             cchhhhhhhhccCceeeeeeeeeccccee------eeeccc---eeeeccceeecccccccchHHHHHHHhhcchheEEe
Confidence                   0000  0147888999999842      222211   123334578999999999999999888766555544


Q ss_pred             hh
Q psy4094         633 QA  634 (663)
Q Consensus       633 ~~  634 (663)
                      ++
T Consensus       287 tk  288 (358)
T KOG1487|consen  287 TK  288 (358)
T ss_pred             cC
Confidence            43

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.34  E-value=0.00076  Score=70.71  Aligned_cols=101  Identities=16%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             CCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy4094         515 IAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID  593 (663)
Q Consensus       515 TpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~  593 (663)
                      .|||- +-.......+..||++|+|+|+.++.+.+.  .++..+.        .+.|+|+|.||+||.+..   ..+...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~--------~~kp~iiVlNK~DL~~~~---~~~~~~   73 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII--------GNKPRLLILNKSDLADPE---VTKKWI   73 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh--------CCCCEEEEEEchhcCCHH---HHHHHH
Confidence            45653 333445667889999999999987654332  1222222        147999999999985421   112222


Q ss_pred             HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         594 EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       594 qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      .+....+ ..++.+||+++.|++++++.|...+...
T Consensus        74 ~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         74 EYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            2333334 3689999999999999999988876544

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.34  E-value=0.0007  Score=70.53  Aligned_cols=55  Identities=18%  Similarity=0.300  Sum_probs=39.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      .++|+|+|.+|||||||+|++.+.... ....++.+  .....+.+..    .+.||||||.
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~----~~~l~DtPG~  173 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD----GLELLDTPGI  173 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC----CEEEEECCCc
Confidence            489999999999999999999976543 22233333  3334444443    3789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.33  E-value=0.00045  Score=67.64  Aligned_cols=55  Identities=18%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      ..++|+|+|.++||||||+|++.+... .....++++..+  ..+.++.    .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~----~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK----KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC----CEEEEECcC
Confidence            347999999999999999999998554 333444444333  3333333    378999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK14974 cell division protein FtsY; Provisional

Probab=97.32  E-value=0.00082  Score=72.70  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCccchh----hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|.....    .....+.  .+.|.++||.|++...   ........+...+       -.--+|.||.|..
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~-------~~~giIlTKlD~~  292 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV-------GIDGVILTKVDAD  292 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC-------CCCEEEEeeecCC
Confidence            468999999965321    1122222  3578999999997643   2222223332211       1236889999985


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~  621 (663)
                      ...     -.+..++...+. ++.+++  +|++++++...
T Consensus       293 ~~~-----G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        293 AKG-----GAALSIAYVIGK-PILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             CCc-----cHHHHHHHHHCc-CEEEEe--CCCChhhcccC
Confidence            532     234445555664 777776  78889887644

>KOG0469|consensus

Probab=97.31  E-value=0.00049  Score=77.29  Aligned_cols=134  Identities=18%  Similarity=0.247  Sum_probs=90.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHh------------CCCC----CccccceeeeceeEEEec--------------CC
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVH------------QFFS----PHYRATIGVDFALKVLSW--------------DH  504 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg------------~~fs----ee~~~TigiDf~~ktV~v--------------dg  504 (663)
                      .....++-||.+...|||||...++.            ..|.    .+..+.+++......+.+              ++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            34556899999999999999999872            1121    122333443322222211              12


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      + ...++++|.|||.+|.+.....++-.|++++|+|..++--.+.-..+.+.+.+        ++.-+||.||.|..--.
T Consensus        96 ~-~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRAlLE  166 (842)
T KOG0469|consen   96 N-GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRALLE  166 (842)
T ss_pred             c-ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHHHHh
Confidence            2 47799999999999999999999999999999999987666655555555553        35557999999953222


Q ss_pred             CCCCHHHHHHHHH
Q psy4094         585 IANNPAKIDEFIK  597 (663)
Q Consensus       585 ~~Vs~eei~qlak  597 (663)
                      -+...++..+.++
T Consensus       167 Lq~~~EeLyqtf~  179 (842)
T KOG0469|consen  167 LQLSQEELYQTFQ  179 (842)
T ss_pred             hcCCHHHHHHHHH
Confidence            2455666555443

>PRK01889 GTPase RsgA; Reviewed

Probab=97.24  E-value=0.0017  Score=70.46  Aligned_cols=85  Identities=18%  Similarity=0.076  Sum_probs=61.1

Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      ...++|.+++|+++...-....+..++..+..       .+++.|||.||+||.+..    .+....+.......++|.+
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~-------~~i~piIVLNK~DL~~~~----~~~~~~~~~~~~g~~Vi~v  177 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE-------SGAEPVIVLTKADLCEDA----EEKIAEVEALAPGVPVLAV  177 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH-------cCCCEEEEEEChhcCCCH----HHHHHHHHHhCCCCcEEEE
Confidence            36789999999999755556677777766663       457889999999996531    1222233332222478999


Q ss_pred             eCCCCcCHHHHHHHHH
Q psy4094         608 SAKDNINIDDAAKTLV  623 (663)
Q Consensus       608 SAKtGeNVeELFe~II  623 (663)
                      |++++.|+++|..+|.
T Consensus       178 Sa~~g~gl~~L~~~L~  193 (356)
T PRK01889        178 SALDGEGLDVLAAWLS  193 (356)
T ss_pred             ECCCCccHHHHHHHhh
Confidence            9999999999888874

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.22  E-value=0.00077  Score=70.67  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=40.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      .++|+|+|.+|||||||+|++.+... .....++++...  ..+.++.    .+.+|||||-.
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~----~~~l~DtPGi~  177 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK----GLELLDTPGIL  177 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC----cEEEEECCCcC
Confidence            47999999999999999999998654 333344444333  3444443    37899999964

>cd01855 YqeH YqeH

Probab=97.21  E-value=0.00058  Score=66.40  Aligned_cols=53  Identities=19%  Similarity=0.312  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC---------CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF---------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f---------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      ..|+|+|.+|||||||+|.+++...         .....++.+.+  ...+.++.    .+.||||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~----~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN----GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC----CCEEEeCcC
Confidence            4799999999999999999997543         22233333333  33333332    368999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.16  E-value=0.0048  Score=64.71  Aligned_cols=98  Identities=19%  Similarity=0.087  Sum_probs=58.8

Q ss_pred             EEEEEEeCCCccchhhh----HHHHH--h------cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094         508 IRLQLWDIAGQERFGNM----TRVYY--K------EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA  575 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl----~~~~~--r------~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG  575 (663)
                      +.+.|+||+|.......    ...+.  -      .+|.++||+|++..  .+.+ .+...+.+.+       -+.-+|.
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~-------~~~g~Il  224 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV-------GLTGIIL  224 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC-------CCCEEEE
Confidence            67899999996533221    11111  1      38999999999743  3333 2333433221       1346899


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Q psy4094         576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLV  623 (663)
Q Consensus       576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~II  623 (663)
                      ||.|.....     -.+..++...+ .++.+++  +|++++++-..-.
T Consensus       225 TKlDe~~~~-----G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~~~~  264 (272)
T TIGR00064       225 TKLDGTAKG-----GIILSIAYELK-LPIKFIG--VGEKIDDLAPFDA  264 (272)
T ss_pred             EccCCCCCc-----cHHHHHHHHHC-cCEEEEe--CCCChHhCccCCH
Confidence            999975432     34455556667 4777777  7888877654433

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.16  E-value=0.0019  Score=61.94  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCccchhhhHHHH--------HhcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVY--------YKEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~--------~r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                      ..+.++|++|-..-..+...+        .-..+++++++|..+... +.+...+..++..          .=+||.||+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----------ad~ivlnk~  156 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----------ADRILLNKT  156 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----------CCEEEEecc
Confidence            457889999975433333322        224788999999764322 1122334444442          116799999


Q ss_pred             CC
Q psy4094         579 DQ  580 (663)
Q Consensus       579 DL  580 (663)
                      |+
T Consensus       157 dl  158 (158)
T cd03112         157 DL  158 (158)
T ss_pred             cC
Confidence            96

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00092 GTP-binding protein YchF

Probab=97.13  E-value=0.0018  Score=70.99  Aligned_cols=84  Identities=12%  Similarity=-0.016  Sum_probs=56.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCc--------------eeEEEEEEeCCCccch--
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHE--------------TIIRLQLWDIAGQERF--  521 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge--------------~~vkLqIwDTpGQErf--  521 (663)
                      +++.|||.++||||||++.+.+... .....+..+++-..-.+.+.+.              ....+.+.|+||-..-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            6999999999999999999988765 4333344333444444444331              1246899999995321  


Q ss_pred             --hh---hHHHHHhcCcEEEEEEeCC
Q psy4094         522 --GN---MTRVYYKEAVGAFIVFDVT  542 (663)
Q Consensus       522 --rs---l~~~~~r~ADgaILVyDVT  542 (663)
                        ..   ..-..++++|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              12   2333578899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0448|consensus

Probab=97.12  E-value=0.0072  Score=70.26  Aligned_cols=67  Identities=15%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcc---chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         509 RLQLWDIAGQE---RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       509 kLqIwDTpGQE---rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      .+.++|.||-.   ....+...++.++|++|||....+.-..... .++....       ....-|.++-||+|....
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs-------~~KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVS-------EEKPNIFILNNKWDASAS  276 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhh-------ccCCcEEEEechhhhhcc
Confidence            36788999853   5677888899999999999988764443332 2222221       113456788889998654

>KOG4273|consensus

Probab=97.12  E-value=0.0021  Score=67.31  Aligned_cols=163  Identities=19%  Similarity=0.245  Sum_probs=98.9

Q ss_pred             EEEEEeCCCC--CHHHHHHHHHhCCCCCccccceeeeceeEEEecCCc-eeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         460 KILVIGELGA--GKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE-TIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GV--GKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge-~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      -++|+|-.||  ||-+|+.++....|..+........|.--+|.-.-. -.+.+.|.-++. +.|-. .........+++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lp-n~~~a~pl~a~v   83 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLP-NAEIAEPLQAFV   83 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccC-CcccccceeeEE
Confidence            5889999999  999999999877665444433333333222211100 013344443321 11110 111123356889


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------------------C-----
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--------------------------I-----  585 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--------------------------~-----  585 (663)
                      +|||++....+..+..|+..-.    . +..++ ++.+|||.|....+                          +     
T Consensus        84 mvfdlse~s~l~alqdwl~htd----i-nsfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset  157 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTD----I-NSFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET  157 (418)
T ss_pred             EEEeccchhhhHHHHhhccccc----c-ccchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence            9999999999999999975221    1 11223 57889999964322                          0     


Q ss_pred             ------------CCCHHHHHHHHHHcCCCeEEEEeCCCC------------cCHHHHHHHHHHHHHhhhh
Q psy4094         586 ------------ANNPAKIDEFIKEHNFSGWFETSAKDN------------INIDDAAKTLVQKILENDK  631 (663)
Q Consensus       586 ------------~Vs~eei~qlak~~g~i~ffEtSAKtG------------eNVeELFe~IIr~Ile~~k  631 (663)
                                  ......+.+||..+|+ .|++.+|.+.            .||+.+|..+-.++...+.
T Consensus       158 egssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi  226 (418)
T KOG4273|consen  158 EGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI  226 (418)
T ss_pred             ccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence                        0123345678888885 7999998643            4899999988877655443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.09  E-value=0.005  Score=68.78  Aligned_cols=114  Identities=13%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh------CCC---CC-cc-----------ccceeeeceeEEEecC------------Cc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH------QFF---SP-HY-----------RATIGVDFALKVLSWD------------HE  505 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg------~~f---se-e~-----------~~TigiDf~~ktV~vd------------ge  505 (663)
                      .-|+|+|..||||||++..+..      ...   .. .|           ....++.++......+            ..
T Consensus       101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~  180 (429)
T TIGR01425       101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK  180 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence            5799999999999999988862      110   00 11           1112222221100000            00


Q ss_pred             eeEEEEEEeCCCccchhh----hHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         506 TIIRLQLWDIAGQERFGN----MTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrs----l~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      ..+.+.|+||+|......    ....+  ..+.+-++||.|.+-+..-   ......|.+.+       -+--+|.||.|
T Consensus       181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~-------~~~g~IlTKlD  250 (429)
T TIGR01425       181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV-------DVGSVIITKLD  250 (429)
T ss_pred             CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc-------CCcEEEEECcc
Confidence            136789999999543321    11222  2246789999998754322   22334443221       24568899999


Q ss_pred             CCC
Q psy4094         580 QPK  582 (663)
Q Consensus       580 L~d  582 (663)
                      ...
T Consensus       251 ~~a  253 (429)
T TIGR01425       251 GHA  253 (429)
T ss_pred             CCC
Confidence            743

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0447|consensus

Probab=97.02  E-value=0.0081  Score=68.43  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=59.8

Q ss_pred             EEecCCceeEEEEEEeCCCcc-------------chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCC
Q psy4094         499 VLSWDHETIIRLQLWDIAGQE-------------RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD  565 (663)
Q Consensus       499 tV~vdge~~vkLqIwDTpGQE-------------rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~  565 (663)
                      .+.+.|-..-++.+.|.||..             ....+...|+.+.+++|||+-=.   |.+.-+.....|-..|   .
T Consensus       403 sltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~---D  476 (980)
T KOG0447|consen  403 SLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQM---D  476 (980)
T ss_pred             EEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhc---C
Confidence            344443333578999999832             23467888999999999998432   2222222333333322   3


Q ss_pred             CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094         566 GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE  598 (663)
Q Consensus       566 ~~~IPIILVGNKsDL~der~~Vs~eei~qlak~  598 (663)
                      ..+...|+|.+|.|+.+.. ......+++++..
T Consensus       477 P~GrRTIfVLTKVDlAEkn-lA~PdRI~kIleG  508 (980)
T KOG0447|consen  477 PHGRRTIFVLTKVDLAEKN-VASPSRIQQIIEG  508 (980)
T ss_pred             CCCCeeEEEEeecchhhhc-cCCHHHHHHHHhc
Confidence            4567889999999998876 4566777777654

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.01  E-value=0.0072  Score=61.40  Aligned_cols=85  Identities=13%  Similarity=0.028  Sum_probs=53.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC--CCCCc---cccceeeeceeEEEecCCceeEEEEEEeCCCccch------hhhH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ--FFSPH---YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF------GNMT  525 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~--~fsee---~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf------rsl~  525 (663)
                      ...-|.|+|..++|||+|+|++++.  .|...   ..-|.|+-.....+....  ...+.++||+|....      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~--~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGK--EHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCC--cceEEEEecCCcCccccCchhhhhH
Confidence            4467999999999999999999987  55422   233444433333332212  357999999996432      1222


Q ss_pred             HHHHhc--CcEEEEEEeCCC
Q psy4094         526 RVYYKE--AVGAFIVFDVTR  543 (663)
Q Consensus       526 ~~~~r~--ADgaILVyDVTd  543 (663)
                      ...+..  ++++|+..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            223333  788887766654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.92  E-value=0.022  Score=54.76  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC
Q psy4094         507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA  586 (663)
Q Consensus       507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~  586 (663)
                      .+.+.|+|+++....  .....+..+|.+|+++..+ ..++..+..+++.+..       .++++.+|.|++|....   
T Consensus        92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~vV~N~~~~~~~---  158 (179)
T cd03110          92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRH-------FGIPVGVVINKYDLNDE---  158 (179)
T ss_pred             CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHH-------cCCCEEEEEeCCCCCcc---
Confidence            468999999976422  3445678899999999887 4577777777776663       24678999999996432   


Q ss_pred             CCHHHHHHHHHHcCCCeEE
Q psy4094         587 NNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       587 Vs~eei~qlak~~g~i~ff  605 (663)
                       ..+++.+++..++. +++
T Consensus       159 -~~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         159 -IAEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             -hHHHHHHHHHHcCC-CeE
Confidence             34667788888875 444

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK13695 putative NTPase; Provisional

Probab=96.91  E-value=0.012  Score=56.75  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=43.4

Q ss_pred             HHhcCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      .+.++++  +++|=-  ...+.+ ..+++.+...+    ..+.|+|++.||...        ...+..+....++ .+++
T Consensus        93 ~l~~~~~--lllDE~--~~~e~~~~~~~~~l~~~~----~~~~~~i~v~h~~~~--------~~~~~~i~~~~~~-~i~~  155 (174)
T PRK13695         93 ALEEADV--IIIDEI--GKMELKSPKFVKAVEEVL----DSEKPVIATLHRRSV--------HPFVQEIKSRPGG-RVYE  155 (174)
T ss_pred             ccCCCCE--EEEECC--CcchhhhHHHHHHHHHHH----hCCCeEEEEECchhh--------HHHHHHHhccCCc-EEEE
Confidence            3445666  566621  111111 33445555432    245899999998532        1233444444453 5677


Q ss_pred             EeCCCCcCHHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~I  626 (663)
                      +   +.+|=++++..|++.+
T Consensus       156 ~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        156 L---TPENRDSLPFEILNRL  172 (174)
T ss_pred             E---cchhhhhHHHHHHHHH
Confidence            6   4556678888888765

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.89  E-value=0.0022  Score=60.57  Aligned_cols=54  Identities=20%  Similarity=0.272  Sum_probs=37.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      ..+|+|+|.+|||||||+|.+.+... .....+..+.+...  +.++.    .+.++||||
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~~----~~~liDtPG  154 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLDN----KIKLLDTPG  154 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEecC----CEEEEECCC
Confidence            36899999999999999999998653 22333444433332  22322    378999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.88  E-value=0.00097  Score=65.35  Aligned_cols=58  Identities=16%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      -++|+|.+|||||||+|.+++....      .....+-........+.+++.    ..|+||||-..+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g----~~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG----GYIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS----EEEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC----cEEEECCCCCcc
Confidence            6899999999999999999975321      111111111122334444443    469999997655

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.86  E-value=0.0019  Score=69.32  Aligned_cols=56  Identities=21%  Similarity=0.349  Sum_probs=41.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      .++++|||-++||||||||++++.... ....+  |..-....+.++..    +.++||||--
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~----i~LlDtPGii  188 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG----IYLLDTPGII  188 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC----eEEecCCCcC
Confidence            478999999999999999999986552 23334  44445555666554    8899999953

>KOG1491|consensus

Probab=96.79  E-value=0.0053  Score=66.68  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC--------------ceeEEEEEEeCCCccc--
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH--------------ETIIRLQLWDIAGQER--  520 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg--------------e~~vkLqIwDTpGQEr--  520 (663)
                      ..++|.|||.++||||||+|.+..........+..++|-..-.+.+.+              .-...|+++|++|--+  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            347999999999999999999998777766666666665554554433              2236799999998432  


Q ss_pred             --hhhhHHHH---HhcCcEEEEEEeCC
Q psy4094         521 --FGNMTRVY---YKEAVGAFIVFDVT  542 (663)
Q Consensus       521 --frsl~~~~---~r~ADgaILVyDVT  542 (663)
                        -..+...|   +|.+|+++.|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence              23444444   57899999988765

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.74  E-value=0.021  Score=65.58  Aligned_cols=137  Identities=18%  Similarity=0.242  Sum_probs=73.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-----------C-ccc-----------cceeeeceeEEEec--------CCcee
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-----------P-HYR-----------ATIGVDFALKVLSW--------DHETI  507 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-----------e-e~~-----------~TigiDf~~ktV~v--------dge~~  507 (663)
                      -.|+|+|..|+||||++..|......           . .|.           ...++.+.  ...-        .....
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD  428 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence            47899999999999999887642100           0 011           00111111  1000        00013


Q ss_pred             EEEEEEeCCCccchhhh-HHH--HHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNM-TRV--YYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl-~~~--~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      +.+.|+||+|....... ...  .+.  .....+||++.+.  .+..+...+..+...        .+.-||.||.|...
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~--------~~~gvILTKlDEt~  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA--------KPQGVVLTKLDETG  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh--------CCeEEEEecCcCcc
Confidence            67899999996432211 100  111  1235677777763  455555555444421        35679999999743


Q ss_pred             CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                           ..-.+..++..++. ++.+++  +|.+|
T Consensus       499 -----~lG~aLsv~~~~~L-PI~yvt--~GQ~V  523 (559)
T PRK12727        499 -----RFGSALSVVVDHQM-PITWVT--DGQRV  523 (559)
T ss_pred             -----chhHHHHHHHHhCC-CEEEEe--CCCCc
Confidence                 23456666777775 666665  35555

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.72  E-value=0.025  Score=54.14  Aligned_cols=79  Identities=10%  Similarity=0.096  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCccchh----hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+|++|...+.    .....+.  ...+.+++|+|.....   ....++..+...+      + ..-+|.||.|..
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~------~-~~~viltk~D~~  152 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL------G-ITGVILTKLDGD  152 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence            457899999974221    1111122  2489999999986433   2234444444321      1 245777999975


Q ss_pred             CCCCCCCHHHHHHHHHHcCC
Q psy4094         582 KEGIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~  601 (663)
                      ...     ..+..++...+.
T Consensus       153 ~~~-----g~~~~~~~~~~~  167 (173)
T cd03115         153 ARG-----GAALSIRAVTGK  167 (173)
T ss_pred             CCc-----chhhhhHHHHCc
Confidence            533     223335555553

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.029  Score=64.34  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .....|-|+|+|++|+||||||+.++....    ..|+..-....++. .+. .-+|.++.++.  +... +.....=||
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvv-sgK-~RRiTflEcp~--Dl~~-miDvaKIaD  135 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVV-SGK-TRRITFLECPS--DLHQ-MIDVAKIAD  135 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEe-ecc-eeEEEEEeChH--HHHH-HHhHHHhhh
Confidence            334568899999999999999998875311    11111111222222 233 56789999882  2222 223445699


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCCCCCCHHHHH-----HHHHH-cCCCeEEE
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPKEGIANNPAKID-----EFIKE-HNFSGWFE  606 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~der~~Vs~eei~-----qlak~-~g~i~ffE  606 (663)
                      .+||++|..-+-..+.+ .++..+..       .++ .|+-|++..||....  .....+.     .|+.. +..+.+|+
T Consensus       136 LVlLlIdgnfGfEMETm-EFLnil~~-------HGmPrvlgV~ThlDlfk~~--stLr~~KKrlkhRfWtEiyqGaKlFy  205 (1077)
T COG5192         136 LVLLLIDGNFGFEMETM-EFLNILIS-------HGMPRVLGVVTHLDLFKNP--STLRSIKKRLKHRFWTEIYQGAKLFY  205 (1077)
T ss_pred             eeEEEeccccCceehHH-HHHHHHhh-------cCCCceEEEEeecccccCh--HHHHHHHHHHhhhHHHHHcCCceEEE
Confidence            99999998865444443 33333332       233 356789999986533  2222222     23332 33357898


Q ss_pred             EeCCCC
Q psy4094         607 TSAKDN  612 (663)
Q Consensus       607 tSAKtG  612 (663)
                      +|...+
T Consensus       206 lsgV~n  211 (1077)
T COG5192         206 LSGVEN  211 (1077)
T ss_pred             eccccc
Confidence            886654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.60  E-value=0.0087  Score=67.02  Aligned_cols=85  Identities=11%  Similarity=0.063  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccchhh-h---HHH--HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGN-M---TRV--YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrs-l---~~~--~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL  580 (663)
                      ..+.|+||+|...... +   ...  .+..+|.++||+|.+...   .+......+...        ++ .-+|.||.|.
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~--------l~i~gvIlTKlD~  244 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA--------VGIGGIIITKLDG  244 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc--------CCCCEEEEecccC
Confidence            3689999999654321 1   111  134689999999987642   222333444321        22 2578899996


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         581 PKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       581 ~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ...     .-.+..++...+. ++.+++.
T Consensus       245 ~a~-----~G~~ls~~~~~~~-Pi~fig~  267 (437)
T PRK00771        245 TAK-----GGGALSAVAETGA-PIKFIGT  267 (437)
T ss_pred             CCc-----ccHHHHHHHHHCc-CEEEEec
Confidence            432     2345556666664 5555544

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.56  E-value=0.014  Score=55.78  Aligned_cols=57  Identities=14%  Similarity=0.133  Sum_probs=36.0

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      +.+.|+||+|....   ...++..||-+|+|....-.+.+.-++ + ..+.          ..=+||.||+|
T Consensus        92 ~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k-~-~~~~----------~~~~~~~~k~~  148 (148)
T cd03114          92 FDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK-A-GIME----------IADIVVVNKAD  148 (148)
T ss_pred             CCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh-h-hHhh----------hcCEEEEeCCC
Confidence            67899999996422   234888999999988766222222221 1 2222          22379999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=96.53  E-value=0.0038  Score=67.81  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCC-ccccc-----eeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSP-HYRAT-----IGVDFALKVLSWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fse-e~~~T-----igiDf~~ktV~vdge~~vkLqIwDTpGQErfr  522 (663)
                      ++|+|.+|||||||+|+|++..... ...+.     -........+.+.++    ..|+||||...|.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~----~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG----GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC----CEEEECCCCCccc
Confidence            7899999999999999999753321 11110     001112223333332    2499999987664

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.51  E-value=0.015  Score=51.01  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=52.3

Q ss_pred             EEEEe-CCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         461 ILVIG-ELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       461 IVVLG-d~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      |+|+| .+|+||||+...+...-. ....+       .-.++.+..  +.+.|+|+++....  .....+..+|.+|++.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~-------vl~~d~d~~--~d~viiD~p~~~~~--~~~~~l~~ad~viv~~   69 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALA-RRGKR-------VLLIDLDPQ--YDYIIIDTPPSLGL--LTRNALAAADLVLIPV   69 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHH-hCCCc-------EEEEeCCCC--CCEEEEeCcCCCCH--HHHHHHHHCCEEEEec
Confidence            56666 679999999877654211 11111       222222322  56899999987533  2336778899999999


Q ss_pred             eCCCcccHHHHHHHHH
Q psy4094         540 DVTRAATFDAVLKWKQ  555 (663)
Q Consensus       540 DVTd~~SFe~L~~wie  555 (663)
                      +.+ ..++..+..+++
T Consensus        70 ~~~-~~s~~~~~~~~~   84 (104)
T cd02042          70 QPS-PLDLDGLEKLLE   84 (104)
T ss_pred             cCC-HHHHHHHHHHHH
Confidence            764 566777776665

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG3859|consensus

Probab=96.48  E-value=0.01  Score=63.26  Aligned_cols=113  Identities=17%  Similarity=0.353  Sum_probs=69.0

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEEecC-CceeEEEEEEeCCCc-------cchhhh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVLSWD-HETIIRLQLWDIAGQ-------ERFGNM  524 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQ-------Erfrsl  524 (663)
                      ..|+|+.||..|.||||||..+.+-.|..+    ..+++.  ....+..+. .+..++|.|.||.|-       +.|..+
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~--L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVK--LQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCce--eecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            469999999999999999999998777543    233443  333333332 223588999999982       122221


Q ss_pred             H-------HHH-------------Hh--cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         525 T-------RVY-------------YK--EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       525 ~-------~~~-------------~r--~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      .       ..|             |+  ..++|++.+..+ +.++..+. ..+..|.        ..+-||-|+-|.|-
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld--------skVNIIPvIAKaDt  188 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD--------SKVNIIPVIAKADT  188 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh--------hhhhhHHHHHHhhh
Confidence            1       111             22  356788777776 45555543 2334444        23556666678774

>PRK10867 signal recognition particle protein; Provisional

Probab=96.46  E-value=0.025  Score=63.32  Aligned_cols=86  Identities=9%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCccchh----hhHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|.....    .....+  +-..+.+++|.|.+..   +.+..+...+...+      ++ .-+|.||.|..
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~i-~giIlTKlD~~  253 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------GL-TGVILTKLDGD  253 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------CC-CEEEEeCccCc
Confidence            568999999953221    111111  1256788999998643   34445555555321      11 24677999964


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ...     -.+..++...+. ++.++..
T Consensus       254 ~rg-----G~alsi~~~~~~-PI~fig~  275 (433)
T PRK10867        254 ARG-----GAALSIRAVTGK-PIKFIGT  275 (433)
T ss_pred             ccc-----cHHHHHHHHHCc-CEEEEeC
Confidence            322     236667777774 6666554

>TIGR00959 ffh signal recognition particle protein

Probab=96.41  E-value=0.012  Score=65.76  Aligned_cols=92  Identities=12%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCccchhh-hH---HHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFGN-MT---RVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfrs-l~---~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|...... +.   ..+  .-+.+.++||+|.+..   +.+..+...+...+.       ..-+|.||.|..
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~~  252 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDGD  252 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence            5689999999532211 11   111  2357899999998743   445555555553321       124779999964


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ...     -.+..++...+. ++.++..  |+++++
T Consensus       253 ~~~-----G~~lsi~~~~~~-PI~fi~~--Ge~i~d  280 (428)
T TIGR00959       253 ARG-----GAALSVRSVTGK-PIKFIGV--GEKIDD  280 (428)
T ss_pred             ccc-----cHHHHHHHHHCc-CEEEEeC--CCChhh
Confidence            322     236677777774 6666654  444443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.35  E-value=0.048  Score=60.11  Aligned_cols=147  Identities=14%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC---Cccccceeeece----------------eEEEecCC----------ceeEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS---PHYRATIGVDFA----------------LKVLSWDH----------ETIIR  509 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~TigiDf~----------------~ktV~vdg----------e~~vk  509 (663)
                      -.|+|+|+.||||||++..+......   ......++.|.+                .....+..          -....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            37899999999999999998753110   011111111111                00111110          01256


Q ss_pred             EEEEeCCCccchhh----hHHHHHhc---CcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCC
Q psy4094         510 LQLWDIAGQERFGN----MTRVYYKE---AVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQ  580 (663)
Q Consensus       510 LqIwDTpGQErfrs----l~~~~~r~---ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL  580 (663)
                      +.|+||+|...+..    .... +..   +.-.+||++.+... ....+   +..+..........-. .-=+|.+|.|-
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~-L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE  293 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAM-LHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE  293 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHH-HhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence            89999999653322    1221 222   34558899988643 23332   2222221100000000 12477799996


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       581 ~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ...     .-.+..++..++. ++.+++.  |.+|-+
T Consensus       294 t~~-----~G~~l~~~~~~~l-Pi~yvt~--Gq~VPe  322 (374)
T PRK14722        294 ASN-----LGGVLDTVIRYKL-PVHYVST--GQKVPE  322 (374)
T ss_pred             CCC-----ccHHHHHHHHHCc-CeEEEec--CCCCCc
Confidence            542     3455666777774 5666653  444443

>PRK13796 GTPase YqeH; Provisional

Probab=96.28  E-value=0.0063  Score=66.28  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      .+++|||.+|||||||+|+++.....      ....++.+.+  ...+.++++    ..|+||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~----~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG----SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC----cEEEECCCcc
Confidence            37999999999999999999864311      1223333333  334444443    4699999964

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.24  E-value=0.0075  Score=62.16  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .++|+|.+|||||||+|++++..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            68999999999999999999753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=96.16  E-value=0.01  Score=64.48  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER  520 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr  520 (663)
                      .+|+|+|.+|||||||+|++++...      .....+..+.+.  ..+.+++.    +.|+||||-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~~----~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDDG----HSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCCC----CEEEECCCCCC
Confidence            4899999999999999999997432      223334444333  23444333    57999999643

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.09  E-value=0.026  Score=52.87  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCCCccccceee--eceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         462 LVIGELGAGKTSIIKRYVHQFFSPHYRATIGV--DFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       462 VVLGd~GVGKTSLInrLlg~~fsee~~~Tigi--Df~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      +.-|.+|+|||++...+...-. ....+..-+  |.....+      .+.+.|+|+++..  .......+..+|.+|++.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~~~~------~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~   74 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGLANL------DYDYIIIDTGAGI--SDNVLDFFLAADEVIVVT   74 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCCCCC------CCCEEEEECCCCC--CHHHHHHHHhCCeEEEEc
Confidence            3457889999999877653211 111111111  1111111      1568999999753  333456788999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      +.+ ..++..+...++.+...     ....++.+|.|+++-
T Consensus        75 ~~~-~~s~~~~~~~l~~l~~~-----~~~~~~~lVvN~~~~  109 (139)
T cd02038          75 TPE-PTSITDAYALIKKLAKQ-----LRVLNFRVVVNRAES  109 (139)
T ss_pred             CCC-hhHHHHHHHHHHHHHHh-----cCCCCEEEEEeCCCC
Confidence            876 45555555555555432     123567899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK12289 GTPase RsgA; Reviewed

Probab=96.05  E-value=0.011  Score=64.49  Aligned_cols=58  Identities=19%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC-ccccc-----eeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP-HYRAT-----IGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse-e~~~T-----igiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      .++|+|.+|||||||+|.|++..... ...+.     -........+.+.++    ..|+||||-..+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g----~~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG----GLLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC----cEEEeCCCcccc
Confidence            38999999999999999999653221 11111     001111233344333    259999997544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.05  E-value=0.011  Score=62.10  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcc-c-----cceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHY-R-----ATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~-~-----~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      -.++++|.+|||||||++.+++....... .     .+.........+.+.+.    ..++||||...|
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~----~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG----GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC----CEEEECCCCCcc
Confidence            37999999999999999999875432111 1     11111122233344322    259999998765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.02  E-value=0.025  Score=60.63  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN  600 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g  600 (663)
                      ..+.+--+.+.|-+|||+++.+++ +...+..++-...       ..++..|||.||+||.++. ....++...+....|
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae-------~~gi~pvIvlnK~DL~~~~-~~~~~~~~~~y~~~g  141 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE-------AGGIEPVIVLNKIDLLDDE-EAAVKELLREYEDIG  141 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH-------HcCCcEEEEEEccccCcch-HHHHHHHHHHHHhCC
Confidence            344444566788899999999876 5666666665554       2567788999999998754 111134555666677


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      . ..+.+|++++.+++++...+..++
T Consensus       142 y-~v~~~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         142 Y-PVLFVSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             e-eEEEecCcCcccHHHHHHHhcCCe
Confidence            5 799999999999999998876554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.99  E-value=0.04  Score=48.37  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .|+|+|++|+|||+|++.+....
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999988753

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.97  E-value=0.035  Score=62.04  Aligned_cols=103  Identities=11%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             EEEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ..+.++||+|.....    .....+..  ...-.+||.|.+-  ..+.+..++..+..       . -.-=+|.+|.|-.
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~~~f~~-------~-~~~~~I~TKlDEt  339 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVISAYQG-------H-GIHGCIITKVDEA  339 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHHHHhcC-------C-CCCEEEEEeeeCC
Confidence            467899999964321    22222221  2346778999883  23344444443331       0 1224888999964


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHHH----HHHHHHHh
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAAK----TLVQKILE  628 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELFe----~IIr~Ile  628 (663)
                      ..     .-.+..++..++. ++.+++  +|.+| +++..    .+++.++.
T Consensus       340 ~~-----~G~~l~~~~~~~l-Pi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~  383 (420)
T PRK14721        340 AS-----LGIALDAVIRRKL-VLHYVT--NGQKVPEDLHEANSRYLLHRIFK  383 (420)
T ss_pred             CC-----ccHHHHHHHHhCC-CEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence            42     3445667777775 566664  46666 44432    24454544

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=95.92  E-value=0.12  Score=58.03  Aligned_cols=142  Identities=17%  Similarity=0.267  Sum_probs=80.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC-----------------CC----ccccceeeec---eeEEEecCCceeEEEEEEe
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF-----------------SP----HYRATIGVDF---ALKVLSWDHETIIRLQLWD  514 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f-----------------se----e~~~TigiDf---~~ktV~vdge~~vkLqIwD  514 (663)
                      +=|.|||+..+|||||+.||+.--.                 ++    ....|..--|   ....+.++++..+++.++|
T Consensus        18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD   97 (492)
T PF09547_consen   18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID   97 (492)
T ss_pred             eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence            5699999999999999999983111                 10    1111111122   2234556655578999999


Q ss_pred             CCC--------cc-----ch------hh---hHH-------HHHh--cCcEEEEEEeCC--C--cccHHHH-HHHHHHHH
Q psy4094         515 IAG--------QE-----RF------GN---MTR-------VYYK--EAVGAFIVFDVT--R--AATFDAV-LKWKQDLD  558 (663)
Q Consensus       515 TpG--------QE-----rf------rs---l~~-------~~~r--~ADgaILVyDVT--d--~~SFe~L-~~wieeL~  558 (663)
                      +-|        +.     |+      ..   ...       ..++  ..=|+++.-|-+  +  ++.|..+ ...+.+|+
T Consensus        98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk  177 (492)
T PF09547_consen   98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK  177 (492)
T ss_pred             ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence            877        11     11      00   000       0111  122444443332  2  3344433 35667777


Q ss_pred             hhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         559 AKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       559 ~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      .       -+.|+|++.|=.+-..   ....+.+.++...|+. +.+.+++..
T Consensus       178 ~-------igKPFvillNs~~P~s---~et~~L~~eL~ekY~v-pVlpvnc~~  219 (492)
T PF09547_consen  178 E-------IGKPFVILLNSTKPYS---EETQELAEELEEKYDV-PVLPVNCEQ  219 (492)
T ss_pred             H-------hCCCEEEEEeCCCCCC---HHHHHHHHHHHHHhCC-cEEEeehHH
Confidence            4       3689999999887433   2355666777777884 777777654

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.91  E-value=0.013  Score=58.63  Aligned_cols=141  Identities=18%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh----C----------CCC-------CccccceeeeceeEEEecC------------Cc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH----Q----------FFS-------PHYRATIGVDFALKVLSWD------------HE  505 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg----~----------~fs-------ee~~~TigiDf~~ktV~vd------------ge  505 (663)
                      ..|+|+|+.||||||.+-++..    .          .|.       ..|....++.+.......+            ..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            3689999999999999987752    1          111       0111222333221110000            00


Q ss_pred             eeEEEEEEeCCCccchh----hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         506 TIIRLQLWDIAGQERFG----NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfr----sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      ..+.+.|+||+|...+.    ..+..++  ...+-++||.|++...  +.+. .+..+...+.      + -=+|.+|.|
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~~------~-~~lIlTKlD  151 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAFG------I-DGLILTKLD  151 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHSS------T-CEEEEESTT
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhccc------C-ceEEEEeec
Confidence            02468999999954322    1222222  2467899999998643  2333 2222332211      1 147789999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ....     .-.+..++...+. ++-+++-  |.+|++
T Consensus       152 et~~-----~G~~l~~~~~~~~-Pi~~it~--Gq~V~D  181 (196)
T PF00448_consen  152 ETAR-----LGALLSLAYESGL-PISYITT--GQRVDD  181 (196)
T ss_dssp             SSST-----THHHHHHHHHHTS-EEEEEES--SSSTTG
T ss_pred             CCCC-----cccceeHHHHhCC-CeEEEEC--CCChhc
Confidence            6442     3456677777774 6666653  555543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.90  E-value=0.11  Score=56.02  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             EEEEEeCCCccchhhhHHHHHh--------cCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYK--------EAVGAFIVFDVTRAATFD-AVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r--------~ADgaILVyDVTd~~SFe-~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      ...|+.+.|-..-..+...++.        ..+++|.|+|+.+..... .......++.    .      .=+||.||+|
T Consensus        92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~----~------AD~IvlnK~D  161 (318)
T PRK11537         92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG----Y------ADRILLTKTD  161 (318)
T ss_pred             CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH----h------CCEEEEeccc
Confidence            4567788887665555555432        247899999987532211 1111223333    1      1279999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcC-CCeEEEEeCCCCcCHHHHH
Q psy4094         580 QPKEGIANNPAKIDEFIKEHN-FSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       580 L~der~~Vs~eei~qlak~~g-~i~ffEtSAKtGeNVeELF  619 (663)
                      +..+.     +.+.+..+..+ ..+++.+. ........+|
T Consensus       162 l~~~~-----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        162 VAGEA-----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             cCCHH-----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            87632     45555555543 34555543 2233444444

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.034  Score=68.77  Aligned_cols=112  Identities=21%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC--cc----ccceeeeceeEEEecCCceeEEEEEEeCCCcc--------chhhhH
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP--HY----RATIGVDFALKVLSWDHETIIRLQLWDIAGQE--------RFGNMT  525 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse--e~----~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--------rfrsl~  525 (663)
                      =.+|||.+|+||||++.. .+..|.-  ..    ...+|  .......+.+    .-.++||+|.-        .....|
T Consensus       127 Wy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d----eaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         127 WYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG--TRNCDWWFTD----EAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             ceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC--CcccCccccc----ceEEEcCCcceecccCcchhhHHHH
Confidence            368999999999999954 2333321  11    11111  1111122222    36799999821        233455


Q ss_pred             HHHH---------hcCcEEEEEEeCCCccc---------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         526 RVYY---------KEAVGAFIVFDVTRAAT---------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       526 ~~~~---------r~ADgaILVyDVTd~~S---------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      ..++         +-.||||++.|+.+--.         ...+..-+.+|...+    ...+||.|++||.|+..
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL----~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL----HARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh----ccCCceEEEEecccccc
Confidence            5442         45799999999976221         122333455565543    25699999999999865

>COG1162 Predicted GTPases [General function prediction only]

Probab=95.85  E-value=0.011  Score=63.21  Aligned_cols=58  Identities=16%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCC------CCccccceeeeceeEEEecC-CceeEEEEEEeCCCccchh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFF------SPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~f------see~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQErfr  522 (663)
                      -.+++|.+|||||||+|++..+..      .+....+-........+.++ ++     .|+||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG-----~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG-----WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC-----EEEeCCCCCccC
Confidence            578999999999999999986321      22221222222334555564 33     589999976653

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=95.78  E-value=0.19  Score=47.48  Aligned_cols=81  Identities=11%  Similarity=-0.028  Sum_probs=51.6

Q ss_pred             EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN  588 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs  588 (663)
                      .+.|+|+++....  .....+..+|.+|++.+.+ ..++..+..+++.+...      ....+.+|.|+.|.....   .
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~------~~~~~~iv~N~~~~~~~~---~  131 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL------GIKVVGVIVNRVRPDMVE---G  131 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc------CCceEEEEEeCCcccccc---h
Confidence            5899999986433  3445678899999999776 45666666666666531      123467999999864322   2


Q ss_pred             HHHHHHHHHHcCC
Q psy4094         589 PAKIDEFIKEHNF  601 (663)
Q Consensus       589 ~eei~qlak~~g~  601 (663)
                      .+....+...++.
T Consensus       132 ~~~~~~~~~~~~~  144 (179)
T cd02036         132 GDMVEDIEEILGV  144 (179)
T ss_pred             hhHHHHHHHHhCC
Confidence            2223445555564

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.74  E-value=0.032  Score=54.33  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             EEEEEEeCCCccchhhh--HHHH---HhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNM--TRVY---YKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl--~~~~---~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ....|+.+.|...-..+  ....   .-..+.+|.|+|..+-.....+. .+..+|.    .      .=+||.||+|+.
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~----~------ADvIvlnK~D~~  154 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA----F------ADVIVLNKIDLV  154 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC----T-------SEEEEE-GGGH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch----h------cCEEEEeccccC
Confidence            34567777775443333  1111   22368899999997643333332 2333333    1      127999999986


Q ss_pred             CCCCCCCHHHHHHHHHHcC
Q psy4094         582 KEGIANNPAKIDEFIKEHN  600 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g  600 (663)
                      ...  ...+..+++.+..+
T Consensus       155 ~~~--~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  155 SDE--QKIERVREMIRELN  171 (178)
T ss_dssp             HHH----HHHHHHHHHHH-
T ss_pred             Chh--hHHHHHHHHHHHHC
Confidence            532  12245555555543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00098 GTPase RsgA; Reviewed

Probab=95.71  E-value=0.018  Score=60.87  Aligned_cols=58  Identities=16%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc-cccc---ee--eeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH-YRAT---IG--VDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee-~~~T---ig--iDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      .++|+|.+|||||||+|.+++...... ..+.   -|  .......+.+++.    ..|+||||...+
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~----~~~~DtpG~~~~  229 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG----GLLIDTPGFSSF  229 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC----cEEEECCCcCcc
Confidence            689999999999999999987533211 1110   00  1112233334332    368999997643

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.59  E-value=0.073  Score=47.85  Aligned_cols=100  Identities=16%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             EeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC
Q psy4094         464 IGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR  543 (663)
Q Consensus       464 LGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd  543 (663)
                      =+.+|+||||+...+...-.........-+|       .+-.....+.|+|+++....  .....+..||.+|++.+.+ 
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-------~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-   75 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVD-------LDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-   75 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-------CCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-
Confidence            3567899999887765421111122222222       22111126899999986533  3445778899999998765 


Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCC-CCcEEEEEeC
Q psy4094         544 AATFDAVLKWKQDLDAKVTLPDGN-PIPCVLLANK  577 (663)
Q Consensus       544 ~~SFe~L~~wieeL~~~~~~~~~~-~IPIILVGNK  577 (663)
                      ..++..+..+++.+...    ... ...+.+|+|+
T Consensus        76 ~~s~~~~~~~~~~l~~~----~~~~~~~~~lVvNr  106 (106)
T cd03111          76 LPSIRNAKRLLELLRVL----DYSLPAKIELVLNR  106 (106)
T ss_pred             hHHHHHHHHHHHHHHHc----CCCCcCceEEEecC
Confidence            56777777777777642    222 3467788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.59  E-value=0.062  Score=59.99  Aligned_cols=89  Identities=15%  Similarity=0.237  Sum_probs=51.7

Q ss_pred             EEEEEEeCCCccchh----hhHHHHHh---cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYYK---EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~r---~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsD  579 (663)
                      +.+.|+||+|.....    .....++.   ...-++||++.+-.  ...+...+..+..         ++ --||.+|.|
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---------~~~~~vI~TKlD  368 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---------LPLDGLIFTKLD  368 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---------CCCCEEEEeccc
Confidence            578999999964332    22333444   23466788887632  2333333333331         22 258899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      -...     .-.+..++...+. ++.+++.  |.+|
T Consensus       369 et~~-----~G~i~~~~~~~~l-Pv~yit~--Gq~V  396 (424)
T PRK05703        369 ETSS-----LGSILSLLIESGL-PISYLTN--GQRV  396 (424)
T ss_pred             cccc-----ccHHHHHHHHHCC-CEEEEeC--CCCC
Confidence            7442     2356777777885 6666653  5665

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.55  E-value=0.089  Score=43.67  Aligned_cols=68  Identities=22%  Similarity=0.148  Sum_probs=44.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh-HHHHHhcCcEEEEEE
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM-TRVYYKEAVGAFIVF  539 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl-~~~~~r~ADgaILVy  539 (663)
                      |++.|..|+||||++..+...--.          ...+.+.++     .+.|+|+++....... .......+|.+++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~----------~g~~v~~~~-----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~   66 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK----------RGKRVLLID-----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVT   66 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEC-----CEEEEeCCCCccchhhhhhhhhhhCCEEEEec
Confidence            678899999999999887642111          111222222     3789999986543321 245667799999999


Q ss_pred             eCCC
Q psy4094         540 DVTR  543 (663)
Q Consensus       540 DVTd  543 (663)
                      +...
T Consensus        67 ~~~~   70 (99)
T cd01983          67 TPEA   70 (99)
T ss_pred             CCch
Confidence            7764

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF05729 NACHT: NACHT domain

Probab=95.43  E-value=0.03  Score=51.53  Aligned_cols=21  Identities=29%  Similarity=0.743  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|.|++|+|||+|+.+++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999998753

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=95.30  E-value=0.25  Score=53.67  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=55.8

Q ss_pred             EEEEEEeCCCccchhhhHHHHH-------hcCcEEEEEEeCCCccc--H--------------------HHHHH-HHHHH
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYY-------KEAVGAFIVFDVTRAAT--F--------------------DAVLK-WKQDL  557 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~-------r~ADgaILVyDVTd~~S--F--------------------e~L~~-wieeL  557 (663)
                      ....++.+.|-.....+...+.       -..|++|.|+|+.+-..  +                    ..+.. +..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4567888888776665555542       13578999999874321  1                    00111 12333


Q ss_pred             HhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-cC-CCeEEEEeCCCCcCHHHHHHH
Q psy4094         558 DAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-HN-FSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       558 ~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-~g-~i~ffEtSAKtGeNVeELFe~  621 (663)
                      .          ..=+||.||+|+..+.   ..+.+.+..+. .+ ...++++. ........+|..
T Consensus       173 ~----------~AD~IvlnK~Dl~~~~---~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~  224 (341)
T TIGR02475       173 A----------CADLVILNKADLLDAA---GLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL  224 (341)
T ss_pred             H----------hCCEEEEeccccCCHH---HHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence            2          1127999999987643   34455555555 33 23456554 334566666653

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13173 AAA_14: AAA domain

Probab=95.20  E-value=0.038  Score=50.80  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      -++|.|..+||||||+.+++...
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~   26 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDL   26 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.11  E-value=0.78  Score=45.91  Aligned_cols=145  Identities=17%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCC-Ccc--------------ch-
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA-GQE--------------RF-  521 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTp-GQE--------------rf-  521 (663)
                      .+||.|-|.+|||||||+.++...--...  -.+| -|....+.-++. .+-|.|.|+. |..              +| 
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGk-R~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGK-RIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCe-EeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            47999999999999999998874211110  1111 233333443332 4445555554 211              11 


Q ss_pred             ------h----hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy4094         522 ------G----NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAK  591 (663)
Q Consensus       522 ------r----sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~ee  591 (663)
                            .    ......+..||++|+  |=--+..|. ...+...+...+    ..+.|+|.+..+.+...         
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk-s~~f~~~ve~vl----~~~kpliatlHrrsr~P---------  144 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK-SKKFREAVEEVL----KSGKPLIATLHRRSRHP---------  144 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc-cHHHHHHHHHHh----cCCCcEEEEEecccCCh---------
Confidence                  1    122334455676654  332222221 133444444432    24578888888765311         


Q ss_pred             HHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         592 IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       592 i~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      ..+-++..+.. |+.   .+-.|=+.++..|++.+
T Consensus       145 ~v~~ik~~~~v-~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         145 LVQRIKKLGGV-YVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             HHHHhhhcCCE-EEE---EccchhhHHHHHHHHHh
Confidence            22233444543 332   45556668888887765

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.08  E-value=0.083  Score=59.12  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC---------CCc------------cccceeeeceeEE--------Ee-cCCceeE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF---------SPH------------YRATIGVDFALKV--------LS-WDHETII  508 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f---------see------------~~~TigiDf~~kt--------V~-vdge~~v  508 (663)
                      ..|+|+|..||||||++..+.....         ..+            +....++.+....        +. +.....+
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~  321 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence            4799999999999999998863110         000            0011111111000        00 0000024


Q ss_pred             EEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         509 RLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       509 kLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      .+.|+||+|.....    ..+..++.  ..+.++||+|++-.  ...+..++..+...        -.-=||.+|.|-..
T Consensus       322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~--------~idglI~TKLDET~  391 (436)
T PRK11889        322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI--------HIDGIVFTKFDETA  391 (436)
T ss_pred             CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC--------CCCEEEEEcccCCC
Confidence            68999999964321    11222332  35678899887632  23344455444420        11248889999655


Q ss_pred             CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      .     .-.+..++...++ ++.+++  +|.+|-+
T Consensus       392 k-----~G~iLni~~~~~l-PIsyit--~GQ~VPe  418 (436)
T PRK11889        392 S-----SGELLKIPAVSSA-PIVLMT--DGQDVKK  418 (436)
T ss_pred             C-----ccHHHHHHHHHCc-CEEEEe--CCCCCCc
Confidence            2     2345566777775 555554  3555443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.04  E-value=0.15  Score=56.73  Aligned_cols=92  Identities=14%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             EEEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|...+.    .....++.  ..+.++||.+.+  .....+..++..+..       - -+--+|.+|.|-.
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~-------l-~i~glI~TKLDET  355 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE-------I-PIDGFIITKMDET  355 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc-------C-CCCEEEEEcccCC
Confidence            578999999974322    22233333  235666776653  333444444333221       1 1225889999965


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ..     .-.+..++...+. ++.+++.  |.+|.+
T Consensus       356 ~~-----~G~~Lsv~~~tgl-PIsylt~--GQ~Vpd  383 (407)
T PRK12726        356 TR-----IGDLYTVMQETNL-PVLYMTD--GQNITE  383 (407)
T ss_pred             CC-----ccHHHHHHHHHCC-CEEEEec--CCCCCc
Confidence            42     3455667777775 6666654  555543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.02  E-value=0.11  Score=59.21  Aligned_cols=103  Identities=13%  Similarity=0.106  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCccchhh---hHHHHHhcC---cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFGN---MTRVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfrs---l~~~~~r~A---DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ..+.++||+|......   .....+...   .-.+||+|.+-..  ..+.+.+..+..       . ..--+|.||.|-.
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~-------~-~~~g~IlTKlDet  404 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG-------P-GLAGCILTKLDEA  404 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc-------C-CCCEEEEeCCCCc
Confidence            3578999999432221   111122221   2267888887422  333333333321       1 1234678999964


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHHH----HHHHHHHh
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAAK----TLVQKILE  628 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELFe----~IIr~Ile  628 (663)
                      .     ..-.+..++..++. ++.+++  +|.+| ++|..    .+++.++.
T Consensus       405 ~-----~~G~~l~i~~~~~l-PI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        405 A-----SLGGALDVVIRYKL-PLHYVS--NGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             c-----cchHHHHHHHHHCC-CeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence            4     23456667777775 666664  46677 54432    35555554

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.91  E-value=0.13  Score=56.92  Aligned_cols=94  Identities=12%  Similarity=0.042  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCccchh----hhHHHHHhcC--c-EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYYKEA--V-GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~r~A--D-gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      +.+.|+||+|.....    .....++..+  + -.+||.|++..  ...+...+..+.. +       -+-=+|.+|.|-
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-~-------~~~~~I~TKlDe  324 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-F-------SYKTVIFTKLDE  324 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-C-------CCCEEEEEeccC
Confidence            679999999964322    1222333332  3 57899999865  3344444333321 0       122488899996


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHH
Q psy4094         581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAA  619 (663)
Q Consensus       581 ~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELF  619 (663)
                      ...     .-.+..++...+. ++.+++  +|.+| +++.
T Consensus       325 t~~-----~G~~l~~~~~~~~-Pi~yit--~Gq~vPeDl~  356 (388)
T PRK12723        325 TTC-----VGNLISLIYEMRK-EVSYVT--DGQIVPHNIS  356 (388)
T ss_pred             CCc-----chHHHHHHHHHCC-CEEEEe--CCCCChhhhh
Confidence            443     2445566666774 565554  46677 4443

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=94.83  E-value=0.42  Score=51.85  Aligned_cols=90  Identities=14%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             EEEEEEeCCCccchhhhHHHHHh--------cCcEEEEEEeCCCcccHHH-HHH-HHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYK--------EAVGAFIVFDVTRAATFDA-VLK-WKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r--------~ADgaILVyDVTd~~SFe~-L~~-wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      +...++.+.|-..-..+...++.        .-|++|-|+|+.+-..... +.. ...++.          ..=+||.||
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia----------~AD~ivlNK  154 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA----------FADVIVLNK  154 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH----------hCcEEEEec
Confidence            34566777775443333333332        2477899999876433221 222 222332          112799999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHcCC-CeEEEEeCC
Q psy4094         578 CDQPKEGIANNPAKIDEFIKEHNF-SGWFETSAK  610 (663)
Q Consensus       578 sDL~der~~Vs~eei~qlak~~g~-i~ffEtSAK  610 (663)
                      +|+.+..   ..+..++..+..+- .+++.++..
T Consensus       155 ~Dlv~~~---~l~~l~~~l~~lnp~A~i~~~~~~  185 (323)
T COG0523         155 TDLVDAE---ELEALEARLRKLNPRARIIETSYG  185 (323)
T ss_pred             ccCCCHH---HHHHHHHHHHHhCCCCeEEEcccc
Confidence            9998754   24555666666543 567777763

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.69  E-value=0.23  Score=59.37  Aligned_cols=154  Identities=14%  Similarity=0.147  Sum_probs=78.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc---cccceeeece----------------eEEEecCC----------ceeEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH---YRATIGVDFA----------------LKVLSWDH----------ETIIRL  510 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee---~~~TigiDf~----------------~ktV~vdg----------e~~vkL  510 (663)
                      -|+|||..||||||++..+........   ...-++.|.+                .....+.+          -..+.+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            689999999999999988874321000   0000111110                00000000          012468


Q ss_pred             EEEeCCCccc----hhhhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         511 QLWDIAGQER----FGNMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       511 qIwDTpGQEr----frsl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      .|+||+|...    .........  ...+-.+||.|.+..  .+.+...+..+....    ..+ +-=+|.+|.|-... 
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~----~~~-i~glIlTKLDEt~~-  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA----GED-VDGCIITKLDEATH-  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc----cCC-CCEEEEeccCCCCC-
Confidence            9999999321    112222222  234567899998742  233333333333210    001 12478999996542 


Q ss_pred             CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHHH----HHHHHHHh
Q psy4094         585 IANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAAK----TLVQKILE  628 (663)
Q Consensus       585 ~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELFe----~IIr~Ile  628 (663)
                          .-.+..++...+. ++.+++  +|.+| +++..    .+++.++.
T Consensus       339 ----~G~iL~i~~~~~l-PI~yit--~GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        339 ----LGPALDTVIRHRL-PVHYVS--TGQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             ----ccHHHHHHHHHCC-CeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence                2445666777774 666664  46666 45433    35555554

>PHA02518 ParA-like protein; Provisional

Probab=94.40  E-value=0.25  Score=48.05  Aligned_cols=67  Identities=13%  Similarity=0.118  Sum_probs=42.0

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsD  579 (663)
                      +.+.|+|++|..  ..+....+..+|.+|++...+ ..++..+..++..+......  ..+.+ +.||.|+.+
T Consensus        77 ~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~  144 (211)
T PHA02518         77 YDYVVVDGAPQD--SELARAALRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAI  144 (211)
T ss_pred             CCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccC
Confidence            678999999873  455677888999999999776 34444444444433332111  12344 456778765

>PRK04195 replication factor C large subunit; Provisional

Probab=94.38  E-value=0.45  Score=53.71  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|.|++|+|||++++.++..
T Consensus        41 ~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         41 ALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.29  E-value=0.37  Score=50.95  Aligned_cols=139  Identities=16%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC---------C------------ccccceeeeceeEEEe----------cCCcee
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS---------P------------HYRATIGVDFALKVLS----------WDHETI  507 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs---------e------------e~~~TigiDf~~ktV~----------vdge~~  507 (663)
                      -+|+|+|..|+|||||+..+......         .            .+....++.+... ..          +.....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            48999999999999999877532100         0            0111111111110 00          000012


Q ss_pred             EEEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|.....    ..+..++.  ..+-++||.|++-  ..+.+..++..+.. +       -+-=+|.+|.|-.
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~-~-------~~~~~I~TKlDet  224 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKD-I-------HIDGIVFTKFDET  224 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCC-C-------CCCEEEEEeecCC
Confidence            578999999965321    11222222  3567889999863  22344445554442 1       1224888999965


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      ...     -.+..++...+. ++.+++  +|.+|-
T Consensus       225 ~~~-----G~~l~~~~~~~~-Pi~~it--~Gq~vp  251 (270)
T PRK06731        225 ASS-----GELLKIPAVSSA-PIVLMT--DGQDVK  251 (270)
T ss_pred             CCc-----cHHHHHHHHHCc-CEEEEe--CCCCCC
Confidence            522     345566666774 555554  344444

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.22  E-value=0.13  Score=57.70  Aligned_cols=134  Identities=19%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCC-CC---------Cc------------cccceeeeceeEE-----E-ecCCceeEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQF-FS---------PH------------YRATIGVDFALKV-----L-SWDHETIIRL  510 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~-fs---------ee------------~~~TigiDf~~kt-----V-~vdge~~vkL  510 (663)
                      .-|+|+|.+||||||++.+|.... ..         .+            |....++.+....     . .+.. ..+.+
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~  302 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSEL  302 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCE
Confidence            368899999999999999987421 00         00            0011122221100     0 0000 12568


Q ss_pred             EEEeCCCccch-h---hhHHHHHhc-----CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         511 QLWDIAGQERF-G---NMTRVYYKE-----AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       511 qIwDTpGQErf-r---sl~~~~~r~-----ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      .|+||+|.... .   ..+..++..     ..-.+||+|++-..  +.+...+..+.. +       -+-=+|.+|.|-.
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~-~-------~~~glIlTKLDEt  372 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES-L-------NYRRILLTKLDEA  372 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC-C-------CCCEEEEEcccCC
Confidence            99999996421 1   122223322     33678899988543  333333333321 1       1124888999964


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ...     -.+..++...+. ++.+++.
T Consensus       373 ~~~-----G~il~i~~~~~l-PI~ylt~  394 (432)
T PRK12724        373 DFL-----GSFLELADTYSK-SFTYLSV  394 (432)
T ss_pred             CCc-----cHHHHHHHHHCC-CEEEEec
Confidence            422     345666667774 6666654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=94.21  E-value=0.044  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|.+|||||||++.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999876

...

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=94.02  E-value=0.17  Score=42.24  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             cCcEEEEEEeCCC--cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         531 EAVGAFIVFDVTR--AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       531 ~ADgaILVyDVTd--~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      -.++++|++|++.  +.+.+.=..++.+++..     ..+.|+|+|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-----F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-----FPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-----TTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-----cCCCCEEEEEeccC
Confidence            3689999999996  45566666777777764     24799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=93.90  E-value=0.33  Score=49.56  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=18.2

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|+|.+|+||||++..+..
T Consensus         2 Ivl~G~pGSGKST~a~~La~   21 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAK   21 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999998864

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=93.89  E-value=0.27  Score=48.66  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEE--EEEeC-CCccchhhhHHHHHhcCcEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL--QLWDI-AGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkL--qIwDT-pGQErfrsl~~~~~r~ADgaI  536 (663)
                      .++|+|+.|+|||||++.+.+-...     +-|.      +.+++. .+.+  +-.+. .|+.+--.+...++.+.+++|
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~------i~~~g~-~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIP-----NGDN------DEWDGI-TPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC-----CCcE------EEECCE-EEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            7999999999999999988774321     1120      111221 1111  11112 244444456666677776666


Q ss_pred             E--EEeCCCcccHHHHHHHHHHHH
Q psy4094         537 I--VFDVTRAATFDAVLKWKQDLD  558 (663)
Q Consensus       537 L--VyDVTd~~SFe~L~~wieeL~  558 (663)
                      +  -...-|..+-+.+..|+..+.
T Consensus        95 LDEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 FDEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHH
Confidence            5  122223444555556665554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG4181|consensus

Probab=93.83  E-value=0.89  Score=50.23  Aligned_cols=84  Identities=18%  Similarity=0.194  Sum_probs=48.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcc-----------------ccceeeecee---EEEecCCceeEEE------EE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHY-----------------RATIGVDFAL---KVLSWDHETIIRL------QL  512 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~-----------------~~TigiDf~~---ktV~vdge~~vkL------qI  512 (663)
                      .-|.+||..|+|||+|++.+.++.....|                 ..|+++|++.   ..+.++.+..+.+      .+
T Consensus       189 ~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~~Id~~i~q~~i~fldtqpl~sfsi~e~~i~  268 (491)
T KOG4181|consen  189 TVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTHKIDPNIGQKSILFLDTQPLQSFSIRERHIL  268 (491)
T ss_pred             eEEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhccceeccccccccceEEeeccccccchHHHhhhhc
Confidence            35779999999999999988876543332                 2345555543   2333343322222      23


Q ss_pred             EeCCCcc------ch---h--hhHHHHHhcCcEEEEEEeCC
Q psy4094         513 WDIAGQE------RF---G--NMTRVYYKEAVGAFIVFDVT  542 (663)
Q Consensus       513 wDTpGQE------rf---r--sl~~~~~r~ADgaILVyDVT  542 (663)
                      .|++--.      .+   .  .++...+.-|+++|+|.|--
T Consensus       269 ~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~  309 (491)
T KOG4181|consen  269 LDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGL  309 (491)
T ss_pred             cCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecch
Confidence            3343211      11   1  23444567799999999854

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=93.83  E-value=0.17  Score=56.34  Aligned_cols=153  Identities=16%  Similarity=0.253  Sum_probs=80.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcccc---ceeeeceeE---------------EEe--cCC---------ceeEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRA---TIGVDFALK---------------VLS--WDH---------ETIIR  509 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~---TigiDf~~k---------------tV~--vdg---------e~~vk  509 (663)
                      -.|+|||+.||||||-+-.|........-..   -++.|.+..               .+.  ...         -..+.
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d  283 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD  283 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence            3799999999999998766653222111111   111121110               010  000         01367


Q ss_pred             EEEEeCCCccchh----hhHHHHHhcC--cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCC
Q psy4094         510 LQLWDIAGQERFG----NMTRVYYKEA--VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPK  582 (663)
Q Consensus       510 LqIwDTpGQErfr----sl~~~~~r~A--DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~d  582 (663)
                      +.++||.|...++    ..+..|+..+  .-+.||++++-  ..+.+...+..+..         +|+ =++.+|.|-..
T Consensus       284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~---------~~i~~~I~TKlDET~  352 (407)
T COG1419         284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL---------FPIDGLIFTKLDETT  352 (407)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc---------CCcceeEEEcccccC
Confidence            9999999976443    3344444443  23446777763  34555555555542         222 37889999543


Q ss_pred             CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH-----HHHHHHHHHhhh
Q psy4094         583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA-----AKTLVQKILEND  630 (663)
Q Consensus       583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL-----Fe~IIr~Ile~~  630 (663)
                           ..-.+..++...+. ++-+++  +|.+|-+=     -.|+++.++.-.
T Consensus       353 -----s~G~~~s~~~e~~~-PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~  397 (407)
T COG1419         353 -----SLGNLFSLMYETRL-PVSYVT--NGQRVPEDIVVANPDYLVRRILGTF  397 (407)
T ss_pred             -----chhHHHHHHHHhCC-CeEEEe--CCCCCCchhhhcChHHHHHHHhccc
Confidence                 23444555666664 444443  45554332     245666665543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=93.81  E-value=0.052  Score=49.59  Aligned_cols=20  Identities=35%  Similarity=0.707  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|+|.+|+|||||+.++..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>KOG1533|consensus

Probab=93.77  E-value=0.025  Score=59.12  Aligned_cols=68  Identities=15%  Similarity=0.142  Sum_probs=37.8

Q ss_pred             EEEEEEeCCCccchh----hhH--HHHHhcCcEEEEEEeCCC------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094         508 IRLQLWDIAGQERFG----NMT--RVYYKEAVGAFIVFDVTR------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA  575 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~--~~~~r~ADgaILVyDVTd------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG  575 (663)
                      -.+.++|+|||.++-    .++  -.+++.-+.-+.++.+.|      +..|-..  ++-.+...+.    -..|-|=|.
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tMl~----melphVNvl  170 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATMLH----MELPHVNVL  170 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHHHh----hcccchhhh
Confidence            468899999996531    222  223455665555555544      4444332  2222222211    237888899


Q ss_pred             eCCCCC
Q psy4094         576 NKCDQP  581 (663)
Q Consensus       576 NKsDL~  581 (663)
                      .|+|+.
T Consensus       171 SK~Dl~  176 (290)
T KOG1533|consen  171 SKADLL  176 (290)
T ss_pred             hHhHHH
Confidence            999974

>KOG1424|consensus

Probab=93.58  E-value=0.09  Score=59.93  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=41.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      .+.|.+||-++|||||+||.++|.+-. ....++.+-.|.+  +.+...    +.+.|+||-.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~ls~~----v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFLSPS----VCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE--EEcCCC----ceecCCCCcc
Confidence            689999999999999999999997643 3444555544444  444443    7899999954

>KOG0780|consensus

Probab=93.47  E-value=0.083  Score=58.62  Aligned_cols=87  Identities=16%  Similarity=0.201  Sum_probs=48.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHH--------------hCCCCCcc-------ccceeeeceeEEEecC------------Cce
Q psy4094         460 KILVIGELGAGKTSIIKRYV--------------HQFFSPHY-------RATIGVDFALKVLSWD------------HET  506 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl--------------g~~fsee~-------~~TigiDf~~ktV~vd------------ge~  506 (663)
                      -|+++|-.|+||||.+..|.              .+.|....       ..-.++.|+..-...+            .+.
T Consensus       103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke  182 (483)
T KOG0780|consen  103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE  182 (483)
T ss_pred             EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence            58999999999999988775              12221100       0011222222111110            012


Q ss_pred             eEEEEEEeCCCccc-hhhhHHHH-----HhcCcEEEEEEeCCCccc
Q psy4094         507 IIRLQLWDIAGQER-FGNMTRVY-----YKEAVGAFIVFDVTRAAT  546 (663)
Q Consensus       507 ~vkLqIwDTpGQEr-frsl~~~~-----~r~ADgaILVyDVTd~~S  546 (663)
                      .+.+.|.||.|... ...+....     .-+.|-+|||.|.+-...
T Consensus       183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            47899999999432 11221111     234789999999986654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.45  E-value=0.086  Score=45.52  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=22.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS  484 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs  484 (663)
                      -.++|+|++|+|||+++..++.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            37999999999999999999875443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=93.44  E-value=0.32  Score=44.26  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      ++|+|.+|+|||+|+..++..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHH
Confidence            689999999999999998753

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=93.42  E-value=0.11  Score=50.88  Aligned_cols=44  Identities=18%  Similarity=0.086  Sum_probs=28.0

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      |++++|+|+.++.+... ..+.+.+.  +   ...+.|+|+|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l---~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--Q---AGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--h---ccCCCCEEEEEehhhcCC
Confidence            78999999988643221 12222211  0   123489999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1534|consensus

Probab=93.36  E-value=0.054  Score=56.03  Aligned_cols=112  Identities=12%  Similarity=0.140  Sum_probs=58.7

Q ss_pred             EEEEEeCCCccc-hh--hhHHHHHhc-----Cc-EEEEEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         509 RLQLWDIAGQER-FG--NMTRVYYKE-----AV-GAFIVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       509 kLqIwDTpGQEr-fr--sl~~~~~r~-----AD-gaILVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                      .+.|+|+|||-+ |.  ..+..+++.     -. +++++.|..= -+++.-+...+..+...+    .-.+|.|=|..|.
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi----~lE~P~INvlsKM  174 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI----SLEVPHINVLSKM  174 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH----HhcCcchhhhhHH
Confidence            378999999864 32  222222221     11 2333433221 122223333333333222    1348999999999


Q ss_pred             CCCCCCC----------------------------CCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094         579 DQPKEGI----------------------------ANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       579 DL~der~----------------------------~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr  624 (663)
                      ||...+.                            .-....+.++...++.+.|++.-..+.+.|+-++..|-.
T Consensus       175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~  248 (273)
T KOG1534|consen  175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDD  248 (273)
T ss_pred             HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHH
Confidence            9854320                            000122344555567778888887777777777766644

>PRK08118 topology modulation protein; Reviewed

Probab=93.35  E-value=0.068  Score=51.97  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+|+|||||+..+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998875

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=93.31  E-value=0.12  Score=50.78  Aligned_cols=21  Identities=33%  Similarity=0.751  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|-|.+|+|||||+.+++.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHH
Confidence            689999999999999999875

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=93.30  E-value=0.16  Score=53.40  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -+.|||+.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999987

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.30  E-value=0.22  Score=47.57  Aligned_cols=22  Identities=36%  Similarity=0.751  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|.|+.|+|||||++.++..
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK07261 topology modulation protein; Provisional

Probab=93.24  E-value=0.072  Score=51.83  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+|+|||||+..+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=93.09  E-value=0.26  Score=54.68  Aligned_cols=25  Identities=16%  Similarity=0.547  Sum_probs=21.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ...+|+|+|..|+|||||++.|...
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4469999999999999999998853

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=92.93  E-value=0.83  Score=46.94  Aligned_cols=80  Identities=23%  Similarity=0.233  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKEGIA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~der~~  586 (663)
                      +.+.|+|++|...... ....+..||.+|++...+ ..++..+...+..+.....   ..++++ .+|.|++|.      
T Consensus       116 yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~---~~~l~~~giV~Nr~~~------  184 (267)
T cd02032         116 YDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAK---TYKVRLAGLIANRTDK------  184 (267)
T ss_pred             CCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhh---ccCCceEEEEEeCCCH------
Confidence            5688999977543221 122367799999988664 4555665555555543211   234554 478999883      


Q ss_pred             CCHHHHHHHHHHcC
Q psy4094         587 NNPAKIDEFIKEHN  600 (663)
Q Consensus       587 Vs~eei~qlak~~g  600 (663)
                        ...+.++...++
T Consensus       185 --~~~i~~~~~~~~  196 (267)
T cd02032         185 --TDLIDKFVEAVG  196 (267)
T ss_pred             --HHHHHHHHHhCC
Confidence              123445555555

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=92.91  E-value=0.088  Score=47.96  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|..|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            7999999999999999888764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=92.88  E-value=0.39  Score=45.34  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|.+|+|||||++.+.+.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            6899999999999999988775

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG2485|consensus

Probab=92.83  E-value=0.17  Score=54.76  Aligned_cols=59  Identities=17%  Similarity=0.228  Sum_probs=38.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ..+.|+|+|-+|||||+|++.+......      ....++++.....+....+.-   .+.+.||+|-
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp---~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP---PVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC---ceEEecCCCc
Confidence            3489999999999999999987643222      233455554444432222222   3789999994

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=92.82  E-value=0.41  Score=51.62  Aligned_cols=102  Identities=15%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC---c-----------------
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG---Q-----------------  518 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG---Q-----------------  518 (663)
                      -+++|+|+.|.|||+++++|....... .... + +            .+-+.+..++.   .                 
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~-~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~  126 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A-E------------RIPVVYVQMPPEPDERRFYSAILEALGAPYRP  126 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C-c------------cccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence            379999999999999999999754321 1111 1 0            01122222221   1                 


Q ss_pred             ----cchhhhHHHHHhcCcEEEEEEeCCC---cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         519 ----ERFGNMTRVYYKEAVGAFIVFDVTR---AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       519 ----Erfrsl~~~~~r~ADgaILVyDVTd---~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                          ..........++.+.+=++|+|=-.   ..+...-...+..|+...   +.-.+|||+||+.-
T Consensus       127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG---NELQIPIVGVGTRE  190 (302)
T ss_pred             CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh---hccCCCeEEeccHH
Confidence                1112334456778888899997432   223334444555555432   34569999999863

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=92.74  E-value=0.068  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999754

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=92.73  E-value=0.33  Score=50.96  Aligned_cols=45  Identities=16%  Similarity=0.146  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCC-CcEEEEEeCCCC
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLANKCDQ  580 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~-IPIILVGNKsDL  580 (663)
                      ..+++|.+|+|+|.+- .++.......+ |...      -+ .+|.+|.||.|-
T Consensus       152 ~~~~vD~vivVvDpS~-~sl~taeri~~-L~~e------lg~k~i~~V~NKv~e  197 (255)
T COG3640         152 TIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEE------LGIKRIFVVLNKVDE  197 (255)
T ss_pred             cccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHH------hCCceEEEEEeeccc
Confidence            3467999999999874 44444433322 2221      22 688999999994

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=92.59  E-value=0.096  Score=51.91  Aligned_cols=22  Identities=36%  Similarity=0.792  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      +|+|+|.+|+||||++.++...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998865

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=92.57  E-value=0.15  Score=48.18  Aligned_cols=22  Identities=41%  Similarity=0.738  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|-|+-|+|||||++.|+..
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998853

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK10646 ADP-binding protein; Provisional

Probab=92.53  E-value=0.47  Score=46.42  Aligned_cols=22  Identities=36%  Similarity=0.732  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|++-|+-|+|||||++.++..
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998754

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=92.36  E-value=0.12  Score=45.82  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|.|.+|||||||++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988754

...

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=92.36  E-value=0.11  Score=46.11  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|.|++|+|||+|++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            789999999999999998764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08727 hypothetical protein; Validated

Probab=92.33  E-value=0.3  Score=49.89  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|.|.+|+|||.|+..++.
T Consensus        44 l~l~G~~G~GKThL~~a~~~   63 (233)
T PRK08727         44 LYLSGPAGTGKTHLALALCA   63 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998865

>KOG1424|consensus

Probab=92.30  E-value=0.21  Score=57.10  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK  597 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak  597 (663)
                      .|+.+|+ .+...|++|.++|+-|+--|..  +..|..++.        ....+||+.||.||...+   ......+++.
T Consensus       164 ~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d--------~~K~~~LLvNKaDLl~~~---qr~aWa~YF~  231 (562)
T KOG1424|consen  164 IWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD--------PSKANVLLVNKADLLPPE---QRVAWAEYFR  231 (562)
T ss_pred             HHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc--------cccceEEEEehhhcCCHH---HHHHHHHHHH
Confidence            4577776 4678999999999999876653  445555444        336789999999997643   2233344555


Q ss_pred             HcCCCeEEEEeCCC
Q psy4094         598 EHNFSGWFETSAKD  611 (663)
Q Consensus       598 ~~g~i~ffEtSAKt  611 (663)
                      ..+ ++++.-||..
T Consensus       232 ~~n-i~~vf~SA~~  244 (562)
T KOG1424|consen  232 QNN-IPVVFFSALA  244 (562)
T ss_pred             hcC-ceEEEEeccc
Confidence            566 5788888876

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=92.25  E-value=0.66  Score=55.75  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFF  483 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~f  483 (663)
                      -++|.|..|+|||||++.|....+
T Consensus        40 AyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         40 AYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            357899999999999998876443

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=92.18  E-value=0.43  Score=46.67  Aligned_cols=61  Identities=16%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      -|++-|+-|+|||||++-++..--........+... ...........+++.+|=....+++
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl-v~~Y~~~~~~lyH~DlYRl~d~ee~   87 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL-VEEYEEGRLPLYHFDLYRLSDPEEL   87 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee-ehhhcCCCCcEEEEeeeccCChHHh
Confidence            588999999999999999885433222222222111 1111111222466777766655443

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=91.84  E-value=1.9  Score=42.99  Aligned_cols=85  Identities=15%  Similarity=0.180  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCccchhhhH-HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMT-RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEGI  585 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~-~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der~  585 (663)
                      +.+.|+|++|......+. ....+.||.+|+++..+ ..++..+...++.+.....   ..++. ..+|.|+.+..    
T Consensus       117 yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~---~~~~~~~gvv~N~~~~~----  188 (212)
T cd02117         117 LDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAK---SGGVRLGGLICNSRNTD----  188 (212)
T ss_pred             CCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCc---ccCCcEEEEEEeCCCCc----
Confidence            678899997654322221 11124699999999764 4455444444444443211   11343 45999999853    


Q ss_pred             CCCHHHHHHHHHHcCC
Q psy4094         586 ANNPAKIDEFIKEHNF  601 (663)
Q Consensus       586 ~Vs~eei~qlak~~g~  601 (663)
                       ...+...+++..++.
T Consensus       189 -~~~~~~~~~~~~~~~  203 (212)
T cd02117         189 -RETELIDAFAERLGT  203 (212)
T ss_pred             -cHHHHHHHHHHHcCC
Confidence             233456777777774

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK06217 hypothetical protein; Validated

Probab=91.83  E-value=0.14  Score=49.84  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .+|+|+|.+|+|||||..++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998753

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.80  E-value=0.52  Score=44.44  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|+.|+|||||++.+.+.
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~   48 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGL   48 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988775

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=91.73  E-value=0.16  Score=46.66  Aligned_cols=21  Identities=29%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998875

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=91.72  E-value=1.1  Score=48.00  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=49.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc--CcEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE--AVGAFI  537 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~--ADgaIL  537 (663)
                      .|+|.|.+|+||||+++.+....+                           .++|......+..+.......  .+.+.+
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~~~g~---------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av   60 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALEDLGY---------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV   60 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHHHcCC---------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence            689999999999999998842111                           111222222233333333332  356778


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      +.|+.+...+.....++..++.       .+..+.+|.-.++
T Consensus        61 ~iD~r~~~~~~~~~~~~~~L~~-------~g~~~~iI~L~a~   95 (288)
T PRK05416         61 VIDVRSRPFFDDLPEALDELRE-------RGIDVRVLFLDAS   95 (288)
T ss_pred             EEccCchhhHHHHHHHHHHHHH-------cCCcEEEEEEECC
Confidence            8888876545566666666663       1344444555555

>cd01131 PilT Pilus retraction ATPase PilT

Probab=91.63  E-value=0.71  Score=45.91  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~  482 (663)
                      |+|+|+.|+||||+++.++...
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=91.61  E-value=0.43  Score=49.07  Aligned_cols=85  Identities=13%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      -.|+|.|..|+||||+++.++...... ....+.++ ....+.+++...+.+..-  .+...|.......++..--+|++
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iE-d~~E~~l~~~~~~~~~~~--~~~~~~~~~l~~~LR~~pD~iii  203 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIE-DPPELRLPGPNQIQIQTR--RDEISYEDLLKSALRQDPDVIII  203 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEE-SSS-S--SCSSEEEEEEE--TTTBSHHHHHHHHTTS--SEEEE
T ss_pred             eEEEEECCCccccchHHHHHhhhcccc-ccceEEec-cccceeecccceEEEEee--cCcccHHHHHHHHhcCCCCcccc
Confidence            589999999999999999998643333 12222221 111222232212222222  45556777777777755456666


Q ss_pred             EeCCCcccH
Q psy4094         539 FDVTRAATF  547 (663)
Q Consensus       539 yDVTd~~SF  547 (663)
                      -.+.+.+.+
T Consensus       204 gEiR~~e~~  212 (270)
T PF00437_consen  204 GEIRDPEAA  212 (270)
T ss_dssp             SCE-SCHHH
T ss_pred             cccCCHhHH
Confidence            666665544

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=91.38  E-value=0.79  Score=50.11  Aligned_cols=87  Identities=21%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEE-EeCCC--ccchhhhHHHHHhcCcEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL-WDIAG--QERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqI-wDTpG--QErfrsl~~~~~r~ADga  535 (663)
                      .+|+|.|..|+|||||++.+++........-++. |..  .+.+.....+.+.+ .+-.|  ...+..+....++.---.
T Consensus       163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiE-d~~--El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~  239 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIE-DTL--ELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR  239 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHHcccCCCCCEEEEC-CCc--cccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence            5899999999999999999986543322222211 111  11122211222221 11111  223456667777766666


Q ss_pred             EEEEeCCCcccHH
Q psy4094         536 FIVFDVTRAATFD  548 (663)
Q Consensus       536 ILVyDVTd~~SFe  548 (663)
                      |+|--+.+.+.+.
T Consensus       240 IivGEiR~~ea~~  252 (344)
T PRK13851        240 ILLGEMRDDAAWA  252 (344)
T ss_pred             EEEEeeCcHHHHH
Confidence            7777777665443

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=91.31  E-value=0.17  Score=48.66  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|.+|+|||||++++...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=91.30  E-value=2.2  Score=40.78  Aligned_cols=85  Identities=15%  Similarity=0.045  Sum_probs=53.6

Q ss_pred             eEEEEEEeCCCccchhhhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCC
Q psy4094         507 IIRLQLWDIAGQERFGNMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKE  583 (663)
Q Consensus       507 ~vkLqIwDTpGQErfrsl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~de  583 (663)
                      .+.+.|+|+++...  ......+  ..+|.+|+|...+ ..++..+..++..+.+.       +.++ .+|.|+.+....
T Consensus        67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~-------~~~~~gvv~N~~~~~~~  136 (169)
T cd02037          67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV-------NIPILGVVENMSYFVCP  136 (169)
T ss_pred             CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc-------CCCeEEEEEcCCcccCC
Confidence            36789999998632  2222233  5789999998665 56777777888777742       2444 588999985311


Q ss_pred             ----CCCC-CHHHHHHHHHHcCC
Q psy4094         584 ----GIAN-NPAKIDEFIKEHNF  601 (663)
Q Consensus       584 ----r~~V-s~eei~qlak~~g~  601 (663)
                          +... .....+.++..++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~  159 (169)
T cd02037         137 HCGKKIYIFGKGGGEKLAEELGV  159 (169)
T ss_pred             CCCCcccccCCccHHHHHHHcCC
Confidence                1111 22456677777664

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PLN03025 replication factor C subunit; Provisional

Probab=91.23  E-value=1.1  Score=47.66  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .+++.|++|+||||++..+...-
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999887643

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=91.21  E-value=0.8  Score=47.95  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      -|+|.|..|+||||+++.++...... ....+.++- ...+.+.+.  ..+.+.. .....|.......++.---+|++-
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~-~~~iitiEd-p~E~~~~~~--~q~~v~~-~~~~~~~~~l~~~lR~~PD~i~vg  156 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTP-EKNIITVED-PVEYQIPGI--NQVQVNE-KAGLTFARGLRAILRQDPDIIMVG  156 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECC-CceecCCCc--eEEEeCC-cCCcCHHHHHHHHhccCCCEEEec
Confidence            58999999999999999887654321 111111110 111222221  2233222 122356777777888666777888


Q ss_pred             eCCCcccHHHH
Q psy4094         540 DVTRAATFDAV  550 (663)
Q Consensus       540 DVTd~~SFe~L  550 (663)
                      .+.+.+++..+
T Consensus       157 EiR~~e~a~~~  167 (264)
T cd01129         157 EIRDAETAEIA  167 (264)
T ss_pred             cCCCHHHHHHH
Confidence            88887765543

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK01889 GTPase RsgA; Reviewed

Probab=91.21  E-value=0.21  Score=54.51  Aligned_cols=22  Identities=18%  Similarity=0.591  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      +++|+|.+|+|||||++.+++.
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            7999999999999999999874

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=91.20  E-value=0.96  Score=54.79  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFF  483 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~f  483 (663)
                      ++|.|..|+||||+++.|....+
T Consensus        40 ~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         40 YLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68999999999999998876443

>PRK03839 putative kinase; Provisional

Probab=91.17  E-value=0.18  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      +|+|+|.+|+||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988753

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=91.13  E-value=0.85  Score=49.53  Aligned_cols=87  Identities=21%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----cchhhhHHHHHhcCc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----ERFGNMTRVYYKEAV  533 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----Erfrsl~~~~~r~AD  533 (663)
                      ..+|+|.|..|+|||||++.++.........-++. |.....+....+ .+.+ +++-.++    ..+..+....++.--
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiE-d~~El~l~~~~n-~~~~-~~~~~~~~~~~~~~~~ll~~~LR~~P  236 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVE-DAREIVLSNHPN-RVHL-LASKGGQGRAKVTTQDLIEACLRLRP  236 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEec-CCCccccccCCC-EEEE-EecCCCCCcCcCcHHHHHHHHhccCC
Confidence            35899999999999999999886543333222222 111111111111 2222 2332222    235566777777655


Q ss_pred             EEEEEEeCCCcccH
Q psy4094         534 GAFIVFDVTRAATF  547 (663)
Q Consensus       534 gaILVyDVTd~~SF  547 (663)
                      -.|++--+-+.+.+
T Consensus       237 D~IivGEiR~~ea~  250 (332)
T PRK13900        237 DRIIVGELRGAEAF  250 (332)
T ss_pred             CeEEEEecCCHHHH
Confidence            56667777665433

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=91.11  E-value=0.18  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998664

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=91.01  E-value=0.17  Score=47.81  Aligned_cols=22  Identities=36%  Similarity=0.715  Sum_probs=16.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|.|.+|+|||+|+++++.
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998874

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=91.00  E-value=0.21  Score=41.96  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.+|.|+.|+|||||+..+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998764

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=91.00  E-value=0.21  Score=41.58  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|.|.+|+||||+++.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=91.00  E-value=6.2  Score=46.61  Aligned_cols=20  Identities=35%  Similarity=0.674  Sum_probs=18.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|.|..|+|||.|++.+..
T Consensus       317 L~LyG~sGsGKTHLL~AIa~  336 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGH  336 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88899999999999998875

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=90.99  E-value=0.57  Score=51.18  Aligned_cols=143  Identities=20%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh--------------CCCCC---ccccceeeeceeEEEec-CCc--------------
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH--------------QFFSP---HYRATIGVDFALKVLSW-DHE--------------  505 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg--------------~~fse---e~~~TigiDf~~ktV~v-dge--------------  505 (663)
                      .+-|+|+|-.|+||||-+-.+..              +.|..   +.-..++-......|.. .|.              
T Consensus       139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak  218 (340)
T COG0552         139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK  218 (340)
T ss_pred             cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence            47899999999999998876641              22210   00011111111222221 111              


Q ss_pred             -eeEEEEEEeCCCccch-hhh---H---HHHHhcCcE-----EEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcE
Q psy4094         506 -TIIRLQLWDIAGQERF-GNM---T---RVYYKEAVG-----AFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPC  571 (663)
Q Consensus       506 -~~vkLqIwDTpGQErf-rsl---~---~~~~r~ADg-----aILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPI  571 (663)
                       ..+.+.|+||+|.-.- ..+   .   .+.+...+.     ++++.|.+-+ +++..++.+.+.+.          + -
T Consensus       219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~----------l-~  287 (340)
T COG0552         219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG----------L-D  287 (340)
T ss_pred             HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC----------C-c
Confidence             1267999999994211 111   1   122333333     7888899875 45666555443332          1 1


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094         572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       572 ILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF  619 (663)
                      -+|.+|.|-...- .+    +..++..++. |++++-  -|+++++|-
T Consensus       288 GiIlTKlDgtAKG-G~----il~I~~~l~~-PI~fiG--vGE~~~DL~  327 (340)
T COG0552         288 GIILTKLDGTAKG-GI----ILSIAYELGI-PIKFIG--VGEGYDDLR  327 (340)
T ss_pred             eEEEEecccCCCc-ce----eeeHHHHhCC-CEEEEe--CCCChhhcc
Confidence            4788999953322 22    3346667774 666654  366666653

>smart00072 GuKc Guanylate kinase homologues

Probab=90.95  E-value=0.49  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      =|+|+|++||||+||+.+++..
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~   25 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQE   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999876

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=90.91  E-value=0.2  Score=44.92  Aligned_cols=22  Identities=41%  Similarity=0.715  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|.|.+|+|||+++++|+..
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=90.87  E-value=0.2  Score=49.66  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            7899999999999999998874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=90.79  E-value=0.19  Score=47.97  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+||||+++.+..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR03263 guanyl_kin guanylate kinase

Probab=90.75  E-value=0.2  Score=47.98  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|.+|+|||||++.++..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=90.72  E-value=0.92  Score=49.04  Aligned_cols=82  Identities=18%  Similarity=0.264  Sum_probs=46.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC---CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f---see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      .+|+|+|..|+|||||++.++....   .....-++. +..  .+.+.....  +++ .+.....+..+....++.---.
T Consensus       149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIE-d~~--El~~~~~~~--v~~-~~~~~~~~~~ll~~aLR~~PD~  222 (319)
T PRK13894        149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIE-DTG--EIQCAAENY--VQY-HTSIDVNMTALLKTTLRMRPDR  222 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEc-CCC--ccccCCCCE--EEE-ecCCCCCHHHHHHHHhcCCCCE
Confidence            5899999999999999999986431   111111111 111  111111101  222 2233345667777788776667


Q ss_pred             EEEEeCCCccc
Q psy4094         536 FIVFDVTRAAT  546 (663)
Q Consensus       536 ILVyDVTd~~S  546 (663)
                      |+|--+-+.+.
T Consensus       223 IivGEiR~~Ea  233 (319)
T PRK13894        223 ILVGEVRGPEA  233 (319)
T ss_pred             EEEeccCCHHH
Confidence            77777776543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=90.67  E-value=1.5  Score=50.63  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|-|++|+||||.++.+...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4677899999999999888753

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=90.63  E-value=3.9  Score=41.16  Aligned_cols=136  Identities=14%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      ...|++||..+.++-.|...++...-          ++..+... ...      +-+.....   .+    =...|.|+|
T Consensus        15 ~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~-a~s------LPLp~e~~---~l----RprIDlIVF   70 (176)
T PF11111_consen   15 TATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHL-AKS------LPLPSENN---NL----RPRIDLIVF   70 (176)
T ss_pred             eeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEE-ecc------CCCccccc---CC----CceeEEEEE
Confidence            57999999999999999999986311          01111111 100      00000001   01    124899999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      ++|+....|++.++.-+..+...    ..-+. ++++++-..... .+.+...++.+++..|.+ +++.+--....+...
T Consensus        71 vinl~sk~SL~~ve~SL~~vd~~----fflGK-VCfl~t~a~~~~-~~sv~~~~V~kla~~y~~-plL~~~le~~~~~~~  143 (176)
T PF11111_consen   71 VINLHSKYSLQSVEASLSHVDPS----FFLGK-VCFLATNAGRES-HCSVHPNEVRKLAATYNS-PLLFADLENEEGRTS  143 (176)
T ss_pred             EEecCCcccHHHHHHHHhhCChh----hhccc-eEEEEcCCCccc-ccccCHHHHHHHHHHhCC-CEEEeecccchHHHH
Confidence            99999999999988666554421    22234 445555544333 236888999999999996 788887766655555


Q ss_pred             HHHHHHH
Q psy4094         618 AAKTLVQ  624 (663)
Q Consensus       618 LFe~IIr  624 (663)
                      +-+.|++
T Consensus       144 lAqRLL~  150 (176)
T PF11111_consen  144 LAQRLLR  150 (176)
T ss_pred             HHHHHHH
Confidence            4444444

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=90.54  E-value=0.2  Score=52.63  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      =|+|||++|||||||++-+.|
T Consensus        31 fvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999988775

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=90.48  E-value=0.22  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988874

>KOG3929|consensus

Probab=90.43  E-value=0.065  Score=56.83  Aligned_cols=87  Identities=18%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc----C
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE----A  532 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~----A  532 (663)
                      ..+-|++.|..++  |++|+++....- ....++...+|..-...-.++..-..++|..+|-.....+...-++.    .
T Consensus        44 ~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~  120 (363)
T KOG3929|consen   44 FEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT  120 (363)
T ss_pred             ceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence            4578888888766  888888765321 23345555555322222222112237899999866544333322221    2


Q ss_pred             cEEEEEEeCCCccc
Q psy4094         533 VGAFIVFDVTRAAT  546 (663)
Q Consensus       533 DgaILVyDVTd~~S  546 (663)
                      =.+||+.|+++++.
T Consensus       121 ~slIL~LDls~p~~  134 (363)
T KOG3929|consen  121 FSLILVLDLSKPND  134 (363)
T ss_pred             hhheeeeecCChHH
Confidence            35688999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=90.41  E-value=0.23  Score=48.93  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=90.39  E-value=1.2  Score=43.67  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -.|+|+|..|+|||||++.+++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37999999999999999988864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	663
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		9e-27
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		6e-26
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-25
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-25
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		6e-25
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		6e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-25
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-24
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-24
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-24
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-24
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		9e-24
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-23
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-23
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-23
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-23
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-23
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-23
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-22
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-22
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-22
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-22
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-22
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-22
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-22
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-22
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-22
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-22
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		8e-22
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-21
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-21
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-21
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-21
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-21
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-21
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-21
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-21
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		7e-21
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-21
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-21
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-20
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-20
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-20
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-20
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-20
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-20
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-20
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-20
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-19
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-19
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-19
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-19
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-19
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-19
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-19
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-19
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-19
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-19
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-19
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-19
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		9e-19
2efc_B	181	Ara7-GdpATVPS9A Length = 181		9e-19
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-18
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-18
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-18
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-18
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-18
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-18
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-18
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-18
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-18
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		8e-18
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		9e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-17
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-17
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		9e-17
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		9e-17
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-16
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-16
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-16
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-16
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-16
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-16
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-16
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-16
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-16
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		4e-16
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-16
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-16
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		9e-16
1byu_A	216	Canine Gdp-Ran Length = 216		9e-16
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-15
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-15
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		8e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-14
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-14
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-14
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-14
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-14
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-14
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		5e-14
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		9e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-13
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		4e-13
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-13
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-12
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-12
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-12
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-12
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-12
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-12
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-11
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-10
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-09
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-09
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-08
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-08
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-08
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-08
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-08
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-08
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-08
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-08
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-08
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-08
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-08
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-08
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-08
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-08
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-08
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-08
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-08
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-08
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-08
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-08
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-08
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		5e-08
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		6e-08
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-08
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-08
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-08
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-08
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-08
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-08
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-08
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-08
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-07
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-07
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-07
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-07
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-07
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-07
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-07
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-07
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-07
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-07
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-07
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-07
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-07
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		9e-07
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-06
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-06
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-06
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-06
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-06
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-06
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-06
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-05
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-05
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-04
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-04
1mh1_A	186	Small G-Protein Length = 186		2e-04
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-04
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-04
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-04
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-04
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		4e-04
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-04
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-04
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		6e-04
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		7e-04
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		8e-04
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		8e-04
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		8e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		9e-04
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		9e-04

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  118 bits (296), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  + ++L+K+L+IG  G GK+ ++ R+    ++  Y +TIGVDF +K +  D +T+ +L
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ + G  IV+DVT   +F+ V  W Q++D   T    + + 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVL 115
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            +L+ NKCD + K  +  + AK  EF  + N   + ETSA D+ N++DA  T+ ++I E+
Sbjct: 116 KLLVGNKCDLKDKRVVEYDVAK--EF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 172
Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
              Q   ++    E   ++N   Q   N   C C
Sbjct: 173 MSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++++K+L+IG    GKTS + RY    F+P + +T+G+DF +K + + HE  ++LQ+WD 
Sbjct: 21  DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEKRVKLQIWDT 79
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ A+G  +++D+T   +F+AV    QD   ++     +    +L+ 
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAV----QDWATQIKTYSWDNAQVILVG 135
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NKCD  +E +   P +  + + E     +FE SAK+NI++  A + LV  I +
Sbjct: 136 NKCDMEEERVV--PTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ L K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K +  D + ++ +
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ A    +VFDVT   TF  +  W+ +   + +  D    P
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            V+L NK D     +A   A+   +    N   +FETSAK+ IN++ A +T+ +  L   
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL--- 174
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           K +   + +        L++N +   +  +C+C
Sbjct: 175 KQETEVELYNEFPEPIKLDKNERAKASAESCSC 207

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ L K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K +  D + ++ +
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ A    +VFDVT   TF  +  W+ +   + +  D    P
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            V+L NK D     +A   A+   +    N   +FETSAK+ IN++ A +T+ +  L   
Sbjct: 120 FVVLGNKIDFENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL--- 174
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           K +   + +        L++N +   +  +C+C
Sbjct: 175 KQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ L K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K +  D + ++ +
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ A    +VFDVT   TF  +  W+ +   + +  D    P
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            V+L NK D     +A   A+   +    N   +FETSAK+ IN++ A +T+ +  L+ +
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/214 (34%), Positives = 120/214 (56%), Gaps = 9/214 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  + ++L+K+L+IG  G GK+ ++ R+    ++  Y +TIGVDF +K +  D +T+ +L
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ + G  IV+DVT   +F+ V  W Q++D   T    + + 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVL 115
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            +L+ NKCD + K  +  + AK  EF  + N   + ETSA D+ N++DA  T+ ++I E+
Sbjct: 116 KLLVGNKCDLKDKRVVEYDVAK--EF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 172
Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
              Q   ++    E   ++N   Q   N     C
Sbjct: 173 MSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 116/213 (54%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ L K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K +  D + ++ +
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AG ERF ++   +Y+ A    +VFDVT   TF  +  W+ +   + +  D    P
Sbjct: 60  QIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            V+L NK D     +A   A+   +    N   +FETSAK+ IN++ A +T+ +  L   
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL--- 174
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           K +   + +        L++N +   +  +C+C
Sbjct: 175 KQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++++KIL+IG    GKTS + RY    F+P + +T+G+DF +K + + ++  I+LQ+WD 
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ A+G  +++D+T   +F+AV    QD   ++     +    +L+ 
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAV----QDWSTQIKTYSWDNAQVLLVG 117
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NKCD   E + +  ++    + +H    +FE SAKDNIN+    + LV  I E
Sbjct: 118 NKCDMEDERVVS--SERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  112 bits (281), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 9/175 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG  G GK+ ++ R+    ++  Y +TIGVDF +K +  D +T+ +LQ+WD 
Sbjct: 19  DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KLQIWDT 77
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ + G  IV+DVT   +F+ V  W Q++D   T    + +  +L+ 
Sbjct: 78  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVG 133
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           NKCD + K  +  + AK  EF  + N   + ETSA D+ N++DA  T+ ++I E+
Sbjct: 134 NKCDLKDKRVVEYDVAK--EF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 185

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           +P   ++++K+L+IG    GKTS + RY    F+P + +T+G+DF +K + + H+  I+L
Sbjct: 15  VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-YRHDKRIKL 73
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQER+  +T  YY+ A+G  +++D+    +F AV    QD   ++     +   
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV----QDWATQIKTYSWDNAQ 129
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            +L+ NKCD   E +   PA+    + +     +FE SAK+NIN+    + LV  I E
Sbjct: 130 VILVGNKCDLEDERVV--PAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 106/183 (57%), Gaps = 4/183 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ + K++++G+ G GKTS++ RYV+  +S  Y+ATIG DF  K ++ D + +  +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ A    +V+DVT A++F+ +  W+ +      +      P
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 571 CVLLANKCD--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            V+L NK D  + K+ ++   A+  E  K       F TSAK+ IN+D A + + +  L+
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQ--ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
Query: 629 NDK 631
            ++
Sbjct: 179 QNQ 181

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 108/177 (61%), Gaps = 9/177 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  + ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +S +++T+ +L
Sbjct: 2   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTV-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ A G  IV+DVT   +FD V +W Q++D +  + + N + 
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID-RYAMENVNKL- 118
Query: 571 CVLLANKCDQ-PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
             L+ NKCD   K  + ++  +  E    H    + ETSAK+  N++ A  T+  +I
Sbjct: 119 --LVGNKCDLVSKRVVTSDEGR--ELADSHGIK-FIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 7/178 (3%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S M  + ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI 
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI- 65
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           +LQ+WD AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----EN 121
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           +  +L+ NKCD   + + +      EF        + ETSAK+  N++ +  T+  +I
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTA-KEFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 177

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M    + L+K+L+IG+ G GK+S++ R+    FS  Y  TIGVDF ++ +  + E + +L
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+   G  +V+DVT A +F  V +W  +++        + + 
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVC 115
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQK 625
            +L+ NK D P+        K+ E    + F+G      FETSAK+N+N+++    + + 
Sbjct: 116 RILVGNKNDDPER-------KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168
Query: 626 ILENDK 631
           +L   K
Sbjct: 169 VLRAKK 174

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 104/175 (59%), Gaps = 15/175 (8%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG+ G GKT ++ R+    F+  + +TIG+DF ++ +  D + I +LQ+WD 
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KLQIWDT 62
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ A+G  +V+D+T   +FD +  W ++++   +      +  ++L 
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILG 118
Query: 576 NKCD-QPKEGIANNPAK---IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NKCD   K  ++    +   +D  IK      + ETSAK NIN+++A  TL + I
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIK------FMETSAKANINVENAFFTLARDI 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  108 bits (271), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 15/180 (8%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M    ++L+K+L+IG+ G GKT ++ R+    F+  + +TIG+DF ++ +  D + I +L
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ A+G  +V+D+T   +FD +  W ++++   +      + 
Sbjct: 60  QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVE 115
Query: 571 CVLLANKCD-QPKEGIANNPAK---IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            ++L NKCD   K  ++    +   +D  IK      + ETSAK NIN+++A  TL + I
Sbjct: 116 KMILGNKCDVNDKRQVSKERGEKLALDYGIK------FMETSAKANINVENAFFTLARDI 169

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 7/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++ +KIL+IG    GKTS + RY    F+P + +T+G+DF +K + + ++  I+LQ+WD 
Sbjct: 6   DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDT 64
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AG ER+  +T  YY+ A G  + +D+T   +F+AV    QD   ++     +    +L+ 
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAV----QDWSTQIKTYSWDNAQVLLVG 120
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NKCD   E + ++       + +H    +FE SAKDNIN+    + LV  I E
Sbjct: 121 NKCDXEDERVVSSERGRQ--LADHLGFEFFEASAKDNINVKQTFERLVDVICE 171

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S M  + ++L+K+L+IG+ G GK  ++ R+    ++  Y +TIGVDF ++ +  D +TI 
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI- 65
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           +LQ+WD AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----EN 121
Query: 569 IPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           +  +L+ NKCD   K+ +    AK  EF        + ETSAK+  N++ +  T+  +I
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 177

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           P   +F  ++++IG  G GKTS+++R+    F    ++T+GVDF +K +    + I RLQ
Sbjct: 20  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RLQ 78
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQERF ++T  YY+ A G  +V+D+T+  TFD + KW + +D K    D      
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAE---L 134
Query: 572 VLLANK--CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           +L+ NK  C+  +E       K  + I    F    E SAKDN N+D+    LV  IL+
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFC---EASAKDNFNVDEIFLKLVDDILK 190

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+WD 
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I  +L+ 
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH---ADSN-IVIMLVG 117
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NK D +    +  + A+   F +++N S + ETSA D+ N+++A K ++ +I
Sbjct: 118 NKSDLRHLRAVPTDEAR--AFAEKNNLS-FIETSALDSTNVEEAFKNILTEI 166

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +LQ+WD 
Sbjct: 23  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDT 81
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      +  +L+ 
Sbjct: 82  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVG 137
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NKCD   K+ +    AK  EF        + ETSAK+  N++ +  T+  +I
Sbjct: 138 NKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +LQ+WD 
Sbjct: 4   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDT 62
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      +  +L+ 
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVG 118
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NKCD   K+ +    AK  EF        + ETSAK+  N++ +  T+  +I
Sbjct: 119 NKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 167

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 447 PYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
           P S    + ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +T
Sbjct: 22  PXSSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT 81
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
           I +LQ+WD AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +    
Sbjct: 82  I-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS---- 136
Query: 567 NPIPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
             +  +L+ NKCD   K+ +    AK  EF        + ETSAK+  N++ +  T   +
Sbjct: 137 ENVNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFXTXAAE 193
Query: 626 I 626
           I
Sbjct: 194 I 194

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +LQ+WD AG
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDTAG 64
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      +  +L+ NK
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNK 120
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   K+ +    AK  EF        + ETSAK+  N++ +  T+  +I
Sbjct: 121 CDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 167

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           MP+  ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +L
Sbjct: 3   MPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ A G  +V+DVT   ++  V +W Q++D   +      + 
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVN 116
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            +L+ NK D   K+ + N  AK  EF        + ETSAK+  N++ A  T+  +I
Sbjct: 117 KLLVGNKSDLTTKKVVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAFMTMAAEI 170

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KIL+IGE G GK+S++ R+    F P   ATIGVDF +K +S D     +L +WD AGQE
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA-KLAIWDTAGQE 75
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF  +T  YY+ A G  +V+DVTR  TF  +  W  +L+   T    N I   L+ NK D
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNXLVGNKID 132
Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           +    +  N     +F ++H+   + E SAK    +  A + LV+KI++
Sbjct: 133 KENREVDRNEGL--KFARKHS-XLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           MP+  ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +L
Sbjct: 3   MPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ A G  +V+DVT   ++  V +W Q++D   +      + 
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVN 116
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            +L+ NK D   + + +N     EF        + ETSAK+  N++ A  T+  +I
Sbjct: 117 KLLVGNKSDLTTKKVVDNTTA-KEFADSLGIP-FLETSAKNATNVEQAFMTMAAEI 170

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           D+ ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 82
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AGQER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I  +
Sbjct: 83  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIM 138
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           L+ NK D     +   P        E N   + ETSA D+ N++ A +T++ +I
Sbjct: 139 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +L+K ++IG+ G GK+ ++ ++  + F P +  TIGV+F  ++++ D + I +LQ+WD A
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI-KLQIWDTA 78
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQE F ++TR YY+ A GA +V+D+TR  TF+ +  W +D     +    + +  +L+ N
Sbjct: 79  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGN 134
Query: 577 KCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA----AKTLVQKI 626
           K D + +  +       + F +EH    + ETSAK   N+++A    AK + +KI
Sbjct: 135 KSDLESRRDVKREEG--EAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKI 186

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 103/177 (58%), Gaps = 9/177 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  + ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +L
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      + 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVN 115
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            +L+  KCD   K+ +    AK  EF        + ETSAK+  N++ +  T+  +I
Sbjct: 116 KLLVGIKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 169

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 447 PYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
           P   M D  +FL+KI++IG  G GKT +++R+    F P   ATIGVDF +K +  + E 
Sbjct: 16  PRGSMED-YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            ++LQ+WD AGQERF ++T+ YY+ A    + +D+T   +F  + +W ++++   +    
Sbjct: 75  -VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS---- 129
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID----DAAKTL 622
           N +  VL+ NK D  +    +   + +EF +  +   + ETSAK++ N++    D A  L
Sbjct: 130 NKVITVLVGNKIDLAERREVSQ-QRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRL 187
Query: 623 VQKILENDKV 632
           + +  +N  V
Sbjct: 188 ISEARQNTLV 197

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+WD 
Sbjct: 18  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 76
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I  +L+ 
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIMLVG 132
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NK D +    +  + A+      E N   + ETSA D+ N++ A +T++ +I
Sbjct: 133 NKSDLRHLRAVPTDEARA---FAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 98/168 (58%), Gaps = 9/168 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +LQ+WD AGQE
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDTAGQE 59
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      +  +L+ NKCD
Sbjct: 60  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCD 115
Query: 580 -QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
              K+ +    AK  EF        + ETSAK+  N++ +  T+  +I
Sbjct: 116 LTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 160

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           D  ++L+KI++IG+ G GK++++ R+    F+   ++TIGV+FA K +   +  II+ Q+
Sbjct: 2   DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AGQER+  +T  YY+ AVGA +V+D+T+  +F+ + KW ++L       D N I  +
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNA---DSN-IVIL 117
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           L+ NK D     + N+     ++ K+   + + ETSA +  N++ A   L+ +I
Sbjct: 118 LVGNKSDLKHLRVIND-NDATQYAKKEKLA-FIETSALEATNVELAFHQLLNEI 169

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           D+ ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 82
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AG ER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I  +
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIM 138
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           L+ NK D     +   P        E N   + ETSA D+ N++ A +T++ +I
Sbjct: 139 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           D+ ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 61
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AG ER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I  +
Sbjct: 62  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIM 117
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           L+ NK D     +   P        E N   + ETSA D+ N++ A +T++ +I
Sbjct: 118 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 101/168 (60%), Gaps = 7/168 (4%)
Query: 452 PDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           PD++ +FL+K++++G+   GKT +++R+    FS    +TIGVDF +K L    + + +L
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV-KL 80
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T+ YY+ A GA + +D+T+ ++F +V  W +D    V    G+ I 
Sbjct: 81  QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED----VRKYAGSNIV 136
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618
            +L+ NK D   E    + A+     + ++     ETSAKD+ N+++A
Sbjct: 137 QLLIGNKSD-LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 100/173 (57%), Gaps = 9/173 (5%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +L+K ++IG+ G GK+ ++ ++  + F P +  TIGV+F  ++++ D + I +LQ+WD A
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQI-KLQIWDTA 67
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQE F ++TR YY+ A GA +V+D+TR  TF+ +  W +D          + +  +L+ N
Sbjct: 68  GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQH----SNSNMVIMLIGN 123
Query: 577 KCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           K D + +  +       + F +EH    + ETSAK   N+++A     ++I E
Sbjct: 124 KSDLESRREVKKEEG--EAFAREHGLI-FMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 15/175 (8%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           F++K+++IGE G GKT+++ R+    FS   R TIGV+F+ + +       ++ Q+WD A
Sbjct: 24  FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTA 82
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL--DAKVTLPDGNPIPCVLL 574
           G ER+  +T  YY+ AVGA +VFD+T+  T+  V +W ++L   A+ T      I  +L+
Sbjct: 83  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT------IVVMLV 136
Query: 575 ANKCD--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            NK D  Q +E     P +      E+N   + ETSA D+ N++ A +T++++I 
Sbjct: 137 GNKSDLSQARE----VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           P    +++K ++IG++G GK+ ++ ++  + F      TIGV+F  +++    + I +LQ
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KLQ 67
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQERF  +TR YY+ A GA +V+D+TR +T++ +  W  D      L + N +  
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-I 123
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           +L+ NK D + +  +    AK  +F +E+    + E SAK   N++DA     +KI +N
Sbjct: 124 ILIGNKADLEAQRDVTYEEAK--QFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 15/175 (8%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           F++K+++IGE G GKT+++ R+    FS   R TIGV+F+ + +       ++ Q+WD A
Sbjct: 9   FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTA 67
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL--DAKVTLPDGNPIPCVLL 574
           G ER+  +T  YY+ AVGA +VFD+T+  T+  V +W ++L   A+ T      I  +L+
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT------IVVMLV 121
Query: 575 ANKCD--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            NK D  Q +E     P +      E+N   + ETSA D+ N++ A +T++++I 
Sbjct: 122 GNKSDLSQARE----VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
           D+ ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+
Sbjct: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 64
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AG ER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I   
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIX 120
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           L+ NK D     +   P        E N   + ETSA D+ N++ A +T++ +I
Sbjct: 121 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           P    +++K ++IG++G GK+ ++ ++  + F      TIGV+F  +++    + I +LQ
Sbjct: 24  PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KLQ 82
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQ RF  +TR YY+ A GA +V+D+TR +T++ +  W  D      L + N +  
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-I 138
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           +L+ NK D + +  +    AK  +F +E+    + E SAK   N++DA     +KI +N
Sbjct: 139 ILIGNKADLEAQRDVTYEEAK--QFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQN 194

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 20/220 (9%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           + L+KI++IG+ G GK++++ R+    F+   ++TIGV+FA + L  + + I + Q+WD 
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KAQIWDT 69
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA IV+D++++++++    W  +L       D N +   L+ 
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN---ADDN-VAVGLIG 125
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN-DKVQA 634
           NK D     +   P +  +   + N   + ETSA ++ N+D A + L+  I +   K Q 
Sbjct: 126 NKSDLAH--LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQM 183
Query: 635 N-GDSHATSEA---------VFSLNRNSQETK--NGRNCA 662
           + GDS A   A           SL     E K  NG NC 
Sbjct: 184 DLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 98.6 bits (244), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+WD 
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AG ER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I   L+ 
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIXLVG 117
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NK D     +   P        E N   + ETSA D+ N++ A +T++ +I
Sbjct: 118 NKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------- 506
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + ++ +          
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AGQERF ++T  ++++A+G  ++FD+T   +F  V  W   L A       
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-- 140
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NP   VL+ NK D P +   N   +  E   ++    +FETSA    N++ A +TL+  I
Sbjct: 141 NP-DIVLIGNKADLPDQREVNE-RQARELADKYGIP-YFETSAATGQNVEKAVETLLDLI 197
Query: 627 LE 628
           ++
Sbjct: 198 MK 199

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 21/180 (11%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+K LVIG  G GK+ ++ +++   F      TIGV+F  +V++   +T+ +LQ+WD 
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV-KLQIWDT 81
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF ++TR YY+ A GA +V+D+T   T++++  W  D     TL   N I  +L  
Sbjct: 82  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR---TLASPN-IVVILCG 137
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDA----AKTLVQKI 626
           NK D        +P +   F++   F+      + ETSA    N+++A    A+T++ KI
Sbjct: 138 NKKDL-------DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 7/177 (3%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M +  +FL+K LVIG  G GK+ ++ +++ + F      TIGV+F  K+++   +  ++L
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKL 61
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++TR YY+ A GA +V+D+T   T++A+  W  D      +     I 
Sbjct: 62  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIV 117
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            +L  NK D   +       +   F +E+    + ETSA    N+++A     +KIL
Sbjct: 118 IILCGNKKDLDADREVTF-LEASRFAQENELM-FLETSALTGENVEEAFVQCARKIL 172

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++ +GE   GKTSII R+ +  F  +Y++TIG+DF  K L  D E  +RLQLWD AGQ
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQ 60
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   Y +++  A +V+D+T   +F+   KW QD    +    G  +   L+ NK 
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQD----ILNERGKDVIIALVGNKT 116
Query: 579 D 579
           D
Sbjct: 117 D 117

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQLWD AG
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQLWDTAG 78
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A+G  +V+DVT   TF  + +W + ++        +    +L+ NK
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 134
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
            D     +  +    +   KE     + E+SAK++ N+++   TL + I E  K+ +N
Sbjct: 135 SDMETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 187

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + +D +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AG ERF ++T  ++++A+G  ++FD+T   +F  V  W   L A       
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NP   VL+ NK D P +   N   +  E  +++    +FETSA    N++ + +TL+  I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183
Query: 627 LE 628
           ++
Sbjct: 184 MK 185

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 9/183 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVH-QFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           D  +  +K++++G+ G GKT ++ R+    F +  + +T+G+DF  KVL  D    ++LQ
Sbjct: 5   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG-VKVKLQ 63
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQERF ++T  YY++A    +++DVT  A+FD +  W  ++         + +  
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVAL 119
Query: 572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           +LL NK D   E +       ++  KE+    + ETSAK  +N+ D A T + K L+   
Sbjct: 120 MLLGNKVDSAHERVVKREDG-EKLAKEYGLP-FMETSAKTGLNV-DLAFTAIAKELKRRS 176
Query: 632 VQA 634
           ++A
Sbjct: 177 MKA 179

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           E   K++V+G    GK+S+I+RY    F+  Y+ TIGVDF  + +  + E + RL LWD 
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV-RLMLWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQE F  +T+ YY+ A    +VF  T   +F+A+  W++ + A+V       IP  L+ 
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQ 116
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NK D   +    N     E + +     ++ TS K+++N+ +  K L +K L+
Sbjct: 117 NKIDLLDDSCIKNEEA--EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           +L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +TI +LQ+WD AGQER
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDTAGQER 59
Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           F  +T  YY+ A G  +V+DVT   +F+ V +W Q++D   +      +  +L+ NKCD
Sbjct: 60  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCD 114

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + +D +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AG ERF ++T  ++++A+G  ++FD+T   +F  V  W   L A       
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NP   VL+ NK D P +   N   +  E  +++    +FETSA    N++ + +TL+  I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183
Query: 627 LE 628
           ++
Sbjct: 184 MK 185

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQLWD AG
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQLWDTAG 65
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A+G  +V+DVT   TF  + +W + ++        +    +L+ NK
Sbjct: 66  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 121
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
            D     +  +    +   KE     + E+SAK++ N+++   TL + I E  K+ +N
Sbjct: 122 SDMETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 174

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+KI+++G+ G GK+S++ RYV   F      TIGV+F  K L  D    + +Q+WD AG
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAG 69
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++   +Y+ +    + F V  + +F  +  WK++      + +    P V+L NK
Sbjct: 70  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 129
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            D  +  ++   A+   + K++    +FETSAKD+ N+  A +  V++IL
Sbjct: 130 TDIKERQVSTEEAQ--AWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  TI RLQLWD AGQ
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTI-RLQLWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 66  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 121
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
              D+ +  I     K     KE N   + ETSAK   N+
Sbjct: 122 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 156

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           +P  R  ++KI+VIG+   GKT +  R+    F     ATIGVDF  + +  D E  I++
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER-IKI 80
Query: 511 QLWDIAGQERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI 569
           QLWD AGQERF  +M + YY+       V+D T  A+F ++  W ++    +     N I
Sbjct: 81  QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL---ANDI 137
Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK---DNINIDDAAKTLVQKI 626
           P +L+ NKCD         P  + +   + +    FETSAK   DN +++    TL  K+
Sbjct: 138 PRILVGNKCDL--RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+K LVIG  G GK+ ++ +++ + F      TIGV+F  K+++   +  ++LQ+WD 
Sbjct: 9   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDT 67
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF ++TR YY+ A GA +V+D+T   T++A+  W  D      +     I  +L  
Sbjct: 68  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCG 123
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           NK D   +       +   F +E+    + ETSA    ++++A     +KIL
Sbjct: 124 NKKDLDADREVTF-LEASRFAQENELM-FLETSALTGEDVEEAFVQCARKIL 173

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  TI RLQLWD AG 
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTI-RLQLWDTAGL 72
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 73  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 128
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
              D+ +  I     K     KE N   + ETSAK   N+
Sbjct: 129 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 163

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + +D +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AG ERF ++T  ++++A G  + FD+T   +F  V  W   L A       
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NP   VL+ NK D P +   N   +  E  +++    +FETSA    N++ + +TL+  I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQLWD AG
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQLWDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A G  +V+DVT   TF  + +W + ++        +    +L+ NK
Sbjct: 62  QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
            D     +  +    +   KE     + E+SAK++ N+++   TL + I E  K+ +N
Sbjct: 118 SDXETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQ+WD AG
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A+G  +V+D+T   TF  + +W + ++        +    +L+ NK
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
            D     +  +    +   KE     + E+SAK++ N+++   TL + I E  K+ +N
Sbjct: 118 SDMETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + +D +          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AG ERF ++T  ++++A G  + FD+T   +F  V  W   L A       
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           NP   VL+ NK D P +   N   +  E  +++    +FETSA    N++ + +TL+  I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R  ++KI+VIG+   GKT +  R+    F     ATIGVDF  + +  D E  I++QLWD
Sbjct: 17  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER-IKIQLWD 75
Query: 515 IAGQERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573
            AGQERF  +M + YY+       V+D+T  A+F ++  W ++    +     N IP +L
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL---ANDIPRIL 132
Query: 574 LANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK---DNINIDDAAKTLVQKI 626
           + NKCD  +  I        +F   H+    FETSAK   DN +++    TL  K+
Sbjct: 133 VGNKCDL-RSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ RLQLWD AGQ
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 73
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD----VRTERGSDVIIMLVGNKT 129
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
           D   K  ++      +   KE N   + ETSAK   N+
Sbjct: 130 DLSDKRQVSTEEG--ERKAKELNVM-FIETSAKAGYNV 164

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 7/121 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++GAGK+S++ R+V   F     +TIG  F  + L+ +  T+ + ++WD AGQE
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQE 72
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLANKC 578
           R+ ++  +YY+ A  A IVFDVT  A+F+   KW Q+L A+     GNP +   L  NK 
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKS 127
Query: 579 D 579
           D
Sbjct: 128 D 128

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G+ G GK+S++ RYV   F      TIGV+F  K L  D    + +Q+WD AG
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAG 65
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++   +Y+ +    + F V  + +F  +  WK++      + +    P V+L NK
Sbjct: 66  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            D  +  ++   A+   + +++    +FETSAKD  N+  A +  V+++L
Sbjct: 126 IDISERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQ+WD AG
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A G  +V+D+T   TF  + +W + ++        +    +L+ NK
Sbjct: 62  QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
            D     +  +    +   KE     + E+SAK++ N+++   TL + I E  K+ +N
Sbjct: 118 SDXETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G+ G GK+S++ RYV   F      TIGV+F  K L  D    + +Q+WD AG
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAG 67
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++   +Y+ +    + F V  + +F  +  WK++      + +    P V+L NK
Sbjct: 68  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 127
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            D  +  ++   A+   + +++    +FETSAKD  N+  A +  V+++L
Sbjct: 128 IDISERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ RLQLWD AG 
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGL 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 66  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 121
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
              D+ +  I     K     KE N   + ETSAK   N+
Sbjct: 122 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 156

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ RLQLWD AG 
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGL 75
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 131
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
              D+ +  I     K     KE N   + ETSAK   N+
Sbjct: 132 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 166

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M    ++L+KI++IG+ G GK++++ R+    F+   ++TIGV+FA + +  +++ I + 
Sbjct: 3   MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKI-KA 61
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AG ER+  +T  YY+ AVGA IV+D++++++++    W  +L       D N + 
Sbjct: 62  QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELREN---ADDN-VA 117
Query: 571 CVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
             L+ NK D      +  + AK   F  E+    + ETSA ++ N+D A + L+  I +
Sbjct: 118 VGLIGNKSDLAHLRAVPTDEAK--NFAMENQML-FTETSALNSDNVDKAFRELIVAIFQ 173

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+K LVIG  G GK+ ++ +++ + F      TIGV+F  K+++   +  ++LQ+WD 
Sbjct: 6   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDT 64
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AG ERF ++TR YY+ A GA +V+D+T   T++A+  W  D      +     I  +L  
Sbjct: 65  AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCG 120
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           NK D   +       +   F +E+    + ETSA    ++++A     +KIL
Sbjct: 121 NKKDLDADREVTF-LEASRFAQENELM-FLETSALTGEDVEEAFVQCARKIL 170

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 9/172 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YKI++ G+   GK+S + R     F  +  AT+GVDF +K L  D E  + LQLWD AGQ
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV-LQLWDTAGQ 87
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++ + Y+++A G  +++DVT   +F  + +W   ++          +P +L+ NK 
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH----ETVPIMLVGNKA 143
Query: 579 D----QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D       EG    P    E +     + + ETSAKD  NI +A   L +++
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 3/173 (1%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           +  L K++++G+ G GK+S++ RYV   F      TIGV+F  + L  D    + LQ+WD
Sbjct: 4   KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGR-FVTLQIWD 62
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
            AGQERF ++   +Y+ A    + F V    +F+ +  W+++      + D    P V+L
Sbjct: 63  TAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            NK D+    +    A+   +  E+    + ETSAKD+ N+  A +  V+++L
Sbjct: 123 GNKVDKEDRQVTTEEAQT--WCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 10/160 (6%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETIIRLQ 511
           ++RE  YKI +IG+ G GKT+ I R +   F  +Y AT+G V+  +  L  D   +I+  
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD-DQGNVIKFN 64
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQE+   +  VYY  A GA + FDVT   T   + +W ++  A V    GN  P 
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPI 120
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610
           V+ ANK D + ++ I+     + E +K  N+  +FE SAK
Sbjct: 121 VVCANKIDIKNRQKISKKL--VMEVLKGKNYE-YFEISAK 157

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ RLQLWD AGQ
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 62  ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKT 117
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           D   K  I       ++  KE +   + ETSAK   N+    + +   +LE
Sbjct: 118 DLADKRQITIEEG--EQRAKELSVM-FIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++GE   GK+SI+ R+V   F+ +   TIG  F  + ++ +  T+ + ++WD AGQE
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTV-KFEIWDTAGQE 63
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF ++   YY+ A  A +V+DVT+  +F     W ++L  + +      I   L+ NK D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKID 119
Query: 580 QPKEGIANNPAKID-EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
             +EG     A+ + E + E     +FETSAK   N++D    + +KI
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ RLQLWD AGQ
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 60
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   Y +++  A +V+D+T   +F    KW  D    V    G+ +  +L+ NK 
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 116
Query: 579 D 579
           D
Sbjct: 117 D 117

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R + +K++++GE   GKTS++ RY    F+  +  T+G  F  K L+   + +  L +WD
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV-NLAIWD 61
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
            AGQERF  +  +YY+++ GA +V+D+T   +F  V  W ++L   +    GN I   ++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 117
Query: 575 ANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            NK D  KE    I    +  +    +H     + TSAK N  I++    L ++++E
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKH-----YHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V    +   I+  +WD AGQ
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQ 74
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 129
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D     +    AK   F ++ N   +++ SAK N N +     L +K++
Sbjct: 130 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLI 174

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 13/170 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K+ ++G+ G GK+SI+ R+V   F P+   TIG  F  K + + +E + +  +WD AGQE
Sbjct: 7   KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA-NKC 578
           RF  +  +YY+ +  A IV+D+T+  TF  +  W ++L        G P   V +A NKC
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNKC 120
Query: 579 D--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D    +E +  +     + I     + + ETSAK+ INI++    + ++I
Sbjct: 121 DLTDVREVMERDAKDYADSIH----AIFVETSAKNAININELFIEISRRI 166

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 117
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 118 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS-WDHETIIRLQLWDIAG 517
           +K++++G+ G GKT+ +KR++   F   Y ATIGV+  +  LS + +   I+  +WD AG
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE--VHPLSFYTNFGEIKFDVWDTAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
            E+FG +   YY  A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK
Sbjct: 64  LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVC----ENIPIVLCGNK 118
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
            D  +  +    AK   F ++ N   +++ SAK N N +     L +K+  N +++
Sbjct: 119 VDVKERKVK---AKTITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLAGNPQLE 170

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS-WDHETIIRLQLWDIAG 517
           +K++++G+ G GKT+ +KR++   F   Y ATIGV+  +  LS + +   I+  +WD AG
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE--VHPLSFYTNFGEIKFDVWDTAG 62
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
            E+FG +   YY  A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK
Sbjct: 63  LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVC----ENIPIVLCGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
            D  +  +    AK   F ++ N   +++ SAK N N +     L +K+  N +++
Sbjct: 118 VDVKERKVK---AKTITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLAGNPQLE 169

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R + +K++++GE   GKTS++ RY    F+  +  T+   F  K L+   + +  L +WD
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRV-NLAIWD 61
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
            AGQERF  +  +YY+++ GA +V+D+T   +F  V  W ++L   +    GN I   ++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 117
Query: 575 ANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            NK D  KE    I    +  +    +H     + TSAK N  I++    L ++++E
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKH-----YHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R + +K++++GE   GKTS++ RY    F+  +  T+   F  K L+   + +  L +WD
Sbjct: 17  RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRV-NLAIWD 75
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
            AGQERF  +  +YY+++ GA +V+D+T   +F  V  W ++L   +    GN I   ++
Sbjct: 76  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 131
Query: 575 ANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            NK D  KE    I    +  +    +H     + TSAK N  I++    L ++++E
Sbjct: 132 GNKIDLEKERHVSIQEAESYAESVGAKH-----YHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y  T+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS-WDHETIIRLQLWDIAG 517
           +K++++G+ G GKT+ +KR++   F   Y ATIGV+  +  LS + +   I+  +WD AG
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE--VHPLSFYTNFGEIKFDVWDTAG 70
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
            E+FG +   YY  A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK
Sbjct: 71  LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVC----ENIPIVLCGNK 125
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
            D  +  +    AK   F ++ N   +++ SAK N N +     L +K+  N +++
Sbjct: 126 VDVKERKVK---AKTITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLAGNPQLE 177

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AG 
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGL 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 120
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 121 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 171

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AG 
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGL 71
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 126
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 127 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 177

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE---------T 506
           ++L K L +G+ G GKTS++ +Y    F+  +  T+G+DF  K + +             
Sbjct: 9   DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            I LQLWD AG ERF ++T  ++++A+G  ++FD+T   +F  V  W   L         
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY--SE 126
Query: 567 NPIPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
           NP   VL  NK D + +  +    A+  E  +++    +FETSA +  NI  A + L+  
Sbjct: 127 NP-DIVLCGNKSDLEDQRAVKEEEAR--ELAEKYGIP-YFETSAANGTNISHAIEMLLDL 182
Query: 626 ILE 628
           I++
Sbjct: 183 IMK 185

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K+ ++G+ G GK+SI+ R+V   F  +   TIG  F  K +   +E + +  +WD AGQE
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE-LHKFLIWDTAGQE 83
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF ++  +YY+ +  A IV+D+T+  +F  + KW ++L  K   P+   I   +  NKCD
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL--KEHGPEN--IVMAIAGNKCD 139
Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
                I   P K  +   E   +   ETSAK+ INI++  + + ++I
Sbjct: 140 LSD--IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E++G +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++       Y AT+GV+    V    +   I+  +WD AGQ
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQ 74
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 129
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D     +    AK   F ++ N   +++ SAK N N +     L +K++
Sbjct: 130 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLI 174

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K+ ++G+ G GK+SI+ R+V   F P+   TIG  F  K + + +E + +  +WD AG E
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGLE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA-NKC 578
           RF  +  +YY+ +  A IV+D+T+  TF  +  W ++L        G P   V +A NKC
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNKC 121
Query: 579 D--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D    +E +  +     + I     + + ETSAK+ INI++    + ++I
Sbjct: 122 DLTDVREVMERDAKDYADSIH----AIFVETSAKNAININELFIEISRRI 167

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F  +  +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLD-DTTVKFEIWDTAGQ 67
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   TF     W ++L  + + P    I   L  NK 
Sbjct: 68  ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS-P---SIVIALAGNKA 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKI 626
           D     +AN   ++ E+ +   ++      + ETSAK  +N++D    + +K+
Sbjct: 124 D-----LANK--RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y  T+GV+    V   +   I +  +WD AGQ
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I +  +WD AG 
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGL 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +DL  +V       IP VL  NK 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D     +    AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 9/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F  +  +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   TF     W ++L  + + P+   I   L  NK 
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PN---IVIALAGNKA 118
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   K  +    A+      + N   + ETSAK  +N+++    + +K+
Sbjct: 119 DLASKRAVEFQEAQA---YADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 67  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 122
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 123 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F  +  +TIG  F  + +  D +T ++ ++WD AG 
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGL 64
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   TF     W ++L  + + P+   I   L  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PN---IVIALAGNKA 120
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   K  +    A+      + N   + ETSAK  +N+++    + +K+
Sbjct: 121 DLASKRAVEFQEAQA---YADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F  +  +TI   F  + +  D +T ++ ++WD AGQ
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLD-DTTVKFEIWDTAGQ 64
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   TF     W ++L  + + P+   I   L  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PN---IVIALAGNKA 120
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   K  +    A+      + N   + ETSAK  +N+++    + +K+
Sbjct: 121 DLASKRAVEFQEAQA---YADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AGQ
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++   YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 67  ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 122
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
           D     +AN  A   +F +  +++      + ETSAK + N+++    + +K+ +N
Sbjct: 123 D-----LANKRAV--DFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D +T ++ ++WD AG 
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGL 64
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  + + P+   I   L  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 120
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKI 626
           D     +AN  A   +F +  +++      + ETSAK ++N+++    + +K+
Sbjct: 121 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  ++V   F   Y  TI  D   K +  D +  + L++ D AG 
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCM-LEILDTAGT 63
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
           E+F  M  +Y K   G  +V+ +T  +TF+ +    QDL  ++  + D + +P +L+ NK
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVGNK 119
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +     +     ++ N   + E+SAK  IN+++    LV++I
Sbjct: 120 CDLEDERVVGK-EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+  +GKTS+   +  + F   Y+ TIG+DF L+ ++      + LQ+WDI GQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
             G M   Y   A G  +V+D+T   +F+ +  W   +       +  P+   L+ NK D
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALVGNKID 126
Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610
                    P K   F +E+ FS  F  SAK
Sbjct: 127 LEHMRTI-KPEKHLRFCQENGFSSHF-VSAK 155

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  D   K +  D +  + L++ D AG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
           E+F  M  +Y K   G  +V+ +T  +TF+ +    QDL  ++  + D + +P +L+ NK
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +     +     ++ N   + E+SAK  IN+++    LV++I
Sbjct: 118 CDLEDERVVGK-EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D   +P VL+ NKC
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKC 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P   +    A+  +  + +    + ETSAK    +DDA  TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAGRTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  D   K +  D +  + L++ D AG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
           E+F  M  +Y K   G  +V+ +T  +TF+ +    QDL  ++  + D   +P +L+ NK
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +     +     ++     + E+SAK  IN+++    LV++I
Sbjct: 118 CDLEDERVVGK-EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  D   K +  D +  + L++ D AG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
           E+F  M  +Y K   G  +V+ +T  +TF+ +    QDL  ++  + D   +P +L+ NK
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           CD   E +     +     ++     + E+SAK  IN+++    LV++I
Sbjct: 118 CDLEDERVVGK-EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D   +P VL+ NK 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKS 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P   +    A+  +  + +    + ETSAK    +DDA  TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 45/207 (21%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI----------- 507
           YK +++GE   GK+SI+ R     F  +   TIG  F   V++ +   I           
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 508 -------------------------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT 542
                                    I+  +WD AGQER+ ++  +YY+ A  A +VFD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 543 RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS 602
            + T D    W   L  K++    N I  +L+ANK D+ K  +  +  ++ ++ +++N  
Sbjct: 128 NSNTLDRAKTWVNQL--KIS---SNYI-IILVANKIDKNKFQV--DILEVQKYAQDNNLL 179
Query: 603 GWFETSAKDNINIDDAAKTLVQKILEN 629
            + +TSAK   NI +    L ++I +N
Sbjct: 180 -FIQTSAKTGTNIKNIFYMLAEEIYKN 205

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
           K+++  +++  +F   Y  TI  D   K+ S D     RL + D AGQE FG M   Y +
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDG-IPARLDILDTAGQEEFGAMREQYMR 79
Query: 531 EAVGAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKCD-QPKEGIANN 588
              G  +VF +    +F+ V K + Q L  K    D +  P VL+ NK D + +  +  +
Sbjct: 80  AGHGFLLVFAINDRQSFNEVGKLFTQILRVK----DRDDFPVVLVGNKADLESQRQVPRS 135
Query: 589 PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            A    F   H+ + +FE SAK  +N+D+A + LV+ +
Sbjct: 136 EAS--AFGASHHVA-YFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           Y++ V G  G GK+S++ R+V   F   Y  T+  D   +V+S D ++I  LQ+ D  G 
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCD-KSICTLQITDTTGS 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK--WKQDLDAKVTLPDGNPIPCVLLAN 576
            +F  M R+   +     +V+ +T   + +  LK  ++Q  + K    D   IP +L+ N
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEE-LKPIYEQICEIK---GDVESIPIMLVGN 117
Query: 577 KCDQ-PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           KCD+ P   + ++ A   E +       + ETSAK N N+    K L Q++L  +K
Sbjct: 118 KCDESPSREVQSSEA---EALARTWKCAFMETSAKLNHNV----KELFQELLNLEK 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 79
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +  + +F  +  +++ +     + D + +P VL+ NKC
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK---RVKDSDDVPMVLVGNKC 136
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P   +    A   E  K +    + ETSAK    ++DA  TLV++I
Sbjct: 137 DLPTRTVDTKQAH--ELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI 181

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G+ G GK+++  ++  + F P Y  TI  D  LK    D++  I L + D AGQ
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAI-LDVLDTAGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E F  M   Y +   G  IV+ VT  A+F+ V ++ Q +   + + D    P +L+ANK 
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 133
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
           D      +  +  K  E   ++N   + ETSAKD  +N+D     LV+ I
Sbjct: 134 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 68
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 69  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 125
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 126 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
           K+++  +++  +F   Y  TI   +  + +  D     RL + D AGQE FG M   Y +
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAA--RLDILDTAGQEEFGAMREQYMR 75
Query: 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC--DQPKEGIANN 588
              G  +VF VT   +F+ + K+++ +   + + D +  P +L+ NK   D  ++     
Sbjct: 76  TGEGFLLVFSVTDRGSFEEIYKFQRQI---LRVKDRDEFPMILIGNKADLDHQRQVTQEE 132
Query: 589 PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
             ++   +K      + E SAK  +N+D A   LV+ I
Sbjct: 133 GQQLARQLK----VTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGH 79
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D   +P VL+ NKC
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKC 136
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P   +    A+  +  + +    + ETSAK    +DDA  TLV++I
Sbjct: 137 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 181

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G+ G GK+++  ++  + F P Y  TI  D  LK    D++  I L + D AGQ
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAI-LDVLDTAGQ 71
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E F  M   Y +   G  IV+ VT  A+F+ V ++ Q +   + + D    P +L+ANK 
Sbjct: 72  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 128
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
           D      +  +  K  E   ++N   + ETSAKD  +N+D     LV+ I
Sbjct: 129 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 67  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 124 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 67  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 124 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK ++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 71
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +   Y++   G   VF +T   +F A   +++ +   + + +   +P +L+ NK
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 128
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D + K  ++   AK      E     + ETSAK   N+D     L+++I
Sbjct: 129 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ N+C
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNRC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 75
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +   Y++   G   VF +T   +F A   +++ +   + + +   +P +L+ NK
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 132
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D + K  ++   AK      E     + ETSAK   N+D     L+++I
Sbjct: 133 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +   Y++   G   VF +T   +F A   +++ +   + + +   +P +L+ NK
Sbjct: 64  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 120
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D + K  ++   AK      E     + ETSAK   N+D     L+++I
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           +S+++S  S M   +    KI+V+G+   GKT+++  +    F  +Y  T+   F     
Sbjct: 6   ASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTA 62
Query: 501 SWDHETI-IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
           S++ +T  I L LWD +G   + N+  + Y ++    I FD++R  T D+VL KWK ++
Sbjct: 63  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D  GQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTGGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D E I  L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGE-ICLLDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  +I   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  +I   +  +V+  D ET + L + D AGQ
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVI-DGETCL-LDILDTAGQ 67
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 68  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 125 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   +  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++  ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREFRQH 166

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGH 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D  GQ
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTTGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG+
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGK 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E    M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGG 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGL 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 67  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 124 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
           KI+V+G+   GKT+++  +    F  +Y  T+   F     S++ +T  I L LWD +G 
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDTSGS 86
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
             + N+  + Y ++    I FD++R  T D+VL KWK ++
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGL 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G +G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D   +P VL+ NK 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKS 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P   +    A+  +  + +    + ETSAK    +DDA  TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AGQ
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D   +P VL+ NK 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKS 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P   +    A+  +  + +    + ETSAK    +DDA  TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGV 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
           KI+V+G+   GKT+++  +    F  +Y  T+   F     S++ +T  I L LWD +G 
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDTSGS 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
             + N+  + Y ++    I FD++R  T D+VL KWK ++
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +   Y++   G   VF +T   +F A   +++ +   + + +   +P +L+ NK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 118
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D + K  ++   AK      + N + + ETSAK   N+D     L+++I
Sbjct: 119 SDLEDKRQVSVEEAK--NRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETXL-LDILDTAGG 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D AG 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGI 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G+ G GK+++  ++  + F   Y  TI  D  LK    D++  I L + D AGQ
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAI-LDVLDTAGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E F  M   Y +   G  IV+ VT  A+F+ V ++ Q +   + + D    P +L+ANK 
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 133
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
           D      +  +  K  E   ++N   + ETSAKD  +N+D     LV+ I
Sbjct: 134 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
            E +  +   Y++   G   VF +T   +F A   +++ +   + + +   +P +L+ NK
Sbjct: 64  LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 120
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D + K  ++   AK      E     + ETSAK   N+D     L+++I
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G+ G GK+++  ++  + F   Y  TI  D   K    D++  I L + D AGQ
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAI-LDVLDTAGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E F  M   Y +   G  IV+ VT  A+F+ V ++ Q +   + + D    P +L+ANK 
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 133
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
           D      +  +  K  E   ++N   + ETSAKD  +N+D     LV+ I
Sbjct: 134 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 64
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
            E +  +   Y++   G  +VF +T   +F A  +++ Q L  K    + + IP +++ N
Sbjct: 65  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVK---AEEDKIPLLVVGN 121
Query: 577 KCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D  +     +    +K +E+  +     + ETSAK   N+D     L+++I
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQ-----YVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  KV+    E  +++ + D AG
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 60
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
            E +  +   Y++   G  +VF +T   +F A  +++ Q L  K    + + IP +++ N
Sbjct: 61  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVK---AEEDKIPLLVVGN 117
Query: 577 KCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D  +     +    +K +E+  +     + ETSAK   N+D     L+++I
Sbjct: 118 KSDLEERRQVPVEEARSKAEEWGVQ-----YVETSAKTRANVDKVFFDLMREI 165

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 460 KILVIGELGAGKTSIIKRYVHQF--FSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIA 516
           K+ V+GE   GK+++I  +  +   F   Y  T GV+  +  ++    T+ + L L D A
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG-NPIPCVLLA 575
           G + +      Y+     A +VFDV+   +F++   W + L  K   PD   P+  VL+A
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL--KSARPDRERPLRAVLVA 139
Query: 576 NKCDQP 581
           NK D P
Sbjct: 140 NKTDLP 145

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
           K+S++ R+V   F   Y  TI  D   +V+S D +++  LQ+ D  G  +F  M R+   
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCD-KSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 531 EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNP 589
           +     +VF VT   + + +   +K  +  K ++ D   IP +L+ NKCD+ +  +    
Sbjct: 79  KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVMLVGNKCDETQREVDTRE 135
Query: 590 AKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           A+    + +     + ETSAK N N+    K L Q++L
Sbjct: 136 AQA---VAQEWKCAFMETSAKMNYNV----KELFQELL 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D A Q
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAAQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NK 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKX 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K + +G+   GKT ++  Y    F   Y  T+  +F+  V + D + I+ L LWD AGQE
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQ-IVNLGLWDTAGQE 68
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y+ A    + F +   A+++ VL KW  +L  +   P+   +P VL+  K 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL--RRFAPN---VPIVLVGTKL 123
Query: 579 D--QPKEGIANNPAKI-----DEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           D    K  +A++   I     +E  K+   + + E S+K   N+     T ++ +L+
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+  D ET + L + D A Q
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAAQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NK 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKX 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F      TI   +  +V+  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NK 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKS 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++  GKT++++      +   Y  T+  ++   + +   E  + L LWD +G  
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--EEQRVELSLWDTSGSP 70
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
            + N+  + Y ++    + FD++R  T D+ L KW+ ++
Sbjct: 71  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 109

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G+ G GKTS++  +    F   Y  T+   + + +        + L +WD AGQ+
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKP--VHLHIWDTAGQD 93
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLD 558
            +  +  ++Y +A    + FDVT   +FD +  +W  +++
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+   GKT ++  +        Y  T+  +F+  V+ + +E  I L LWD AGQE
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFI-LHLWDTAGQE 82
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y ++    + F V    +FD +  KW+ ++   +     +    VL+  K 
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKV 137
Query: 579 DQPKEGIAN-NPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D  K+G  +    + D+  ++     + E S+   I +++  +  V  I  N
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+   GKT ++  +        Y  T+  +F+  V+ + +E  I L LWD AGQE
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFI-LHLWDTAGQE 81
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y ++    + F V    +FD +  KW+ ++   +     +    VL+  K 
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKV 136
Query: 579 DQPKEG 584
           D  K+G
Sbjct: 137 DLRKDG 142

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++  GKT++++      +   Y  T+  ++   + +   E  + L LWD +G  
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--EEQRVELSLWDTSGSP 86
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
            + N+  + Y ++    + FD++R  T D+ L KW+ ++
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K + +G+   GKT ++  Y    F   Y  T+  +F+  V+   +   + L LWD AGQE
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGATVNLGLWDTAGQE 67
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y+ A    + F +   A+++ V  KW  +L  K   P    +P VL+  K 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPG---VPIVLVGTKL 122
Query: 579 D--QPKEGIANNPAKI-------DEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           D    K+   ++P  +       +E  K      + E S+K   N+       ++ +L+
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++  GKT++++      +   Y  T+  ++   + +   E  + L LWD +G  
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--EEQRVELSLWDTSGSP 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
            + N+  + Y ++    + FD++R  T D+ L KW+ ++
Sbjct: 70  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 108

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++  V+  D + +  L LWD AGQE
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +   + I F +   A+F+ V  KW
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 99

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K + +G+   GKT ++  Y    F   Y  T+  +F+  V+  D  T+  L LWD AGQE
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVV-DGSTV-NLGLWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y+ A    + F +   A+++ +  KW  +L  K   P    IP VL+  K 
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL--KHYAPG---IPIVLVGTKL 120
Query: 579 DQPKEGIANNPAKIDEFIKEH 599
           D   +          +F+K+H
Sbjct: 121 DLRDD---------KQFLKDH 132

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++  V+  D + +  L LWD AGQE
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +   + I F +   A+F+ V  KW
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 101

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++  V+  D + +  L LWD AGQE
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +   + I F +   A+F+ V  KW
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 97

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI ++G    GK+S+  ++V   F   Y  TI   F  K+++ + +    LQL D AGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
            +    + Y  +  G  +V+ VT   +F+   V+  K  D+  KV       IP +L+ N
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 119
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV 632
           K D   E + +      + + E   + + E+SAK+N    D  + +   ILE +K+
Sbjct: 120 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEKM 170

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           ++ ++G   +GKT+ +       F+     T+G  F ++ ++  + TI   +LWDI GQ 
Sbjct: 33  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTI---KLWDIGGQP 87
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF +M   Y +   G   +  +  AA  + +   K +L   +  P    IP ++L NK D
Sbjct: 88  RFRSMWERYCR---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 580 QPKEGIANNPAKIDEFIKEHNFSG-------WFETSAKDNINIDDAAKTLVQ 624
            P  G  +      E I++ N S         +  S K+  NID   + L+Q
Sbjct: 145 LP--GALDE----KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI ++G    GK+S+  ++V   F   Y  TI   F  K+++ + +    LQL D AGQ+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
            +    + Y  +  G  +V+ VT   +F+   V+  K  D+  KV       IP +L+ N
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 119
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           K D   E + +      + + E   + + E+SAK+N    D  + +   ILE +K++
Sbjct: 120 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEKLE 171

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G++  GKT ++  Y    F   Y  T+  +++  V+       + L LWD AGQE
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQE 68
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +     I F +   A+++ V  KW
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 103

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    FS  Y  T+  +++  V+  D + +  L LWD AGQE
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 72
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +     I F +   A+F+ V  KW
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 107

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K + +G+   GKT ++  Y    F   Y  T+  +F+  V+  D  T+  L LWD AGQE
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGNTV-NLGLWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y+ A    + F +   A+++ V  KW  +L  +   P    +P +L+  K 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL--RHYAPG---VPIILVGTKL 120
Query: 579 D 579
           D
Sbjct: 121 D 121

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++  V+  D + +  L LWD AGQE
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +     I F +   A+F+ V  KW
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
           +IL++G  GAGKT+++           Y+  +G V   +  + ++ ET+    I   +WD
Sbjct: 19  RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           + GQ+R  ++ R YY+   G   V D    +      +  Q +  +  L +      ++ 
Sbjct: 68  VGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA---AWLVF 124
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WF 605
           ANK D P+   A + A+I E +  H+     WF
Sbjct: 125 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWF 154

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
           +IL++G  GAGKT+++           Y+  +G V   +  + ++ ET+    I   +WD
Sbjct: 19  RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           + GQ+R  ++ R YY+   G   V D    +      +  Q +  +  L +      ++ 
Sbjct: 68  VGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNA---VWLVF 124
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WFETS 608
           ANK D P+   A + A+I E +  H+     WF  S
Sbjct: 125 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWFIQS 157

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
           +IL++G  GAGKT+++           Y+  +G V   +  + ++ ET+    I   +WD
Sbjct: 2   RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           + GQ+R  ++ R YY+   G   V D    +      +  Q +  +  L +      ++ 
Sbjct: 51  VGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA---AWLVF 107
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WF 605
           ANK D P+   A + A+I E +  H+     WF
Sbjct: 108 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWF 137

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G++  GKT ++  Y    F   Y  T+  +++  V+       + L LWD AGQE
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQE 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +     I F +   A+++ V  KW
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 104

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           ++ ++G   +GKT+ +       FS     T+G  F ++ ++  + TI   ++WDI GQ 
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTI---KIWDIGGQP 78
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF +M   Y +   G   +  +  AA  + +   + +L   +  P    IP ++L NK D
Sbjct: 79  RFRSMWERYCR---GVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 580 QPKEGIANNPAKIDEFIKEHNFSG-------WFETSAKDNINIDDAAKTLVQ 624
            P      N     + I++ N S         +  S K+  NID   + L+Q
Sbjct: 136 LP------NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G++  GKT ++  Y    F   Y  T+  ++A+ V+         L L+D AGQE
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
            +  +  + Y +     + F V   ++F+ V  KW
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI ++G    GK+S+  ++V   F   Y  TI   F  K+++ + +    LQL D AGQ+
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 60
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
            +    + Y  +  G  +V+ VT   +F+   V+  K  D+  KV       IP +L+ N
Sbjct: 61  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 114
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV 632
           K D   E + +      + + E   + + E+SAK+N    D  + +   ILE +K+
Sbjct: 115 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEKI 165

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 38/150 (25%)
Query: 448 YSKMPDK-----REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG--------VD 494
           +S M DK     +E   +IL++G  GAGKT+I+           YR  IG        + 
Sbjct: 5   FSSMFDKLWGSNKEL--RILILGLDGAGKTTIL-----------YRLQIGEVVTTKPTIG 51
Query: 495 FALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT---RAATFDAVL 551
           F ++ LS+ +   ++L +WD+ GQ       R YY +      V D T   R +T     
Sbjct: 52  FNVETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA---- 104
Query: 552 KWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581
              ++L   +   +      ++ ANK DQP
Sbjct: 105 --SKELHLMLQEEELQDAALLVFANKQDQP 132

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  +++  V+       + L LWD AGQE
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
            +  +  + Y +     I F +   A+F+ V  KW
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	663
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-70
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-66
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-56
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-53
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	9e-53
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-52
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-51
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-50
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-50
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-50
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-49
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-49
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-49
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-49
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-49
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-49
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	9e-49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-48
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-48
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-48
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-48
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-48
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-48
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-48
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-48
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	7e-48
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-47
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-47
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-47
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-47
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	5e-47
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-47
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	8e-47
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-46
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-46
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-46
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-46
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-45
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	9e-45
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-42
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-42
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-42
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-41
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-41
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-40
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-40
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-40
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-40
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-40
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-40
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-40
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	9e-39
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-39
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-38
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-38
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-38
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	8e-38
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-37
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-36
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-36
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-36
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-36
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-35
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-35
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-34
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-34
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-24
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-23
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-22
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-22
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-22
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-21
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-21
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-21
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-20
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-19
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-19
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-19
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	9e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-15
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	7e-15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	9e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-13
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-12
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-12
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-12
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	9e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	9e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	6e-05

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  224 bits (574), Expect = 5e-70
 Identities = 57/181 (31%), Positives = 101/181 (55%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ + K++++G+ G GKTS++ RYV+  +S  Y+ATIG DF  K ++ D + +  +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ A    +V+DVT A++F+ +  W+ +      +      P
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            V+L NK D  +     +     E  K       F TSAK+ IN+D A + + +  L+ +
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180

Query: 631 K 631
           +
Sbjct: 181 Q 181

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  216 bits (552), Expect = 2e-66
 Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  +++ L K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K +  D   +  +
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV-TM 59

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ A    +VFDVT   TF  +  W+ +   + +  D    P
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119

Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            V+L NK D     +A   A+   +    N   +FETSAK+ IN++ A +T+ +  L+  
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ- 176

Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
             +   + +        L++N +   +  +C+C
Sbjct: 177 --ETEVELYNEFPEPIKLDKNERAKASAESCSC 207

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  187 bits (477), Expect = 4e-56
 Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 4/179 (2%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  K   L+K++++G+ G GK+S++ RYV   F      TIGV+F  K L  D   +  +
Sbjct: 1   MAGKS-SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV-TM 58

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++   +Y+ +    + F V  + +F  +  WK++      + +    P
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            V+L NK D  +  ++   A+   + +++    +FETSAKD  N+  A +  V+++L  
Sbjct: 119 FVILGNKIDISERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  180 bits (460), Expect = 3e-53
 Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 9/214 (4%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M  + ++L+K+L+IG  G GK+ ++ R+    ++  Y +TIGVDF +K +  D +T+ +L
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KL 59

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ + G  IV+DVT   +F+ V  W Q++D          + 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID---RYATST-VL 115

Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            +L+ NKCD   +  +  + AK  EF   +    + ETSA D+ N++DA  T+ ++I E+
Sbjct: 116 KLLVGNKCDLKDKRVVEYDVAK--EFADANKMP-FLETSALDSTNVEDAFLTMARQIKES 172

Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
              Q   ++    E   ++N   Q   N   C C
Sbjct: 173 MSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  178 bits (454), Expect = 9e-53
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
               KI+V+G+  +GKTS+   +  + F   Y+ TIG+DF L+ ++      + LQ+WDI
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
            GQ   G M   Y   A G  +V+D+T   +F+ +  W   +       +  P+   L+ 
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALVG 122

Query: 576 NKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NK D       +P++           F +E+ FS     SAK   ++    + +  +IL 
Sbjct: 123 NKIDLEHMRTIKPEKH--------LRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILG 173

Query: 629 N 629
            
Sbjct: 174 I 174

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  176 bits (449), Expect = 6e-52
 Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 7/193 (3%)

Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
           S  S M +      KIL+IGE G GK+S++ R+    F P   ATIGVDF +K +S D  
Sbjct: 3   SGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN 62

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
              +L +WD AGQERF  +T  YY+ A G  +V+DVTR  TF  +  W  +L+   T   
Sbjct: 63  KA-KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE---TYCT 118

Query: 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
            N I  +L+ NK D+    +  N     +F ++H+   + E SAK    +  A + LV+K
Sbjct: 119 RNDIVNMLVGNKIDKENREVDRNEGL--KFARKHSML-FIEASAKTCDGVQCAFEELVEK 175

Query: 626 ILENDKVQANGDS 638
           I++   +  + + 
Sbjct: 176 IIQTPGLWESENQ 188

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  174 bits (445), Expect = 2e-51
 Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 10/174 (5%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           E   K++V+G    GK+S+I+RY    F+  Y+ TIGVDF  + +  + E + RL LWD 
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV-RLMLWDT 61

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQE F  +T+ YY+ A    +VF  T   +F+A+  W++ + A+        IP  L+ 
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-----VGDIPTALVQ 116

Query: 576 NKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NK D   +  I N  A+     K      ++ TS K+++N+ +  K L +K L+
Sbjct: 117 NKIDLLDDSCIKNEEAE--GLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  171 bits (437), Expect = 2e-50
 Identities = 56/180 (31%), Positives = 101/180 (56%), Gaps = 10/180 (5%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           + + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQ+WD 
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDT 59

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ A+G  +V+D+T   TF  + +W + ++      +      +L+ 
Sbjct: 60  AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN---EHANDE-AQLLLVG 115

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
           NK D     +  +  +     KE     + E+SAK++ N+++   TL + I E  K+ +N
Sbjct: 116 NKSDMETRVVTADQGE--ALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  172 bits (438), Expect = 3e-50
 Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 9/192 (4%)

Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
                +  P S M  + ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++
Sbjct: 14  ENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR 73

Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558
            +  D +TI +LQ+WD AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D
Sbjct: 74  TIELDGKTI-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 132

Query: 559 AKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617
                   N +  +L+ NKCD   +  +    AK  EF        + ETSAK+  N++ 
Sbjct: 133 ---RYASEN-VNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQ 185

Query: 618 AAKTLVQKILEN 629
           +  T+  +I + 
Sbjct: 186 SFMTMAAEIKKR 197

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  171 bits (436), Expect = 6e-50
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%)

Query: 433 GKTSITNGSSKEVSPYSKMPDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATI 491
           G +   +  S  + P         +  YKI++ G+   GK+S + R     F  +  AT+
Sbjct: 2   GSSHHHHHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61

Query: 492 GVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL 551
           GVDF +K L  D E    LQLWD AGQERF ++ + Y+++A G  +++DVT   +F  + 
Sbjct: 62  GVDFQMKTLIVDGERT-VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120

Query: 552 KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID-----EFIKEHNFSGWFE 606
           +W   ++          +P +L+ NK D            +      +    +    + E
Sbjct: 121 EWVDMIEDAA----HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCE 175

Query: 607 TSAKDNINIDDAAKTLVQKILE 628
           TSAKD  NI +A   L +++ +
Sbjct: 176 TSAKDGSNIVEAVLHLAREVKK 197

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  169 bits (431), Expect = 2e-49
 Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 9/182 (4%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           +  P    +++K ++IG++G GK+ ++ ++  + F      TIGV+F  +++    + I 
Sbjct: 6   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI- 64

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           +LQ+WD AGQERF  +TR YY+ A GA +V+D+TR +T++ +  W  D      L + N 
Sbjct: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPN- 120

Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
              +L+ NK D   +  +    AK  +F +E+    + E SAK   N++DA     +KI 
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAK--QFAEENGLL-FLEASAKTGENVEDAFLEAAKKIY 177

Query: 628 EN 629
           +N
Sbjct: 178 QN 179

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  170 bits (432), Expect = 3e-49
 Identities = 61/193 (31%), Positives = 109/193 (56%), Gaps = 9/193 (4%)

Query: 438 TNGSSKEVSPYSKMPDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA 496
            + SS  V   S  PD++ +FL+K++++G+   GKT +++R+    FS    +TIGVDF 
Sbjct: 8   HHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFT 67

Query: 497 LKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
           +K L    + + +LQ+WD AGQERF  +T+ YY+ A GA + +D+T+ ++F +V  W +D
Sbjct: 68  MKTLEIQGKRV-KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED 126

Query: 557 LDAKVTLPDGNPIPCVLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
           +         N I  +L+ NK D      ++   A+     + ++     ETSAKD+ N+
Sbjct: 127 VR---KYAGSN-IVQLLIGNKSDLSELREVSLAEAQ--SLAEHYDILCAIETSAKDSSNV 180

Query: 616 DDAAKTLVQKILE 628
           ++A   +  +++ 
Sbjct: 181 EEAFLRVATELIM 193

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  170 bits (432), Expect = 4e-49
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
             + VS  S      + + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +
Sbjct: 3   GLRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV 62

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
             + + + +LQLWD AGQERF  +T  YY+ A+G  +V+DVT   TF  + +W + ++  
Sbjct: 63  DINGKKV-KLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN-- 119

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
               +      +L+ NK D     +  +  +     KE     + E+SAK++ N+++   
Sbjct: 120 -EHANDE-AQLLLVGNKSDMETRVVTADQGE--ALAKELGIP-FIESSAKNDDNVNEIFF 174

Query: 621 TLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKN 657
           TL + I E              E   S+N  S  +  
Sbjct: 175 TLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSK 211

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  168 bits (428), Expect = 5e-49
 Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 10/180 (5%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M    + L+K+L+IG+ G GK+S++ R+    FS  Y  TIGVDF ++ +  + E + +L
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KL 60

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+   G  +V+DVT A +F  V +W  +++        + + 
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-----CDDVC 115

Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            +L+ NK D P+   +    A   +F  +      FETSAK+N+N+++    + + +L  
Sbjct: 116 RILVGNKNDDPERKVVETEDAY--KFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLRA 172

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  168 bits (428), Expect = 5e-49
 Identities = 57/189 (30%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M    ++L+K+L+IG+ G GKT ++ R+    F+  + +TIG+DF ++ +  D + I +L
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KL 59

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF  +T  YY+ A+G  +V+D+T   +FD +  W ++++        + + 
Sbjct: 60  QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE---EHASAD-VE 115

Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            ++L NKCD   +  ++    +  +   ++    + ETSAK NIN+++A  TL + I   
Sbjct: 116 KMILGNKCDVNDKRQVSKERGE--KLALDYGIK-FMETSAKANINVENAFFTLARDIKAK 172

Query: 630 DKVQANGDS 638
                   +
Sbjct: 173 MDKNWKATA 181

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  168 bits (427), Expect = 7e-49
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M +  +FL+K LVIG  G GK+ ++ +++ + F      TIGV+F  K+++   + + +L
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV-KL 61

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
           Q+WD AGQERF ++TR YY+ A GA +V+D+T   T++A+  W  D      L   N I 
Sbjct: 62  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR---MLASQN-IV 117

Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            +L  NK D   +  +    A    F +E+    + ETSA    N+++A     +KIL  
Sbjct: 118 IILCGNKKDLDADREVTFLEAS--RFAQENELM-FLETSALTGENVEEAFVQCARKILNK 174

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  169 bits (430), Expect = 9e-49
 Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 10/185 (5%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S    + +  +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I 
Sbjct: 6   SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI- 64

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           +  +WD AGQE+FG +   YY +A  A I+FDVT   T+  V  W +DL           
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCEN 119

Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           IP VL  NK D     +    AK   F ++ N   +++ SAK N N +     L +K++ 
Sbjct: 120 IPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIG 175

Query: 629 NDKVQ 633
           +  ++
Sbjct: 176 DPNLE 180

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  168 bits (427), Expect = 1e-48
 Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 9/185 (4%)

Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
              S M  + ++L+K+L+IG+ G GK+ ++ R+    ++  Y +TIGVDF ++ +  D +
Sbjct: 4   GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
           TI +LQ+WD AGQERF  +T  YY+ A G  +V+DVT   +F+ V +W Q++D       
Sbjct: 64  TI-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID---RYAS 119

Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
            N +  +L+ NKCD   +  +    AK  EF        + ETSAK+  N++ +  T+  
Sbjct: 120 EN-VNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAA 175

Query: 625 KILEN 629
           +I + 
Sbjct: 176 EIKKR 180

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  167 bits (426), Expect = 1e-48
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 17/190 (8%)

Query: 451 MPDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-- 507
           M D   ++L K L +G+ G GKTS++ +Y    F+  +  T+G+DF  K + +       
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 508 -------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
                  I LQLWD AG ERF ++T  ++++A+G  ++FD+T   +F  V  W   L   
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122

Query: 561 VTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
               +      VL  NK D   +  +    A+  E  +++    +FETSA +  NI  A 
Sbjct: 123 AYSEN---PDIVLCGNKSDLEDQRAVKEEEAR--ELAEKYGIP-YFETSAANGTNISHAI 176

Query: 620 KTLVQKILEN 629
           + L+  I++ 
Sbjct: 177 EMLLDLIMKR 186

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  167 bits (425), Expect = 2e-48
 Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 8/182 (4%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
              P   +F  ++++IG  G GKTS+++R+    F    ++T+GVDF +K +    + I 
Sbjct: 17  RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI- 75

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           RLQ+WD AGQERF ++T  YY+ A G  +V+D+T+  TFD + KW + +D        + 
Sbjct: 76  RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID---KYASED- 131

Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
              +L+ NK D   +  I     +  +F ++     + E SAKDN N+D+    LV  IL
Sbjct: 132 AELLLVGNKLDCETDREITRQQGE--KFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

Query: 628 EN 629
           + 
Sbjct: 190 KK 191

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  167 bits (424), Expect = 2e-48
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 9/185 (4%)

Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
                +P   ++++K+L+IG    GKTS + RY    F+P + +T+G+DF +K +    +
Sbjct: 10  HSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK 69

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
            I +LQ+WD AGQER+  +T  YY+ A+G  +++D+    +F AV  W   +    T   
Sbjct: 70  RI-KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK---TYSW 125

Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
            N    +L+ NKCD   E  +     +      +  F  +FE SAK+NIN+    + LV 
Sbjct: 126 DN-AQVILVGNKCDLEDERVVPAEDGR--RLADDLGFE-FFEASAKENINVKQVFERLVD 181

Query: 625 KILEN 629
            I E 
Sbjct: 182 VICEK 186

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  167 bits (424), Expect = 3e-48
 Identities = 59/189 (31%), Positives = 110/189 (58%), Gaps = 9/189 (4%)

Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
           +G            D+ ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA +
Sbjct: 10  HGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 69

Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558
            +  D +TI + Q+WD AG ER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L 
Sbjct: 70  SIQVDGKTI-KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128

Query: 559 AKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617
                 D N I  +L+ NK D      +  + A+   F +++  S + ETSA D+ N++ 
Sbjct: 129 ---DHADSN-IVIMLVGNKSDLRHLRAVPTDEAR--AFAEKNGLS-FIETSALDSTNVEA 181

Query: 618 AAKTLVQKI 626
           A +T++ +I
Sbjct: 182 AFQTILTEI 190

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  167 bits (425), Expect = 3e-48
 Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 10/206 (4%)

Query: 440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQF--FSPHYRATIGVDFAL 497
            +S        +        K+ V+GE   GK+++I  +  +   F   Y  T GV+  +
Sbjct: 2   AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV 61

Query: 498 KVLSWDHETIIRLQLW--DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ 555
             ++    T+  ++L+  D AG + +      Y+     A +VFDV+   +F++   W +
Sbjct: 62  APVTIPDTTV-SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE 120

Query: 556 DLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK-DNIN 614
            L +     +   +  VL+ANK D P +          ++   +    +F+ SA     +
Sbjct: 121 LLKSARPDRERP-LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANPPGKD 178

Query: 615 IDDAAKTLVQKILEN--DKVQANGDS 638
            D    ++      N  DKV A  D+
Sbjct: 179 ADAPFLSIATTFYRNYEDKVAAFQDA 204

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  167 bits (424), Expect = 5e-48
 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 17/198 (8%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + ++ +          
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82

Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AGQERF ++T  ++++A+G  ++FD+T   +F  V  W   L A     + 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN- 141

Query: 567 NPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
                VL+ NK D P +  +    A+  E   ++    +FETSA    N++ A +TL+  
Sbjct: 142 --PDIVLIGNKADLPDQREVNERQAR--ELADKYGIP-YFETSAATGQNVEKAVETLLDL 196

Query: 626 ILEN-DKVQANGDSHATS 642
           I++  ++         T 
Sbjct: 197 IMKRMEQCVEKTQIPDTV 214

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  165 bits (421), Expect = 7e-48
 Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 13/195 (6%)

Query: 441 SSKEVSPYSKMPDK-REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
                   S +P   R  ++KI+VIG+   GKT +  R+    F     ATIGVDF  + 
Sbjct: 2   GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61

Query: 500 LSWDHETIIRLQLWDIAGQERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558
           +  D E  I++QLWD AGQERF  +M + YY+       V+D+T  A+F ++  W ++  
Sbjct: 62  VDIDGER-IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120

Query: 559 AKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAK---DNIN 614
                   N IP +L+ NKCD      +  + A+  +F   H+    FETSAK   DN +
Sbjct: 121 ---QHLLANDIPRILVGNKCDLRSAIQVPTDLAQ--KFADTHSMP-LFETSAKNPNDNDH 174

Query: 615 IDDAAKTLVQKILEN 629
           ++    TL  K+  +
Sbjct: 175 VEAIFMTLAHKLKSH 189

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  165 bits (421), Expect = 7e-48
 Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 9/190 (4%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           S       S +  +  +L+K ++IG+ G GK+ ++ ++  + F P +  TIGV+F  +++
Sbjct: 4   SHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV 63

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           + D + I +LQ+WD AGQE F ++TR YY+ A GA +V+D+TR  TF+ +  W +D    
Sbjct: 64  NIDGKQI-KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-- 120

Query: 561 VTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
                 N +  +L+ NK D      +     +   F +EH    + ETSAK   N+++A 
Sbjct: 121 -QHSSSN-MVIMLIGNKSDLESRRDVKREEGE--AFAREHGLI-FMETSAKTACNVEEAF 175

Query: 620 KTLVQKILEN 629
               ++I   
Sbjct: 176 INTAKEIYRK 185

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  165 bits (420), Expect = 1e-47
 Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 9/182 (4%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
                  ++++K+L+IG    GKTS + RY    F+P + +T+G+DF +K +    + + 
Sbjct: 14  LYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV- 72

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           +LQ+WD AGQER+  +T  YY+ A+G  +++D+T   +F+AV  W   +    T    N 
Sbjct: 73  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK---TYSWDN- 128

Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
              +L+ NKCD  +E  +     +     ++  F  +FE SAK+NI++  A + LV  I 
Sbjct: 129 AQVILVGNKCDMEEERVVPTEKGQ--LLAEQLGFD-FFEASAKENISVRQAFERLVDAIC 185

Query: 628 EN 629
           + 
Sbjct: 186 DK 187

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  164 bits (417), Expect = 1e-47
 Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 9/175 (5%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           R + +K++++GE   GKTS++ RY    F+  +  T+G  F  K L+   + +  L +WD
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV-NLAIWD 61

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
            AGQERF  +  +YY+++ GA +V+D+T   +F  V  W ++L     +     I   ++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR---KMLGNE-ICLCIV 117

Query: 575 ANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            NK D  KE  ++   A+   + +       + TSAK N  I++    L ++++E
Sbjct: 118 GNKIDLEKERHVSIQEAE--SYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  165 bits (420), Expect = 2e-47
 Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 12/211 (5%)

Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
                  +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ RLQ
Sbjct: 10  FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQ 68

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           LWD AG ERF ++   Y +++  A +V+D+T   +F    KW  D+  +     G+ +  
Sbjct: 69  LWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVII 124

Query: 572 VLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
           +L+ NK D   K  ++    +     KE N   + ETSAK   N+    + +   +   +
Sbjct: 125 MLVGNKTDLADKRQVSIEEGE--RKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNC 661
             Q              L +  ++  +   C
Sbjct: 182 STQDRSREDMID---IKLEKPQEQPVSEGGC 209

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  164 bits (418), Expect = 2e-47
 Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 12/193 (6%)

Query: 438 TNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFAL 497
            + SS  V   S   D   FL+K LVIG  G GK+ ++ +++   F      TIGV+F  
Sbjct: 8   HHHSSGLVPRGSIWSD---FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGS 64

Query: 498 KVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL 557
           +V++   +T+ +LQ+WD AGQERF ++TR YY+ A GA +V+D+T   T++++  W  D 
Sbjct: 65  RVVNVGGKTV-KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123

Query: 558 DAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616
               TL   N I  +L  NK D   E  +    A    F +E+    + ETSA    N++
Sbjct: 124 R---TLASPN-IVVILCGNKKDLDPEREVTFLEAS--RFAQENELM-FLETSALTGENVE 176

Query: 617 DAAKTLVQKILEN 629
           +A     + IL  
Sbjct: 177 EAFLKCARTILNK 189

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  164 bits (418), Expect = 3e-47
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 10/207 (4%)

Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV-DFALKVLSWDHETIIRLQ 511
           ++RE  YKI +IG+ G GKT+ I R +   F  +Y AT+G  +  +  L      I +  
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI-KFN 64

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQE+   +  VYY  A GA + FDVT   T   + +W ++    V   +    P 
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ-AVVGNE---API 120

Query: 572 VLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
           V+ ANK D   ++ I+       E +K  N+  +FE SAK   N       L +      
Sbjct: 121 VVCANKIDIKNRQKISKKLVM--EVLKGKNYE-YFEISAKTAHNFGLPFLHLARIFTGRP 177

Query: 631 KVQANGDSHATSEAVFSLNRNSQETKN 657
            +    + +     V     + +E+K 
Sbjct: 178 DLIFVSNVNLEPTEVNYDYHSPEESKY 204

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  163 bits (416), Expect = 5e-47
 Identities = 62/190 (32%), Positives = 113/190 (59%), Gaps = 9/190 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +TI + Q+WD 
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L       D N I  +L+ 
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR---DHADSN-IVIMLVG 117

Query: 576 NKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634
           NK D      +  + A+   F +++N S + ETSA D+ N+++A K ++ +I      + 
Sbjct: 118 NKSDLRHLRAVPTDEAR--AFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

Query: 635 NGDSHATSEA 644
             D  A  E+
Sbjct: 175 IADRAAHDES 184

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  163 bits (415), Expect = 5e-47
 Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 9/185 (4%)

Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
               +  +   F++K+++IGE G GKT+++ R+    FS   R TIGV+F+ + +     
Sbjct: 13  GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA 72

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
            + + Q+WD AG ER+  +T  YY+ AVGA +VFD+T+  T+  V +W ++L       +
Sbjct: 73  AV-KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY---DHAE 128

Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
              I  +L+ NK D  +   +    A+   F + +    + ETSA D+ N++ A +T+++
Sbjct: 129 AT-IVVMLVGNKSDLSQAREVPTEEAR--MFAENNGLL-FLETSALDSTNVELAFETVLK 184

Query: 625 KILEN 629
           +I   
Sbjct: 185 EIFAK 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  162 bits (413), Expect = 7e-47
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 9/183 (4%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S         +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T+ 
Sbjct: 5   SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV- 63

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           RLQLWD AGQERF ++   Y +++  A +V+D+T   +F    KW  D+  +     G+ 
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSD 119

Query: 569 IPCVLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           +  +L+ NK D   K  ++    +     KE N   + ETSAK   N+    + +   + 
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGE--RKAKELNVM-FIETSAKAGYNVKQLFRRVAAALP 176

Query: 628 END 630
             D
Sbjct: 177 GMD 179

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  163 bits (414), Expect = 8e-47
 Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 10/198 (5%)

Query: 433 GKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG 492
           G +   +  S  + P   M D  +FL+KI++IG  G GKT +++R+    F P   ATIG
Sbjct: 2   GSSHHHHHHSSGLVPRGSMEDY-DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 60

Query: 493 VDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK 552
           VDF +K +  + E + +LQ+WD AGQERF ++T+ YY+ A    + +D+T   +F  + +
Sbjct: 61  VDFMIKTVEINGEKV-KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE 119

Query: 553 WKQDLDAKVTLPDGNPIPCVLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKD 611
           W ++++          +  VL+ NK D   +  ++   A+  EF +  +   + ETSAK+
Sbjct: 120 WLREIE---QYASNK-VITVLVGNKIDLAERREVSQQRAE--EFSEAQDMY-YLETSAKE 172

Query: 612 NINIDDAAKTLVQKILEN 629
           + N++     L  +++  
Sbjct: 173 SDNVEKLFLDLACRLISE 190

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  161 bits (411), Expect = 1e-46
 Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 10/182 (5%)

Query: 450 KMPDKREFLYKILVIGELGAGKTSIIKRYV-HQFFSPHYRATIGVDFALKVLSWDHETII 508
              D  +  +K++++G+ G GKT ++ R+    F +  + +T+G+DF  KVL  D   + 
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV- 60

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           +LQ+WD AGQERF ++T  YY++A    +++DVT  A+FD +  W  ++         + 
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH---EYAQHD- 116

Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           +  +LL NK D   E  +     +  +  KE+    + ETSAK  +N+D A   + +++ 
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGE--KLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELK 173

Query: 628 EN 629
             
Sbjct: 174 RR 175

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  162 bits (412), Expect = 2e-46
 Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 9/175 (5%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++++KIL+IG    GKTS + RY    F+P + +T+G+DF +K +  + + I +LQ+WD 
Sbjct: 6   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 64

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AG ER+  +T  YY+ A+G  +++D+T   +F+AV  W   +    T    N    +L+ 
Sbjct: 65  AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK---TYSWDN-AQVLLVG 120

Query: 576 NKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           NKCD   E  +++   +  +      F  +FE SAKDNIN+    + LV  I E 
Sbjct: 121 NKCDMEDERVVSSERGR--QLADHLGFE-FFEASAKDNINVKQTFERLVDVICEK 172

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  161 bits (409), Expect = 3e-46
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
              +    K++++G++GAGK+S++ R+V   F     +TIG  F  + L+ +  T+ + +
Sbjct: 6   AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-KFE 64

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQER+ ++  +YY+ A  A IVFDVT  A+F+   KW Q+L A+        +  
Sbjct: 65  IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVM 120

Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
            L  NK D      +    A+   + +E+    + ETSAK   N+ +    + +++    
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQ--TYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQ 177

Query: 631 KVQ 633
             +
Sbjct: 178 PTE 180

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  159 bits (405), Expect = 6e-46
 Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 9/172 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D  T+ + ++WD AGQ
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTV-KFEIWDTAGQ 65

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++L  +        I   L  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIALSGNKA 121

Query: 579 DQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D   +  +    A+   +  +++   + ETSAK ++N+++    + +K+ +N
Sbjct: 122 DLANKRAVDFQEAQ--SYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPKN 170

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  161 bits (409), Expect = 7e-46
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 20/220 (9%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           + L+KI++IG+ G GK++++ R+    F+   ++TIGV+FA + L  + + I + Q+WD 
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KAQIWDT 69

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA IV+D++++++++    W  +L       D N +   L+ 
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR---ENADDN-VAVGLIG 125

Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634
           NK D      +    +K   F +E+    + ETSA ++ N+D A + L+  I +      
Sbjct: 126 NKSDLAHLRAVPTEESK--TFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSKHQ 182

Query: 635 -----------NGDSHATSEAVFSLNRNSQETKNGRNCAC 663
                         + A +    SL     E K      C
Sbjct: 183 MDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNC 222

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  157 bits (399), Expect = 4e-45
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K+ ++G+ G GK+SI+ R+V   F P+   TIG  F  K + + +E   +  +WD AG 
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGL 65

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLANK 577
           ERF  +  +YY+ +  A IV+D+T+  TF  +  W ++L        G P I   +  NK
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNK 120

Query: 578 CDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           CD      +    AK  ++    +   + ETSAK+ INI++    + ++I  
Sbjct: 121 CDLTDVREVMERDAK--DYADSIHAI-FVETSAKNAININELFIEISRRIPS 169

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  157 bits (399), Expect = 9e-45
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
                  K+ ++G+ G GK+SI+ R+V   F  +   TIG  F  K +   +E   +  +
Sbjct: 18  GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLI 76

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
           WD AGQERF ++  +YY+ +  A IV+D+T+  +F  + KW ++L           I   
Sbjct: 77  WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMA 132

Query: 573 LLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           +  NKCD      +    AK  E+ +        ETSAK+ INI++  + + ++I   D 
Sbjct: 133 IAGNKCDLSDIREVPLKDAK--EYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLDP 189

Query: 632 VQ 633
            +
Sbjct: 190 HE 191

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  152 bits (385), Expect = 1e-42
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 45/210 (21%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
           +  YK +++GE   GK+SI+ R     F  +   TIG  F   V++ +   I        
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 508 ----------------------------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539
                                       I+  +WD AGQER+ ++  +YY+ A  A +VF
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH 599
           D++ + T D    W   L         N    +L+ANK D+ K  +     +  ++ +++
Sbjct: 125 DISNSNTLDRAKTWVNQLKI-----SSN-YIIILVANKIDKNKFQVDILEVQ--KYAQDN 176

Query: 600 NFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           N   + +TSAK   NI +    L ++I +N
Sbjct: 177 NLL-FIQTSAKTGTNIKNIFYMLAEEIYKN 205

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  150 bits (381), Expect = 3e-42
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 24/200 (12%)

Query: 438 TNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFAL 497
            + S +E   +    D    ++K++++GE G GK+++   +        +      D   
Sbjct: 6   HHSSGRENLYFQGQKD---GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYE 62

Query: 498 KVLSWDHETIIRLQLWDIAGQERFGNMTR-VYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
           + +  D E +  L ++DI  Q   G   R    +      IVF VT   +F  V +    
Sbjct: 63  RRIMVDKEEVT-LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 121

Query: 557 LDAKVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSA 609
           L A       + +P +L+ NK D         +EG               +     ETSA
Sbjct: 122 LRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRH--------LAGTLSCK-HIETSA 169

Query: 610 KDNINIDDAAKTLVQKILEN 629
             + N  +  +  V++I   
Sbjct: 170 ALHHNTRELFEGAVRQIRLR 189

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  148 bits (377), Expect = 5e-42
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 21/177 (11%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           ++K++++GE G GK+++   +        +      D   + +  D E  + L ++DI  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE-VTLIVYDIWE 60

Query: 518 QERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           Q    G +     +      IVF VT   +F  V +    L A       + +P +L+ N
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGN 117

Query: 577 KCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D         +EG               +     ETSA  + N  +  +  V++I
Sbjct: 118 KSDLARSREVSLEEGRH--------LAGTLSCK-HIETSAALHHNTRELFEGAVRQI 165

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  146 bits (371), Expect = 5e-41
 Identities = 36/181 (19%), Positives = 78/181 (43%), Gaps = 16/181 (8%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSP--HYRATIGVDFALKVLSWDHETI--IRLQLWD 514
            K++++G  G+GKT+++++ +    S      AT+G+D     +    +    + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573
            AG+E F +    +  +      V+D++   A  DA+  W  ++ A+      +  P +L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-----ASSSPVIL 117

Query: 574 LANKCD--QPKEGIANNPAKIDEFIKEHNFSG----WFETSAKDNINIDDAAKTLVQKIL 627
           +    D    K+  A       E + +  F       F  + +++  +    KT++ + L
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

Query: 628 E 628
            
Sbjct: 178 N 178

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  145 bits (369), Expect = 6e-41
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F      TI   +  K +  D ET + L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCL-LDILDTAGQ 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NK 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKS 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D     + +  A+  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  146 bits (370), Expect = 1e-40
 Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 25/201 (12%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           S +E   +  MP  R    K++++G    GKTS+  ++V   FS  Y  T+   ++ K++
Sbjct: 9   SGRENLYFQGMPLVRY--RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIV 65

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDA 559
           +   +    L L D AGQ+ +  +   +     G  +V+ VT   +F  +    Q   + 
Sbjct: 66  TLGKDEF-HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124

Query: 560 KVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612
                    +P VL+ NK D       Q  EG            +    + + E+SA++N
Sbjct: 125 H----GKTRVPVVLVGNKADLSPEREVQAVEGKK--------LAESWGAT-FMESSAREN 171

Query: 613 INIDDAAKTLVQKILENDKVQ 633
                    ++Q+I   +   
Sbjct: 172 QLTQGIFTKVIQEIARVENSY 192

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  144 bits (367), Expect = 2e-40
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 21/176 (11%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  K +  D E +  + + D AG
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQ-IDILDTAG 61

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +   Y++   G   VF +T   +F A   +++ +  +V   +   +P +L+ NK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL-RVK--EDENVPFLLVGNK 118

Query: 578 CD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D         +E              + N + + ETSAK   N+D     L+++I
Sbjct: 119 SDLEDKRQVSVEEAK--------NRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  145 bits (369), Expect = 2e-40
 Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 20/214 (9%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           MP++    Y+++V G  G GK+S++ R+V   F   Y  TI   +  +V+S D      L
Sbjct: 2   MPEQS-NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCT-L 58

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTLPDGNPI 569
           Q+ D  G  +F  M R+   +     +VF VT   + + +    +  +  K ++ D   I
Sbjct: 59  QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---I 115

Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           P +L+ NKCD+ +  +    A+     +E   + + ETSAK N N+ +  + L+      
Sbjct: 116 PVMLVGNKCDETQREVDTREAQ--AVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRR 172

Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
           +                      Q+  +     C
Sbjct: 173 NMSLNIDGK----------RSGKQKRTDRVKGKC 196

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  145 bits (367), Expect = 2e-40
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           S +E   +  M +     YK++V+G  G GK+++  + +   F   Y  TI   +  K +
Sbjct: 9   SGRENLYFQGMTE-----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQV 62

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
             D ET + L + D AGQE +  M   Y +   G   VF +  + +F  +  +++ +   
Sbjct: 63  VIDGETCL-LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK-- 119

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
             + D + +P VL+ NKCD P   +    A   E  K +    + ETSAK    ++DA  
Sbjct: 120 -RVKDSDDVPMVLVGNKCDLPTRTVDTKQAH--ELAKSYGIP-FIETSAKTRQGVEDAFY 175

Query: 621 TLVQKILENDKVQAN 635
           TLV++I +    + N
Sbjct: 176 TLVREIRQYRMKKLN 190

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  144 bits (364), Expect = 3e-40
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K++++GE   GK+SI+ R+V   F+ +   TIG  F  + ++ +  T+ + ++WD AGQ
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTV-KFEIWDTAGQ 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   YY+ A  A +V+DVT+  +F     W ++L  +        I   L+ NK 
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIALVGNKI 118

Query: 579 DQPKEGIAN--NPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           D  +EG        + ++  +E     +FETSAK   N++D    + +KI  
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGEKIPL 169

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  144 bits (365), Expect = 4e-40
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 25/196 (12%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           MP  +    KI ++G    GK+S+  ++V   F   Y  TI   F  K+++ + +    L
Sbjct: 1   MPQSKS--RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYH-L 56

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTLPDGNPI 569
           QL D AGQ+ +    + Y  +  G  +V+ VT   +F+ +       LD          I
Sbjct: 57  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV----GKVQI 112

Query: 570 PCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTL 622
           P +L+ NK D         +EG A          +  N + + E+SAK+N    D  + +
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKA--------LAESWNAA-FLESSAKENQTAVDVFRRI 163

Query: 623 VQKILENDKVQANGDS 638
           + +  + D   + G S
Sbjct: 164 ILEAEKMDGACSQGKS 179

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  143 bits (363), Expect = 8e-40
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 23/195 (11%)

Query: 445 VSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH 504
           +S           L+K++++G  G GK+++  ++++  F   Y  T    +  K +  D 
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTL 563
           E +  + + D AGQE +  +   Y++   G   VF +T   +F A   +++  L  K   
Sbjct: 64  EEVQ-IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK--- 119

Query: 564 PDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616
            +   +P +L+ NK D         +E             ++ N + + ETSAK   N+D
Sbjct: 120 -EDENVPFLLVGNKSDLEDKRQVSVEEAK--------NRAEQWNVN-YVETSAKTRANVD 169

Query: 617 DAAKTLVQKILENDK 631
                L+++I     
Sbjct: 170 KVFFDLMREIRARKM 184

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  142 bits (361), Expect = 2e-39
 Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 20/217 (9%)

Query: 449 SKMPDKREF--LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
           +  P  +    L+K++++G  G GK+++  ++++  F   Y  T    +  K +  D E 
Sbjct: 3   ANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEE 61

Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPD 565
           +  + + D AGQE +  +   Y++   G   VF +T   +F A   + +Q L  K    +
Sbjct: 62  VQ-IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK----E 116

Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
              +P +L+ NK D   +  ++   AK     ++ N + + ETSAK   N+D     L++
Sbjct: 117 DENVPFLLVGNKSDLEDKRQVSVEEAK--NRAEQWNVN-YVETSAKTRANVDKVFFDLMR 173

Query: 625 KILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNC 661
           +I       +   +           R S   +    C
Sbjct: 174 EIRARKMEDSKEKNGKK-------KRKSLAKRIRERC 203

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  140 bits (355), Expect = 9e-39
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 11/183 (6%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M       +K++V+G  G GK+++  +++  +F   Y  TI  D   K+ S D      L
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPAR-L 59

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPI 569
            + D AGQE FG M   Y +   G  +VF +    +F+ V K   Q L  K    D +  
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK----DRDDF 115

Query: 570 PCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           P VL+ NK D   +  +  + A    F   H+ + +FE SAK  +N+D+A + LV+ + +
Sbjct: 116 PVVLVGNKADLESQRQVPRSEAS--AFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRK 172

Query: 629 NDK 631
             +
Sbjct: 173 YQE 175

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  139 bits (354), Expect = 9e-39
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 24/177 (13%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           +YK+L++G  G GK+++ + +             G  +  + +  D E    L ++DI  
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYD-RSIVVDGEEAS-LMVYDIWE 58

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLAN 576
           Q+    +            IV+ VT   +F+   +   Q   A+      + +P +L+ N
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR----QTDDVPIILVGN 114

Query: 577 KCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D          EG A             +   + ETSA  + N+    + +V++I
Sbjct: 115 KSDLVRSREVSVDEGRA--------CAVVFDCK-FIETSAALHHNVQALFEGVVRQI 162

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  139 bits (352), Expect = 1e-38
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI   +  K +  D +  + L++ D AG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCM-LEILDTAGT 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+F  M  +Y K   G  +V+ +T  +TF+ +   ++ +  +V   D   +P +L+ NKC
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL-RVK--DTEDVPMILVGNKC 118

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D         ++G            ++     + E+SAK  IN+++    LV++I
Sbjct: 119 DLEDERVVGKEQGQN--------LARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  140 bits (354), Expect = 1e-38
 Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  K +  D ET + L + D AGQ
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCL-LDILDTAGQ 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ +  +++ +     + D   +P VL+ NKC
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKC 119

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDS 638
           D P   +    A+  +  + +    + ETSAK    +DDA  TLV++I ++ +  +    
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGK 176

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  139 bits (352), Expect = 2e-38
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 20/175 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           Y++ V G  G GK+S++ R+V   F   Y  T+   +  +V+S D      LQ+ D  G 
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICT-LQITDTTGS 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +F  M R+   +     +V+ +T   + + +    + +       D   IP +L+ NKC
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE--IKGDVESIPIMLVGNKC 119

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D       Q  E  A          +    + + ETSAK N N+ +  + L+   
Sbjct: 120 DESPSREVQSSEAEA--------LARTWKCA-FMETSAKLNHNVKELFQELLNLE 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  137 bits (347), Expect = 8e-38
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 23/176 (13%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  DF  K +  D    + L++ D AG 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSV-LEILDTAGT 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTLPDGNPIPCVLLANK 577
           E+F +M  +Y K   G  +V+ +    +F  +   +   +  K        +P +L+ NK
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK----RYEKVPVILVGNK 117

Query: 578 CD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D          EG            +E     + ETSAK    +D+    +V+++
Sbjct: 118 VDLESEREVSSSEGR--------ALAEEWGCP-FMETSAKSKTMVDELFAEIVRQM 164

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  137 bits (347), Expect = 1e-37
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 10/182 (5%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S +P +    YK++V+G+ G GK+++  ++  + F   Y  TI  D  LK    D++  I
Sbjct: 9   SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAI 67

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
            L + D AGQE F  M   Y +   G  IV+ VT  A+F+ V ++ Q +  +V   D   
Sbjct: 68  -LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL-RVK--DRES 123

Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDN-INIDDAAKTLVQKI 626
            P +L+ANK D      +  +  K  E   ++N   + ETSAKD  +N+D     LV+ I
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

Query: 627 LE 628
            +
Sbjct: 181 RQ 182

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  134 bits (340), Expect = 1e-36
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 24/186 (12%)

Query: 458 LYKILVIGELGAGKTSIIKRYVH-QFFSPHYRATIGVDFALKVLSWDHET--IIRLQLWD 514
            Y++++IGE G GK+++   +             +G D   + L  D E+  II L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
             G+  +  +     +      IV+ +T  A+F+   + +  L           IP +L+
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR---RARQTEDIPIILV 120

Query: 575 ANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            NK D          EG A       +FI         ETSA    N+ +  + +V+++ 
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFI---------ETSAAVQHNVKELFEGIVRQVR 171

Query: 628 ENDKVQ 633
                +
Sbjct: 172 LRRDSK 177

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  133 bits (338), Expect = 2e-36
 Identities = 35/187 (18%), Positives = 72/187 (38%), Gaps = 25/187 (13%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           LY+++++G+ G GKTS+   +  +     +   +G D   + L+ D E    L + D   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTT-LVVVDTWE 61

Query: 518 QERFGN--MTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLL 574
            E+           +      IV+ +    +F++  +   Q           + +P +L+
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH----QADHVPIILV 117

Query: 575 ANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
            NK D         +EG A             +   + ETSA    N+ +  + +V+++ 
Sbjct: 118 GNKADLARCREVSVEEGRA--------CAVVFDCK-FIETSATLQHNVAELFEGVVRQLR 168

Query: 628 ENDKVQA 634
              +  A
Sbjct: 169 LRRRDSA 175

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  133 bits (337), Expect = 4e-36
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 27/207 (13%)

Query: 436 SITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDF 495
           S       E   +  M    E   K+ + G  G GK++++ R++ + F   Y  T+   +
Sbjct: 8   SSGVDLGTENLYFQSMAKSAE--VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65

Query: 496 ALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ 555
                + D E +  +++ D AGQE        + +   G  +V+D+T   +F+ VL  K 
Sbjct: 66  R-HQATIDDEVVS-MEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKN 122

Query: 556 D-LDAKVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFET 607
              + K        +  +L+ NK D         +EG             E   + ++E 
Sbjct: 123 ILDEIK----KPKNVTLILVGNKADLDHSRQVSTEEGEK--------LATELACA-FYEC 169

Query: 608 SAKDN-INIDDAAKTLVQKILENDKVQ 633
           SA     NI +    L +++     VQ
Sbjct: 170 SACTGEGNITEIFYELCREVRRRRMVQ 196

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  133 bits (336), Expect = 5e-36
 Identities = 35/194 (18%), Positives = 78/194 (40%), Gaps = 21/194 (10%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           SS   + Y + P+      K+ ++G L +GK++++ RY+   +     +  G  F  K +
Sbjct: 8   SSGRENLYFQGPE-----LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEI 60

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
             D ++ + L + D  G          +         VF +    +F  V  +   L   
Sbjct: 61  VVDGQSYL-LLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLC-- 112

Query: 561 VTLPDGNPIPCVLLANKCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617
            +  + + +P VL+  +          I ++ A+  +   +     ++ET A   +N++ 
Sbjct: 113 -SFRNASEVPMVLVGTQDAISAANPRVIDDSRAR--KLSTDLKRCTYYETCATYGLNVER 169

Query: 618 AAKTLVQKILENDK 631
             + + QK++   K
Sbjct: 170 VFQDVAQKVVALRK 183

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  129 bits (327), Expect = 5e-35
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 12/178 (6%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
             ++ V+G+  +GK+S+I R++   +      T    +  K +  D +T + + + + AG
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHL-VLIREEAG 63

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD-AKVTLPDGNPIPCVLLAN 576
                     +   A     VF +    +F AV +    L   +     G  +  V   +
Sbjct: 64  APDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118

Query: 577 KCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           +        + +  A+      +     ++ET A   +N+D   + + QK++   K Q
Sbjct: 119 RISASSPRVVGDARAR--ALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  138 bits (349), Expect = 7e-35
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 17/191 (8%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI- 507
                      K+ +IG+  AGKTS++K+ + + F P    T G++   K          
Sbjct: 32  KGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEN 91

Query: 508 ------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV 561
                      WD  GQE      + +   +    ++ D     T      W + ++   
Sbjct: 92  DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKY- 147

Query: 562 TLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621
               G   P +++ NK D+          KI+E         +   S K+   ++  AK+
Sbjct: 148 ----GGKSPVIVVMNKIDENPS-YNIEQKKINERFPAIENR-FHRISCKNGDGVESIAKS 201

Query: 622 LVQKILENDKV 632
           L   +L  D +
Sbjct: 202 LKSAVLHPDSI 212

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  129 bits (327), Expect = 1e-34
 Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 29/201 (14%)

Query: 439 NGSSKEVSPYSKMPDKR-EFLYKILVIGELGAGKTSIIKRY--VHQFFSPHYRATIGVDF 495
           N   + +S  S +  +     Y++++IGE G GK+++   +  VH          +G D 
Sbjct: 17  NLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDT 75

Query: 496 ALKVLSWDHET--IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW 553
             + L  D E+  II L +W+  G+  +  +     +      IV+ +T  A+F+   + 
Sbjct: 76  YERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL 133

Query: 554 KQDL-DAKVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWF 605
           +  L  A+        IP +L+ NK D          EG A             +   + 
Sbjct: 134 RIQLRRAR----QTEDIPIILVGNKSDLVRCREVSVSEGRA--------CAVVFDCK-FI 180

Query: 606 ETSAKDNINIDDAAKTLVQKI 626
           ETSA    N+ +  + +V+++
Sbjct: 181 ETSAAVQHNVKELFEGIVRQV 201

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  128 bits (324), Expect = 2e-34
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 21/176 (11%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
             + ++G  GAGK+++  +++ + F   Y   +   ++    + DH+ +  L++ D A  
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVH-LRVMDTADL 79

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           +   N  R Y   A    +V+ V    +FD+   + + L         + IP +LL NK 
Sbjct: 80  DTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS-IPALLLGNKL 137

Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI-NIDDAAKTLVQKI 626
           D          EG+A                 +FE SA  +  ++       V++ 
Sbjct: 138 DMAQYRQVTKAEGVA--------LAGRFGC-LFFEVSACLDFEHVQHVFHEAVREA 184

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  108 bits (272), Expect = 2e-27
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRA-----------TIGVDFALKVLS 501
             RE  +KI+  G   +GKT+ + ++++       +            T+  DF    + 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 502 WDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD-AK 560
                  R  L+ + GQ  +    ++  +   G   V D             +   +   
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
                 + +P V+  NK D P    A     +   +         E  A +   + +  K
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184

Query: 621 TLVQKILEN 629
            + + +L  
Sbjct: 185 EVSRLVLAR 193

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  100 bits (250), Expect = 2e-24
 Identities = 40/201 (19%), Positives = 84/201 (41%), Gaps = 13/201 (6%)

Query: 436 SITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDF 495
           S    +  +++  +   +  +   KI+V+G+   GKT ++  +        Y  T+  +F
Sbjct: 1   SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60

Query: 496 ALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWK 554
           +  +  + +E    L LWD AGQE +  +  + Y ++    + F V    +FD +  KW+
Sbjct: 61  SHVM-KYKNEEF-ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE 118

Query: 555 QDLDAKVTLPDGNPIPCVLLANKCD---QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611
            ++  K  +        VL+  K D      + +     + D+  ++     + E S+  
Sbjct: 119 PEI--KHYIDT---AKTVLVGLKVDLRKDGSDDV--TKQEGDDLCQKLGCVAYIEASSVA 171

Query: 612 NINIDDAAKTLVQKILENDKV 632
            I +++  +  V  I  N  V
Sbjct: 172 KIGLNEVFEKSVDCIFSNKPV 192

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 95.9 bits (239), Expect = 4e-23
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 19/189 (10%)

Query: 450 KMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIR 509
            M   R    K + +G+   GKT ++  Y    F   Y  T+  +F+   +  +  T+  
Sbjct: 2   SMSASRFI--KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATV-N 57

Query: 510 LQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNP 568
           L LWD AGQE +  +  + Y+ A    + F +   A+++ V  KW  +L  K   P    
Sbjct: 58  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPG--- 112

Query: 569 IPCVLLANKCD---QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
           +P VL+  K D     +  I +         + +E  K      + E S+K   N+    
Sbjct: 113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

Query: 620 KTLVQKILE 628
              ++ +L+
Sbjct: 173 DAAIRVVLQ 181

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 22/190 (11%)

Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
           SS  V   S M   R    K++++G+   GKT ++  +    F   Y  T+  +  +  +
Sbjct: 11  SSGLVPRGSHMAAIR---KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADI 66

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDA 559
             D + +  L LWD AGQE +  +  + Y +     + F +    + + +  KW  ++  
Sbjct: 67  EVDGKQV-ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-- 123

Query: 560 KVTLPDGNPIPCVLLANKCD--QPKEGIANNPAKIDEFI---------KEHNFSGWFETS 608
           K   P+   +P +L+ NK D  Q +           E +            +  G+ E S
Sbjct: 124 KHFCPN---VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180

Query: 609 AKDNINIDDA 618
           AK    + + 
Sbjct: 181 AKTKEGVREV 190

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 17/193 (8%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S M   +    K + +G+   GKT ++  Y    F   Y  T+  +F+  V + D + + 
Sbjct: 2   SHMSVSKFI--KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIV- 57

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGN 567
            L LWD AGQE +  +  + Y+ A    + F +   A+++ VL KW  +L  +   P+  
Sbjct: 58  NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL--RRFAPN-- 113

Query: 568 PIPCVLLANKCD--QPKEGIANNPAKID-----EFIKEHNFSGWFETSAKDNINIDDAAK 620
            +P VL+  K D    K  +A++   I      E  K+   + + E S+K   N+     
Sbjct: 114 -VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172

Query: 621 TLVQKILENDKVQ 633
           T ++ +L+  + +
Sbjct: 173 TAIKVVLQPPRRK 185

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 94.1 bits (234), Expect = 4e-22
 Identities = 38/205 (18%), Positives = 83/205 (40%), Gaps = 21/205 (10%)

Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
           N   + ++     P  R    K++++G+ G GKTS++  +    F   Y  T+   + + 
Sbjct: 17  NLYFQSMAGEEAPPGVRSV--KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN 74

Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
           +     + +  L +WD AGQ+ +  +  ++Y +A    + FDVT   +FD +  +W  ++
Sbjct: 75  L-QVKGKPV-HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132

Query: 558 DAKVTLPDGNPIPCVLLANKCD--QPKEGIANNPAKIDEFI---------KEHNFSGWFE 606
                      +P +++  K D  + K  +        E +         +      + E
Sbjct: 133 --NHFCKK---VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187

Query: 607 TSAKDNINIDDAAKTLVQKILENDK 631
            SA+ + N+    +   +  L +  
Sbjct: 188 CSARLHDNVHAVFQEAAEVALSSRG 212

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 92.1 bits (229), Expect = 1e-21
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 21/191 (10%)

Query: 441 SSKEVSPYSKM--PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
           SS  V   S M     +    K +V+G+   GKT ++  Y    F   Y  T+  +++  
Sbjct: 11  SSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN 70

Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
           V   D + +  L LWD AGQE +  +  + Y +     I F +   A+F+ V  KW  ++
Sbjct: 71  V-MVDGKPV-NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128

Query: 558 DAKVTLPDGNPIPCVLLANKCD-----QPKEGIANN------PAKIDEFIKEHNFSGWFE 606
             +   P+    P +L+  K D        E +           +     KE     + E
Sbjct: 129 --RHHCPN---TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183

Query: 607 TSAKDNINIDD 617
            SA     +  
Sbjct: 184 CSALTQRGLKT 194

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 91.7 bits (228), Expect = 2e-21
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 24/204 (11%)

Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
           + SS  V   S M   +    KI+V+G+   GKT+++  +    F  +Y  T+  ++   
Sbjct: 9   HHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 68

Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
               D + I  L LWD +G   + N+  + Y ++    I FD++R  T D+VL KWK ++
Sbjct: 69  F-EIDTQRI-ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126

Query: 558 DAKVTLPDGNPIPCVLLANKCD-----QPKEGIANN------PAKIDEFIKEHNFSGWFE 606
             +   P+      +L+  K D          ++N+        +     K+   + + E
Sbjct: 127 --QEFCPN---TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181

Query: 607 TSAKDNIN-----IDDAAKTLVQK 625
            SA  + N        A    V K
Sbjct: 182 CSALQSENSVRDIFHVATLACVNK 205

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 91.0 bits (226), Expect = 4e-21
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 19/171 (11%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++V+G+   GKT ++  +    F   Y  T+  ++   +   D + +  L LWD AGQE
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQV-ELALWDTAGQE 84

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y +     + F V    + + +  KW  ++  K   P+   +P +L+ANK 
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPN---VPIILVANKK 139

Query: 579 D--QPKEGIANNPAKIDEFI---------KEHNFSGWFETSAKDNINIDDA 618
           D    +           E +                + E SAK    + + 
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV 190

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 87.9 bits (218), Expect = 4e-20
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K +++G+   GKTS++  Y    +   Y  T   D    V+S D   + RLQL D AGQ
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPV-RLQLCDTAGQ 78

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANK 577
           + F  +  + Y       + F V   ++F  V  KW  ++  +   P     P +L+  +
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI--RCHCPK---APIILVGTQ 133

Query: 578 CD-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D     +    +                 +E   + + E SA    N+ +     +   
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193

Query: 627 LENDKVQ 633
           ++    Q
Sbjct: 194 IQYSDTQ 200

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 24/183 (13%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+   GKT+++  +    F  +Y  T+  ++       D + I  L LWD +G  
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRI-ELSLWDTSGSP 66

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            + N+  + Y ++    I FD++R  T D+VL KWK ++  +   P+      +L+  K 
Sbjct: 67  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPN---TKMLLVGCKS 121

Query: 579 D-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNIN-----IDDAAKTL 622
           D          ++N+        +     K+   + + E SA  + N        A    
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181

Query: 623 VQK 625
           V K
Sbjct: 182 VNK 184

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
           S        + K +V+G+   GKT ++  Y +  F   Y  T+  D     ++   +   
Sbjct: 9   SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY- 66

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGN 567
            L L+D AGQE +  +  + Y       I F V   A+F  V  +W  +L  K   P+  
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL--KEYAPN-- 122

Query: 568 PIPCVLLANKCDQPKEGIANN-----------PAKIDEFIKEHNFSGWFETSAKDNINID 616
            +P +L+  + D   +                  +  +  KE     + E SA     + 
Sbjct: 123 -VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181

Query: 617 DAAKTLVQKILE 628
                 +  IL 
Sbjct: 182 TVFDEAIIAILT 193

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 84.0 bits (208), Expect = 6e-19
 Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 19/186 (10%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K +V+G+   GKT ++  Y    F   Y  T+  D     +  D + +  L LWD AGQE
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPV-NLGLWDTAGQE 64

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +  +  + Y +   + I F +   A+F+ V  KW  ++  +   P+    P +L+  K 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--RHHCPN---TPIILVGTKL 119

Query: 579 D-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D        E +           +     KE     + E SA     +       ++ +L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 628 ENDKVQ 633
               V+
Sbjct: 180 CPPPVK 185

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 75.7 bits (186), Expect = 9e-16
 Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 20/172 (11%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++G++  GKT++++      +   Y  T+  ++    L  + + +  L LWD +G  
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRV-ELSLWDTSGSP 86

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKC 578
            + N+  + Y ++    + FD++R  T D+ LK W+ ++      P       +L+  K 
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--LDYCPS---TRVLLIGCKT 141

Query: 579 D-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDN-INIDDA 618
           D          +++         +     K+     + E SA  +  +I   
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 77.0 bits (189), Expect = 2e-15
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           P       K+L++G  G+GK+S+       + S      +G    ++         + L 
Sbjct: 1   PLGS----KLLLMGRSGSGKSSMRSIIFSNY-SAFDTRRLGATIDVEHSHLRFLGNMTLN 55

Query: 512 LWDIAGQERFGNMT-----RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
           LWD  GQ+ F            ++       VFDV        +  + + L     L   
Sbjct: 56  LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ---LRKY 112

Query: 567 NP-IPCVLLANKCD-----QPKEGIANNPAKIDEFIKEHNFSGW--FETSAKDNINIDDA 618
           +P     +L +K D     + +E        + E   E  F     F TS  D  ++  A
Sbjct: 113 SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKA 171

Query: 619 AKTLVQKILEN 629
              +V  ++ N
Sbjct: 172 WSQIVCSLIPN 182

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 73.9 bits (181), Expect = 7e-15
 Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 78/240 (32%)

Query: 459 YKILVIG---------ELGAGKTSIIKRYVHQF---FSPHYRATIG-VDFALKVLSWDHE 505
           Y I V+G         + G GK+ +  R+V      F   + + +   DF  +V++ DH 
Sbjct: 20  YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHF 79

Query: 506 TI-------------IRLQLW-------DIAGQERFGNMTRVYYKEAV------------ 533
                           ++ +        D   Q       + Y K A             
Sbjct: 80  LYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMY 139

Query: 534 -------------------------GAFIVFDVTRAA--TFDAVLKWKQDLDAKVTLPDG 566
                                    G  +  DV+R     FD  LK+  +L  ++     
Sbjct: 140 FCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AK 196

Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
              P V++  KCD+  E    +       + + N     ETSA+ N+N+D A  TLVQ I
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHT--FALSKKNLQ-VVETSARSNVNVDLAFSTLVQLI 253

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 30/195 (15%)

Query: 442 SKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFA 496
           +        +P  R+   ++L++G   AGKTSI+ R      V     P    T+G    
Sbjct: 8   ASLKQTLGLLPADRK--IRVLMLGLDNAGKTSILYRLHLGDVVTT--VP----TVG--VN 57

Query: 497 LKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
           L+ L + +   I  ++WD+ GQ       R Y+ +      V D T           K +
Sbjct: 58  LETLQYKN---ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA---KHE 111

Query: 557 LDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKD 611
           L A +   +      ++ ANK D P    A + A+I E      I    ++   ++S+K 
Sbjct: 112 LYALLDEDELRKSLLLIFANKQDLPD---AASEAEIAEQLGVSSIMNRTWT-IVKSSSKT 167

Query: 612 NINIDDAAKTLVQKI 626
              + +    LV+++
Sbjct: 168 GDGLVEGMDWLVERL 182

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
                 +    +IL++G   +GK+SI K   H+  SP+    +     +      + + +
Sbjct: 14  LYFQGSK---PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFV 69

Query: 509 RLQLWDIAGQERFGNMT---RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL-DAKVTLP 564
             Q+WD  GQ  F + T    + ++       V D       +A+ +    +  A    P
Sbjct: 70  NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKVNP 128

Query: 565 DGNPIPCVLLANKCD-----QPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINI 615
           D   +   +  +K D        E   +   + ++ + +          + TS  D+ +I
Sbjct: 129 D---MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SI 184

Query: 616 DDAAKTLVQKIL 627
            +A   +VQK++
Sbjct: 185 FEAFSKVVQKLI 196

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 30/191 (15%)

Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVL 500
           S +S++  K++   +IL++G   AGKT+I+ +      V     P    TIG  F ++ +
Sbjct: 19  SLFSRIFGKKQ--MRILMVGLDAAGKTTILYKLKLGEIVTT--IP----TIG--FNVETV 68

Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
            + +   I   +WD+ GQ++   + R Y++   G   V D               +L   
Sbjct: 69  EYKN---ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES---ADELQKM 122

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINI 615
           +   +      ++ ANK D P    A   +++ +      ++   +     T A     +
Sbjct: 123 LQEDELRDAVLLVFANKQDMPN---AMPVSELTDKLGLQHLRSRTWYV-QATCATQGTGL 178

Query: 616 DDAAKTLVQKI 626
            D    L  ++
Sbjct: 179 YDGLDWLSHEL 189

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 30/183 (16%)

Query: 454 KREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVLSWDHETII 508
            RE   +IL++G  GAGKT+I+ R      V     P    TIG  F ++ +++ +   +
Sbjct: 5   TRE--MRILILGLDGAGKTTILYRLQVGEVVTT--IP----TIG--FNVETVTYKN---L 51

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           + Q+WD+ G        R YY        V D             K +L A +   +   
Sbjct: 52  KFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS---KSELVAMLEEEELRK 108

Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLV 623
              V+ ANK D  +   A   +++        +K+  +   F+TSA     +D+A + LV
Sbjct: 109 AILVVFANKQDMEQ---AMTSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLV 164

Query: 624 QKI 626
           + +
Sbjct: 165 ETL 167

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 17/185 (9%)

Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
           S       K E   ++ ++G   +GKT+ +       F+     T+G  F ++ ++  + 
Sbjct: 12  SGLVPRGSKEE--MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN- 66

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
             + ++LWDI GQ RF +M   Y +      IV+ +  AA  + +   K +L   +  P 
Sbjct: 67  --VTIKLWDIGGQPRFRSMWERYCRGVSA--IVY-MVDAADQEKIEASKNELHNLLDKPQ 121

Query: 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG--W--FETSAKDNINIDDAAKT 621
              IP ++L NK D P    A +  ++ E +            +  S K+  NID   + 
Sbjct: 122 LQGIPVLVLGNKRDLPG---ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178

Query: 622 LVQKI 626
           L+Q  
Sbjct: 179 LIQHS 183

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 26/181 (14%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRL 510
           +RE   ++L++G   AGKT+I+K++  +     SP    T+G  F +K L        +L
Sbjct: 16  ERE--LRLLMLGLDNAGKTTILKKFNGEDVDTISP----TLG--FNIKTLEHRG---FKL 64

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
            +WD+ GQ+   +  R Y++   G   V D             +++L + +         
Sbjct: 65  NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGAT 121

Query: 571 CVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
            ++ ANK D P    A +   I E      I+ H++      SA    ++      L+  
Sbjct: 122 LLIFANKQDLPG---ALSCNAIQEALELDSIRSHHWR-IQGCSAVTGEDLLPGIDWLLDD 177

Query: 626 I 626
           I
Sbjct: 178 I 178

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 28/177 (15%)

Query: 460 KILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           +IL++G   AGKT+I+ +      V     P    TIG  F ++ + + +   I   +WD
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT--IP----TIG--FNVETVEYKN---ISFTVWD 50

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           + GQ++   + R Y++   G   V D       +     +++L   +   +      ++ 
Sbjct: 51  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA---REELMRMLAEDELRDAVLLVF 107

Query: 575 ANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           ANK D P    A N A+I +      ++  N+     T A     + +    L  ++
Sbjct: 108 ANKQDLPN---AMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLDWLSNQL 160

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 26/191 (13%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHE 505
            ++ + +E  +K++++G   AGKT+I+ ++        SP    TIG    ++ +  ++ 
Sbjct: 9   WRLFNHQE--HKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIG--SNVEEIVINN- 59

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
              R  +WDI GQE   +    YY       +V D T           +++L   +   D
Sbjct: 60  --TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHED 114

Query: 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAK 620
                 ++ ANK D  +       A+I +F     IK+H +       A     +    +
Sbjct: 115 LRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLE 170

Query: 621 TLVQKILENDK 631
            ++ ++    +
Sbjct: 171 WMMSRLKIRLE 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 22/181 (12%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRY-VHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
            +E    +L +G   +GKT+II +       S +   TIG  F+++         +   +
Sbjct: 19  SKE--VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTV 71

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD--GNPIP 570
           +D++GQ R+ N+   YYKE      V D +           K++LD  +  PD     IP
Sbjct: 72  FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA---KEELDTLLNHPDIKHRRIP 128

Query: 571 CVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
            +  ANK D      A    K+ +      IK+  +     + A     + +    L  +
Sbjct: 129 ILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWH-ICASDAIKGEGLQEGVDWLQDQ 184

Query: 626 I 626
           I
Sbjct: 185 I 185

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 26/186 (13%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRL 510
            +E   +IL++G   AGKT+++K+   +     +P    T G  F +K +        +L
Sbjct: 14  DQE--VRILLLGLDNAGKTTLLKQLASEDISHITP----TQG--FNIKSVQSQG---FKL 62

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
            +WDI GQ +     R Y++       V D      F+      Q+L   +     + +P
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTELLEEEKLSCVP 119

Query: 571 CVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
            ++ ANK D      A   ++I E      I++  +      SA     + D    + + 
Sbjct: 120 VLIFANKQDLLT---AAPASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWVCKN 175

Query: 626 ILENDK 631
           +    K
Sbjct: 176 VNAKKK 181

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 24/180 (13%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRL 510
            +E   +IL++G  GAGKT+I+ R          P    TIG  F ++ LS+ +   ++L
Sbjct: 16  NKE--LRILILGLDGAGKTTILYRLQIGEVVTTKP----TIG--FNVETLSYKN---LKL 64

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
            +WD+ GQ       R YY +      V D T            ++L   +   +     
Sbjct: 65  NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA---SKELHLMLQEEELQDAA 121

Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINIDDAAKTLVQKI 626
            ++ ANK DQP    A + +++ + +              +SA     I +    L+  I
Sbjct: 122 LLVFANKQDQPG---ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 30/183 (16%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRY-----VHQFFSPHYRATIGVDFALKVLSWDHETII 508
            +E  +K++++G   AGKT+I+ ++     VH   SP    TIG    ++ +  ++    
Sbjct: 19  SQE--HKVIIVGLDNAGKTTILYQFSMNEVVHT--SP----TIG--SNVEEIVINN---T 65

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           R  +WDI GQE   +    YY       +V D T           +++L   +   D   
Sbjct: 66  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHEDLRK 122

Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLV 623
              ++ ANK D  +       A+I +F     IK+H +       A     +    + ++
Sbjct: 123 AGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMM 178

Query: 624 QKI 626
            ++
Sbjct: 179 SRL 181

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 25/235 (10%)

Query: 409 FTSPNSSSNGEKE--TAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGE 466
              P     G+ +       + +      +   G          + +  + L K +V+G+
Sbjct: 104 HLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGD 163

Query: 467 LGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTR 526
              GKT ++  Y    F P        D     +  D + +  L LWD AG E +  +  
Sbjct: 164 GAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPV-NLGLWDTAGLEDYDRLRP 221

Query: 527 VYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCD-----Q 580
           + Y +     I F +   A+F  V  KW  ++  +   P+    P +L+  K D      
Sbjct: 222 LSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--RHHCPN---TPIILVGTKLDLRDDKD 276

Query: 581 PKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDD----AAKTLVQK 625
             E +           +     KE     + E SA     +      A + ++  
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 21/182 (11%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           +L++G    GK+SI K   H    P     +              T+I L + ++ GQ  
Sbjct: 2   VLLMGVRRCGKSSICKVVFHN-MQPLDTLYLEST--SNPSLEHFSTLIDLAVMELPGQLN 58

Query: 521 FG--NMTRVYYKEAVGAFI-VFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLAN 576
           +   +       ++VGA + V D       +A+      ++        NP I   +L +
Sbjct: 59  YFEPSYDSERLFKSVGALVYVIDSQD-EYINAITNLAMIIEY---AYKVNPSINIEVLIH 114

Query: 577 KCD-----QPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINIDDAAKTLVQKIL 627
           K D        +   +   +  E + E    G     + TS  D+ +I +A   +VQK++
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI 173

Query: 628 EN 629
             
Sbjct: 174 PE 175

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 45/194 (23%)

Query: 454 KREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVLSWDHETII 508
            +    K+L +G   AGKT+++              P    T       + L+  +   I
Sbjct: 21  NKH--GKLLFLGLDNAGKTTLLHMLKNDRLAT--LQP----TWH--PTSEELAIGN---I 67

Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVF-----DVTRAATFDAVLKWKQDLDAKVTL 563
           +   +D+ G  +   + + Y+ E  G  IVF     D  R    +A    + +LDA   +
Sbjct: 68  KFTTFDLGGHIQARRLWKDYFPEVNG--IVFLVDAADPERFD--EA----RVELDALFNI 119

Query: 564 PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG---------W--FETSAKDN 612
            +   +P V+L NK D P    A + A++   +   N +G            F  S    
Sbjct: 120 AELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176

Query: 613 INIDDAAKTLVQKI 626
               +A + L Q I
Sbjct: 177 NGYLEAFQWLSQYI 190

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 34/194 (17%), Positives = 70/194 (36%), Gaps = 40/194 (20%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLW 513
           K+    K++ +G   AGKT+++           +  T+      + L+      +    +
Sbjct: 23  KKT--GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG---MTFTTF 74

Query: 514 DIAGQERFGNMTRVYYKEAVGAFIVF-----DVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
           D+ G  +   + + Y     G  IVF     D  R    ++    K++LD+ +T      
Sbjct: 75  DLGGHIQARRVWKNYLPAING--IVFLVDCADHERLL--ES----KEELDSLMTDETIAN 126

Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG--------------W--FETSAKDN 612
           +P ++L NK D+P+   A +  ++ E    +  +                  F  S    
Sbjct: 127 VPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR 183

Query: 613 INIDDAAKTLVQKI 626
               +  + + Q I
Sbjct: 184 QGYGEGFRWMAQYI 197

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 15/138 (10%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
            I++ G   +GKTS++         P    +     A             + L D  G  
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDG------SGVTLVDFPGHV 102

Query: 520 RFGNMTRVYYKEAVGAF--IVFDV---TRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           +       Y K        ++F V             ++  D+ +       N I  ++ 
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162

Query: 575 ANKCDQPKEGIANNPAKI 592
            NK +      A  P+KI
Sbjct: 163 CNKSELFT---ARPPSKI 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 57/349 (16%), Positives = 107/349 (30%), Gaps = 112/349 (32%)

Query: 376 DVKSPSDLKKEILS-------ITTPIVTEAGR--------KKHNEPKPFT----SPN--- 413
           D K   D+ K ILS       I +                K+    + F       N   
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 414 -SSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYS-----KMPDKREFLYK------I 461
             S    ++   S  T +   +       ++  + Y+          R+ L +      +
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 462 LVIGELGAGKTSII------KRYVHQFFSPHYRATIG----VDFALKVL---------SW 502
           L+ G LG+GKT +        +   +     +   +      +  L++L         +W
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 503 ----DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD-VTRAATFDAVLKWKQDL 557
               DH + I+L++  I  + R    ++ Y        +V   V  A  ++A      +L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAF-----NL 264

Query: 558 DAK--VTLPDGNPIPCV------------------------LLANKC------DQPKEGI 585
             K  +T         +                        LL  K       D P+E +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVL 323

Query: 586 ANNP---AKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKILEN 629
             NP   + I E I++    +  W       ++N  D   T+++  L  
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNW------KHVNC-DKLTTIIESSLNV 365

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 88/627 (14%), Positives = 158/627 (25%), Gaps = 235/627 (37%)

Query: 46  SVFSLSSQSDQSEKSPRKTSISSPEEKQKRRRFSFLSDKTEKLARKLSISSEKLDKKSAK 105
           S+ S   + D    S               R F  L  K E++ +K     E++ + + K
Sbjct: 44  SILS-KEEIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRINYK 92

Query: 106 QSTEKVNEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKT 165
                +  +  + S + ++     D  ++ +                      F+K   +
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--------------------FAKYNVS 132

Query: 166 KEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEESSE 225
           + +P  K                              L+ + L +L    +P        
Sbjct: 133 RLQPYLK------------------------------LR-QALLEL----RPAKNV---- 153

Query: 226 DTMDGKNG-GKSKKKGGKTKFKKIVPVEPSALASPNTIPDTPPTPQNS-KVF-LEKEREV 282
             +DG  G GK+                   +A  +         +   K+F L      
Sbjct: 154 -LIDGVLGSGKT------------------WVAL-DVCLSYKVQCKMDFKIFWL------ 187

Query: 283 KEREGEQQEGGSVTSSPSITPTPPTQSDTSLLSTPAQSQDLDSATDNDETYDTPMGTSPN 342
                      ++ +           S  ++L      Q L    D       P  TS +
Sbjct: 188 -----------NLKNC---------NSPETVL---EMLQKLLYQID-------PNWTSRS 217

Query: 343 SSVMN-QAPGDSDQDLDVTLKENTELPSAAAAASDVKSPSDLKK-----EILSITT--PI 394
               N +    S Q     L ++    +      +V++           +IL +TT    
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQ 276

Query: 395 VTE---AGRKKH----NEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSP 447
           VT+   A    H    +     T          E       S++                
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT--------PDEVK-----SLLLKYLDC---------R 314

Query: 448 YSKMPDKREFLYKI--LVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
              +P  RE L       +        SII   +         AT   D    V      
Sbjct: 315 PQDLP--REVL-TTNPRRL--------SIIAESIRDG-----LATW--DNWKHVNCDKLT 356

Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
           TII   L  +   E      R  +        VF                        P 
Sbjct: 357 TIIESSLNVLEPAE-----YRKMFDR----LSVF------------------------PP 383

Query: 566 GNPIP----CVLLANKCDQPKEGIANNPAK---IDEFIKEHNFS---GWFETSAKDNINI 615
              IP     ++  +        + N   K   +++  KE   S    + E   K     
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK----- 438

Query: 616 DDAAKTLVQKILENDKVQANGDSHATS 642
            +    L + I+++  +    DS    
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLI 465

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 15/139 (10%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           I++ G   +GKTS++         P    +     A             + L D  G  +
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDG------SGVTLVDFPGHVK 67

Query: 521 FGNMTRVYYKEAVGAF--IVFDV---TRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
                  Y K        ++F V             ++  D+ +       N I  ++  
Sbjct: 68  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127

Query: 576 NKCDQPKEGIANNPAKIDE 594
           NK +      A  P+KI +
Sbjct: 128 NKSELFT---ARPPSKIKD 143

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
             +L +G   +GKT +  R +   +      +I    +  +   ++     L L D+ G 
Sbjct: 8   RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGH 64

Query: 519 ERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD--GNPIPCVLLA 575
           E     +   +   A    +VF V  AA    V    + L   +       N    ++  
Sbjct: 65  ESLRFQLLDRFKSSARA--VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGW 604
           NK D      A +   I + +++   +  
Sbjct: 123 NKQDIAM---AKSAKLIQQQLEKELNTLR 148

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 505 ETI----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
           ET+    I   +WD+ GQ++   + R Y++   G   V D       +     +++L   
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA---REELMRM 258

Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINI 615
           +   +      ++ ANK D P    A N A+I +      ++  N+     T A     +
Sbjct: 259 LAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGL 314

Query: 616 DDAAKTLVQKI 626
            +    L  ++
Sbjct: 315 YEGLDWLSNQL 325

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           IP V++ NK D   E       ++    +    +     SA      DD    + + I E
Sbjct: 141 IPFVVVVNKIDVLGE----KAEELKGLYESRYEAKVLLVSALQKKGFDD----IGKTISE 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	663
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.97
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.96
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.96
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.95
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.94
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.93
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.93
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.93
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.93
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.93
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.93
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.93
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.93
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.87
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.92
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.91
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.9
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.9
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.89
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.89
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.89
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.89
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.87
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.86
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.84
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.84
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.84
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.83
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.83
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.79
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.79
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.78
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.78
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.78
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.78
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.78
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.78
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.78
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.77
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.76
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.76
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.76
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.76
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.76
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.75
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.75
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.75
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.75
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.75
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.74
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.74
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.74
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.73
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.73
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.73
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.72
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.72
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.72
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.72
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.71
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.71
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.7
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.7
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.7
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.69
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.69
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.69
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.69
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.68
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.68
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.67
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.66
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.66
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.63
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.63
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.63
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.62
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.59
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.59
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.59
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.58
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.56
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.55
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.55
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.52
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.52
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.51
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.48
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.48
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.48
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.47
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.46
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.42
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.39
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.37
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.33
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.29
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.28
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.25
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.24
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.2
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.09
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.09
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.99
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.97
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.85
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.83
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.79
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.75
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.68
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.47
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.36
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.12
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.91
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.87
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.85
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.79
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.69
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.61
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.6
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.56
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.44
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.35
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.32
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.19
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.84
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.7
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.65
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.56
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.25
2xxa_A	433	Signal recognition particle protein; protein trans	95.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.38
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.33
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	95.28
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.13
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.69
3end_A	307	Light-independent protochlorophyllide reductase ir	94.58
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.31
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.94
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.69
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	93.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.5
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.5
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.34
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.28
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	93.2
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.06
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	92.57
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	92.53
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.51
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.41
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	92.39
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.18
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	92.14
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	92.13
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	91.99
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	91.97
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	91.87
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	91.81
4a74_A	231	DNA repair and recombination protein RADA; hydrola	91.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	91.76
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	91.75
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.57
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	91.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	91.51
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	91.49
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	91.4
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	91.38
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.37
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	91.28
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.24
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	91.24
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	91.15
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	91.07
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	91.07
3co5_A	143	Putative two-component system transcriptional RES	91.07
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	91.05
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	91.04
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	90.98
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	90.92
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	90.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	90.87
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	90.84
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	90.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	90.79
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	90.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	90.59
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	90.54
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	90.45
1g6h_A	257	High-affinity branched-chain amino acid transport	90.41
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	90.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.3
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	90.29
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	90.25
1sgw_A	214	Putative ABC transporter; structural genomics, P p	90.24
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	90.23
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	90.18
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	90.16
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	90.16
1ji0_A	240	ABC transporter; ATP binding protein, structural g	90.15
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	90.09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	90.08
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	90.07
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	90.02
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	90.02
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	89.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	89.94
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	89.93
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	89.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	89.9
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	89.9
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	89.81
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	89.77
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	89.74
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	89.64
2ghi_A	260	Transport protein; multidrug resistance protein, M	89.62
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	89.53
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	89.48
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	89.45
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	89.44
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	89.37
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	89.35
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	89.31
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	89.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	89.29
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	89.27
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	89.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	89.03
2eyu_A	261	Twitching motility protein PILT; pilus retraction	89.01
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	88.89
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	88.89
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	88.86
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	88.8
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	88.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	88.73
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	88.67
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	88.66
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	88.61
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	88.59
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	88.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	88.53
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	88.51
2cvh_A	220	DNA repair and recombination protein RADB; filamen	88.5
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	88.49
3bos_A	242	Putative DNA replication factor; P-loop containing	88.45
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	88.45
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	88.35
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	88.34
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	88.28
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	88.27
1via_A	175	Shikimate kinase; structural genomics, transferase	88.24
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	88.2
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	88.2
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	88.16
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	88.15
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	88.03
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	88.01
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	87.9
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	87.89
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	87.89
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	87.82
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	87.75
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	87.73
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	87.66
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	87.63
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	87.61
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	87.58
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	87.55
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	87.47
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	87.46
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	87.43
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	87.41
3kta_A	182	Chromosome segregation protein SMC; structural mai	87.37
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	87.26
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	87.25
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	87.24
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	87.2
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	87.13
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	86.98
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	86.88
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	86.84
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	86.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	86.71
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	86.71
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	86.63
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	86.62
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	86.59
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	86.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	86.55
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	86.55
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	86.52
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	86.47
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	86.43
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	86.4
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	86.39
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	86.36
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	86.29
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	86.19
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	86.18
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	86.18
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	86.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	86.11
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	86.11
1xp8_A	366	RECA protein, recombinase A; recombination, radior	85.99
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	85.93
2vli_A	183	Antibiotic resistance protein; transferase, tunica	85.9
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	85.78
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	85.72
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	85.67
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	85.61
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	85.61
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	85.31
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	85.26
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	85.24
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	85.22
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	85.18
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	85.04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	85.04
2og2_A	359	Putative signal recognition particle receptor; nuc	85.0
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	84.98
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	84.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	84.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	84.72
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	84.71
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	84.7
2ewv_A	372	Twitching motility protein PILT; pilus retraction	84.6
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	84.37
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	84.25
2fna_A	357	Conserved hypothetical protein; structural genomic	83.99
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	83.83
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	83.83
3fwy_A	314	Light-independent protochlorophyllide reductase I	83.77
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	83.58
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	83.42
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	83.37
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	83.36
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	83.35
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	83.26
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	83.11
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	83.1
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	83.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	83.05
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	82.93
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	82.62
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	82.55
1p9r_A	418	General secretion pathway protein E; bacterial typ	82.48
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	82.42
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	82.18
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	81.94
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	81.93
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	81.55
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	81.5
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	81.48
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	81.39
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	81.33
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	81.13
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	81.06
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	80.9
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	80.86
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	80.84
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	80.46
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	80.44
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	80.22
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	80.21

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.3e-38  Score=313.80  Aligned_cols=198  Identities=29%  Similarity=0.511  Sum_probs=144.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      .+.|||+|||+.|||||||++||+.+.|...|.+|+|.+|..+.+.+++. .+.|+||||+||++|+.++..||++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~-~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSC-EEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecce-EEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34599999999999999999999999999999999999999999999887 79999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+..+.    ..++|+||||||+||.+.+ .+..+++.+++..+++ .||||||++|.||
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~----~~~~piilVgNK~Dl~~~r-~V~~~e~~~~a~~~~~-~~~e~SAktg~nV  163 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGNKTDLADKR-QVSIEEGERKAKELNV-MFIETSAKAGYNV  163 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEEBTTTTBSH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhc----CCCCeEEEEeeccchHhcC-cccHHHHhhHHHHhCC-eeEEEeCCCCcCH
Confidence            99999999999999999999998753    3579999999999998877 8999999999999996 7999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094         616 DDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC  663 (663)
Q Consensus       616 eELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C  663 (663)
                      +++|+.|++.|...........   .....+.+.....+.++++||||
T Consensus       164 ~e~F~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~C~C  208 (216)
T 4dkx_A          164 KQLFRRVAAALPGMESTQDRSR---EDMIDIKLEKPQEQPVSEGGCSC  208 (216)
T ss_dssp             HHHHHHHHHHC-------------------------------------
T ss_pred             HHHHHHHHHHHHhhhccccccc---ccccccccCCCCCCCCCCCCCce
Confidence            9999999999876554332211   11223344444445566778888

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=8.4e-32  Score=254.89  Aligned_cols=172  Identities=35%  Similarity=0.657  Sum_probs=156.3

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|+.++..+++++|+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK-TVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE-EEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            456799999999999999999999999999999999999999888888876 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ +||+|||++|.|
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g  157 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYA----TSTVLKLLVGNKCDLKDKR-VVEYDVAKEFADANKM-PFLETSALDSTN  157 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-CEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            999999999999999999999988653    3468999999999998766 6778889999999885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~  633 (663)
                      |+++|.+|++.+..+....
T Consensus       158 i~~l~~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          158 VEDAFLTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999998876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.98  E-value=5.9e-32  Score=254.43  Aligned_cols=176  Identities=34%  Similarity=0.612  Sum_probs=154.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR-LVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC-EEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE-EEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            456799999999999999999999999999999999999999999988876 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.......++|+|||+||+|+.. + .+..+++..++......+||+|||++|.|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-R-QVATKRAQAWCYSKNNIPYFETSAKEAIN  161 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-C-CSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-c-ccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            999999999999999999999988765433335789999999999973 3 56788888888844446899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~  633 (663)
                      |+++|++|++.+..+....
T Consensus       162 i~~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          162 VEQAFQTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccc
Confidence            9999999999998876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=244.02  Aligned_cols=170  Identities=23%  Similarity=0.397  Sum_probs=150.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCE-EEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            3468999999999999999999999998888888888665 455666665 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||+++..+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|.||
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi  164 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQWNV-NYVETSAKTRANV  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTT---CSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEECTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEeccCccccc-cccHHHHHHHHHHhCC-eEEEEeCCCCCCH
Confidence            999999999999999999999887532   3469999999999998765 6788899999999985 8999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy4094         616 DDAAKTLVQKILENDKV  632 (663)
Q Consensus       616 eELFe~IIr~Ile~~k~  632 (663)
                      +++|.+|++.+..++..
T Consensus       165 ~~l~~~l~~~i~~~~~~  181 (206)
T 2bov_A          165 DKVFFDLMREIRARKME  181 (206)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccc
Confidence            99999999999876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=2.3e-30  Score=236.58  Aligned_cols=176  Identities=32%  Similarity=0.592  Sum_probs=143.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++...+.+.|||++|+++|..++..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            45679999999999999999999999999999999999999999998885446899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.......++|+|||+||+|+......+..+++.+++...+..+|++|||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            99999999999999999999999877654445679999999999996544467788899999855556899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4094         615 IDDAAKTLVQKILEND  630 (663)
Q Consensus       615 VeELFe~IIr~Ile~~  630 (663)
                      |+++|++|++.++.++
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.97  E-value=6.4e-30  Score=243.63  Aligned_cols=172  Identities=32%  Similarity=0.588  Sum_probs=146.5

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.+|++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK-RVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE-EEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE-EEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            4567799999999999999999999999998889999999998888888875 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++..||+|||++|.
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          104 GAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGNKSDLSELR-EVSLAEAQSLAEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             EEEEEEETTBHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCcccccc-ccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            9999999999999999999999998753    3569999999999998765 6788899999999996589999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy4094         614 NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k  631 (663)
                      ||+++|++|++.+..+..
T Consensus       179 gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          179 NVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            999999999999986543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=2e-30  Score=239.56  Aligned_cols=172  Identities=33%  Similarity=0.662  Sum_probs=126.6

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAM   82 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE-EEEEEEEEC---------CCTTTTTCS
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence            3456799999999999999999999999888889999999999888888775 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ +||+|||++|.
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  156 (183)
T 2fu5_C           83 GIMLVYDITNEKSFDNIRNWIRNIEEHA----SADVEKMILGNKCDVNDKR-QVSKERGEKLALDYGI-KFMETSAKANI  156 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEEC--CCSCC-CSCHHHHHHHHHHHTC-EEEECCC---C
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccCCccC-cCCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999999999999999999998653    2469999999999998766 6778899999999995 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy4094         614 NIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~  632 (663)
                      ||+++|.+|++.+..+...
T Consensus       157 ~i~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          157 NVENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhc
Confidence            9999999999999876554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.97  E-value=2.2e-29  Score=234.36  Aligned_cols=173  Identities=33%  Similarity=0.648  Sum_probs=156.8

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ...+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-TIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE-EEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34467799999999999999999999999999999999999999999998876 68899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g  163 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTTKK-VVDYTTAKEFADSLGI-PFLETSAKNA  163 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-CEEEECTTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccccccc-ccCHHHHHHHHHHcCC-cEEEEeCCCC
Confidence            99999999999999999999999998653    3478999999999998766 6788899999999995 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhh
Q psy4094         613 INIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k~  632 (663)
                      .||+++|++|++.+..+...
T Consensus       164 ~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          164 TNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             TTHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999877553

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.97  E-value=2.2e-29  Score=229.53  Aligned_cols=167  Identities=31%  Similarity=0.614  Sum_probs=151.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTE-EEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCe-EEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            456799999999999999999999999998889999999998888888775 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|.|
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  164 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKADLEAQR-DVTYEEAKQFAEENGL-LFLEASAKTGEN  164 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            999999999999999999999988653    2468999999999997655 6778899999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy4094         615 IDDAAKTLVQKILE  628 (663)
Q Consensus       615 VeELFe~IIr~Ile  628 (663)
                      |+++|++|++.+++
T Consensus       165 i~~l~~~l~~~i~~  178 (179)
T 1z0f_A          165 VEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998854

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=3.1e-29  Score=229.30  Aligned_cols=172  Identities=30%  Similarity=0.574  Sum_probs=150.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE-EEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCE-EEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            346799999999999999999999999999899999999998888888875 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.......++|+|||+||+|+. .+ .+..+++.+++......+|++|||++|.|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ER-QVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SC-SSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-cc-ccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            99999999999999999999999877654445679999999999997 33 57888999999855556899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4094         615 IDDAAKTLVQKILEN  629 (663)
Q Consensus       615 VeELFe~IIr~Ile~  629 (663)
                      |+++|++|++.++.+
T Consensus       161 i~~l~~~l~~~~~~~  175 (177)
T 1wms_A          161 VAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=231.74  Aligned_cols=172  Identities=34%  Similarity=0.660  Sum_probs=153.3

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ...+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|++++..++..+++++
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~   82 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE-KVKLQIWDTAGQERFRTITSTYYRGT   82 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE-EEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE-EEEEEEEcCCCchhhhhhHHHHhccC
Confidence            34567899999999999999999999999999899999999999999998876 68999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|||++++.+|+.+..|+..+...+     .++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|
T Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~  155 (181)
T 3tw8_B           83 HGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILVGNKNDDPERK-VVETEDAYKFAGQMGI-QLFETSAKEN  155 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHC-----TTSEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCCCchhc-ccCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            99999999999999999999999998653     469999999999998766 6778889999999996 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhh
Q psy4094         613 INIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k~  632 (663)
                      .||+++|++|++.+...+..
T Consensus       156 ~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          156 VNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             BSHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=4.1e-29  Score=230.76  Aligned_cols=169  Identities=30%  Similarity=0.445  Sum_probs=151.3

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .....+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQ-WAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCc-EEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            345679999999999999999999999999999999998777 667777765 688999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC-CC
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK-DN  612 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK-tG  612 (663)
                      ++|+|||++++.+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||+ +|
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  166 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDLMHLR-KVTRDQGKEMATKYNI-PYIETSAKDPP  166 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHT---SSCCCEEEEEECTTCSTTC-CSCHHHHHHHHHHHTC-CEEEEBCSSSC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECCCchhcc-CcCHHHHHHHHHHhCC-eEEEeccCCCC
Confidence            99999999999999999999998876532   3568999999999998766 7888999999999994 89999999 99


Q ss_pred             cCHHHHHHHHHHHHHhh
Q psy4094         613 INIDDAAKTLVQKILEN  629 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~  629 (663)
                      .||+++|++|++.+.++
T Consensus       167 ~~v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          167 LNVDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             BSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhhC
Confidence            99999999999988653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=235.10  Aligned_cols=172  Identities=32%  Similarity=0.604  Sum_probs=154.8

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ...+..+||+|+|+.|||||||+++|++..+...+.++++.++..+.+.+++. .+.+.|||++|+++|..++..+++++
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA-AVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTE-EEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34567899999999999999999999999999889999999998888888765 68999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|||++++.+|+.+..|+..+..+    ...++|+|||+||+|+...+ .+..+++..++..+++ .||+|||++|
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~  172 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGNKSDLSQAR-EVPTEEARMFAENNGL-LFLETSALDS  172 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEECTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECCCccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            9999999999999999999999988753    23579999999999997655 5778889999999885 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhh
Q psy4094         613 INIDDAAKTLVQKILENDK  631 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k  631 (663)
                      .||+++|++|++.++++..
T Consensus       173 ~gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          173 TNVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             TTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            9999999999999987643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.97  E-value=2e-29  Score=232.78  Aligned_cols=172  Identities=33%  Similarity=0.604  Sum_probs=155.4

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ...+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++
T Consensus         5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~   83 (186)
T 2bme_A            5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDTAGQERFRSVTRSYYRGA   83 (186)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence            34567799999999999999999999999999999999999999888888875 68899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|
T Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (186)
T 2bme_A           84 AGALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILCGNKKDLDADR-EVTFLEASRFAQENEL-MFLETSALTG  157 (186)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEecCCCC
Confidence            99999999999999999999999887653    2568999999999997655 6778889999999985 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhh
Q psy4094         613 INIDDAAKTLVQKILENDK  631 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k  631 (663)
                      .||+++|++|++.+..+..
T Consensus       158 ~gi~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          158 ENVEEAFVQCARKILNKIE  176 (186)
T ss_dssp             TTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            9999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=2.9e-29  Score=235.35  Aligned_cols=171  Identities=32%  Similarity=0.624  Sum_probs=150.1

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK-QIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE-EEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEECCCchhhhhhHHHHhccCC
Confidence            3456799999999999999999999999998888999999998888888876 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  169 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIMLIGNKSDLESRR-DVKREEGEAFAREHGL-IFMETSAKTAC  169 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCCcc-ccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            9999999999999999999999998653    3579999999999997655 6778899999999985 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy4094         614 NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k  631 (663)
                      ||+++|++|++.+.++..
T Consensus       170 gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          170 NVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999987643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-30  Score=246.51  Aligned_cols=173  Identities=31%  Similarity=0.602  Sum_probs=145.9

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++||||+|+++|..++..+++.+|+
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK-RIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTE-EEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEECCCccchhhhHHHHhccCCE
Confidence            456799999999999999999999999999899999999999888888875 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.|
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g  162 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENA----DDNVAVGLIGNKSDLAHLR-AVPTEESKTFAQENQL-LFTETSALNSEN  162 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHC----C--CEEEEEECCGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCCC-CCC
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            999999999999999999999998653    3468999999999997655 6778889999999885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~~  634 (663)
                      |+++|++|++.+..+.....
T Consensus       163 i~~l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          163 VDKAFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHHHHhhhcc
Confidence            99999999999988776544

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.97  E-value=6e-30  Score=234.22  Aligned_cols=171  Identities=28%  Similarity=0.429  Sum_probs=151.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++...+.++|||++|+++|..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            35699999999999999999999999888888899999999999998875468999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      |+|||++++.+|+.+..|+..+..+...  ..+.| +|||+||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~~iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  159 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEE--SETQPLVALVGNKIDLEHMR-TIKPEKHLRFCQENGF-SSHFVSAKTGDS  159 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHH--HTCCCEEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcc--cCCCCeEEEEEEcccccccc-ccCHHHHHHHHHHcCC-cEEEEeCCCCCC
Confidence            9999999999999999999988865321  11345 89999999997765 6778899999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4094         615 IDDAAKTLVQKILEND  630 (663)
Q Consensus       615 VeELFe~IIr~Ile~~  630 (663)
                      |+++|++|++.++...
T Consensus       160 i~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          160 VFLCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999987653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.97  E-value=3e-29  Score=226.21  Aligned_cols=165  Identities=27%  Similarity=0.549  Sum_probs=149.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT-TVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45699999999999999999999999998888999999998888888775 68999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+....    ..++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|.||
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi  156 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQA----SPNIVIALSGNKADLANKR-AVDFQEAQSYADDNSL-LFMETSAKTSMNV  156 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCcccc-ccCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Confidence            99999999999999999999888652    3579999999999997655 5778889999998885 8999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         616 DDAAKTLVQKIL  627 (663)
Q Consensus       616 eELFe~IIr~Il  627 (663)
                      +++|++|++.+.
T Consensus       157 ~~l~~~i~~~~~  168 (170)
T 1r2q_A          157 NEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988663

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=1.7e-29  Score=228.97  Aligned_cols=167  Identities=31%  Similarity=0.559  Sum_probs=144.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK-RVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC-EEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCE-EEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            346799999999999999999999999998889999999998888888876 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..++.    .++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|.|
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  155 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKIDLEKER-HVSIQEAESYAESVGA-KHYHTSAKQNKG  155 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHG----GGSEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEEBTTTTBS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECccccccc-ccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence            9999999999999999999998886542    458999999999997765 6778899999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy4094         615 IDDAAKTLVQKILE  628 (663)
Q Consensus       615 VeELFe~IIr~Ile  628 (663)
                      |+++|++|++.+++
T Consensus       156 i~~l~~~l~~~~~~  169 (170)
T 1z08_A          156 IEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.97  E-value=5.4e-29  Score=228.44  Aligned_cols=168  Identities=30%  Similarity=0.552  Sum_probs=150.9

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTE-EEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCE-EEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            456699999999999999999999999999888999999998888888775 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g  161 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALAGNKSDLLDAR-KVTAEDAQTYAQENGL-FFMETSAKTATN  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-EEEECCSSSCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccc-cCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence            999999999999999999999988652    3579999999999997765 6788899999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4094         615 IDDAAKTLVQKILEN  629 (663)
Q Consensus       615 VeELFe~IIr~Ile~  629 (663)
                      |+++|++|++.+...
T Consensus       162 i~~l~~~l~~~~~~~  176 (181)
T 2efe_B          162 VKEIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=7.3e-29  Score=226.46  Aligned_cols=170  Identities=29%  Similarity=0.476  Sum_probs=150.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGI-PARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTE-EEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCE-EEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            345699999999999999999999999998889999987766 66777765 6889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g  158 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQR-QVPRSEASAFGASHHV-AYFEASAKLRLN  158 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBS
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-ccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence            999999999999999999999886543   23568999999999997765 6778889999998885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|++|++.+..+..
T Consensus       159 v~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          159 VDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.5e-29  Score=241.66  Aligned_cols=171  Identities=32%  Similarity=0.648  Sum_probs=155.2

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++||||+|+++|..++..+++++|
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE-KVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            3567799999999999999999999999999899999999999999998876 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++...++ .||+|||++|.
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~g~  174 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNKIDLAERR-EVSQQRAEEFSEAQDM-YYLETSAKESD  174 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-CEEECCTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            9999999999999999999999998653    3568999999999997655 6778889999998885 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy4094         614 NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k  631 (663)
                      ||+++|++|++.+..+..
T Consensus       175 gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          175 NVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             THHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=236.78  Aligned_cols=170  Identities=35%  Similarity=0.628  Sum_probs=145.4

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK-KIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCe-EEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            4556799999999999999999999999998889999999999999988875 688999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+....    ..++|+|||+||+|+...+ .+..+++.+++..+....|++|||++|.
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~~SA~~g~  175 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETDR-EITRQQGEKFAQQITGMRFCEASAKDNF  175 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            9999999999999999999998888652    3469999999999997665 6778889999988644689999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy4094         614 NIDDAAKTLVQKILEN  629 (663)
Q Consensus       614 NVeELFe~IIr~Ile~  629 (663)
                      ||+++|++|++.+.++
T Consensus       176 gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          176 NVDEIFLKLVDDILKK  191 (192)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=9.7e-30  Score=238.59  Aligned_cols=172  Identities=33%  Similarity=0.655  Sum_probs=156.0

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      .+.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK-RVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT-TEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE-EEEEEEEeCCChHHHHHHHHHHHccC
Confidence            34567899999999999999999999999999999999999999888888776 68899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ .||+|||++|
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~  170 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYS----WDNAQVILVGNKCDMEEER-VVPTEKGQLLAEQLGF-DFFEASAKEN  170 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            99999999999999999999999998652    3579999999999997766 6788899999999996 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhh
Q psy4094         613 INIDDAAKTLVQKILENDK  631 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~k  631 (663)
                      .||+++|++|++.+.++..
T Consensus       171 ~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          171 ISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             BSHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHhcc
Confidence            9999999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.96  E-value=5.6e-29  Score=226.62  Aligned_cols=168  Identities=18%  Similarity=0.259  Sum_probs=136.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc--hhhhHHHHHhcCcE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--FGNMTRVYYKEAVG  534 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--frsl~~~~~r~ADg  534 (663)
                      ..+||+|+|++|||||||+++|++..+...+ ++.|.++....+.+++. .+.+++||++|++.  +..++..+++.+|+
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGE-DTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTE-EEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCE-EEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            4589999999999999999999998776543 45777887888888776 68899999999988  67788889999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~g~g  155 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTH---QADHVPIILVGNKADLARCR-EVSVEEGRACAVVFDC-KFIETSATLQHN  155 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTTC-CSCHHHHHHHHHHHTS-EEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh---ccCCCCEEEEEEChhhcccc-ccCHHHHHHHHHHcCC-eEEEEecCCCCC
Confidence            999999999999999999998887531   23469999999999998766 6778888899998885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|++|++.+..++.
T Consensus       156 i~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          156 VAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=3.2e-29  Score=226.22  Aligned_cols=165  Identities=34%  Similarity=0.640  Sum_probs=150.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      +..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE-DVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE-EEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCE-EEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35699999999999999999999999999899999999999998888875 68999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+..+.     .++|+|||+||+|+...+ .+..+++.+++..+++ +|+++||++|.||
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  154 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDS-CIKNEEAEGLAKRLKL-RFYRTSVKEDLNV  154 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEECBTTTTBSS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCccc-ccCHHHHHHHHHHcCC-eEEEEecCCCCCH
Confidence            99999999999999999999988753     468999999999997655 5778889999999986 8999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy4094         616 DDAAKTLVQKILE  628 (663)
Q Consensus       616 eELFe~IIr~Ile  628 (663)
                      +++|++|++.+++
T Consensus       155 ~~l~~~l~~~~~~  167 (168)
T 1z2a_A          155 SEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=3.2e-29  Score=231.10  Aligned_cols=169  Identities=25%  Similarity=0.339  Sum_probs=149.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQ-EYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCE-EEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            468999999999999999999999999999999998777 677777775 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..++.   ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVG---KVQIPIMLVGNKKDLHMER-VISYEEGKALAESWNA-AFLESSAKENQTAV  157 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-EEEECCTTSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccchhcc-eecHHHHHHHHHHhCC-cEEEEecCCCCCHH
Confidence            99999999999999999999876532   3568999999999997766 7889999999999996 89999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy4094         617 DAAKTLVQKILENDKV  632 (663)
Q Consensus       617 ELFe~IIr~Ile~~k~  632 (663)
                      ++|++|++.+..+...
T Consensus       158 ~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          158 DVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999877643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=238.48  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=146.7

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-hHHHHHhcC
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-MTRVYYKEA  532 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-l~~~~~r~A  532 (663)
                      ..+..+||+|||++|||||||+++|++..+...+.++++.++....+.+++. .+.|+|||++|++++.. ++..+++.+
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE-EVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTE-EEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCE-EEEEEEEecCCCccchhhhHHHhhccC
Confidence            3456799999999999999999999865555456677777888888888876 78999999999998765 888999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|||||++++.+|+.+..|+..+.....   ..++|+||||||+|+...+ .+..+++..++..+++ .|++|||++|
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~Sa~~~  172 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRP---HHDLPVILVGNKSDLARSR-EVSLEEGRHLAGTLSC-KHIETSAALH  172 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHST---TSCCCEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-EEEEEBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeechhccccC-CcCHHHHHHHHHHhCC-EEEEEcCCCC
Confidence            999999999999999999999998886531   2469999999999998766 6788899999999985 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhh
Q psy4094         613 INIDDAAKTLVQKILEND  630 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~  630 (663)
                      .||+++|++|++.+..++
T Consensus       173 ~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          173 HNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             BSHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999987644

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=8.7e-29  Score=233.19  Aligned_cols=172  Identities=34%  Similarity=0.657  Sum_probs=155.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK-RIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCe-EEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            456799999999999999999999999998889999999998888888775 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ +||+|||++|.|
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  157 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYS----WDNAQVLLVGNKCDMEDER-VVSSERGRQLADHLGF-EFFEASAKDNIN  157 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS----CSSCEEEEEEECTTCTTSC-CSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCccc-ccCHHHHHHHHHHCCC-eEEEEECCCCCC
Confidence            999999999999999999999988653    3468999999999998765 6778899999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~  633 (663)
                      |+++|++|++.+..+....
T Consensus       158 i~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          158 VKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999998765543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.96  E-value=6.2e-29  Score=224.73  Aligned_cols=165  Identities=33%  Similarity=0.626  Sum_probs=143.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK-KVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC-EEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            4589999999999999999999999998899999999998888888876 689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+.. + .+..+++.+++..+++ +|++|||++|.||+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~  153 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDMET-R-VVTADQGEALAKELGI-PFIESSAKNDDNVN  153 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTT-C-CSCHHHHHHHHHHHTC-CEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCCc-C-ccCHHHHHHHHHHcCC-eEEEEECCCCCCHH
Confidence            9999999999999999999988753    24689999999999933 3 5778889999999985 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy4094         617 DAAKTLVQKILEN  629 (663)
Q Consensus       617 ELFe~IIr~Ile~  629 (663)
                      ++|++|++.+.++
T Consensus       154 ~l~~~l~~~~~~~  166 (170)
T 1g16_A          154 EIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=1.4e-28  Score=226.60  Aligned_cols=169  Identities=28%  Similarity=0.502  Sum_probs=145.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++ +.....+.+++. .+.++|||++|+++|..++..+++.+|++|
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTE-EEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCc-EEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            458999999999999999999999998888888876 445566667765 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..+.   ...++|+|||+||+|+...  .+..+++..++..+++ +|++|||++|.||+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~  154 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDLPSR--TVDTKQAQDLARSYGI-PFIETSAKTRQGVD  154 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTSSSC--SSCHHHHHHHHHHHTC-CEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccCccc--ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence            9999999999999999999988753   2356999999999999743  5778899999999995 89999999999999


Q ss_pred             HHHHHHHHHHHhhhhhh
Q psy4094         617 DAAKTLVQKILENDKVQ  633 (663)
Q Consensus       617 ELFe~IIr~Ile~~k~~  633 (663)
                      ++|++|++.+..+....
T Consensus       155 ~l~~~l~~~~~~~~~~~  171 (189)
T 4dsu_A          155 DAFYTLVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhc
Confidence            99999999998776543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=9.4e-29  Score=223.55  Aligned_cols=165  Identities=30%  Similarity=0.563  Sum_probs=149.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+.+. .+.+.|||++|+++|..++..+++++|++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe-EEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            45699999999999999999999999998889999999998888888775 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+..+    ...++|++||+||+|+...+ .+..+++..++..+++ +|++|||++|.||
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  156 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVR-EVMERDAKDYADSIHA-IFVETSAKNAINI  156 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBSH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCcccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCcCH
Confidence            9999999999999999999998864    23578999999999998755 6778889999998885 8999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         616 DDAAKTLVQKIL  627 (663)
Q Consensus       616 eELFe~IIr~Il  627 (663)
                      +++|++|++.+.
T Consensus       157 ~~l~~~i~~~i~  168 (170)
T 1z0j_A          157 NELFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-28  Score=228.58  Aligned_cols=171  Identities=37%  Similarity=0.588  Sum_probs=153.0

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .....+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN-KAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCe-EEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            4456799999999999999999999999999999999999998888888876 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..++   ...++|+|||+||+|+.. + .+..+++.+++..+++ .|++|||++|.
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKIDKEN-R-EVDRNEGLKFARKHSM-LFIEASAKTCD  163 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCC---SCSCCEEEEEEECTTSSS-C-CSCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCcEEEEEECCcCcc-c-ccCHHHHHHHHHHcCC-EEEEecCCCCC
Confidence            9999999999999999999999887542   235699999999999954 2 5678889999999985 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy4094         614 NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k  631 (663)
                      ||+++|++|++.+.....
T Consensus       164 gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          164 GVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             THHHHHHHHHHHHHTSGG
T ss_pred             CHHHHHHHHHHHHHhhhh
Confidence            999999999999987654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.96  E-value=4.4e-29  Score=226.64  Aligned_cols=166  Identities=21%  Similarity=0.233  Sum_probs=133.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-hHHHHHhcCcEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-MTRVYYKEAVGAF  536 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-l~~~~~r~ADgaI  536 (663)
                      .+||+|+|++|||||||+++|++..+...+..+.+.++....+.+++. .+.+.+||++|++++.. ++..+++++|++|
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i   80 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKE-EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL   80 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTE-EEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCe-EEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence            489999999999999999999988887777777788888888888876 78999999999999876 7888899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+.....   ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|.||+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  155 (169)
T 3q85_A           81 IVFSVTDRRSFSKVPETLLRLRAGRP---HHDLPVILVGNKSDLARSR-EVSLEEGRHLAGTLSC-KHIETSAALHHNTR  155 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHST---TSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBSHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHhccc---CCCCCEEEEeeCcchhhcc-cCCHHHHHHHHHHcCC-cEEEecCccCCCHH
Confidence            99999999999999999999887532   2469999999999998665 7888999999999996 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy4094         617 DAAKTLVQKILEN  629 (663)
Q Consensus       617 ELFe~IIr~Ile~  629 (663)
                      ++|++|++.+..+
T Consensus       156 ~l~~~l~~~i~~~  168 (169)
T 3q85_A          156 ELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=1.1e-28  Score=232.48  Aligned_cols=165  Identities=18%  Similarity=0.285  Sum_probs=142.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|+++.+...+.++.+ ++ .+.+.+++. .+.|+||||+|+++|+     +++++|++
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQ-SYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTE-EEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCE-EEEEEEEECCCChhhh-----eecCCCEE
Confidence            3569999999999999999999999999888888743 44 477888876 7899999999999887     88999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      |+|||++++.+|+.+..|+..+..+.   ...++|+||||||+|+.. ....+..+++.+++..++.+.||+|||++|.|
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFR---NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTS---CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            99999999999999999999998532   225689999999999952 22378889999999999866899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|++|++.+..+++
T Consensus       167 v~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          167 VERVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999987653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8e-29  Score=227.13  Aligned_cols=169  Identities=31%  Similarity=0.597  Sum_probs=143.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .+..+||+|+|+.|||||||+++|+++.+. ..+.++++.++....+.+++. .+.++|||++|+++|+.++..+++++|
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV-KVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE-EEEEEEEECCCC--------CCGGGCS
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            456799999999999999999999998885 577899999998888888776 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  159 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNKVDSAHER-VVKREDGEKLAKEYGL-PFMETSAKTGL  159 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECCSTTSCC-CSCHHHHHHHHHHHTC-CEEECCTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccCccc-ccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999999999999999999988753    2568999999999998765 6778889999999885 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy4094         614 NIDDAAKTLVQKILEND  630 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~  630 (663)
                      ||+++|++|++.+..+.
T Consensus       160 gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          160 NVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             THHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=6.4e-29  Score=224.06  Aligned_cols=164  Identities=31%  Similarity=0.560  Sum_probs=148.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH-TVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            489999999999999999999999998889999999998888888775 6899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--IANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |||++++.+|+.+..|+..+..+.    ..++|++||+||+|+....  ..+..+++.+++..+++ .|++|||++|.||
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA----SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence            999999999999999999988653    3569999999999986541  36788889999998885 8999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         616 DDAAKTLVQKIL  627 (663)
Q Consensus       616 eELFe~IIr~Il  627 (663)
                      +++|++|++.+.
T Consensus       157 ~~l~~~l~~~i~  168 (170)
T 1ek0_A          157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988664

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=8.8e-29  Score=231.21  Aligned_cols=168  Identities=33%  Similarity=0.668  Sum_probs=152.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK-RIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTE-EEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCe-EEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            456799999999999999999999999998889999999998888888775 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ .||+|||++|.|
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g  171 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYS----WDNAQVILVGNKCDLEDER-VVPAEDGRRLADDLGF-EFFEASAKENIN  171 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccccccc-CCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence            999999999999999999999988653    3568999999999997765 6778889999999995 899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4094         615 IDDAAKTLVQKILEN  629 (663)
Q Consensus       615 VeELFe~IIr~Ile~  629 (663)
                      |+++|++|++.+.++
T Consensus       172 i~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          172 VKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=1.6e-28  Score=225.85  Aligned_cols=167  Identities=18%  Similarity=0.233  Sum_probs=141.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|+++.+.. +.+|++.. +.+.+.+++. .+.++|||++|+++     ..|++++|++|
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~-~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQ-THLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTE-EEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCE-EEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            45899999999999999999999998876 78888744 4677777775 68999999999987     46889999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC--CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP--KEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~--der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|||++++.+|+.+..|+..+..... ....++|+||||||+|+.  ..+ .+..+++.+++..++.++||+|||++|.|
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRG-EGRGGLALALVGTQDRISASSPR-VVGDARARALXADMKRCSYYETXATYGLN  155 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHC-SSSCCCEEEEEEECTTCBTTBCC-CSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccccC-cCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence            99999999999999998777665432 223579999999999994  333 67889999999887546899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~  633 (663)
                      |+++|++|++.++..++..
T Consensus       156 i~~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          156 VDRVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999999998876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=1.6e-28  Score=221.44  Aligned_cols=164  Identities=27%  Similarity=0.480  Sum_probs=145.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQ-QCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSC-EEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCE-EEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            489999999999999999999999998888899886654 55666665 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++..++..++..+|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDER-VVGKEQGQNLARQWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHC---CSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTSCEEEECBTTTTBSHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC---cCCCcEEEEEECccccccc-cCCHHHHHHHHHHccCCcEEEecCCCCCCHHH
Confidence            9999999999999999998886542   3569999999999997765 67788999999988546899999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         618 AAKTLVQKIL  627 (663)
Q Consensus       618 LFe~IIr~Il  627 (663)
                      +|++|++.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.96  E-value=4.1e-29  Score=241.16  Aligned_cols=171  Identities=19%  Similarity=0.334  Sum_probs=147.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.+|++.++ ...+.+++. .+.++|||++|+++|..++..+++++|+
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQ-RVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--C-EEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCE-EEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            34569999999999999999999999999999999999776 456667665 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCC
Q psy4094         535 AFIVFDVTRAATFDA-VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFS  602 (663)
Q Consensus       535 aILVyDVTd~~SFe~-L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i  602 (663)
                      +|+|||++++.+|+. +..|+..+..++     .++|+||||||+|+..+           .+.+..+++.+++..+++.
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  176 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYC-----PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE  176 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHC-----TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence            999999999999999 789999998753     46999999999999753           2368899999999999976


Q ss_pred             eEEEEeCCCCcC-HHHHHHHHHHHHHhhhhh
Q psy4094         603 GWFETSAKDNIN-IDDAAKTLVQKILENDKV  632 (663)
Q Consensus       603 ~ffEtSAKtGeN-VeELFe~IIr~Ile~~k~  632 (663)
                      .|++|||++|.| |+++|++|++.++.+...
T Consensus       177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          177 IYLEGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             EEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            899999999998 999999999999876543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.96  E-value=1.4e-28  Score=226.61  Aligned_cols=174  Identities=31%  Similarity=0.555  Sum_probs=153.6

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeece-eEEEecCCc--------eeEEEEEEeCCCccchhhh
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHE--------TIIRLQLWDIAGQERFGNM  524 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~-~ktV~vdge--------~~vkLqIwDTpGQErfrsl  524 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++. .+.+.+++.        ..+.++|||++|+++|..+
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            3566799999999999999999999999998889999999887 667766643        1478999999999999999


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f  604 (663)
                      +..+++++|++|+|||++++.+++.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++.+++..+++ +|
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~  161 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY---SENPDIVLCGNKSDLEDQR-AVKEEEARELAEKYGI-PY  161 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS---SSSCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-CE
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccccccc-ccCHHHHHHHHHHcCC-CE
Confidence            99999999999999999999999999999999886532   2569999999999997765 6778899999999986 89


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                      ++|||++|.||+++|++|++.+.++...
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999876553

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.96  E-value=8.4e-29  Score=232.24  Aligned_cols=171  Identities=23%  Similarity=0.425  Sum_probs=149.8

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .....+||+|+|+.|||||||+++|+++.+...+.++++.++.. .+.+++. .+.++||||+|+++|..++..+++++|
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNE-EFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTE-EEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCE-EEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            34567999999999999999999999999988999999877754 5666665 688999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         534 GAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      ++|+|||++++.+|+.+ ..|+..+..++     .++|+|||+||+|+..+ ...+..+++.+++..+++..|++|||++
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999999997 78998888652     46999999999999753 2368889999999999975599999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhh
Q psy4094         612 NINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~~k  631 (663)
                      |.||+++|++|++.++.++.
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999987643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=2.2e-28  Score=224.38  Aligned_cols=169  Identities=23%  Similarity=0.403  Sum_probs=148.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCE-EEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            3469999999999999999999999998888888888665 445566665 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  168 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQWNV-NYVETSAKTRANV  168 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHC---CTTCCEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccccccC-ccCHHHHHHHHHHcCC-eEEEeCCCCCCCH
Confidence            999999999999999999999887643   2468999999999997765 5778899999999985 8999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|++|++.+..++.
T Consensus       169 ~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          169 DKVFFDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999976543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.96  E-value=4e-28  Score=223.91  Aligned_cols=164  Identities=30%  Similarity=0.537  Sum_probs=147.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCcee----------------------------
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI----------------------------  507 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~----------------------------  507 (663)
                      +..+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDI-NIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCc-ccccccccccccccccccccccccccccc
Confidence            45699999999999999999999999999999999999999888888764 3                            


Q ss_pred             ---------EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094         508 ---------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC  578 (663)
Q Consensus       508 ---------vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs  578 (663)
                               +.+.|||++|+++|..++..+++.+|++|+|||++++.+|+.+..|+..+..+.      ++|+|||+||+
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~  157 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI  157 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence                     789999999999999999999999999999999999999999999999988652      28999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       579 DL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      | ...+ .+..+++.+++..+++ +|++|||++|.||+++|++|++.+..+
T Consensus       158 D-~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          158 D-KNKF-QVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             T-CC-C-CSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             C-cccc-cCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            9 3333 6788999999999986 899999999999999999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=235.41  Aligned_cols=172  Identities=33%  Similarity=0.579  Sum_probs=143.6

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK-TVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTE-EEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCe-eeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            3466799999999999999999999999998889999999999888888875 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~SA~~g~  173 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLA----SPNIVVILCGNKKDLDPER-EVTFLEASRFAQENEL-MFLETSALTGE  173 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHT----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEECTTTCT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            9999999999999999999999888653    2569999999999997655 6778889999999885 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy4094         614 NIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~  632 (663)
                      ||+++|.+|++.++.+...
T Consensus       174 gi~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          174 NVEEAFLKCARTILNKIDS  192 (200)
T ss_dssp             THHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-28  Score=231.68  Aligned_cols=169  Identities=30%  Similarity=0.518  Sum_probs=150.8

Q ss_pred             CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ..++..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE-LHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS-EEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE-EEEEEEEcCCCchhhHhhhHHhhccC
Confidence            44567899999999999999999999999998889999999998888888766 68999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~  170 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMAIAGNKCDLSDIR-EVPLKDAKEYAESIGA-IVVETSAKNA  170 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTTTC-EEEECBTTTT
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            99999999999999999999999998653    3569999999999997655 6778899999999885 8999999999


Q ss_pred             cCHHHHHHHHHHHHHh
Q psy4094         613 INIDDAAKTLVQKILE  628 (663)
Q Consensus       613 eNVeELFe~IIr~Ile  628 (663)
                      .||+++|++|++.+..
T Consensus       171 ~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          171 INIEELFQGISRQIPP  186 (192)
T ss_dssp             BSHHHHHHHHHHTCC-
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999987754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=1e-28  Score=225.07  Aligned_cols=165  Identities=32%  Similarity=0.558  Sum_probs=149.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++|
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4589999999999999999999999999999999999999999988876 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||+
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNV-MFIETSAKAGYNVK  165 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEEEBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccC-cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence            9999999999999999999888653    2468999999999997665 6778889999999885 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4094         617 DAAKTLVQKILE  628 (663)
Q Consensus       617 ELFe~IIr~Ile  628 (663)
                      ++|++|++.+..
T Consensus       166 ~l~~~l~~~~~~  177 (179)
T 2y8e_A          166 QLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=232.26  Aligned_cols=171  Identities=22%  Similarity=0.341  Sum_probs=140.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|+
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGR-PVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTE-EEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCE-EEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            44569999999999999999999999988888888887555 456666665 6889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCC
Q psy4094         535 AFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFS  602 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i  602 (663)
                      +|+|||++++.+|+.+. .|+..+..++     .++|+|||+||+|+...           ...+..+++..++..+++.
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-----PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA  169 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence            99999999999999997 7999888653     36999999999999753           2367888999999999876


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                      .|++|||++|.||+++|++|++.++.....
T Consensus       170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          170 SYIECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            899999999999999999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=3.5e-28  Score=218.26  Aligned_cols=164  Identities=24%  Similarity=0.425  Sum_probs=142.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCE-EEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            48999999999999999999999998888888888665 345566665 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDKR-QVSVEEAKNRADQWNV-NYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHC---CTTSCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECccccccC-ccCHHHHHHHHHHcCC-eEEEeCCCCCCCHHH
Confidence            9999999999999999999887643   2468999999999997765 5778899999999985 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|++|++.+.+
T Consensus       157 l~~~l~~~i~~  167 (168)
T 1u8z_A          157 VFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.96  E-value=1.9e-28  Score=221.85  Aligned_cols=164  Identities=20%  Similarity=0.243  Sum_probs=120.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|++..+. ...++.+..+ ...+.+++. .+.+.+||++|+++|+.++..+++.+|++|+
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGE-EASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTE-EEEEEEEECC---------------CCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCE-EEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            489999999999999999999876554 3344555444 456666765 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+...   ....++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||++
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRA---RQTDDVPIILVGNKSDLVRSR-EVSVDEGRACAVVFDC-KFIETSAALHHNVQA  153 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHC---C---CCCEEEEEECTTCCSSC-CSCHHHHHHHHHHTTC-EEEECBGGGTBSHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEecccccccc-ccCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Confidence            99999999999999999988753   234579999999999998766 7888899999999985 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy4094         618 AAKTLVQKILEN  629 (663)
Q Consensus       618 LFe~IIr~Ile~  629 (663)
                      +|++|++.+..+
T Consensus       154 l~~~l~~~~~~~  165 (166)
T 3q72_A          154 LFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.2e-28  Score=230.04  Aligned_cols=167  Identities=26%  Similarity=0.410  Sum_probs=143.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..++|+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.||||+|+++|..++..+++.+|++|
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKS-VCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTE-EEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCE-EEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4589999999999999999999999998888888875554 44555654 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+.....  ...++|+|||+||+|+...  .+..+++..++..+++ .||+|||++|.||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKG--SVEDIPVMLVGNKCDETQR--EVDTREAQAVAQEWKC-AFMETSAKMNYNVK  159 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHS--CGGGSCEEEEEECTTCSSC--SSCHHHHHHHHHHHTC-EEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccCCcc--ccCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Confidence            99999999999999999887776432  1246899999999999762  5678888999999885 89999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy4094         617 DAAKTLVQKILEND  630 (663)
Q Consensus       617 ELFe~IIr~Ile~~  630 (663)
                      ++|++|++.+..+.
T Consensus       160 ~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          160 ELFQELLTLETRRN  173 (199)
T ss_dssp             HHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999876554

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.6e-28  Score=228.39  Aligned_cols=166  Identities=22%  Similarity=0.343  Sum_probs=147.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|+.++..+++++|++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGK-QYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSC-EEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCE-EEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            4679999999999999999999999999888889988665 556677665 68999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094         536 FIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG  603 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~  603 (663)
                      |+|||++++.+|+.+. .|+..+..++     .++|+|||+||+|+...           .+.+..+++.+++..+++..
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  168 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYA-----PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  168 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence            9999999999999997 8999988752     36999999999999763           13678899999999999768


Q ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         604 WFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       604 ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|||++|.||+++|++|++.++.
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999998863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=232.10  Aligned_cols=167  Identities=32%  Similarity=0.504  Sum_probs=138.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      +..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|++
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE-RTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTE-EEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCE-EEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45699999999999999999999999998889999999998888888876 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-----CCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-----EGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-----er~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      |+|||++++.+|+.+..|+..+....    ..++|+|||+||+|+..     ....+..+++..++..+++ .|++|||+
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~SA~  179 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-LFCETSAK  179 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-eEEEeeCC
Confidence            99999999999999999999888652    24689999999999962     2236788899999999986 89999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q psy4094         611 DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile  628 (663)
                      +|.||+++|.+|++.+..
T Consensus       180 ~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TCTTHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998854

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=2.1e-28  Score=228.68  Aligned_cols=167  Identities=35%  Similarity=0.593  Sum_probs=147.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-hhHHHHHhcCcE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-NMTRVYYKEAVG  534 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-sl~~~~~r~ADg  534 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|+ .++..+++++|+
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE-RIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE-EEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCE-EEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            35699999999999999999999999999899999999999999988875 6899999999999998 899999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC--
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN--  612 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG--  612 (663)
                      +|+|||++++.+|+.+..|+..+..++.   ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|  
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~  171 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLL---ANDIPRILVGNKCDLRSAI-QVPTDLAQKFADTHSM-PLFETSAKNPND  171 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCC---CSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-CEEECCSSSGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccccccc-eeCHHHHHHHHHHcCC-EEEEEeCCcCCc
Confidence            9999999999999999999999987642   3569999999999997665 6778889999999985 8999999999  


Q ss_pred             -cCHHHHHHHHHHHHHh
Q psy4094         613 -INIDDAAKTLVQKILE  628 (663)
Q Consensus       613 -eNVeELFe~IIr~Ile  628 (663)
                       .||+++|.+|++.+.+
T Consensus       172 ~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GSCHHHHHHHHC-----
T ss_pred             ccCHHHHHHHHHHHHhh
Confidence             9999999999988753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.96  E-value=7.1e-29  Score=235.82  Aligned_cols=169  Identities=25%  Similarity=0.416  Sum_probs=145.0

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|+.++..+++++|++|
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQ-IVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSC-EEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCE-EEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            469999999999999999999999999888889988555 456667665 689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-------CCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-------ANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-------~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      +|||++++.+|+.+. .|+..+..+.     .++|+|||+||+|+...+.       .+..+++.+++..+++..||+||
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            999999999999997 8999998652     3699999999999866431       24788899999999976899999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                      |++|.||+++|++|++.++.....
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             TTTCTTHHHHHHHHHHHHHCC---
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.96  E-value=1.4e-28  Score=229.50  Aligned_cols=166  Identities=22%  Similarity=0.401  Sum_probs=146.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSC-EEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCE-EEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            4569999999999999999999999999888899998776 455666665 68999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094         536 FIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG  603 (663)
Q Consensus       536 ILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~  603 (663)
                      |+|||++++.+|+.+ ..|+..+..++     .++|+|||+||+|+..+           .+.+..+++.+++..++...
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            999999999999999 79999888653     46899999999999742           23678899999999988668


Q ss_pred             EEEEeCC-CCcCHHHHHHHHHHHHHh
Q psy4094         604 WFETSAK-DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       604 ffEtSAK-tGeNVeELFe~IIr~Ile  628 (663)
                      |++|||+ ++.||+++|++|++.++.
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            9999999 689999999999998875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=230.65  Aligned_cols=167  Identities=20%  Similarity=0.293  Sum_probs=142.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.+|++.++ ...+.+++. .+.++|||++|+++|+.+ ..+++.+|++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQ-PVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCE-EEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            4569999999999999999999999999999999998776 445666665 689999999999999876 6799999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC-CCCcC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA-KDNIN  614 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA-KtGeN  614 (663)
                      |+|||++++.+|+.+..|+..+..++.. ...++|+|||+||+|+...+ .+..+++.+++..+++ .|++||| ++|.|
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sa~~~g~g  172 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQYR-QVTKAEGVALAGRFGC-LFFEVSACLDFEH  172 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEECCSSSCSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhcC-ccCHHHHHHHHHHcCC-cEEEEeecCcccc
Confidence            9999999999999999999998865311 11468999999999997665 6788999999999996 8999999 89999


Q ss_pred             HHHHHHHHHHHHHh
Q psy4094         615 IDDAAKTLVQKILE  628 (663)
Q Consensus       615 VeELFe~IIr~Ile  628 (663)
                      |+++|++|++.+.+
T Consensus       173 v~~lf~~l~~~i~~  186 (187)
T 3c5c_A          173 VQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.96  E-value=1.9e-28  Score=233.62  Aligned_cols=174  Identities=33%  Similarity=0.617  Sum_probs=152.5

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce---------eEEEEEEeCCCccchhhh
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET---------IIRLQLWDIAGQERFGNM  524 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~---------~vkLqIwDTpGQErfrsl  524 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++..+.+.+++..         .+.++|||++|+++|..+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            45678999999999999999999999999988899999999988887776531         478999999999999999


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f  604 (663)
                      +..+++++|++|||||++++.+|+.+..|+..+..+   ....++|+|||+||+|+...+ .+..+++.+++..+++ .|
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~---~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~  175 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNKADLPDQR-EVNERQARELADKYGI-PY  175 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-CE
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCCEEEEEECCcccccc-ccCHHHHHHHHHHCCC-cE
Confidence            999999999999999999999999999998876632   122579999999999997765 6778899999999985 79


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~k~  632 (663)
                      |+|||++|.||+++|++|++.+..+...
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999876553

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.96  E-value=1.1e-28  Score=228.44  Aligned_cols=167  Identities=18%  Similarity=0.213  Sum_probs=141.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-----------cccceeeeceeEEE-ecCCceeEEEEEEeCCCccchh
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPH-----------YRATIGVDFALKVL-SWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-----------~~~TigiDf~~ktV-~vdge~~vkLqIwDTpGQErfr  522 (663)
                      ....+||+|+|++|||||||++ ++.+.+...           +.++++.++....+ .+++. .+.++||||+|+++|+
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF-KTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSC-EEEEEEEECCSCCSCS
T ss_pred             cccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCC-ceEEEEEeCCChHHHH
Confidence            4567999999999999999995 555555555           34688888877776 56665 7899999999999999


Q ss_pred             hhHHHHHhcCcEEEEEEeCC------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy4094         523 NMTRVYYKEAVGAFIVFDVT------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI  596 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVT------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla  596 (663)
                      .++..+++++|++|+|||++      +..+|+.+..|+..+..     ...++|+|||+||+|+...   +..+++.+++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~~---~~~~~~~~~~  160 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPDA---LPVEMVRAVV  160 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTTC---CCHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhcccc---cCHHHHHHHH
Confidence            99999999999999999999      56778888888877642     3467999999999999763   6889999999


Q ss_pred             HHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         597 KEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       597 k~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      ..+++..|++|||++|.||+++|++|++.+..+..
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99986589999999999999999999999987654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5.3e-28  Score=228.41  Aligned_cols=170  Identities=33%  Similarity=0.604  Sum_probs=151.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..++|+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK-KVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTE-EEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            345699999999999999999999999998899999999999888888875 6889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..+.    ..++|+|||+||+|+. .+ .+..+++..++..+++ +||+|||++|.|
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~-~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  168 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDME-TR-VVTADQGEALAKELGI-PFIESSAKNDDN  168 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHT----TTCSEEEEEEECTTCS-SC-CSCHHHHHHHHHHHTC-CEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCc-cc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            999999999999999999999988653    2468999999999993 33 5778888999999885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKV  632 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~  632 (663)
                      |+++|.+|++.+.++...
T Consensus       169 i~~l~~~l~~~~~~~~~~  186 (213)
T 3cph_A          169 VNEIFFTLAKLIQEKIDS  186 (213)
T ss_dssp             SHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999998876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=4e-28  Score=217.66  Aligned_cols=164  Identities=24%  Similarity=0.403  Sum_probs=145.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSS-PSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCE-EEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            48999999999999999999999998888888887444 666777765 6789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+...+.   ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKR---YEKVPVILVGNKVDLESER-EVSSSEGRALAEEWGC-PFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTT---TSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTS-CEEEECTTCHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcccccc-cCCHHHHHHHHHHhCC-CEEEecCCCCcCHHH
Confidence            9999999999999999998886532   3569999999999997655 6778889999999885 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|++|++.+.+
T Consensus       156 l~~~l~~~~~~  166 (167)
T 1kao_A          156 LFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.96  E-value=2.5e-28  Score=235.00  Aligned_cols=168  Identities=22%  Similarity=0.401  Sum_probs=146.6

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++ ...+.+++. .+.++|||++|+++|..++..+++++|
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSS-EEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCE-EEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            345679999999999999999999999999988899998776 456667665 689999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCC
Q psy4094         534 GAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~  601 (663)
                      ++|+|||++++.+|+.+ ..|+..+..++     .++|+||||||+|+..+           .+.+..+++.++++.++.
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA  176 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCC
Confidence            99999999999999999 79999888653     46999999999999742           236788899999999886


Q ss_pred             CeEEEEeCC-CCcCHHHHHHHHHHHHHh
Q psy4094         602 SGWFETSAK-DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       602 i~ffEtSAK-tGeNVeELFe~IIr~Ile  628 (663)
                      ..|++|||+ +|.||+++|++|++.++.
T Consensus       177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          177 ATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            689999999 689999999999998875

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3.3e-28  Score=238.38  Aligned_cols=168  Identities=19%  Similarity=0.252  Sum_probs=140.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCC--CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHHHHHhc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFF--SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTRVYYKE  531 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~f--see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~~~~r~  531 (663)
                      ....+||+|||++|||||||+++|++...  ... .+++|.+++.+.+.+++. .+.+.+|||+|++. ++.+...|++.
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~-~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGE-SATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTE-EEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCe-eeEEEEeecCCCcchhhhHHHHHHhh
Confidence            44569999999999999999999997443  333 345788888888888876 78899999999987 66777888899


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      +|++|+|||++++.+|+.+..|+..+....   ...++|+||||||+||...+ .+..+++..++..+++ .||+|||++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~~~r-~v~~~e~~~~a~~~~~-~~~e~SAk~  186 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRCR-EVSVSEGRACAVVFDC-KFIETSAAV  186 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSG---GGTTSCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCcEEEEEEChHHhcCc-eEeHHHHHHHHHHcCC-EEEEEeCCC
Confidence            999999999999999999999998887421   12469999999999997655 6778888889988885 899999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |.||+++|++|++.+..+
T Consensus       187 g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          187 QHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=231.43  Aligned_cols=169  Identities=22%  Similarity=0.354  Sum_probs=145.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKD-EFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCE-EEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            3569999999999999999999999999999999998777 666666655 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+..+..+.   ...++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|.||
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v  174 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGH---GKTRVPVVLVGNKADLSPER-EVQAVEGKKLAESWGA-TFMESSARENQLT  174 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECCTTCHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccCcccc-ccCHHHHHHHHHHhCC-eEEEEeCCCCCCH
Confidence            99999999999999999999988542   23568999999999998766 6788899999999996 8999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|++|++.+.....
T Consensus       175 ~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          175 QGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999977644

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.95  E-value=6.3e-28  Score=221.73  Aligned_cols=166  Identities=22%  Similarity=0.348  Sum_probs=145.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTE-EEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCE-EEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            358999999999999999999999999888888887554 455666665 689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+. .|+..+..++     .++|+|||+||+|+...           ...+..+++..++..+++.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-----CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            999999999999997 7999888652     36899999999998653           136788899999999987689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ++|||++|.||+++|++|++.++..
T Consensus       157 ~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          157 LECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EEecCCCccCHHHHHHHHHHHHhcc
Confidence            9999999999999999999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.95  E-value=1.2e-27  Score=227.22  Aligned_cols=167  Identities=19%  Similarity=0.281  Sum_probs=137.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCC--CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHHHHHhcCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQF--FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTRVYYKEAV  533 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~--fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~~~~r~AD  533 (663)
                      ..+||+|||++|||||||+++|++..  +... ..++|.++..+.+.+++. .+.+.+|||+|++. ++.++..|++.+|
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGE-SATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTE-EEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCe-EEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            45899999999999999999999633  3333 345778888888888876 78899999999886 6677888999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~r-~v~~~~~~~~a~~~~~-~~~e~SA~~g~  157 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRXR-EVSVSEGRAXAVVFDX-KFIETSAAVQH  157 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCeEEEEEechhhhccc-cccHHHHHHHHHHhCC-ceEEeccccCC
Confidence            9999999999999999999998887542   23468999999999997655 6777888888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy4094         614 NIDDAAKTLVQKILEND  630 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~  630 (663)
                      ||+++|++|++.+..+.
T Consensus       158 ~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          158 NVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhc
Confidence            99999999999986544

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.9e-27  Score=223.93  Aligned_cols=167  Identities=22%  Similarity=0.346  Sum_probs=147.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++ ..++..+++.+|++|
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDE-VVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCE-EEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            458999999999999999999999999888999988665 455666665 68899999999998 888999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc-CH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI-NI  615 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe-NV  615 (663)
                      +|||++++.+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|. ||
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~g~~gi  178 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKK---PKNVTLILVGNKADLDHSR-QVSTEEGEKLATELAC-AFYECSACTGEGNI  178 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT---TSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTS-EEEECCTTTCTTCH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhC---CCCCcEEEEEECccccccc-ccCHHHHHHHHHHhCC-eEEEECCCcCCcCH
Confidence            99999999999999999998887532   3568999999999997765 6788899999999885 89999999999 99


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|++|++.+.+++.
T Consensus       179 ~~l~~~l~~~i~~~~~  194 (196)
T 2atv_A          179 TEIFYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999977543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.95  E-value=2.7e-28  Score=228.53  Aligned_cols=173  Identities=23%  Similarity=0.396  Sum_probs=112.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC--CCCCccccceeeeceeEEEecCCce-eEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALKVLSWDHET-IIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~--~fsee~~~TigiDf~~ktV~vdge~-~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      ...+||+|+|+.|||||||+++|+++  .+...+.+|++.++....+.+++.. .+.+.|||++|+++|..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999998  8888899999999999999888631 47899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      |++|+|||++++.+|+.+..|+..+..+... ...++|+|||+||+|+.. .+ .+..+++..++..+++ .|++|||++
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~  174 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPPQRH-QVRLDMAQDWATTNTL-DFFDVSANP  174 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC--------CCCHHHHHHHHHHTTC-EEEECCC--
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccchhhc-cCCHHHHHHHHHHcCC-EEEEeccCC
Confidence            9999999999999999999999999875320 024699999999999987 55 6788999999999995 899999999


Q ss_pred             -CcCHHHHHHHHHHHHHhhhh
Q psy4094         612 -NINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       612 -GeNVeELFe~IIr~Ile~~k  631 (663)
                       |.||+++|++|++.+..+..
T Consensus       175 ~~~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          175 PGKDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             -----CHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHH
Confidence             99999999999999887654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.95  E-value=1.7e-28  Score=225.31  Aligned_cols=164  Identities=23%  Similarity=0.402  Sum_probs=129.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGA-TVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCE-EEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            4589999999999999999999999988888888886553 33455554 578999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC---------CCCHHHHHHHHHHcCCCeEEE
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI---------ANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~---------~Vs~eei~qlak~~g~i~ffE  606 (663)
                      +|||++++.+|+.+. .|+..+..++     .++|+|||+||+|+...+.         .+..+++.+++..+++.+|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE  159 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999997 7999988753     3699999999999866431         257788999999999768999


Q ss_pred             EeCCCCcCHHHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Il  627 (663)
                      |||++|.||+++|++|++.++
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.4e-27  Score=215.72  Aligned_cols=165  Identities=25%  Similarity=0.421  Sum_probs=141.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.|||++|+++|..++..+++.+|++|+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKS-ICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTE-EEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCE-EEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            489999999999999999999999988888888876553 44555554 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+..+..  ...++|+|||+||+|+...+ .+...++..++..+++ +|++|||++|.||++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~pii~v~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKG--DVESIPIMLVGNKCDESPSR-EVQSSEAEALARTWKC-AFMETSAKLNHNVKE  156 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTTBSHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC--CCCCCCEEEEEEcccccccc-ccCHHHHHHHHHHhCC-eEEEecCCCCcCHHH
Confidence            9999999999999999988876532  22468999999999997655 5677888899998885 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|++|++.+..
T Consensus       157 l~~~l~~~~~~  167 (172)
T 2erx_A          157 LFQELLNLEKR  167 (172)
T ss_dssp             HHHHHHHTCCS
T ss_pred             HHHHHHHHHhh
Confidence            99999986643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.95  E-value=3.5e-27  Score=223.82  Aligned_cols=165  Identities=19%  Similarity=0.381  Sum_probs=145.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++.++.. .+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGK-QVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTE-EEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCE-EEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            46899999999999999999999999988889999877754 4666665 689999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+ ..|+..+..++     .++|+|||+||+|+....           ..+..+++..++..+++..|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence            99999999999999 68988887642     368999999999997641           25778899999999997689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      ++|||++|.||+++|++|++.+++
T Consensus       177 ~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          177 LECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=1.2e-26  Score=207.22  Aligned_cols=163  Identities=26%  Similarity=0.461  Sum_probs=143.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.+||++|+++|..++..+++.+|++|+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCE-EEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            47999999999999999999999988888888877544 555666665 6889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||+++..+|+.+..|+..+..+..   ..++|++||+||+|+.. + .+..+++.+++..+++ +++++||++|.|+++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~---~~~~p~iiv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKD---SDDVPMVLVGNKSDLAA-R-TVESRQAQDLARSYGI-PYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHT---CSCCCEEEEEECTTCSC-C-CSCHHHHHHHHHHHTC-CEEEECTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEEchhhhh-c-ccCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Confidence            9999999999999999999887542   24689999999999976 2 5678889999999985 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|++|++.+.+
T Consensus       155 l~~~l~~~~~~  165 (166)
T 2ce2_X          155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998854

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=228.59  Aligned_cols=167  Identities=22%  Similarity=0.428  Sum_probs=125.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.||||+|+++|..++..+++++|++|
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGK-PVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTE-EEEEEEEEC---------------CEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCE-EEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            468999999999999999999999988888888887554 455666665 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+. .|+..+..++     .++|+|||+||+|+...+           ..+..+++..++..+++..|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  185 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY  185 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence            999999999999997 7999888653     468999999999997642           25778889999999997689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ++|||++|.||+++|++|++.++...
T Consensus       186 ~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          186 LECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.95  E-value=1.8e-27  Score=226.99  Aligned_cols=173  Identities=33%  Similarity=0.495  Sum_probs=149.9

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+++.+...+.++++..+....+...+...+.+.||||+|++++..++..+++++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            44679999999999999999999999999888889998888777777665545889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+...+.    .++|+|||+||+|+...+ .+..+++..++...++ .||+|||++|.|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g  161 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVG----NEAPIVVCANKIDIKNRQ-KISKKLVMEVLKGKNY-EYFEISAKTAHN  161 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC----SSSCEEEEEECTTCC-----CCHHHHHHHTTTCCC-EEEEEBTTTTBT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-cEEEEecCCCCC
Confidence            9999999999999999999999987642    458999999999998765 6788888888888885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKVQ  633 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~~  633 (663)
                      |+++|++|++.+..+....
T Consensus       162 v~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          162 FGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             TTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHhcccccc
Confidence            9999999999998876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=2.7e-29  Score=237.49  Aligned_cols=169  Identities=34%  Similarity=0.675  Sum_probs=142.1

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-TIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTE-EEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCE-EEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            3456799999999999999999999999999999999999999999998876 688999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|+.+..|+..+..+    ...++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|.
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~vSA~~g~  181 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTTKK-VVDYTTAKEFADSLGI-PFLETSAKNAT  181 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-CCSSCC--C-CCCSCC-CHHHHTTTC-CBCCCCC---H
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEECccCCccc-cCCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            999999999999999999999998743    23579999999999998765 5666778889998885 79999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy4094         614 NIDDAAKTLVQKILEN  629 (663)
Q Consensus       614 NVeELFe~IIr~Ile~  629 (663)
                      ||+++|++|++.+..+
T Consensus       182 gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          182 NVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHHHHTTTTTTT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999877654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=6.9e-27  Score=222.76  Aligned_cols=166  Identities=21%  Similarity=0.374  Sum_probs=139.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++.++... +.+++. .+.+.||||+|+++|..++..+++++|++|
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGK-QVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTE-EEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCE-EEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            458999999999999999999999999888888888766543 566665 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+ ..|+..+...+     .++|+|||+||+|+....           ..+..+++..++...++..|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY  176 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence            99999999999999 68998888642     468999999999996541           25778889999999987689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ++|||++|.||+++|++|++.++..
T Consensus       177 ~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          177 LECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.95  E-value=2.6e-27  Score=226.14  Aligned_cols=163  Identities=22%  Similarity=0.335  Sum_probs=142.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++ +.....+.+++. .+.++||||+|+++|..++..+++++|++|
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGK-PVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-C-EEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCE-EEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            458999999999999999999999999888888887 445666777766 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+. .|+..+....     .++|+|||+||+|+...+           ..+..+++..++..+++.+|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence            999999999999997 8999888652     469999999999986543           13778899999999998789


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHH
Q psy4094         605 FETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~I  626 (663)
                      ++|||++|.||+++|++|++.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.95  E-value=1.3e-26  Score=216.26  Aligned_cols=169  Identities=19%  Similarity=0.311  Sum_probs=131.4

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA  532 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A  532 (663)
                      .....+||+|+|+.|||||||+++|+++.+.. .+.+|++..+  ..+...   .+.++||||+|+++|+.++..+++++
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG---RVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET---TEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC---CEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            34566899999999999999999999999988 8888888444  334332   47899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCC----CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH------HHcCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTL----PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI------KEHNFS  602 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~----~~~~~IPIILVGNKsDL~der~~Vs~eei~qla------k~~g~i  602 (663)
                      |++|+|||++++.+|+.+..|+..+......    ....++|+|||+||+|+....   ..+++....      ...+ +
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~-~  163 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMGDHP-F  163 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHTTSC-E
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhccCCe-e
Confidence            9999999999999999999999888743110    011369999999999997753   233332222      2244 5


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      .||+|||++|.||+++|++|++.+..+..
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=1.3e-27  Score=229.57  Aligned_cols=168  Identities=33%  Similarity=0.566  Sum_probs=149.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....+||+|+|+.|||||||+++|+.+.+...+.+++|.++....+.+++. .+.+.||||+|+++|..++..+++++|+
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-PIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE-EEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            456699999999999999999998888888888999999998888888876 6899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+..++     .++|+|||+||+|+....  + ..++..++...++ .||+|||++|.|
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~-~~~~~Sa~~~~g  161 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNL-QYYDISAKSNYN  161 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-----TTCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTC-EEEECBGGGTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCcccccc--c-cHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            999999999999999999999998763     368999999999997654  2 2356678888885 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy4094         615 IDDAAKTLVQKILENDKV  632 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k~  632 (663)
                      |+++|.+|++.+......
T Consensus       162 i~~l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDPNL  179 (221)
T ss_dssp             TTHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHhCccc
Confidence            999999999999877653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=2.8e-26  Score=213.48  Aligned_cols=167  Identities=28%  Similarity=0.483  Sum_probs=135.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+..+++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++|
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCC-----------CTTCSEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCE-EEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            458999999999999999999999988888888877554 455666665 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||+++..+|+.+..|+..+..+..   ..++|+|||+||+|+.. + .+..+++.+++..+++ +|++|||++|.|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  171 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKD---SDDVPMVLVGNKCDLPT-R-TVDTKQAHELAKSYGI-PFIETSAKTRQGVE  171 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHT---CSCCCEEEEEECTTCSC-C-CSCHHHHHHHHHHHTC-CEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECCcCCc-c-cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence            99999999999999999998887542   24689999999999976 2 5678899999999996 89999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy4094         617 DAAKTLVQKILENDK  631 (663)
Q Consensus       617 ELFe~IIr~Ile~~k  631 (663)
                      ++|++|++.+..++.
T Consensus       172 ~l~~~l~~~~~~~~~  186 (190)
T 3con_A          172 DAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.94  E-value=4.3e-26  Score=205.96  Aligned_cols=158  Identities=22%  Similarity=0.324  Sum_probs=125.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|+.|||||||+++|+++.+.. +.+|++  +....+.+.+   +.++|||++|+++|+.++..+++++|++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   74 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS---CEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC---EEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence            589999999999999999999887764 566766  4444555543   6899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCCCc
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKDNI  613 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKtGe  613 (663)
                      ||++++.+|+.+..|+..+...   ....++|+|||+||+|+....   ..+++......     .+ .+|++|||++|.
T Consensus        75 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  147 (164)
T 1r8s_A           75 VDSNDRERVNEAREELMRMLAE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRN-WYIQATCATSGD  147 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCC-EEEEECBTTTTB
T ss_pred             EECCCHHHHHHHHHHHHHHHhc---hhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCcc-EEEEEcccCCCc
Confidence            9999999999999999887642   123568999999999997642   33333322211     22 369999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q psy4094         614 NIDDAAKTLVQKILEN  629 (663)
Q Consensus       614 NVeELFe~IIr~Ile~  629 (663)
                      ||+++|++|++.+..+
T Consensus       148 gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          148 GLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             THHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999987543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.94  E-value=1.9e-25  Score=211.59  Aligned_cols=169  Identities=33%  Similarity=0.646  Sum_probs=148.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ++.+||+|||+.|||||||+++|++..+...+.+++|.++....+.+++. .+.+.|||++|+++|+.++..+++.++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~-~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-TIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE-EEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            45699999999999999999999999998889999999998888998886 68899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||+++..+|+.+..|+..+....    ..+.|+++|+||+|+...+ .+..++++.++...++ .|++|||+++.|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~~~-~~~d~Sal~~~~i  155 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNNL-SFIETSALDSTNV  155 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEECccccccc-CcCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Confidence            99999999999999999998876542    2468999999999997655 5677889999999885 7999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|++|.+.+.....
T Consensus       156 ~~l~~~l~~~~~~~~~  171 (199)
T 2f9l_A          156 EEAFKNILTEIYRIVS  171 (199)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.94  E-value=6.6e-26  Score=212.12  Aligned_cols=161  Identities=21%  Similarity=0.293  Sum_probs=127.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|+++.+ ..+.+++|.  ....+.+++   +.+++||++|+++|+.++..+++++|++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQG---FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEETT---EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEECC---EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            3458999999999999999999998755 346677763  344555553   6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAK  610 (663)
                      |+|||++++.+|+.+..|+..+...   ....++|+|||+||+|+....   ..+++.+....     .+ +.|++|||+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  160 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEE---EKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRV-WQIQSCSAL  160 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTC---GGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCc-eEEEEccCC
Confidence            9999999999999999998877532   123569999999999997654   33333333221     22 479999999


Q ss_pred             CCcCHHHHHHHHHHHHHhh
Q psy4094         611 DNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~  629 (663)
                      +|.||+++|++|++.+..+
T Consensus       161 ~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          161 TGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             TCTTHHHHHHHHHHTC---
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999887654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.94  E-value=9.5e-26  Score=211.39  Aligned_cols=163  Identities=22%  Similarity=0.294  Sum_probs=131.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+...+.+|++.++..  +...   .+.+.|||++|+++|..++..+++++|++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG---NVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET---TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC---CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            456999999999999999999999999988888999877653  3333   37899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKD  611 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKt  611 (663)
                      |+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+....   ..+++.......    ..+.||+|||++
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~  168 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKE  168 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence            99999999999999999998876421   22569999999999997642   333332222211    124799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |.||+++|++|++.+..+
T Consensus       169 g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          169 KDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             CTTHHHHHHHHHHTCC--
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999877543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.94  E-value=7.5e-27  Score=218.63  Aligned_cols=168  Identities=20%  Similarity=0.393  Sum_probs=126.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhC--CCCCccccceeeeceeEEEecC--CceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~--~fsee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .+||+|+|++|||||||+++|++.  .+...+.+|+|.++....+.+.  +...+.+.+||++|+++|..++..|+++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            379999999999999999999984  5667788999999877776552  112578999999999999999999999999


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHcCCC---eEEE
Q psy4094         534 GAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN---PAKIDEFIKEHNFS---GWFE  606 (663)
Q Consensus       534 gaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs---~eei~qlak~~g~i---~ffE  606 (663)
                      ++|+|||++++ .+|+.+..|+..+....     .++|+||||||+|+...+ .+.   .+.+..++..+++.   .|++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVILVGTHLDVSDEK-QRKACMSKITKELLNKRGFPAIRDYHF  155 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-----TTCEEEEEEECGGGCCHH-HHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-----CCCcEEEEEECCCcccch-hhHHHHHHHHHHHHHhcCCcchhheEE
Confidence            99999999998 58999999999987642     368999999999997643 111   23345566556652   3999


Q ss_pred             EeCCCCc-CHHHHHHHHHHHHHhhhh
Q psy4094         607 TSAKDNI-NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       607 tSAKtGe-NVeELFe~IIr~Ile~~k  631 (663)
                      |||++|. +++++++.|++.+.....
T Consensus       156 ~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          156 VNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             EecccCchhHHHHHHHHHHHHhcccc
Confidence            9999996 999999999998876543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.1e-25  Score=207.99  Aligned_cols=160  Identities=22%  Similarity=0.276  Sum_probs=128.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+. .+.+|++.  ....+.+++   +.++|||++|+++|+.++..+++++|++|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT---EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            4589999999999999999999988876 67777764  344555554   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKD  611 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKt  611 (663)
                      +|||++++.+|+.+..|+..+..+.   ...++|+|||+||+|+...   ...+++.+.+..     .+ +.|++|||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~  161 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQ-WHIQACCALT  161 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSC-EEEEECBTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhch---hhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCC-cEEEEccCCC
Confidence            9999999999999999998887532   1246999999999999763   345555555432     23 4799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |.||+++|++|++.+...
T Consensus       162 g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC-
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999987554

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.93  E-value=2.8e-25  Score=201.45  Aligned_cols=160  Identities=23%  Similarity=0.325  Sum_probs=128.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+. .+.++++..  ...+.+++   +.++|||++|+++|+.++..+++++|++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYKN---LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEETT---EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEECC---EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            4589999999999999999999998875 456676644  44555553   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHcCCCeEEEEeCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI-----KEHNFSGWFETSAKD  611 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla-----k~~g~i~ffEtSAKt  611 (663)
                      +|||++++.+|..+..|+..+....   ...++|+|||+||+|+....   ..+++....     ...+ +.|++|||++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  152 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRK-WQIFKTSATK  152 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSC-EEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhch---hhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCc-eEEEECcCCC
Confidence            9999999999999999988776421   12569999999999997643   233333322     2233 3799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |.||+++|++|++.+.++
T Consensus       153 ~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          153 GTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhhc
Confidence            999999999999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.93  E-value=5.5e-26  Score=216.40  Aligned_cols=157  Identities=17%  Similarity=0.193  Sum_probs=124.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|.++.+. .+.+|++..  ...+.+++   +.+++|||+|+++|+.++..+++++|++|+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT---EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC---EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            479999999999999999999988764 466777654  34555655   689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----------------CC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----------------NF  601 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----------------g~  601 (663)
                      |||++++.+|+.+..|+..+....   ...++|+|||+||+|+..   .+..+++.+++...                ..
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDE---TIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARP  172 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG---GGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCce
Confidence            999999999999999998887431   235699999999999976   45778888877632                23


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      +.|++|||++|.||+++|++|++.+
T Consensus       173 ~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          173 LEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHhc
Confidence            5799999999999999999998643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=209.74  Aligned_cols=164  Identities=21%  Similarity=0.288  Sum_probs=132.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC-CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF-FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ...+||+|+|+.|||||||+++|++.. +...+.+|++  +....+.+++   +.+.|||++|+++|+.++..+++++|+
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS---CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            345899999999999999999999887 5666777776  4455666664   579999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAK  610 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAK  610 (663)
                      +|+|||++++.+|+.+..|+..+...... ...++|+|||+||+|+...   +..+++.+++...    ..+.|++|||+
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA---VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC---CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            99999999999999999999888753211 1157999999999999763   3566676666421    12479999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q psy4094         611 DNINIDDAAKTLVQKILE  628 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile  628 (663)
                      +|.||+++|++|++.+..
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999987643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.93  E-value=1.9e-25  Score=207.16  Aligned_cols=161  Identities=23%  Similarity=0.308  Sum_probs=131.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++. ...+.+|++..  ...+.+++   +.++||||+|+++|+.++..+++++|++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   89 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG---FKLNIWDVGGQKSLRSYWRNYFESTDGL   89 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT---EEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            345899999999999999999999887 66777887744  44555543   6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAK  610 (663)
                      |+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+....   ..+++.+...     ..+ ++|++|||+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  162 (186)
T 1ksh_A           90 IWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGAL---SCNAIQEALELDSIRSHH-WRIQGCSAV  162 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhCh---hcCCCcEEEEEeCccCCCCC---CHHHHHHHhChhhccCCc-eEEEEeeCC
Confidence            99999999999999999988876431   23569999999999997643   3444444332     123 479999999


Q ss_pred             CCcCHHHHHHHHHHHHHhh
Q psy4094         611 DNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~  629 (663)
                      +|.||+++|++|++.+.++
T Consensus       163 ~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          163 TGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999988664

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.93  E-value=1.6e-25  Score=211.54  Aligned_cols=157  Identities=21%  Similarity=0.226  Sum_probs=129.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|.++.+. .+.+|++..  ...+.+++   +.+++|||+|+++++.++..+++++|++|
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT---EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            3479999999999999999999998875 466677654  45566655   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----------CCCeEE
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-----------NFSGWF  605 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-----------g~i~ff  605 (663)
                      +|||++++.+|+.+..|+..+....   ...++|+|||+||+|+..   .+..+++.+++...           ..+.|+
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVF  169 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred             EEEECCChHHHHHHHHHHHHHHcch---hhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEE
Confidence            9999999999999999998887431   235699999999999976   35667777766532           235799


Q ss_pred             EEeCCCCcCHHHHHHHHHHH
Q psy4094         606 ETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~  625 (663)
                      +|||++|+||+++|++|++.
T Consensus       170 ~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          170 MCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EeECCcCCCHHHHHHHHHhh
Confidence            99999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.93  E-value=1.4e-25  Score=208.70  Aligned_cols=157  Identities=22%  Similarity=0.285  Sum_probs=127.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+ ..+.++++..+  ..+.+++   +.+.|||++|+++|+.++..+++++|++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT---EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3458999999999999999999999888 56677777544  4555544   6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAK  610 (663)
                      |+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+...   ...+++.+.+..     .+ +.||+|||+
T Consensus        93 i~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~  165 (181)
T 2h17_A           93 IVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQ-WHIQACCAL  165 (181)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSC-EEEEECBTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCh---hhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCc-eEEEEccCC
Confidence            99999999999999999988876421   1356999999999999763   344555554422     22 379999999


Q ss_pred             CCcCHHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQK  625 (663)
Q Consensus       611 tGeNVeELFe~IIr~  625 (663)
                      +|.||+++|++|++.
T Consensus       166 ~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          166 TGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTBTHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHhh
Confidence            999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.93  E-value=7.5e-26  Score=213.84  Aligned_cols=163  Identities=20%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEe--cCCceeEEEEEEeCCCccchhhhH---HHH
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS--WDHETIIRLQLWDIAGQERFGNMT---RVY  528 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~--vdge~~vkLqIwDTpGQErfrsl~---~~~  528 (663)
                      ..+..+||+|+|+.|||||||++++.+. +...  .+++.++....+.  +.+...+.++|||++|+++|..+.   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3455699999999999999999977663 4333  4555555444443  333235789999999999998776   899


Q ss_pred             HhcCcEEEEEEeCCCc--ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC------CCCCCHHHHHHHHH---
Q psy4094         529 YKEAVGAFIVFDVTRA--ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE------GIANNPAKIDEFIK---  597 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~--~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de------r~~Vs~eei~qlak---  597 (663)
                      |+++|++|+|||++++  .++..+..|+..+...     ..++|+||||||+|+...      .+.+..+++..++.   
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            9999999999999998  6677777777776532     347999999999998542      11345556777777   


Q ss_pred             -HcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         598 -EHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       598 -~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                       .++ +.|++|||++ .||+++|..|++.+
T Consensus       168 ~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLH-LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence             556 4899999999 99999999999876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=1.5e-25  Score=206.35  Aligned_cols=162  Identities=24%  Similarity=0.340  Sum_probs=127.7

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|+.|||||||+++|+++.+ ..+.++++..  ...+.+++   +.+.+||++|+++|+.++..+++++|++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   89 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAV   89 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT---EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3458999999999999999999998777 5667777733  44555543   6899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKD  611 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKt  611 (663)
                      |+|||++++.+|+.+..|+..+....   ...++|+|||+||+|+...   ...+++........    ..+|++|||++
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  163 (183)
T 1moz_A           90 IFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIK  163 (183)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            99999999999999999988876431   2457999999999999763   34455554443221    13799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |.||+++|++|++.+.++
T Consensus       164 ~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          164 GEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.93  E-value=4.3e-25  Score=208.89  Aligned_cols=159  Identities=20%  Similarity=0.287  Sum_probs=122.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|+++.+. .+.+|++  +....+.+.+   +.+.|||++|+++|+.++..+++++|++|
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN---ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT---EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4589999999999999999999988775 4566666  3344555543   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKD  611 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKt  611 (663)
                      +|||++++.+|+.+..|+..+....   ...++|+|||+||+|+....   ..+++......     .+ ++|++|||++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~-~~~~~~SA~~  174 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQED---ELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRT-WYVQATCATQ  174 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCC-EEEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhccc---ccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCc-eEEEECcCCC
Confidence            9999999999999999998876421   23469999999999997642   33333322211     12 3699999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q psy4094         612 NINIDDAAKTLVQKILE  628 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile  628 (663)
                      |.||+++|++|++.+.+
T Consensus       175 g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          175 GTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             TBTHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            99999999999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.93  E-value=4.7e-25  Score=222.16  Aligned_cols=165  Identities=22%  Similarity=0.339  Sum_probs=145.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..++|+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK-PVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTE-EEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCE-EEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            348999999999999999999999999888888887555 556666665 688999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+. .|+..+....     .++|+|||+||+|+...           ...+..+++..++..+++.+|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  306 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  306 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC-----CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence            999999999999997 7988888653     26999999999998653           136788999999999997689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      |+|||++|.||+++|++|++.++.
T Consensus       307 ~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          307 LECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999999998864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.93  E-value=1.3e-24  Score=205.81  Aligned_cols=165  Identities=32%  Similarity=0.646  Sum_probs=148.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..++|+|||++|||||||+++|++..+...+.++++.++....+.+++. .+.+++||++|++++..++..+++.+++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~-~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-TIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE-EEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            456799999999999999999999999999899999999999999999886 6788999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||+++..+|+.+..|+..+....    ..+.|+++|+||+|+...+ .+..++++.++...++ .|++|||+++.|
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~~~-~~ld~Sald~~~  178 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNGL-SFIETSALDSTN  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            999999999999999999998876532    2468999999999997655 5677889999999885 799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         615 IDDAAKTLVQKI  626 (663)
Q Consensus       615 VeELFe~IIr~I  626 (663)
                      ++++|++|.+.+
T Consensus       179 v~~l~~~l~~~i  190 (191)
T 1oix_A          179 VEAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.87  E-value=2.5e-27  Score=224.40  Aligned_cols=164  Identities=23%  Similarity=0.360  Sum_probs=139.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            458999999999999999999999988888888887554 445556554 678999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+.+. .|+..+....     .++|+|||+||+|+...+           ..+..+++..++..+++.+|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
Confidence            999999999999997 8888877532     368999999999997543           14556778888888886589


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         605 FETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ++|||++|.||+++|++|++.++
T Consensus       182 ~~vSA~~g~gi~~l~~~l~~~il  204 (204)
T 3th5_A          182 LECSALTQRGLKTVFDEAIRAVL  204 (204)
Confidence            99999999999999999988763

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.92  E-value=8.8e-25  Score=203.65  Aligned_cols=160  Identities=23%  Similarity=0.309  Sum_probs=128.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.+. .+.+|++  +....+.+++   +.++||||+|+++++.++..+++++|++|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVG--VNLETLQYKN---ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTT--CCEEEEEETT---EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCc--eEEEEEEECC---EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            4589999999999999999999887765 3566666  4444555543   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAKD  611 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAKt  611 (663)
                      +|||++++.+|+.+..|+..+...   ....++|+|||+||+|+....   ..+++.....     ..+ ++|++|||++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  167 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDE---DELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRT-WTIVKSSSKT  167 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTC---STTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhh---hhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCc-eEEEEccCCC
Confidence            999999999999999998877642   233579999999999997643   3333333221     123 3799999999


Q ss_pred             CcCHHHHHHHHHHHHHhh
Q psy4094         612 NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~  629 (663)
                      |.||+++|++|++.+..+
T Consensus       168 ~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999999988664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.91  E-value=2.9e-24  Score=204.38  Aligned_cols=164  Identities=19%  Similarity=0.182  Sum_probs=116.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-hHHHHHhcCcEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-MTRVYYKEAVGA  535 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-l~~~~~r~ADga  535 (663)
                      ..+||+|+|+.|||||||+++|+++.+...+.. ++.++..  +.+++...+.++||||+|+++|+. ++..|++++|++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            458999999999999999999999988877754 4445544  555543247899999999999998 899999999999


Q ss_pred             EEEEeCCCcc-cHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHH---------------
Q psy4094         536 FIVFDVTRAA-TFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAKIDEFIK---------------  597 (663)
Q Consensus       536 ILVyDVTd~~-SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~eei~qlak---------------  597 (663)
                      |+|||+++.. ++..+..| ...+....  ....++|+|||+||+|+...+. ....+.+...+.               
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSM--ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHH--TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhh--hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            9999999853 45555544 44443221  1234689999999999976541 000111111111               


Q ss_pred             -----------------HcC--CCeEEEEeCCCC------cCHHHHHHHHHHH
Q psy4094         598 -----------------EHN--FSGWFETSAKDN------INIDDAAKTLVQK  625 (663)
Q Consensus       598 -----------------~~g--~i~ffEtSAKtG------eNVeELFe~IIr~  625 (663)
                                       ...  .+.|++|||++|      .||+++|++|++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             010  357999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=2e-24  Score=197.47  Aligned_cols=160  Identities=16%  Similarity=0.218  Sum_probs=126.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..++|+|+|+.|||||||+++|+++.+...+.++++.++....+.+++.   .+.||||+|+++|..++..++..+|++|
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK---KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE---EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc---eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4589999999999999999999999998888888888888888887764   6789999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC--------CeEEEEe
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--------SGWFETS  608 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~--------i~ffEtS  608 (663)
                      +|||++++....... ++..+.       ..++|+|||+||+|+...    ..+++...+...+.        +.|++||
T Consensus        84 ~v~d~~~~~~~~~~~-~l~~~~-------~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE-AINHAK-------AANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             EEEETTCCCCHHHHH-HHHHHG-------GGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             EEEECCCCCcHHHHH-HHHHHH-------hCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            999999854433322 222222       235899999999999763    23344443333321        4799999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      |++|.||+++|++|++.+...+.
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHhhhhhcc
Confidence            99999999999999998766543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.91  E-value=3.2e-24  Score=197.45  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=120.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh------hhHHHHHh-
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG------NMTRVYYK-  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr------sl~~~~~r-  530 (663)
                      .++|+|+|++|||||||+++|++..+...+.++++.++....+.+++   ..+++|||+|+++|.      .+...|++ 
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT---EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC---cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            47999999999999999999999877666667777777777777665   479999999998875      45567775 


Q ss_pred             -cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         531 -EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       531 -~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                       ++|++|+|||+++.   +....|+..+..       .++|+|||+||+|+...+ .+.. ++.+++..+++ +|++|||
T Consensus        80 ~~~~~~i~v~D~~~~---~~~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~~-~~~~-~~~~~~~~~~~-~~~~~SA  146 (165)
T 2wji_A           80 EKPDLVVNIVDATAL---ERNLYLTLQLME-------MGANLLLALNKMDLAKSL-GIEI-DVDKLEKILGV-KVVPLSA  146 (165)
T ss_dssp             HCCSEEEEEEETTCH---HHHHHHHHHHHH-------TTCCEEEEEECHHHHHHT-TCCC-CHHHHHHHHTS-CEEECBG
T ss_pred             CCCCEEEEEecCCch---hHhHHHHHHHHh-------cCCCEEEEEEchHhcccc-Chhh-HHHHHHHHhCC-CEEEEEc
Confidence             89999999999874   455668777763       258999999999986543 2322 46778888885 8999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q psy4094         610 KDNINIDDAAKTLVQKI  626 (663)
Q Consensus       610 KtGeNVeELFe~IIr~I  626 (663)
                      ++|.||+++|++|++.+
T Consensus       147 ~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          147 AKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGTBSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.91  E-value=3.8e-25  Score=220.93  Aligned_cols=166  Identities=27%  Similarity=0.368  Sum_probs=132.5

Q ss_pred             CcceeEEEEEeCC---------CCCHHHHHHHHHh---CCCCCccccce-eeeceeEEEec--------------CCcee
Q psy4094         455 REFLYKILVIGEL---------GAGKTSIIKRYVH---QFFSPHYRATI-GVDFALKVLSW--------------DHETI  507 (663)
Q Consensus       455 ~d~~~KIVVLGd~---------GVGKTSLInrLlg---~~fsee~~~Ti-giDf~~ktV~v--------------dge~~  507 (663)
                      ....+||+|||++         |||||||+++|++   +.+...+.+++ +.+|..+.+.+              ++. .
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~   94 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV-E   94 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc-E
Confidence            3456999999999         9999999999999   66777788886 77877666553              333 6


Q ss_pred             EEEEEEe-----------------------CCCccchhhhHHHHHh---------------------cCcEEEEEEeCCC
Q psy4094         508 IRLQLWD-----------------------IAGQERFGNMTRVYYK---------------------EAVGAFIVFDVTR  543 (663)
Q Consensus       508 vkLqIwD-----------------------TpGQErfrsl~~~~~r---------------------~ADgaILVyDVTd  543 (663)
                      +.++|||                       ++|+++|..++..+|+                     +||++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       7888888888888888                     8999999999999


Q ss_pred             c--ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Q psy4094         544 A--ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       544 ~--~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~  621 (663)
                      +  .+|+.+..|+..+..+..   ..++|+|||+||+|+...+ .  .+++.+++.....+.|++|||++|.||+++|++
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~~-~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLA---KTKKPIVVVLTKCDEGVER-Y--IRDAHTFALSKKNLQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHH---HTTCCEEEEEECGGGBCHH-H--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhc---cCCCCEEEEEEcccccccH-H--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence            8  999999999998876421   2458999999999996644 2  267778887643358999999999999999999


Q ss_pred             HHHHHH
Q psy4094         622 LVQKIL  627 (663)
Q Consensus       622 IIr~Il  627 (663)
                      |++.+.
T Consensus       249 l~~~l~  254 (255)
T 3c5h_A          249 LVQLID  254 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.90  E-value=6.8e-24  Score=195.95  Aligned_cols=159  Identities=19%  Similarity=0.273  Sum_probs=127.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC-----------ccchhhhHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG-----------QERFGNMTRV  527 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG-----------QErfrsl~~~  527 (663)
                      +||+|+|+.|||||||+++|++..+...+.++++.+.  ..+.+.     .+.+|||+|           ++.|..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC-----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            7999999999999999999999988877777665443  333333     488999999           7888899999


Q ss_pred             HHhc-CcEEEEEEeCCCcccHHHH-HHHHHH--------HHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094         528 YYKE-AVGAFIVFDVTRAATFDAV-LKWKQD--------LDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK  597 (663)
Q Consensus       528 ~~r~-ADgaILVyDVTd~~SFe~L-~~wiee--------L~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak  597 (663)
                      |++. ++++++||++.|..+|..+ ..|...        +...+   ...++|+|||+||+|+...+    .+++.+++.
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~  147 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTIVAVNKLDKIKNV----QEVINFLAE  147 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEEEEEECGGGCSCH----HHHHHHHHH
T ss_pred             HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH---HhcCCceEEEeehHhccCcH----HHHHHHHHH
Confidence            9998 9999999999999999887 677642        22221   12469999999999997643    567888888


Q ss_pred             HcCCC------eEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         598 EHNFS------GWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       598 ~~g~i------~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      .+++.      .|++|||++|.||+++|++|++.+...+.
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            88862      47999999999999999999999877654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.90  E-value=6.1e-23  Score=199.07  Aligned_cols=166  Identities=11%  Similarity=0.096  Sum_probs=120.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc------cc----hhhhH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ------ER----FGNMT  525 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ------Er----frsl~  525 (663)
                      ...++|+|+|+.|||||||+++|+++.+.....+..+.++....+.+.+   +.+.||||+|+      ++    +.. +
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~-~  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL---NKYQIIDTPGLLDRAFENRNTIEMTT-I  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT---EEEEEEECTTTTTSCGGGCCHHHHHH-H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC---CeEEEEECCCCcCcccchhhhHHHHH-H
Confidence            4458999999999999999999999877543333333344444444443   57999999999      44    333 3


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHHcC
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPA---KIDEFIKEHN  600 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~e---ei~qlak~~g  600 (663)
                      ..++..+|++|+|||++++.+|.  ....|+..+...     ..++|+|||+||+|+...+ .+..+   .+..++...+
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~  176 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKCNMD-SLSIDNKLLIKQILDNVK  176 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCC
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccCCch-hhHHHHHHHHHHHHHhcC
Confidence            44678899999999999998875  234566666531     2469999999999997755 44443   4566776665


Q ss_pred             -CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         601 -FSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       601 -~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                       .+.||+|||++|.||+++|++|++.+...+.
T Consensus       177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          177 NPIKFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             SCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence             2479999999999999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=2e-23  Score=193.47  Aligned_cols=158  Identities=17%  Similarity=0.180  Sum_probs=129.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh------hhHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG------NMTRVYYK  530 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr------sl~~~~~r  530 (663)
                      ..++|+|+|++|||||||+++|++..+...+.++++.++....+.+++   +.+.||||+|+++|.      .++..|++
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC---cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            458999999999999999999999877666777777777777777765   579999999999875      45777775


Q ss_pred             --cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         531 --EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       531 --~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                        .+|++++|+|+++   ++....|+..+..       .++|+|||+||+|+...+ .+. ..+.+++..+++ .|++||
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~-~~~-~~~~~~~~~~~~-~~~~~S  149 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSL-GIE-IDVDKLEKILGV-KVVPLS  149 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTS-CEEECB
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccc-cch-HHHHHHHHHhCC-CeEEEE
Confidence              4999999999875   6777788887763       468999999999986543 222 456778888885 899999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~  630 (663)
                      |++|+||+++|++|++.+....
T Consensus       150 a~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTTC-
T ss_pred             ecCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999886654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.89  E-value=6.2e-23  Score=213.35  Aligned_cols=161  Identities=21%  Similarity=0.285  Sum_probs=122.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|+++.+... .+|++..+.  .+...   .+.++||||+|+++|..++..+++.+|++|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~---~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET---TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC---cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            458999999999999999999998887544 356665543  34433   368999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDN  612 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtG  612 (663)
                      ||||++++.+|..+..|+..+...   ....++|+|||+||+|+....   ..+++........    .+.||+|||++|
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             EEEECCchHHHHHHHHHHHHHHhh---hccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            999999999999999888777642   223579999999999997644   3333333332211    146999999999


Q ss_pred             cCHHHHHHHHHHHHHhh
Q psy4094         613 INIDDAAKTLVQKILEN  629 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~  629 (663)
                      .||+++|++|++.+..+
T Consensus       312 ~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          312 DGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTHHHHHHHHHHHHTC-
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            99999999999988654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.89  E-value=7.1e-23  Score=190.80  Aligned_cols=158  Identities=20%  Similarity=0.247  Sum_probs=111.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMTR  526 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~~  526 (663)
                      ..++|+|+|+.|||||||+++|++..+...+..+.+..+....+.+++    .+.||||+|          ++.|..++.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND----ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT----TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC----cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            458999999999999999999999887666666666555555555544    389999999          888999999


Q ss_pred             HHHhcC---cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC--HHHHHHHHHHcCC
Q psy4094         527 VYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN--PAKIDEFIKEHNF  601 (663)
Q Consensus       527 ~~~r~A---DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs--~eei~qlak~~g~  601 (663)
                      .+++.+   |++|+|||++++.++.... ++..+..       .++|+|||+||+|+...+ .+.  .+++.+.+.....
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKG-KWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGG-GHHHHHHHHHHHHTCCTT
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChH-HHHHHHHHHHHHHcccCC
Confidence            999888   9999999999988887753 2222321       458999999999997644 111  1223332222233


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ..|++|||++|.||+++|++|++.+.
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            58999999999999999999998763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.89  E-value=5.4e-23  Score=184.69  Aligned_cols=151  Identities=17%  Similarity=0.220  Sum_probs=111.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc-------hhhhHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-------FGNMTRVYYK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-------frsl~~~~~r  530 (663)
                      +||+|+|+.|||||||+++|++..+. ....++.+.++....+.+++.   .+.|||++|+..       +...+..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG---RFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE---EEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc---eEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            69999999999999999999988754 344455666777777777663   789999999987       4566777899


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK  610 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK  610 (663)
                      .+|++|+|||++++.++..  .|+..+...      .++|+|||+||+|+....     +++.+++ .+++..|++|||+
T Consensus        79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~~~~~~~~~Sa~  144 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKHE-----LYLGPLY-GLGFGDPIPTSSE  144 (161)
T ss_dssp             TCSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGGG-----GGCGGGG-GGSSCSCEECBTT
T ss_pred             hCCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccch-----HhHHHHH-hCCCCCeEEEecc
Confidence            9999999999998755433  232222211      358999999999997642     3444555 5675579999999


Q ss_pred             CCcCHHHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQKI  626 (663)
Q Consensus       611 tGeNVeELFe~IIr~I  626 (663)
                      +|.||+++|++|++.+
T Consensus       145 ~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          145 HARGLEELLEAIWERL  160 (161)
T ss_dssp             TTBSHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHHHHhC
Confidence            9999999999998864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.89  E-value=3.1e-23  Score=213.23  Aligned_cols=165  Identities=22%  Similarity=0.273  Sum_probs=133.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC---CccccceeeeceeEEEecCCceeEEEEEEeCCCccch-----hhhHHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS---PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-----GNMTRVYY  529 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-----rsl~~~~~  529 (663)
                      .+||+|+|++|||||||+++|+++...   ..+.+|++.++..  +.+++.  +.++|||++|+++|     ..++..++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLGN--MTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETTT--EEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCCc--eEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            489999999999999999999987332   2456677766654  444443  78999999999998     78999999


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC--CCCC----CCHHHHHHHHHHcCC--
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK--EGIA----NNPAKIDEFIKEHNF--  601 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d--er~~----Vs~eei~qlak~~g~--  601 (663)
                      +++|++|+|||++++.+|+.+..|+..+.....  ...++|+||||||+|+..  .+ .    +..+++.+++..+|+  
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~--~~~~~piilv~NK~Dl~~~~~r-~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK--YSPDAKIFVLLHKMDLVQLDKR-EELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHH-HHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEecccccchhhh-hHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999887665554321  135699999999999976  33 2    455788899999984  


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      ++|++|||++ .|+.++|..+++.++...
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             eEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence            6899999999 899999999998765543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.89  E-value=5.4e-24  Score=224.27  Aligned_cols=161  Identities=19%  Similarity=0.207  Sum_probs=124.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC---ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh---hHHHHHhcCc
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP---HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN---MTRVYYKEAV  533 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse---e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs---l~~~~~r~AD  533 (663)
                      ||+|||+.|||||||++++.++.+..   .+.+|+|+++..  +  +.  .++|+||||+||++|+.   ++..||++|+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~~--~v~LqIWDTAGQErf~~~~l~~~~yyr~a~   74 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--ST--LIDLAVMELPGQLNYFEPSYDSERLFKSVG   74 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--CS--SSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--cc--EEEEEEEECCCchhccchhhhhhhhccCCC
Confidence            69999999999999999888664433   356888887753  2  22  37899999999999974   4799999999


Q ss_pred             EEEEEEeCCCcccHHHHHHH---HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHHHH----cC
Q psy4094         534 GAFIVFDVTRAATFDAVLKW---KQDLDAKVTLPDGNPIPCVLLANKCDQPKEG------IANNPAKIDEFIKE----HN  600 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~w---ieeL~~~~~~~~~~~IPIILVGNKsDL~der------~~Vs~eei~qlak~----~g  600 (663)
                      ++|+|||++++ .++.+..|   +..+..+     ..++|++|||||+||..+.      +.+..+++.++++.    ++
T Consensus        75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-----~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~  148 (331)
T 3r7w_B           75 ALVYVIDSQDE-YINAITNLAMIIEYAYKV-----NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ  148 (331)
T ss_dssp             EEEEECCCSSC-TTHHHHHHHHHHHHHHHH-----CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred             EEEEEEECCch-HHHHHHHHHHHHHHHhhc-----CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence            99999999998 43433333   4444432     3569999999999997642      24666677777775    45


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~~~  634 (663)
                       +.||+|||++ +||.++|..|++.++.+....+
T Consensus       149 -i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le  180 (331)
T 3r7w_B          149 -VSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLE  180 (331)
T ss_dssp             -EEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHH
T ss_pred             -ceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHH
Confidence             5899999997 6999999999999887766444

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.89  E-value=1.5e-22  Score=187.14  Aligned_cols=158  Identities=15%  Similarity=0.233  Sum_probs=119.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMT  525 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~  525 (663)
                      ...+||+|+|+.|||||||+++|++..+ ..+.++.+..........+.    .+.+|||+|          ++.|..++
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~----~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS----KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT----TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC----cEEEEECCCCccccCChhhHHHHHHHH
Confidence            3458999999999999999999998873 33444555444444444443    378999999          77888999


Q ss_pred             HHHHhcC---cEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc
Q psy4094         526 RVYYKEA---VGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH  599 (663)
Q Consensus       526 ~~~~r~A---DgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~  599 (663)
                      ..+++.+   |++++|+|+++..+..  .+..|+..+          ++|+|||+||+|+.... ..+..+++.+++...
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            9999887   9999999998865543  333444332          48999999999986532 234445667777776


Q ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         600 NFSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       600 g~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +.++|++|||++|.||+++|++|++.+.+
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            66689999999999999999999988753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.87  E-value=2.9e-22  Score=186.71  Aligned_cols=153  Identities=18%  Similarity=0.190  Sum_probs=116.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--------HHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--------TRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--------~~~~  528 (663)
                      .+||+|+|++|||||||+++|++..+. ....++.+.++....+.+++.   .+.+|||+|++++...        ...+
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM---PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE---EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe---EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            379999999999999999999987653 234456667777788888763   5899999998754211        1246


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++++|++|+|||++++.+|+. ..|+..+....    ..++|+|||+||+|+..+...        ++...+ ..|++||
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~-~~~~~~S  146 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL----PAKLPITVVRNKADITGETLG--------MSEVNG-HALIRLS  146 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS----CTTCCEEEEEECHHHHCCCCE--------EEEETT-EEEEECC
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc----ccCCCEEEEEECccCCcchhh--------hhhccC-CceEEEe
Confidence            899999999999999998874 57877776542    246999999999998543211        112233 5799999


Q ss_pred             CCCCcCHHHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Il  627 (663)
                      |++|+||+++|++|++.+.
T Consensus       147 A~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          147 ARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTTCTTHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHhh
Confidence            9999999999999988763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.86  E-value=9e-22  Score=216.25  Aligned_cols=166  Identities=22%  Similarity=0.328  Sum_probs=126.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEE------EecCC-ceeEEEEEEeCCCccchhhhHHHH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV------LSWDH-ETIIRLQLWDIAGQERFGNMTRVY  528 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~kt------V~vdg-e~~vkLqIwDTpGQErfrsl~~~~  528 (663)
                      ...+||+|+|.+|||||||+++|.+..+...+.+|+|.++..+.      +.+++ ...+.+.|||++|++.|..++..+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            35699999999999999999999999998889999998887652      33332 114789999999999999999999


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++.+|++|+|||+++.   +.+..|+..+..+.     .++|+|||+||+|+...+ .+..+++..++...++ +|++||
T Consensus       119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-----~~~pvilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~vS  188 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-----GKSPVIVVMNKIDENPSY-NIEQKKINERFPAIEN-RFHRIS  188 (535)
T ss_dssp             HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-----SSCCEEEEECCTTTCTTC-CCCHHHHHHHCGGGTT-CEEECC
T ss_pred             ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-----CCCCEEEEEECCCccccc-ccCHHHHHHHHHhcCC-ceEEEe
Confidence            9999999999999864   56678999888752     358999999999998766 6778888888888885 799999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         609 AKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      |++|.||+++|.+|++.+.....
T Consensus       189 A~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             C-----CTTHHHHHHHHHTCTTS
T ss_pred             cCcccCHHHHHHHHHHHHhcccc
Confidence            99999999999999998876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.84  E-value=9.4e-22  Score=187.52  Aligned_cols=147  Identities=18%  Similarity=0.225  Sum_probs=110.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCC---ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc-
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSP---HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE-  531 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fse---e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~-  531 (663)
                      ...++|+|+|+.|||||||+++|++..+..   .+.++++.++        .  .+.+.|||++|+++++.++..|++. 
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------D--GSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------G--GSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------e--CceEEEEECCCcHHHHHHHHHHHHhc
Confidence            345899999999999999999999987754   3566666554        1  3568999999999999999999988 


Q ss_pred             ---CcEEEEEEeCC-CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHHHcCC
Q psy4094         532 ---AVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN------PAKIDEFIKEHNF  601 (663)
Q Consensus       532 ---ADgaILVyDVT-d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs------~eei~qlak~~g~  601 (663)
                         +|++|+|||++ ++.+|..+..|+..+..........++|+|||+||+|+...+ .+.      .+++..++...++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhc
Confidence               99999999999 889999999998887754321123569999999999998765 222      4556677777764


Q ss_pred             CeEEEEeCCCCcC
Q psy4094         602 SGWFETSAKDNIN  614 (663)
Q Consensus       602 i~ffEtSAKtGeN  614 (663)
                       .|+++||++|.+
T Consensus       159 -~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 -SLNEVERKINEE  170 (218)
T ss_dssp             -HHHC--------
T ss_pred             -cccccccccccc
Confidence             799999998876

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.84  E-value=6.3e-21  Score=192.02  Aligned_cols=155  Identities=17%  Similarity=0.166  Sum_probs=123.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh------hHHHHH-
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN------MTRVYY-  529 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs------l~~~~~-  529 (663)
                      ..++|+|+|++|||||||+++|++..+.....++++++.....+...+   +.+.|||+||+..+..      +...|+ 
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG---YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC---eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            458999999999999999999999877666667777776666666544   5899999999987764      335666 


Q ss_pred             -hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         530 -KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       530 -r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                       ..+|++|+|||+++..+.   ..|+..+..       .++|+|||+||+|+...+ .+. .++..++..+++ ++++||
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~-------~~~pvilv~NK~Dl~~~~-~i~-~~~~~l~~~lg~-~vi~~S  147 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE-------MEKKVILAMTAIDEAKKT-GMK-IDRYELQKHLGI-PVVFTS  147 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT-------TTCCEEEEEECHHHHHHT-TCC-BCHHHHHHHHCS-CEEECC
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh-------cCCCEEEEEECcCCCCcc-chH-HHHHHHHHHcCC-CEEEEE
Confidence             489999999999986543   346666653       369999999999986544 232 246788888885 899999


Q ss_pred             CCCCcCHHHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Il  627 (663)
                      |++|.||+++|++|++.+.
T Consensus       148 A~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          148 SVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCcCHHHHHHHHHHHhh
Confidence            9999999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.84  E-value=5.6e-21  Score=182.38  Aligned_cols=163  Identities=16%  Similarity=0.102  Sum_probs=112.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC--CccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS--PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNM  524 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs--ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl  524 (663)
                      ..++|+|+|..|||||||+++|++..+.  ....+..+.+.....+...+  ...+.||||+|          ++.|..+
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA--EPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT--SCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC--CCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4589999999999999999999988632  22222233333333333122  25689999999          4666778


Q ss_pred             HHHHHhc---CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHc-
Q psy4094         525 TRVYYKE---AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAKIDEFIKEH-  599 (663)
Q Consensus       525 ~~~~~r~---ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~eei~qlak~~-  599 (663)
                      +..|++.   +|++|+|+|+++..+... ..|+..+..       .++|+|||+||+|+..... ....+.+.+.+..+ 
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            8888887   788999999998655332 345555542       4589999999999865330 00122333334432 


Q ss_pred             -----CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         600 -----NFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       600 -----g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                           ...++|+|||++|.||+++|++|.+.+...
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence                 446899999999999999999999988654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.84  E-value=5.1e-20  Score=189.63  Aligned_cols=163  Identities=19%  Similarity=0.200  Sum_probs=128.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh----------hhH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG----------NMT  525 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr----------sl~  525 (663)
                      ..-.|+|+|.+|||||||+++|++..+.. ...+..+.+.....+..+..  +.+.||||||+.++.          ..+
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHHH
Confidence            34689999999999999999999988763 23333333333334444422  679999999985543          677


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeE
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGW  604 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~f  604 (663)
                      ..+++.+|++|+|||++++.++.....|+..+..       .++|+|||+||+|+...+ ....+.+..+...++ ...+
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~~~-~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIGPA-KNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSSSG-GGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCCCH-HHHHHHHHHHHHhccCCCeE
Confidence            7889999999999999999999998888887774       358999999999997433 455677777888774 5689


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      |+|||++|.||+++|++|++.+...
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccC
Confidence            9999999999999999999988654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.83  E-value=1.3e-20  Score=191.89  Aligned_cols=152  Identities=19%  Similarity=0.201  Sum_probs=117.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh------hhHHHHHh-
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG------NMTRVYYK-  530 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr------sl~~~~~r-  530 (663)
                      .++|+|+|++|||||||+++|.+..+.....++++++.....+.. +   +.++||||||+..+.      .++..|+. 
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~---~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N---KDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C---TTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C---CeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            479999999999999999999987655444555555444433333 2   468999999999876      56677776 


Q ss_pred             -cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         531 -EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       531 -~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                       .+|++|+|||+++...   ...|..++..       .++|+|||+||+|+...+ .+. ..+..++..+++ ++++|||
T Consensus        79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~-~vi~~SA  145 (272)
T 3b1v_A           79 QRADSILNVVDATNLER---NLYLTTQLIE-------TGIPVTIALNMIDVLDGQ-GKK-INVDKLSYHLGV-PVVATSA  145 (272)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH-------TCSCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTS-CEEECBT
T ss_pred             CCCCEEEEEecCCchHh---HHHHHHHHHh-------cCCCEEEEEEChhhCCcC-CcH-HHHHHHHHHcCC-CEEEEEc
Confidence             5999999999998543   4456666653       358999999999986543 222 356778888885 8999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q psy4094         610 KDNINIDDAAKTLVQKI  626 (663)
Q Consensus       610 KtGeNVeELFe~IIr~I  626 (663)
                      ++|.||+++|++|++.+
T Consensus       146 ~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          146 LKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             TTTBSHHHHHHHHHHSC
T ss_pred             cCCCCHHHHHHHHHHHH
Confidence            99999999999998865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.83  E-value=7.2e-21  Score=192.67  Aligned_cols=155  Identities=16%  Similarity=0.127  Sum_probs=121.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh----------hhHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG----------NMTRV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr----------sl~~~  527 (663)
                      .++|+|+|.+|||||||+++|.+..+.....++++.+.....+.+.+.   .+.||||||+..+.          .++..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH---QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC---EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC---ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            489999999999999999999998876677788888888888887664   58899999998766          23344


Q ss_pred             HH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094         528 YY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       528 ~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff  605 (663)
                      |+  +++|++|+|||+++...+..   |...+...       ++|+|+|+||+|+...+ . .......++..+++ +++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~-------~~p~ivv~NK~Dl~~~~-~-~~~~~~~l~~~lg~-~~i  146 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLY---LTLQLLEL-------GIPCIVALNMLDIAEKQ-N-IRIEIDALSARLGC-PVI  146 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH-------TCCEEEEEECHHHHHHT-T-EEECHHHHHHHHTS-CEE
T ss_pred             HHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc-------CCCEEEEEECccchhhh-h-HHHHHHHHHHhcCC-CEE
Confidence            44  79999999999998554444   44444431       48999999999986543 1 12235677778885 899


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +|||++|.||+++|++|.+.+..
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999876643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.83  E-value=5.9e-21  Score=192.25  Aligned_cols=151  Identities=15%  Similarity=0.094  Sum_probs=120.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh----------hHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN----------MTRVY  528 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs----------l~~~~  528 (663)
                      .+|+|+|.+|||||||+++|.+..+.....++++.+.....+.+++.   .+.||||||+..+..          +...|
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~---~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH---LIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE---EEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe---EEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            48999999999999999999998777777788888888888887763   799999999987753          56677


Q ss_pred             H--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         529 Y--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       529 ~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      +  +++|++|+|||+++...+..+..|   +..       .++|+|||+||+|+...+ . .......++..+++ ++++
T Consensus        79 ~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~-------~~~pvilv~NK~Dl~~~~-~-~~~~~~~l~~~lg~-~vi~  145 (256)
T 3iby_A           79 VIDLEYDCIINVIDACHLERHLYLTSQ---LFE-------LGKPVVVALNMMDIAEHR-G-ISIDTEKLESLLGC-SVIP  145 (256)
T ss_dssp             HHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT-------SCSCEEEEEECHHHHHHT-T-CEECHHHHHHHHCS-CEEE
T ss_pred             HhhCCCCEEEEEeeCCCchhHHHHHHH---HHH-------cCCCEEEEEEChhcCCcC-C-cHHHHHHHHHHcCC-CEEE
Confidence            7  899999999999986555443333   331       358999999999986543 1 12234567777885 8999


Q ss_pred             EeCCCCcCHHHHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~  625 (663)
                      |||++|.||+++|++|++.
T Consensus       146 ~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          146 IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CBGGGTBSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=3.2e-20  Score=199.40  Aligned_cols=162  Identities=13%  Similarity=0.149  Sum_probs=120.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhhH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNMT  525 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl~  525 (663)
                      ..+||+|+|++|||||||+++|++..+. ....++++.++....+.+++.   .++||||+|+          +.|..++
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ---EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE---EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe---EEEEEECCCcCcCccccchHHHHHHHH
Confidence            3589999999999999999999998764 445566777887778887774   5899999998          6666655


Q ss_pred             H-HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HHHH---cC
Q psy4094         526 R-VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-FIKE---HN  600 (663)
Q Consensus       526 ~-~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-lak~---~g  600 (663)
                      . .+++.+|++|+|||++++.+++.+ .|+..+..       .++|+|||+||+|+...+ .+..+++.+ +...   .+
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~l~~~~  321 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLD  321 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCCC-TTHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCcc-hHHHHHHHHHHHHhcccCC
Confidence            4 488999999999999999999886 57766653       468999999999997654 333333322 2222   23


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      .+++++|||++|.||+++|+.+.+.+..+.
T Consensus       322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          322 YAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            468999999999999999999998876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.82  E-value=4.6e-20  Score=185.18  Aligned_cols=157  Identities=17%  Similarity=0.155  Sum_probs=125.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh------hHHHHH--
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN------MTRVYY--  529 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs------l~~~~~--  529 (663)
                      .++|+|+|++|||||||+++|.+..+.....++++.++....+.+.+.   .+.|||+||+..+..      ++..|+  
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~---~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK---EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE---EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc---eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            489999999999999999999998887677888888888888887764   599999999988766      677777  


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      .++|++|+|||+++.   .....|...+...      ..+|+|+|+||+|+...+ .+.. ....++..+++ ++++|||
T Consensus        80 ~~~d~vi~v~D~~~~---~~~~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~-~~~~-~~~~l~~~lg~-~~~~~Sa  147 (271)
T 3k53_A           80 GNADVIVDIVDSTCL---MRNLFLTLELFEM------EVKNIILVLNKFDLLKKK-GAKI-DIKKMRKELGV-PVIPTNA  147 (271)
T ss_dssp             TCCSEEEEEEEGGGH---HHHHHHHHHHHHT------TCCSEEEEEECHHHHHHH-TCCC-CHHHHHHHHSS-CEEECBG
T ss_pred             cCCcEEEEEecCCcc---hhhHHHHHHHHhc------CCCCEEEEEEChhcCccc-ccHH-HHHHHHHHcCC-cEEEEEe
Confidence            689999999999875   3334455555431      228999999999986433 1121 26677888885 8999999


Q ss_pred             CCCcCHHHHHHHHHHHHHhh
Q psy4094         610 KDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       610 KtGeNVeELFe~IIr~Ile~  629 (663)
                      ++|.|++++|++|.+.+...
T Consensus       148 ~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999887544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=1.6e-19  Score=194.88  Aligned_cols=163  Identities=14%  Similarity=0.187  Sum_probs=124.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCC-CCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQF-FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMT  525 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~  525 (663)
                      ..+||+|+|++|||||||+++|++.. +.....++++.++....+.+++.   .++||||+|          +++|..++
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ---EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE---EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc---eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            45899999999999999999999765 33455667777887778887764   789999999          78888776


Q ss_pred             HH-HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----C
Q psy4094         526 RV-YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----N  600 (663)
Q Consensus       526 ~~-~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g  600 (663)
                      .. +++.||++|+|||+++...... ..|+..+..       .++|+|||+||+|+...+ .+..+++.+.+...    +
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~  341 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLD  341 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSCCC-SSHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCCCc-hHHHHHHHHHHHHhcccCC
Confidence            64 7899999999999998655433 355555543       458999999999998765 45566666666654    3


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      .++|++|||++|.||+++|++|++.+..+..
T Consensus       342 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          342 YAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             TSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            4689999999999999999999998766543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.79  E-value=1e-19  Score=191.21  Aligned_cols=119  Identities=17%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT----------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVT----------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      +.++|||++||++|+.+|..||++++++|+|||++          +..+|+....|+..+..   .....++|+||||||
T Consensus       167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~---~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT---YPWFQNSSVILFLNK  243 (327)
T ss_dssp             EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT---SGGGTTCEEEEEEEC
T ss_pred             eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh---hhccCCceEEEEEEC
Confidence            78999999999999999999999999999999776          55666666666665543   333467999999999


Q ss_pred             CCCCCCCC---------------CCCHHHHHHHHH----------HcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         578 CDQPKEGI---------------ANNPAKIDEFIK----------EHNFSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       578 sDL~der~---------------~Vs~eei~qlak----------~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      +||..++.               .+..+++.+++.          ..+ +.+++|||+++.||+++|..+.+.|+...
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            99854331               357788888753          233 46889999999999999999999998753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.79  E-value=5.3e-19  Score=190.09  Aligned_cols=152  Identities=22%  Similarity=0.338  Sum_probs=109.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc---------hhhhHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER---------FGNMTRVYY  529 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr---------frsl~~~~~  529 (663)
                      +|+|||.+|||||||+++|++.... ....++++.++....+.+++.   .++||||+|++.         ++.++..++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK---TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE---EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe---EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            7999999999999999999987654 355677777888888888774   689999999764         456678899


Q ss_pred             hcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHHcCCCeEEE
Q psy4094         530 KEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI-DEFIKEHNFSGWFE  606 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei-~qlak~~g~i~ffE  606 (663)
                      ++||++|+|||++++.++..  +..|+..          .++|+|||+||+|+...   . ..++ .+++ .+++..+++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~----------~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~  144 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK----------STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIP  144 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH----------HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEE
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEE
Confidence            99999999999998766543  2233321          24899999999998532   0 1223 3443 456546899


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         607 TSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +||++|.|++++|++|++.+.+.
T Consensus       145 iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          145 VSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EeccCCCCHHHHHHHHHHhcccc
Confidence            99999999999999999988753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.78  E-value=7e-19  Score=181.43  Aligned_cols=158  Identities=15%  Similarity=0.150  Sum_probs=113.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRV  527 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~  527 (663)
                      ...+|+|+|++|||||||+++|++..+.. ...+..+.+.....+..+   .+.++||||||+.+        +......
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~---~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG---RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET---TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC---CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            34689999999999999999999987753 233333323222223322   36899999999876        5566777


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-cCCCeEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-HNFSGWF  605 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-~g~i~ff  605 (663)
                      +++.+|++|+|||++++.+...  .|+ ..+...     ..++|+|||+||+|+.... .    .+..++.. .++..++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-----~~~~p~ilV~NK~Dl~~~~-~----~~~~~~~~~~~~~~~~  150 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPL-----VGKVPILLVGNKLDAAKYP-E----EAMKAYHELLPEAEPR  150 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-----TTTSCEEEEEECGGGCSSH-H----HHHHHHHHTSTTSEEE
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-----cCCCCEEEEEECcccCCch-H----HHHHHHHHhcCcCcEE
Confidence            8999999999999998766553  454 455432     1368999999999986533 1    02233333 3545799


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ++||++|.|++++|++|.+.+...
T Consensus       151 ~iSA~~g~gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          151 MLSALDERQVAELKADLLALMPEG  174 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred             EEeCCCCCCHHHHHHHHHHhcccC
Confidence            999999999999999998876543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.78  E-value=1.3e-18  Score=195.59  Aligned_cols=161  Identities=17%  Similarity=0.246  Sum_probs=117.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCC--CC-------------CccccceeeeceeEEEecC--CceeEEEEEEeCCCcc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQF--FS-------------PHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQE  519 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~--fs-------------ee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQE  519 (663)
                      ...+|+|+|+.++|||||+++|+...  +.             .+..+.+++......+.+.  +...+.++|||||||+
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998621  11             1112333333333334332  2225889999999999


Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH  599 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~  599 (663)
                      +|...+..+++.+|++|+|||++++.+++....|...+.        .++|+|+|+||+|+...+   ..+...++...+
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~---~~~v~~ei~~~l  151 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD---PERVAEEIEDIV  151 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC---HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc---HHHHHHHHHHHh
Confidence            999999999999999999999999999999988887665        358999999999997644   334455666666


Q ss_pred             CC--CeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         600 NF--SGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       600 g~--i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      ++  ..++++||++|.||+++|++|++.+..
T Consensus       152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            64  248999999999999999999988754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.78  E-value=6.5e-19  Score=193.04  Aligned_cols=156  Identities=17%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHH--------H
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRV--------Y  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~--------~  528 (663)
                      .++|+|+|.+|||||||+++|++... .....++++.++....+.+++   +.+.||||+|+.++...+..        +
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g---~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK---TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT---EEEEEEC--------------------CC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            48999999999999999999998753 345566777788888888876   47999999999877655433        6


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++++|++|+|||++++.+++.+..|...+...      .++|+|+|+||+|+.... .   .....+... +..++++||
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~-~---~~~~~l~~~-~~~~~i~vS  378 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANA-D---ALIRAIADG-TGTEVIGIS  378 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTT-H---HHHHHHHHH-HTSCEEECB
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCcc-c---hhHHHHHhc-CCCceEEEE
Confidence            78999999999999999887554444434321      158999999999997654 1   122334443 235799999


Q ss_pred             CCCCcCHHHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Il  627 (663)
                      |++|.||+++|++|.+.+.
T Consensus       379 Aktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          379 ALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTTBSHHHHHHHHTHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHh
Confidence            9999999999999999886

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.78  E-value=3e-19  Score=188.96  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=98.9

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      +.|+||||+||++|+.+|..||++++++|||||+++          ..+|+.+..|+..+..+   ....++|+||||||
T Consensus       193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~---~~~~~~piiLv~NK  269 (353)
T 1cip_A          193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN---KWFTDTSIILFLNK  269 (353)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC---GGGTTSEEEEEEEC
T ss_pred             eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC---ccccCCcEEEEEEC
Confidence            789999999999999999999999999999999999          56688888887777642   22357999999999


Q ss_pred             CCCCCCC--------------CCCCHHHHHHHHHH----------cCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         578 CDQPKEG--------------IANNPAKIDEFIKE----------HNFSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       578 sDL~der--------------~~Vs~eei~qlak~----------~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      +||..++              ..+..+++..++..          ...+.|++|||+++.||+++|.++++.|+...
T Consensus       270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            9985322              13567888888873          12357999999999999999999999987643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.78  E-value=2.7e-18  Score=193.24  Aligned_cols=162  Identities=17%  Similarity=0.254  Sum_probs=120.2

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC--CCC-------------CccccceeeeceeEEEecC--CceeEEEEEEeCCCc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ--FFS-------------PHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQ  518 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~--~fs-------------ee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQ  518 (663)
                      +...+|+|+|+.++|||||+++|+..  .+.             .+..+++++......+.+.  +...+.++|||||||
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            45689999999999999999999852  111             1112333333333333332  222588999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE  598 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~  598 (663)
                      ++|...+..+++.+|++|||||++++.+++....|...+.        .++|+|+|+||+|+....   ..+...++...
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~---~~~v~~el~~~  152 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD---VDRVKKQIEEV  152 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC---HHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC---HHHHHHHHHHh
Confidence            9999999999999999999999999999999999887654        358999999999997643   23445566666


Q ss_pred             cCCC--eEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         599 HNFS--GWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       599 ~g~i--~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +++.  .++++||++|.||+++|++|++.+..
T Consensus       153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            6642  48999999999999999999988764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.78  E-value=2.8e-18  Score=179.62  Aligned_cols=161  Identities=14%  Similarity=0.200  Sum_probs=120.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh---------hhHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG---------NMTRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr---------sl~~~~  528 (663)
                      .++|+|+|.+|||||||+++|++..+.....+..+.+.....+...+   +.+.+|||+|+..+.         .....+
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY---FRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT---EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC---ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            47999999999999999999998765333233333333333443333   579999999985431         112234


Q ss_pred             HhcCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         529 YKEAVGAFIVFDVTRAA--TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~--SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      +..+|++|+|||+++..  +++....|+..+...+     .++|+|+|+||+|+....   ..+++.+++...++ ++++
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-----~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~-~~~~  314 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-----KDLPFLVVINKIDVADEE---NIKRLEKFVKEKGL-NPIK  314 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-----TTSCEEEEECCTTTCCHH---HHHHHHHHHHHTTC-CCEE
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-----CCCCEEEEEECcccCChH---HHHHHHHHHHhcCC-CeEE
Confidence            45799999999999877  7888889999888643     168999999999997643   23456667776664 7999


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         607 TSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      |||++|+||+++|++|++.+....
T Consensus       315 iSA~~g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          315 ISALKGTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999886543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.78  E-value=1.5e-19  Score=191.40  Aligned_cols=121  Identities=13%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q psy4094         507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT----------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN  576 (663)
Q Consensus       507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVT----------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGN  576 (663)
                      .+.|+||||+||++|+.+|..||++++++|||||++          +..+|+.+..|+..+..+   ....++|+|||||
T Consensus       182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~---~~~~~~piiLvgN  258 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFMLFLN  258 (354)
T ss_dssp             --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---GGGSSCEEEEEEE
T ss_pred             ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---cccCCCeEEEEEE
Confidence            589999999999999999999999999999999998          788999999998887642   1235799999999


Q ss_pred             CCCCCCCCC-CC-------------------CHHHHHHHHHHc---------------CCCeEEEEeCCCCcCHHHHHHH
Q psy4094         577 KCDQPKEGI-AN-------------------NPAKIDEFIKEH---------------NFSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       577 KsDL~der~-~V-------------------s~eei~qlak~~---------------g~i~ffEtSAKtGeNVeELFe~  621 (663)
                      |+||..++. .+                   ..+++..++...               ..+.+++|||+++.||+++|.+
T Consensus       259 K~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~  338 (354)
T 2xtz_A          259 KFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKL  338 (354)
T ss_dssp             CHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHH
Confidence            999854321 01                   146677775431               2234689999999999999999


Q ss_pred             HHHHHHhhh
Q psy4094         622 LVQKILEND  630 (663)
Q Consensus       622 IIr~Ile~~  630 (663)
                      +++.|+...
T Consensus       339 v~~~I~~~~  347 (354)
T 2xtz_A          339 VDETLRRRN  347 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.77  E-value=5.2e-19  Score=186.31  Aligned_cols=162  Identities=14%  Similarity=0.140  Sum_probs=123.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHHhc---
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYYKE---  531 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~r~---  531 (663)
                      .+|+|||.++||||||+++|.+........+..+.+.....+.+++.  ..+.||||+|+.    .+..+...|++.   
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC--ceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            47899999999999999999876543222222333333445666653  478999999964    355566667654   


Q ss_pred             CcEEEEEEeCCC---cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEE
Q psy4094         532 AVGAFIVFDVTR---AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFET  607 (663)
Q Consensus       532 ADgaILVyDVTd---~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffEt  607 (663)
                      ++++|+|||+++   +.+++.+..|+.+|..+.  ....++|+|||+||+|+....     +.+.+++..+.. ..+|+|
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~--~~l~~~p~ilV~NK~Dl~~~~-----e~~~~l~~~l~~~~~v~~i  309 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN--LRLTERPQIIVANKMDMPEAA-----ENLEAFKEKLTDDYPVFPI  309 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC--SSTTTSCBCBEEECTTSTTHH-----HHHHHHHHHCCSCCCBCCC
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhh--hhhcCCCEEEEEECccCCCCH-----HHHHHHHHHhhcCCCEEEE
Confidence            999999999999   889999999999998652  123568999999999986532     456667777653 479999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhh
Q psy4094         608 SAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ||++++||+++|.+|.+.+...
T Consensus       310 SA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          310 SAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSC
T ss_pred             ECCCCcCHHHHHHHHHHHHhhC
Confidence            9999999999999999988654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.76  E-value=2.3e-19  Score=194.12  Aligned_cols=158  Identities=22%  Similarity=0.175  Sum_probs=119.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh-------HHH
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM-------TRV  527 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl-------~~~  527 (663)
                      ...++|+|+|+.|+|||||+++|++..+. ....++++.+...+.+.+.+.  ..+.||||+|+++|..+       +..
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT--EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC--CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            45689999999999999999999988764 445566677888888888765  47999999999887654       566


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      +++++|++|+|||++..   .....|+..+...       ++|+|+|+||+|+...+   ..+.+.+++..+++ +|++|
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~---~~~~~~~l~~~~g~-~v~~v  175 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM-------EIPFVVVVNKIDVLGEK---AEELKGLYESRYEA-KVLLV  175 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-------TCCEEEECCCCTTTTCC---CTHHHHHSSCCTTC-CCCCC
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-------CCCEEEEEeCcCCCCcc---HHHHHHHHHHHcCC-CEEEE
Confidence            89999999999999332   3345677777642       58999999999998765   22566677767775 89999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhh
Q psy4094         608 SAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ||++|.|++++|++|++.+...
T Consensus       176 SAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHHHhhhhh
Confidence            9999999999999999988554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.1e-18  Score=162.70  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=90.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC---ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc--
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP---HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE--  531 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse---e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~--  531 (663)
                      ..++|+|+|+.|||||||+++|++..+..   .+.++++.++       .   .+.+.|||++|++.+...+..++..  
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D---GSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C---CTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c---CCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            45899999999999999999999987654   3344444333       1   2468999999999999888888887  


Q ss_pred             --CcEEEEEEeCC-CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         532 --AVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       532 --ADgaILVyDVT-d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                        +|++|+|||++ +..+|..+..|+..+..........++|+|||+||+|+...+
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 899999999998877654321122469999999999997754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.76  E-value=9.8e-20  Score=195.98  Aligned_cols=160  Identities=14%  Similarity=0.261  Sum_probs=113.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC--CCCCc-----------------------------cccceeeeceeEEEecCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ--FFSPH-----------------------------YRATIGVDFALKVLSWDHE  505 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~--~fsee-----------------------------~~~TigiDf~~ktV~vdge  505 (663)
                      ..++|+|+|+.++|||||+++|+..  .+...                             ..++++++.....+...+ 
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence            4689999999999999999999864  33211                             134455555555555443 


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPKEG  584 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~der  584 (663)
                        +.+.|||||||++|...+..+++.+|++|||||+++ .+|+.+..|..+.+.++......++ ++|||+||+|+....
T Consensus        84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence              579999999999999999999999999999999999 7888777666555554322112234 589999999997631


Q ss_pred             -----CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHHHH
Q psy4094         585 -----IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       585 -----~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeELFe  620 (663)
                           .....+++..++..+++    ++|+++||++|.||.+++.
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 12234667788887773    5799999999999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.76  E-value=4.2e-18  Score=183.98  Aligned_cols=158  Identities=16%  Similarity=0.182  Sum_probs=114.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vdg  504 (663)
                      ...++|+++|+.++|||||+++|+..                               .+..+..+++++++....+..++
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            45689999999999999999999542                               22334456778887777777665


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc---HHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT---FDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ  580 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S---Fe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL  580 (663)
                         ..+.|||||||++|...+..++..||++|||+|++++..   |+....+.+.+...    ...++| +|||+||+|+
T Consensus        95 ---~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~----~~~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           95 ---KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA----KTAGVKHLIVLINKMDD  167 (439)
T ss_pred             ---eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH----HHcCCCeEEEEeecCCC
Confidence               479999999999999999999999999999999998643   22111222222111    113466 9999999998


Q ss_pred             CCCC-----CCCCHHHHHHHHHHcCC-----CeEEEEeCCCCcCHHHHHH
Q psy4094         581 PKEG-----IANNPAKIDEFIKEHNF-----SGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       581 ~der-----~~Vs~eei~qlak~~g~-----i~ffEtSAKtGeNVeELFe  620 (663)
                      ....     .....+++..++..+++     ++|+++||++|.|++++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5421     22334556667666664     4799999999999999765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.76  E-value=8.3e-19  Score=188.40  Aligned_cols=153  Identities=16%  Similarity=0.216  Sum_probs=104.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc--------chhhhHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE--------RFGNMTRVYY  529 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--------rfrsl~~~~~  529 (663)
                      .+|+|||.+|||||||+++|++..+. ....++++.+.....+.+.+.   .++||||+|++        .++.++..++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY---DFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS---CCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc---eEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            58999999999999999999987654 233344455665666666553   68999999986        6778888999


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ++||++|+|||++++.++..  .|+..+..      ..++|+|||+||+|+...+..     +.+++ .+++..++++||
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~------~~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA  146 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY------RTKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISG  146 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT------TCCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH------HcCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeC
Confidence            99999999999999877665  23333221      246899999999998654311     11222 345447899999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q psy4094         610 KDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       610 KtGeNVeELFe~IIr~Ile  628 (663)
                      ++|.|+.++|++|++.+.+
T Consensus       147 ~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGG
T ss_pred             cCCCChHHHHHHHHHhcCc
Confidence            9999999999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.75  E-value=8.5e-18  Score=178.86  Aligned_cols=167  Identities=20%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCc---cccceee------------eceeEEEecC--CceeEEEEEEeCCCc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPH---YRATIGV------------DFALKVLSWD--HETIIRLQLWDIAGQ  518 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee---~~~Tigi------------Df~~ktV~vd--ge~~vkLqIwDTpGQ  518 (663)
                      ...++|+|+|+.++|||||+++|++......   ...+++.            +.......+.  ......+.|||||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            4568999999999999999999997543321   1111110            0000000111  111368999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIK  597 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak  597 (663)
                      ++|...+..++..+|++|||+|+++..++.....|+..+...      ...|+|+|+||+|+.+.. .....+++.+++.
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc------CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777778887766643      125899999999986532 0111223334443


Q ss_pred             HcC--CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         598 EHN--FSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       598 ~~g--~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      .++  .+++|++||++|.||++||++|.+.+..
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            332  2579999999999999999999987644

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.75  E-value=4.9e-18  Score=185.78  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCC-------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQF-------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYY  529 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~-------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~  529 (663)
                      ..++|+++|+.++|||||+++|.+..       +..++.++++++.....+.+++   ..+.|||||||++|...+..++
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN---YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT---EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC---EEEEEEECCChHHHHHHHHHHH
Confidence            46899999999999999999999866       3455666677766666666654   5799999999999999999999


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc-C--CCeEE
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH-N--FSGWF  605 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~-g--~i~ff  605 (663)
                      ..+|++|||||+++...-+... ++..+..       .++|+|+|+||+|+.... .....+++.+++... +  ..+++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e-~l~~~~~-------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGE-HMLILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH-HHHHHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhCCEEEEEEecCCCccHHHHH-HHHHHHH-------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            9999999999999854333322 2223332       348889999999997522 122345566666655 2  25799


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHH
Q psy4094         606 ETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ++||++|.||++|+++|.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999999999999999775

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.75  E-value=1.1e-17  Score=178.38  Aligned_cols=166  Identities=21%  Similarity=0.189  Sum_probs=107.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC---CCCCcccc--ceeeeceeEEEec-------------C--Cc---eeEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRA--TIGVDFALKVLSW-------------D--HE---TIIRLQL  512 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~--TigiDf~~ktV~v-------------d--ge---~~vkLqI  512 (663)
                      ...++|+++|+.++|||||+++|.+.   .+..++.+  |+.+.|....+..             +  +.   ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45689999999999999999999853   44455556  4444444333321             1  11   1268999


Q ss_pred             EeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHH
Q psy4094         513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPA  590 (663)
Q Consensus       513 wDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~e  590 (663)
                      ||||||++|...+...+..+|++|||||++++. .-+.. .++..+.. +     ...|+|||+||+|+..... ....+
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~-l-----~~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK-EHLMALEI-L-----GIDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH-HHHHHHHH-T-----TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH-HHHHHHHH-c-----CCCeEEEEEEccCCCCHHHHHHHHH
Confidence            999999999888877788899999999999754 22222 22222221 1     1247999999999976442 23456


Q ss_pred             HHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         591 KIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       591 ei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      ++.+++..+  ...++|++||++|.||++||++|.+.+..
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            677777653  23579999999999999999999886643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.75  E-value=1.1e-19  Score=202.24  Aligned_cols=160  Identities=14%  Similarity=0.161  Sum_probs=125.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      ..+|+|+|+.++|||||+++|.+..+...+.++++.++....+.+++.  ..+.|||||||+.|..++..+++.+|++||
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            368999999999999999999988777777888888888877777543  368999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHHc-CCCeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF---IKEH-NFSGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql---ak~~-g~i~ffEtSAKtGe  613 (663)
                      |||+++....+....|.. +.       ..++|+|||+||+|+.........++...+   +..+ +.++||++||++|.
T Consensus        82 VVDa~dg~~~qt~e~l~~-~~-------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~  153 (537)
T 3izy_P           82 VVAADDGVMKQTVESIQH-AK-------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE  153 (537)
T ss_dssp             ECBSSSCCCHHHHHHHHH-HH-------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred             EEECCCCccHHHHHHHHH-HH-------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence            999999887776655532 22       245899999999999764423233333222   1111 12479999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKIL  627 (663)
Q Consensus       614 NVeELFe~IIr~Il  627 (663)
                      ||+++|++|...+.
T Consensus       154 GI~eLle~I~~l~~  167 (537)
T 3izy_P          154 NMMALAEATIALAE  167 (537)
T ss_dssp             SSHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHhhh
Confidence            99999999988764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.75  E-value=2.5e-17  Score=161.26  Aligned_cols=165  Identities=14%  Similarity=0.130  Sum_probs=111.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCcccc--ceeeeceeEEEecCCceeEEEEEEeCCCc-----------cchh
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRA--TIGVDFALKVLSWDHETIIRLQLWDIAGQ-----------ERFG  522 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~--TigiDf~~ktV~vdge~~vkLqIwDTpGQ-----------Erfr  522 (663)
                      ...++|+|||..|||||||+++|++..+.....+  +++.++....+.+++   ..+.||||||.           ..+.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE---TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT---EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC---ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            4568999999999999999999999887665555  566666666777766   37899999994           3445


Q ss_pred             hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHH
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN------PAKIDEFI  596 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs------~eei~qla  596 (663)
                      ..+..+++.+|++|+|||+++....  ...|+..+...+..  ....|+|||+||+|+.... .+.      .+.++.++
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE--RARSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH--HHGGGEEEEEECGGGC-------------CHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh--hccceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHH
Confidence            5555666788999999999864442  12333333322110  1235899999999986543 111      24678888


Q ss_pred             HHcCCCeEEEEeCCCC-----cCHHHHHHHHHHHHHhh
Q psy4094         597 KEHNFSGWFETSAKDN-----INIDDAAKTLVQKILEN  629 (663)
Q Consensus       597 k~~g~i~ffEtSAKtG-----eNVeELFe~IIr~Ile~  629 (663)
                      ...+. .|+.+++..+     .+|.+||..|.+.+.+.
T Consensus       179 ~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          179 DIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            88885 6888877654     68999999888776543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.74  E-value=5.6e-18  Score=167.57  Aligned_cols=164  Identities=9%  Similarity=0.121  Sum_probs=111.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC-CCCccccc-eeeeceeEEEecCCceeEEEEEEeCCCccchhh----------
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF-FSPHYRAT-IGVDFALKVLSWDHETIIRLQLWDIAGQERFGN----------  523 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~~~T-igiDf~~ktV~vdge~~vkLqIwDTpGQErfrs----------  523 (663)
                      ...++|+|+|+.|||||||+++|++.. +...+.++ ++.++....+.+++   ..+.||||||+..+..          
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN---REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT---EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC---CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            345899999999999999999999876 44444444 55566666666665   4799999999876532          


Q ss_pred             -hHHHHHhcCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEe-CCCCCCCCCCCCH-------HHHH
Q psy4094         524 -MTRVYYKEAVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVLLAN-KCDQPKEGIANNP-------AKID  593 (663)
Q Consensus       524 -l~~~~~r~ADgaILVyDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIILVGN-KsDL~der~~Vs~-------eei~  593 (663)
                       ....+++.+|++|+|||+++.... ..+..|+..+.   .  .....|+|+|+| |+|+....  +..       .++.
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~---~--~~~~~~~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~  169 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF---G--EDAMGHTIVLFTHKEDLNGGS--LMDYMHDSDNKALS  169 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH---C--GGGGGGEEEEEECGGGGTTCC--HHHHHHHCCCHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh---C--chhhccEEEEEEcccccCCcc--HHHHHHhcchHHHH
Confidence             223367899999999999862222 22333443332   1  011246666665 99997532  111       3345


Q ss_pred             HHHHHcCCCe--E--EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         594 EFIKEHNFSG--W--FETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       594 qlak~~g~i~--f--fEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      .++...+...  |  ++|||++|.|++++|++|++.+...
T Consensus       170 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          170 KLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            5666665321  3  7899999999999999999988664

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.74  E-value=6.6e-18  Score=185.41  Aligned_cols=152  Identities=14%  Similarity=0.171  Sum_probs=119.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc-chh--------hhHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-RFG--------NMTRVY  528 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-rfr--------sl~~~~  528 (663)
                      ++|+|+|.+|||||||+++|++..+. ....++++.++....+.+++   +.+.||||+|+. ++.        .....+
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g---~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT---EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC---eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            79999999999999999999987543 44556677788888888876   468999999998 654        234568


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ++.+|++|+|||++++.+++... +++.+         .++|+|||+||+|+...   +..+++..++. .+ .++|+||
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l---------~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~-~~~i~iS  385 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI---------KNKRYLVVINKVDVVEK---INEEEIKNKLG-TD-RHMVKIS  385 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH---------TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CS-TTEEEEE
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh---------cCCCEEEEEECcccccc---cCHHHHHHHhc-CC-CcEEEEE
Confidence            89999999999999998887643 22222         25899999999999653   34455555543 22 4799999


Q ss_pred             CCCCcCHHHHHHHHHHHHHh
Q psy4094         609 AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|.||+++|++|.+.+..
T Consensus       386 Aktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          386 ALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             GGGTCCHHHHHHHHHHHTHH
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999998764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.74  E-value=7.7e-18  Score=177.96  Aligned_cols=118  Identities=18%  Similarity=0.152  Sum_probs=95.8

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT----------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVT----------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      +.|+|||++||++|+.+|..||++++++|||||++          +..+|.....|+..+..+   ....++|+||||||
T Consensus       161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~---~~~~~~piiLv~NK  237 (340)
T 4fid_A          161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN---EFLKGAVKLIFLNK  237 (340)
T ss_dssp             CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC---GGGTTSEEEEEEEC
T ss_pred             eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh---hccCCCeEEEEEEC
Confidence            68999999999999999999999999999999999          678888888887777642   23357999999999


Q ss_pred             CCCCCCC--------------CCCCHHHHHHHHHH-c-------------------------CCCeEEEEeCCCCcCHHH
Q psy4094         578 CDQPKEG--------------IANNPAKIDEFIKE-H-------------------------NFSGWFETSAKDNINIDD  617 (663)
Q Consensus       578 sDL~der--------------~~Vs~eei~qlak~-~-------------------------g~i~ffEtSAKtGeNVeE  617 (663)
                      +||..++              .....+++.+++.. +                         ..+.+++|||+++.||+.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            9985421              11346666665543 2                         125689999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|..+.+.|+.
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.73  E-value=7.3e-18  Score=179.21  Aligned_cols=159  Identities=14%  Similarity=0.106  Sum_probs=117.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhC-------CCC---------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQ-------FFS---------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~-------~fs---------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      .++|+++|+.++|||||+++|++.       .+.         .+....++++.....+...+   ..+.|||||||++|
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA---RHYAHTDCPGHADY   79 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS---CEEEEEECSSHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC---eEEEEEECCChHHH
Confidence            489999999999999999999863       111         11234445554433333332   57999999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIKE  598 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak~  598 (663)
                      ...+..+++.+|++|||||+++....+....| ..+..       .++| +|+|+||+|+....  .....+++.+++..
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~  151 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998766665555 33332       3578 78999999987421  11223567778887


Q ss_pred             cCC----CeEEEEeCCCCcC----------HHHHHHHHHHHHH
Q psy4094         599 HNF----SGWFETSAKDNIN----------IDDAAKTLVQKIL  627 (663)
Q Consensus       599 ~g~----i~ffEtSAKtGeN----------VeELFe~IIr~Il  627 (663)
                      +++    ++|+++||++|.|          +.+||+.|.+.+.
T Consensus       152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            774    5899999999876          8899998887664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.73  E-value=4.9e-17  Score=174.80  Aligned_cols=160  Identities=18%  Similarity=0.146  Sum_probs=111.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh------------
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM------------  524 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl------------  524 (663)
                      .++|+|||++|||||||+++|++.... ....++++.+.....+.+++.   .+.+|||+|+.++...            
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~---~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR---KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE---EEEESSCSCC-----------CCSCCHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE---EEEEEECCCCccccccchhhHHHHHHHH
Confidence            489999999999999999999987653 334455666676677777774   5899999998543221            


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HHHH---cC
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-FIKE---HN  600 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-lak~---~g  600 (663)
                      ...+++.+|++++|||++++.+++.. .+...+..       .+.|+|+|+||+|+.+.+ ....+++.. +...   .+
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-------~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~  327 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-------RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFID  327 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGT
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCC
Confidence            13578899999999999998777653 23333331       458999999999997644 233333332 2232   23


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ..+++++||++|.||+++|+.|.+.+...
T Consensus       328 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          328 YSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            45899999999999999999999877554

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.73  E-value=6e-18  Score=179.91  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=116.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC--------CCCC---------ccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ--------FFSP---------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~--------~fse---------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ...++|+++|+.++|||||+++|++.        .+..         +...+++++.....+...+   ..+.|||||||
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~~~iiDtpG~   85 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK---RHYSHVDCPGH   85 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS---CEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC---eEEEEEECCCh
Confidence            45689999999999999999999872        2211         1123344444333333332   57899999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF  595 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql  595 (663)
                      ++|...+..++..+|++|+|||++++...+. ..|+..+..       .++| +|+|+||+|+....  .....+++.++
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-------~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~  157 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-------VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL  157 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-------TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999998776554 455555542       2578 89999999997421  11123456777


Q ss_pred             HHHcCC----CeEEEEeCCCCcC------------------HHHHHHHHHHHHH
Q psy4094         596 IKEHNF----SGWFETSAKDNIN------------------IDDAAKTLVQKIL  627 (663)
Q Consensus       596 ak~~g~----i~ffEtSAKtGeN------------------VeELFe~IIr~Il  627 (663)
                      +..+++    .+++++||++|.|                  +.+|++.|.+.+.
T Consensus       158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            877764    6899999999988                  6777777766553

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.73  E-value=7.4e-18  Score=181.65  Aligned_cols=121  Identities=16%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      +.|+||||+||++|+.+|..||++++++|||||+++          ..+|+.+..|+..+...   ....++||||||||
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~---~~~~~~piiLvgNK  293 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN---RWLRTISVILFLNK  293 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC---TTCSSCCEEEEEEC
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc---ccCCCCeEEEEEEC
Confidence            789999999999999999999999999999999999          89999999999888742   23467999999999


Q ss_pred             CCCCCCCC--CC---------------------------CHHHHHHHH-----HHc-------CCCeEEEEeCCCCcCHH
Q psy4094         578 CDQPKEGI--AN---------------------------NPAKIDEFI-----KEH-------NFSGWFETSAKDNINID  616 (663)
Q Consensus       578 sDL~der~--~V---------------------------s~eei~qla-----k~~-------g~i~ffEtSAKtGeNVe  616 (663)
                      +||..++.  .+                           ..+++..|+     ..+       ..+.+++|||+++.||+
T Consensus       294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~  373 (402)
T 1azs_C          294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR  373 (402)
T ss_dssp             HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred             hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence            99854331  01                           135566654     221       12467899999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy4094         617 DAAKTLVQKILENDK  631 (663)
Q Consensus       617 ELFe~IIr~Ile~~k  631 (663)
                      ++|.++.+.|+....
T Consensus       374 ~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          374 RVFNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998876654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.72  E-value=6.6e-18  Score=179.27  Aligned_cols=119  Identities=13%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK  577 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK  577 (663)
                      +.++||||+||++|+.+|..||++++++|||||+++          ..+|..+..|+..+..+   ....++|+|||+||
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~---~~~~~~piILv~NK  277 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN---RVFSNVSIILFLNK  277 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC---GGGTTSEEEEEEEC
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc---hhhCCCCEEEEEEC
Confidence            789999999999999999999999999999999999          78899998898877642   22357999999999


Q ss_pred             CCCCCCC--------------C-CCCHHHHHHHHH-----------HcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         578 CDQPKEG--------------I-ANNPAKIDEFIK-----------EHNFSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       578 sDL~der--------------~-~Vs~eei~qlak-----------~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      +||..++              . .+..+++..++.           ..+ +.|++|||+++.||+++|.++++.|+...
T Consensus       278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            9985321              0 256778887762           223 47899999999999999999999987654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.72  E-value=2.3e-17  Score=175.62  Aligned_cols=167  Identities=20%  Similarity=0.184  Sum_probs=114.3

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhC---CCCCccccceee--eceeEEEec-------------C--Cc---eeEEEE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGV--DFALKVLSW-------------D--HE---TIIRLQ  511 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~Tigi--Df~~ktV~v-------------d--ge---~~vkLq  511 (663)
                      ....++|+++|+.++|||||+++|.+.   .+..++.+.+++  .|....+..             +  +.   ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            345689999999999999999999953   344555664443  443333321             1  11   126899


Q ss_pred             EEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCH
Q psy4094         512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNP  589 (663)
Q Consensus       512 IwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~  589 (663)
                      |||||||++|...+...+..+|++|||||+++.. .-+....| ..+...      ...|+|+|+||+|+..... ....
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII------GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc------CCCcEEEEEECccCCCHHHHHHHH
Confidence            9999999999888888888999999999999754 22222222 222221      1257999999999875320 1123


Q ss_pred             HHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         590 AKIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       590 eei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +++.+++...  ...++|++||++|.||++||++|.+.+..
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            4455555542  23589999999999999999999886643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.72  E-value=8.6e-18  Score=183.11  Aligned_cols=157  Identities=14%  Similarity=0.150  Sum_probs=103.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF-------------------------------FSPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~-------------------------------fsee~~~TigiDf~~ktV~vdg  504 (663)
                      ...+||+|+|+.++|||||+++|+...                               ...+..++++++.....+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            346999999999999999999997541                               1122334555555555555443


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV--LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L--~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                         +.+.|||||||++|...+..++.++|++|||||++++.++..+  ..|..++...+...  ...|+|||+||+|+..
T Consensus       111 ---~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~  185 (483)
T 3p26_A          111 ---ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD  185 (483)
T ss_dssp             ---CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred             ---ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence               5799999999999999999999999999999999997654331  11111111111111  1246999999999976


Q ss_pred             CCCCCC----HHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094         583 EGIANN----PAKIDEFIKEHNF----SGWFETSAKDNINIDDA  618 (663)
Q Consensus       583 er~~Vs----~eei~qlak~~g~----i~ffEtSAKtGeNVeEL  618 (663)
                      .+ ...    .+++..++..+++    ++|++|||++|.||+++
T Consensus       186 ~~-~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          186 WS-QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             TC-HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             ch-HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            33 122    2344445554443    57999999999999853

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.72  E-value=9.1e-18  Score=183.35  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=108.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHH--------H
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRV--------Y  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~--------~  528 (663)
                      .++|+|+|.+|||||||+++|++..+. ....++++.++....+.+++   +.+.||||+|+..+...+..        +
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG---IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT---EEEEECC--------------------CC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC---EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            479999999999999999999986543 44556777788777888776   46899999998766544433        5


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      +..+|++|+|||++++.++.. ..|+..+.         ..|+|+|+||+|+.... .+.  .+..+.   ...++++||
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~---------~~piivV~NK~Dl~~~~-~~~--~~~~~~---~~~~~i~iS  364 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK---------HRPLILVMNKIDLVEKQ-LIT--SLEYPE---NITQIVHTA  364 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT---------TSCEEEEEECTTSSCGG-GST--TCCCCT---TCCCEEEEB
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc---------CCcEEEEEECCCCCcch-hhH--HHHHhc---cCCcEEEEE
Confidence            788999999999999887766 45555443         26999999999997644 111  111111   235799999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhh
Q psy4094         609 AKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile~  629 (663)
                      |++|.||+++|++|.+.+...
T Consensus       365 Aktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          365 AAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             TTTTBSHHHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999987654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.71  E-value=1.3e-17  Score=179.21  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=108.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC---CCCc------------------------------cccceeeeceeEEEec
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF---FSPH------------------------------YRATIGVDFALKVLSW  502 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~---fsee------------------------------~~~TigiDf~~ktV~v  502 (663)
                      +..++|+|+|+.++|||||+++|+.+.   +...                              ..++++++.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456899999999999999999998643   1100                              0122333333333333


Q ss_pred             CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q psy4094         503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQP  581 (663)
Q Consensus       503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~  581 (663)
                      ++   ..+.|||||||++|...+..++..+|++|||||++++...+. ..|+..+..       .++ ++|||+||+|+.
T Consensus       102 ~~---~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-------~~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          102 AK---RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-------LGIKHIVVAINKMDLN  170 (434)
T ss_dssp             SS---EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-------TTCCEEEEEEECTTTT
T ss_pred             CC---ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEEcCcCC
Confidence            33   579999999999999999999999999999999998765444 344444432       134 599999999997


Q ss_pred             CCC---CCCCHHHHHHHHHHcC--C--CeEEEEeCCCCcCHHHHHH
Q psy4094         582 KEG---IANNPAKIDEFIKEHN--F--SGWFETSAKDNINIDDAAK  620 (663)
Q Consensus       582 der---~~Vs~eei~qlak~~g--~--i~ffEtSAKtGeNVeELFe  620 (663)
                      ...   .....+++..++..++  .  .+++++||++|.||+++|.
T Consensus       171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            522   1112355667777776  2  5799999999999998543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.71  E-value=3.3e-17  Score=181.59  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC------------------CC----CccccceeeeceeEEEecCCceeEEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF------------------FS----PHYRATIGVDFALKVLSWDHETIIRLQLW  513 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~------------------fs----ee~~~TigiDf~~ktV~vdge~~vkLqIw  513 (663)
                      ....+|+|+|++|||||||+++|+...                  +.    .+..+++++......+.+.+   +.++||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~li   87 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD---YLINLL   87 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT---EEEEEE
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC---EEEEEE
Confidence            356799999999999999999997211                  10    01123344444444555543   689999


Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      |||||.+|...+..+++.+|++|+|+|++++..++....|.. +.       ..++|+|+|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~-------~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CR-------LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HH-------TTTCCEEEEEECTTSCCS
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH-------HcCCCEEEEEeCCCCccc
Confidence            999999999999999999999999999999988888776643 32       135899999999999653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=2.4e-18  Score=181.63  Aligned_cols=166  Identities=16%  Similarity=0.286  Sum_probs=100.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC-CCCCcc--------ccceeeeceeEEEecCCceeEEEEEEeCCCc-------cc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ-FFSPHY--------RATIGVDFALKVLSWDHETIIRLQLWDIAGQ-------ER  520 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~-~fsee~--------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ-------Er  520 (663)
                      ..++|+|||+.|+|||||++++++. .+...+        .+++++++....+..++. .+.|+||||+|+       +.
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~-~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGV-KLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CE-EEEEEEEC-------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCc-ccceEEEEeccccccCccHHH
Confidence            4589999999999999999997654 333333        256666655544544443 578999999999       77


Q ss_pred             hhhhHH-------HHHhcCcEE-----------EEEEeCCC-cccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         521 FGNMTR-------VYYKEAVGA-----------FIVFDVTR-AATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       521 frsl~~-------~~~r~ADga-----------ILVyDVTd-~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      |..++.       .|++.++++           ++||++++ ..++..+. .|+..+.        .++|+|+|+||+|+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~--------~~~piIlV~NK~Dl  186 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--------NKVNIVPVIAKADT  186 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--------S-SCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--------cCCCEEEEEECCCC
Confidence            888887       888877665           47787776 56666665 4444332        46899999999998


Q ss_pred             CCCCCCCCH--HHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094         581 PKEGIANNP--AKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA  634 (663)
Q Consensus       581 ~der~~Vs~--eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~~~  634 (663)
                      ...+ .+..  +++..++..+++ +||++||++|.| ++.|.++++.|........
T Consensus       187 ~~~~-ev~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v  239 (361)
T 2qag_A          187 LTLK-ERERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKASIPFSV  239 (361)
T ss_dssp             SCHH-HHHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred             CCHH-HHHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence            7543 2222  456667766774 899999999999 9999999999987665433

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.70  E-value=1.3e-17  Score=166.99  Aligned_cols=161  Identities=22%  Similarity=0.289  Sum_probs=106.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc------cccce-----------------e---eece--------------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH------YRATI-----------------G---VDFA--------------  496 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee------~~~Ti-----------------g---iDf~--------------  496 (663)
                      ..++|+|+|.+|||||||+++|++..+.+.      +.++.                 |   .++.              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999877421      12220                 0   0000              


Q ss_pred             ---------eEEEecCCceeEEEEEEeCCCcc-------------chhhhHHHHHhcCcEEE-EEEeCCCcccHHHHHHH
Q psy4094         497 ---------LKVLSWDHETIIRLQLWDIAGQE-------------RFGNMTRVYYKEAVGAF-IVFDVTRAATFDAVLKW  553 (663)
Q Consensus       497 ---------~ktV~vdge~~vkLqIwDTpGQE-------------rfrsl~~~~~r~ADgaI-LVyDVTd~~SFe~L~~w  553 (663)
                               ...+.+.+.....+.||||||+.             .+..++..|++.++++| +|+|+++......+..|
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                     00011100001469999999963             46678888999999877 69999886655554455


Q ss_pred             HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--cCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         554 KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE--HNFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       554 ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~--~g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +..+.       ..+.|+|+|+||+|+.... ....+.+......  .++.+++++||++|.|++++|++|.+.
T Consensus       185 ~~~~~-------~~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          185 AKEVD-------PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHC-------TTCSSEEEEEECGGGSCTT-CCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHhC-------CCCCeEEEEEEccccCCCC-chHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            55443       2468999999999997654 2223322211101  133468899999999999999999874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.70  E-value=1.5e-16  Score=168.65  Aligned_cols=163  Identities=15%  Similarity=0.100  Sum_probs=113.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc---------chhhhHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE---------RFGNMTRVYYK  530 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE---------rfrsl~~~~~r  530 (663)
                      .|+|+|.+|||||||+++|.+..+........+.++....+.+++.   .+.+|||+|+.         .|+..+. .+.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~---~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~  256 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR---KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK  256 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE---EEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE---EEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence            4999999999999999999987765444555666777788888773   68999999972         2333333 578


Q ss_pred             cCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-C-CCeEEE
Q psy4094         531 EAVGAFIVFDVTRAA--TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-N-FSGWFE  606 (663)
Q Consensus       531 ~ADgaILVyDVTd~~--SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-g-~i~ffE  606 (663)
                      .+|++|+|||++++.  .+..+..|...+...    ...++|+|+|+||+|+.........+.+..++..+ . ...+++
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            899999999999887  667777777666643    23468999999999986532000012233344554 2 236899


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         607 TSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      +||++|.|+++++++|.+.+....
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EECCCCcCHHHHHHHHHHHhcccC
Confidence            999999999999999998776543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.70  E-value=2.2e-18  Score=187.52  Aligned_cols=157  Identities=18%  Similarity=0.225  Sum_probs=96.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh--CCCC-----------------------------CccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH--QFFS-----------------------------PHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg--~~fs-----------------------------ee~~~TigiDf~~ktV~vdg  504 (663)
                      ...++|+++|+.++|||||+++|+.  +.+.                             .+....++++.....+.+++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4568999999999999999999974  2221                             11123445555545555554


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ  580 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL  580 (663)
                         ..+.|||||||++|...+..++..+|++|||||++++   .+|+....|.+.+....    ..++| +|||+||+|+
T Consensus       121 ---~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl  193 (467)
T 1r5b_A          121 ---RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDE  193 (467)
T ss_dssp             ---EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTS
T ss_pred             ---eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccC
Confidence               5799999999999999999999999999999999986   34443333433332211    13577 9999999999


Q ss_pred             CCCC-----CCCCHHHHHHHHHHc-CC-----CeEEEEeCCCCcCHHHHH
Q psy4094         581 PKEG-----IANNPAKIDEFIKEH-NF-----SGWFETSAKDNINIDDAA  619 (663)
Q Consensus       581 ~der-----~~Vs~eei~qlak~~-g~-----i~ffEtSAKtGeNVeELF  619 (663)
                      ....     +....+++..++..+ ++     ++|+++||++|.||.++|
T Consensus       194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          194 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            6422     112234567777766 43     469999999999998866

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.69  E-value=7.6e-17  Score=152.42  Aligned_cols=156  Identities=17%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhhhHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGNMTRV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrsl~~~  527 (663)
                      .++|+|+|.+|||||||++++++..+...+.++.|..+....+.+++.    +.+||++|+.          .|+.....
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~----~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG----KRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT----EEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC----EEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            479999999999999999999987655455566665554444444443    7899999984          24444455


Q ss_pred             HH---hcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcC-
Q psy4094         528 YY---KEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHN-  600 (663)
Q Consensus       528 ~~---r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g-  600 (663)
                      ++   ..++++++|+|++++.++..  +..|+..          .++|+++|+||+|+.... .....+.+..++...+ 
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            55   46899999999998776643  3334321          348999999999975421 0111345555665554 


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .+.+++|||+++.|+++++++|.+.+.
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            356889999999999999999988653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.69  E-value=3.4e-17  Score=168.25  Aligned_cols=158  Identities=17%  Similarity=0.180  Sum_probs=108.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCcc-c--------hhhhHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-R--------FGNMTRV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-r--------frsl~~~  527 (663)
                      ..+|+|||++|||||||+++|++..+.. ...+..+.+...-.+..+   ...+.+|||+|+. .        +......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~---~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG---AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET---TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC---CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3589999999999999999999876542 122222212112223322   2579999999997 3        2233345


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      +++.+|++++|+|+++   +.....|+.....      ..+.|+|||+||+|+...+ ....+.+..++..+++..++++
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~------~~~~P~ilvlNK~D~~~~~-~~~~~~l~~l~~~~~~~~~i~i  154 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR------EGKAPVILAVNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPI  154 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH------SSSSCEEEEEESTTTCCCH-HHHHHHHHHHHTTSCCSEEEEC
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH------hcCCCEEEEEECcccCccH-HHHHHHHHHHHHhcCcCceEEE
Confidence            6778999999999987   3333345433221      2458999999999986522 2233455556666675579999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHh
Q psy4094         608 SAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile  628 (663)
                      ||++|.|+++++++|.+.+..
T Consensus       155 SA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          155 SAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             CTTTTTTHHHHHHHHHTTCCB
T ss_pred             ECCCCCCHHHHHHHHHHhCCc
Confidence            999999999999999887654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.69  E-value=2.5e-17  Score=165.81  Aligned_cols=161  Identities=17%  Similarity=0.277  Sum_probs=97.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC-CCCcc-------ccceeeeceeEEEecCCceeEEEEEEeCCCcc-------c
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF-FSPHY-------RATIGVDFALKVLSWDHETIIRLQLWDIAGQE-------R  520 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~-------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-------r  520 (663)
                      ...++|+|+|.+|+|||||++++++.. +...+       .+|+++++....+..++. .+.+.||||+|+.       .
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV-QLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--C-CEEEEEEECCCCSCCSCCTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCe-EEEEEEEECCCccccccchhh
Confidence            356999999999999999999977644 34444       677887877777766664 5789999999973       3


Q ss_pred             hhhhH-------HHHHhc-------------CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         521 FGNMT-------RVYYKE-------------AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       521 frsl~-------~~~~r~-------------ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      |..+.       ..|+..             +|++|++++.+.......-..|+..+..        ++|+|+|+||+|+
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--------~~pvi~V~nK~D~  156 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------KVNIIPLIAKADT  156 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--------TSCEEEEESSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--------cCCEEEEEeccCC
Confidence            55554       556665             7899999977653322222345554441        6899999999998


Q ss_pred             CCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         581 PKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       581 ~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      .... .....+.+.+.+..+++ .+|++||.++.|+++++++|.+.+
T Consensus       157 ~~~~e~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          157 LTPEECQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence            5422 01112344555556674 789999999999999999988754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.69  E-value=1.4e-17  Score=180.87  Aligned_cols=151  Identities=16%  Similarity=0.139  Sum_probs=109.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC--CCCC-----------------------------ccccceeeeceeEEEecCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ--FFSP-----------------------------HYRATIGVDFALKVLSWDHE  505 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~--~fse-----------------------------e~~~TigiDf~~ktV~vdge  505 (663)
                      ..++|+++|+.++|||||+++|++.  .+..                             +..++++++.....+...+ 
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence            4689999999999999999999864  2221                             1124455555555555443 


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cH----HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TF----DAVLKWKQDLDAKVTLPDGNPIP-CVLLANK  577 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SF----e~L~~wieeL~~~~~~~~~~~IP-IILVGNK  577 (663)
                        ..+.|||||||++|...+..++..+|++|||||++++.   +|    +... ++..+..       .++| +|||+||
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~-------~~v~~iivviNK  154 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT-------LGVRQLIVAVNK  154 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH-------TTCCEEEEEEEC
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH-------cCCCeEEEEEEc
Confidence              57999999999999999999999999999999999763   33    2322 2222221       2465 9999999


Q ss_pred             CCCCCCC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094         578 CDQPKEG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDA  618 (663)
Q Consensus       578 sDL~der---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeEL  618 (663)
                      +|+....   .....+++..++..+++    ++|+++||++|.||.++
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9997321   11234556777777774    58999999999999865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.69  E-value=8.9e-17  Score=170.59  Aligned_cols=149  Identities=9%  Similarity=-0.012  Sum_probs=113.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      +|+++|+.++|||||+++|+        .+.++++.....+...+   ..+.|||||||++|...+..+++.+|++||||
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~---~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv   91 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG---RNMVFVDAHSYPKTLKSLITALNISDIAVLCI   91 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS---SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC---eEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence            99999999999999999997        44555566555566554   36999999999999988889999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe-CCCCCCCCC-CCCHHHHHHHHHHcC--CCeEEE--EeCCC-
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLAN-KCDQPKEGI-ANNPAKIDEFIKEHN--FSGWFE--TSAKD-  611 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGN-KsDL~der~-~Vs~eei~qlak~~g--~i~ffE--tSAKt-  611 (663)
                      | ++ ..+.....|+..+..       .++|. |+|+| |+|+ ...+ ....+++++++..++  .+++++  +||++ 
T Consensus        92 d-~~-g~~~qt~e~~~~~~~-------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~  161 (370)
T 2elf_A           92 P-PQ-GLDAHTGECIIALDL-------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK  161 (370)
T ss_dssp             C-TT-CCCHHHHHHHHHHHH-------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred             c-CC-CCcHHHHHHHHHHHH-------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence            9 54 445555666655553       24777 89999 9999 4320 111245556665544  258999  99999 


Q ss_pred             --CcCHHHHHHHHHHHHHhh
Q psy4094         612 --NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       612 --GeNVeELFe~IIr~Ile~  629 (663)
                        +.||+++|+.|.+.+...
T Consensus       162 ~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          162 NPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             STTTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhhcccc
Confidence              999999999999887543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.68  E-value=2.9e-17  Score=177.33  Aligned_cols=154  Identities=17%  Similarity=0.211  Sum_probs=104.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCC--------ccchhhhHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG--------QERFGNMTRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG--------QErfrsl~~~~  528 (663)
                      ..+|+|+|.+|||||||+++|++..+. ....++++.+.....+.+.+   ..++||||+|        +++++.++..+
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN---YDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS---SCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC---ceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            469999999999999999999987654 22233333344444444444   4799999999        88888999999


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      +++||++|+|+|..+.....  ..|+..+..      ..++|+|||+||+|+....     ..+.++. ..++..++++|
T Consensus       100 ~~~ad~il~VvD~~~~~~~~--d~~l~~~l~------~~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iS  165 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTAA--DEEVAKILY------RTKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPIS  165 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCHH--HHHHHHHHT------TCCSCEEEEEECC--------------CCSG-GGSSSSEEECC
T ss_pred             HhhCCEEEEEEeCCCCCChH--HHHHHHHHH------HcCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEee
Confidence            99999999999987654433  344443332      2568999999999986532     1111222 23444678999


Q ss_pred             CCCCcCHHHHHHHHHHHHHh
Q psy4094         609 AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|.|+.++|+.+.+.+..
T Consensus       166 A~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             TTTCTTHHHHHHHHHTTGGG
T ss_pred             cccccchHHHHHHHHhhccc
Confidence            99999999999999887643

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.68  E-value=2.7e-18  Score=189.56  Aligned_cols=156  Identities=15%  Similarity=0.194  Sum_probs=113.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      ..+|+|+|+.++|||||+++|.+..+.....++++.+.....+.+++.   .+.|||||||+.|..++..++..+|++||
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~---~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG---MITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS---CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE---EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            368999999999999999999986666555666766666666666553   68999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH---HHHHHHcC-CCeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI---DEFIKEHN-FSGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei---~qlak~~g-~i~ffEtSAKtGe  613 (663)
                      |||++++...+....|. .+.       ..++|+|||+||+|+.........++.   ..++..++ .++|+++||++|.
T Consensus        81 VVda~~g~~~qT~e~l~-~~~-------~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAIQ-HAK-------AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEETTTBSCTTTHHHHH-HHH-------HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EeecccCccHHHHHHHH-HHH-------hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999864433333332 222       135899999999999753211111000   01112222 2589999999999


Q ss_pred             CHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQ  624 (663)
Q Consensus       614 NVeELFe~IIr  624 (663)
                      ||+++|++|+.
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999999875

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.1e-17  Score=186.03  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-------------------------------cccceeeeceeEEEecCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH-------------------------------YRATIGVDFALKVLSWDHE  505 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee-------------------------------~~~TigiDf~~ktV~vdge  505 (663)
                      ..++|+|+|+++||||||+++|++......                               ..++++++.....+...+ 
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~-  244 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-  244 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence            458999999999999999999986533211                               124556666666666554 


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQP  581 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~  581 (663)
                        +.++|||||||++|...+..+++.+|++|+|||++++.   +|.....+...+....    ..++ ++|||+||+|+.
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~----~lgi~~iIVVvNKiDl~  318 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS----SLGIHNLIIAMNKMDNV  318 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH----TTTCCEEEEEEECTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH----HcCCCeEEEEEeccccc
Confidence              57999999999999999999999999999999999742   1111112222211110    1233 599999999997


Q ss_pred             CCC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094         582 KEG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDA  618 (663)
Q Consensus       582 der---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeEL  618 (663)
                      ..+   .....+++..++...++    ++||+|||++|.||.++
T Consensus       319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            632   11123445556665554    58999999999999976

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.66  E-value=4e-16  Score=175.32  Aligned_cols=162  Identities=17%  Similarity=0.126  Sum_probs=108.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEE------------ecCCceeEEEEEEeCCCccch
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVL------------SWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV------------~vdge~~vkLqIwDTpGQErf  521 (663)
                      ..+|+|+|+.++|||||+++|++..+...    ...+++..+.....            .++.. ...++|||||||++|
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~-~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET-LPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT-CCEEEEECCCTTSCC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccc-cCCEEEEECCCcHHH
Confidence            46999999999999999999987544322    12233322221100            00000 125899999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC------------CH
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN------------NP  589 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V------------s~  589 (663)
                      ..++..+++.+|++|||||++++-.-+....|. .+..       .++|+|||+||+|+.......            ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH-------cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            999999999999999999999943333333332 2221       358999999999986432100            00


Q ss_pred             ----------HHHHHHHHHcC--------------CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         590 ----------AKIDEFIKEHN--------------FSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       590 ----------eei~qlak~~g--------------~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                                .++...+...+              ..+++++||++|.||++|+++|+..+..
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                      01112222222              2379999999999999999999987753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.64  E-value=2.2e-15  Score=170.84  Aligned_cols=114  Identities=16%  Similarity=0.165  Sum_probs=84.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCcc------------------ccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHY------------------RATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~------------------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ...+|+|+|+.|+|||||+++|++.......                  ...+++......+...   .+.++||||+||
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~---~~~~nliDTpG~   84 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR---GHRVFLLDAPGY   84 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET---TEEEEEEECCCS
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC---CEEEEEEeCCCc
Confidence            4579999999999999999999853322111                  1233333333333333   368999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      ++|...+..+++.+|++|+|+|+++....+... |+..+..       .++|+|+|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~-~~~~~~~-------~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER-------LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-------TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhHHH-HHHHHHH-------ccCCEEEEecCCchh
Confidence            999999999999999999999999877666553 3333432       358999999999987

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.63  E-value=4.6e-17  Score=167.33  Aligned_cols=135  Identities=16%  Similarity=0.084  Sum_probs=111.5

Q ss_pred             HHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHH
Q psy4094         473 SIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAV  550 (663)
Q Consensus       473 SLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L  550 (663)
                      +|+.+|+.+.|. ..+.+|+|..+ ...+..++    .++|||+  |++|+.++..||+++|++|+|||++++. +|..+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~----~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l  104 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG----SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII  104 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS----SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEE-EEEEcCCC----eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence            688899999998 89999999444 33333332    5899999  9999999999999999999999999997 79999


Q ss_pred             HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEEeCCCCcCHHHHHHHHHH
Q psy4094         551 LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       551 ~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffEtSAKtGeNVeELFe~IIr  624 (663)
                      ..|+..+..       .++|+|||+||+||...+ .  .+++.+++..++. ..||+|||++|.||+++|..+..
T Consensus       105 ~~~l~~~~~-------~~~piilv~NK~DL~~~~-~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          105 DKFLVLAEK-------NELETVMVINKMDLYDED-D--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHH-------TTCEEEEEECCGGGCCHH-H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHH-------CCCCEEEEEeHHHcCCch-h--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            999988763       369999999999997644 1  2457777777762 37999999999999999988653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.63  E-value=5.7e-16  Score=184.34  Aligned_cols=160  Identities=16%  Similarity=0.117  Sum_probs=112.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC-------CC---------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ-------FF---------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER  520 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~-------~f---------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr  520 (663)
                      ..++|+|+|+.++|||||+++|++.       .+         ..+...+++++.....+...   ...++|||||||++
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~---~~kI~IIDTPGHed  371 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP---TRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS---SCEEEEEECCCHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC---CEEEEEEECCChHH
Confidence            4589999999999999999999863       11         01122333333333333322   35799999999999


Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHH
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIK  597 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak  597 (663)
                      |...+..++..+|++|||||++++...+.. .|+..+..       .++| +|||+||+|+....  .....+++..++.
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~-------lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQ-------VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHH-------HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHH-------cCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            999999999999999999999997655544 34444442       2478 89999999997522  1122356777888


Q ss_pred             HcCC----CeEEEEeCCCC--------cCHHHHHHHHHHHHH
Q psy4094         598 EHNF----SGWFETSAKDN--------INIDDAAKTLVQKIL  627 (663)
Q Consensus       598 ~~g~----i~ffEtSAKtG--------eNVeELFe~IIr~Il  627 (663)
                      .+++    ++|+++||++|        .||.++|+.|.+.+.
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            7764    58999999999        468898888877554

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.63  E-value=3.1e-17  Score=183.92  Aligned_cols=150  Identities=19%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWDH  504 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vdg  504 (663)
                      ...++|+|||+.++|||||+++|+..                               .+..+..++++++.....+..++
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            45689999999999999999999631                               12223355666666666665543


Q ss_pred             ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cH----HHHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q psy4094         505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TF----DAVLKWKQDLDAKVTLPDGNPIP-CVLLAN  576 (663)
Q Consensus       505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SF----e~L~~wieeL~~~~~~~~~~~IP-IILVGN  576 (663)
                         ..|.|||||||++|...+..++..+|++|||||++++.   .|    +.. .++..+..       .++| +|||+|
T Consensus       255 ---~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~-e~l~~~~~-------lgip~iIvviN  323 (592)
T 3mca_A          255 ---KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR-EHAYLLRA-------LGISEIVVSVN  323 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHH-HHHHHHHH-------SSCCCEEEEEE
T ss_pred             ---eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHH-HHHHHHHH-------cCCCeEEEEEe
Confidence               57899999999999999889999999999999999753   11    111 12222221       2365 999999


Q ss_pred             CCCCCCCC---CCCCHHHHHHHH-HHcCC----CeEEEEeCCCCcCHH
Q psy4094         577 KCDQPKEG---IANNPAKIDEFI-KEHNF----SGWFETSAKDNINID  616 (663)
Q Consensus       577 KsDL~der---~~Vs~eei~qla-k~~g~----i~ffEtSAKtGeNVe  616 (663)
                      |+|+....   .....+++..++ ..+++    ++||+|||++|.||.
T Consensus       324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            99986522   111233444555 44554    379999999999998

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.62  E-value=6.5e-15  Score=167.83  Aligned_cols=119  Identities=22%  Similarity=0.317  Sum_probs=88.5

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhC--CCC------C----------ccccceeeeceeEEEecCCceeEEEEEEeC
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQ--FFS------P----------HYRATIGVDFALKVLSWDHETIIRLQLWDI  515 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~--~fs------e----------e~~~TigiDf~~ktV~vdge~~vkLqIwDT  515 (663)
                      ..+..++|+|+|+.|+|||||+++|+..  .+.      .          +....+++......+.+.+   +.++||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~---~~i~liDT   84 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD---HRINIIDT   84 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT---EEEEEECC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC---eEEEEEEC
Confidence            3456789999999999999999999831  110      0          0122333334344444443   68999999


Q ss_pred             CCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       516 pGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      +||.+|...+..+++.+|++|+|||+++..+++....|.....        .++|+|+|+||+|+...
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEECTTSTTC
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCcccC
Confidence            9999999999999999999999999999999998887765333        36899999999998653

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.59  E-value=1.9e-14  Score=164.34  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=88.8

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC--CCCC----------------ccccceeeeceeEEEecCC----ceeEEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ--FFSP----------------HYRATIGVDFALKVLSWDH----ETIIRLQLW  513 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~--~fse----------------e~~~TigiDf~~ktV~vdg----e~~vkLqIw  513 (663)
                      +..++|+|+|+.|+|||||+++|+..  .+..                +....+++......+.+.+    ...+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            45689999999999999999999742  1111                0122333333333444432    123789999


Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      ||+||.+|...+..+++.+|++|+|||+++...++....|.....        .++|+|+|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--------~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--------YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCEEEEEeCCCcccc
Confidence            999999999999999999999999999999888777766643322        35899999999998653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.59  E-value=1.8e-14  Score=159.66  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=81.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCC--CC--------------------CccccceeeeceeEEEecCCceeEEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQF--FS--------------------PHYRATIGVDFALKVLSWDHETIIRLQLW  513 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~--fs--------------------ee~~~TigiDf~~ktV~vdge~~vkLqIw  513 (663)
                      ...++|+|+|+.|+|||||+++|+...  +.                    .+...++++......+.+.+   +.++||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---~~i~li   87 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD---CLVNLL   87 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT---EEEEEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC---eEEEEE
Confidence            356899999999999999999998631  10                    00112222233333344333   689999


Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      |||||++|...+..+++.+|++|+|||++++.....     ..+...+.   ..++|+|+|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~---~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTR---LRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHT---TTTCCEEEEEECTTSCCS
T ss_pred             ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHH---HcCCCEEEEEcCcCCccc
Confidence            999999999999999999999999999998754333     22222221   246899999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.59  E-value=8.9e-16  Score=158.12  Aligned_cols=170  Identities=16%  Similarity=0.241  Sum_probs=93.7

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC-CCCCcc--------ccceeeeceeEEEecCCceeEEEEEEeCCCc-------c
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ-FFSPHY--------RATIGVDFALKVLSWDHETIIRLQLWDIAGQ-------E  519 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~-~fsee~--------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ-------E  519 (663)
                      ...|+|+|||++|||||||++++++. .+...+        ..+++.......+...+. .+.+++||++|+       +
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~-~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV-KLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---C-CEEEEEEEEC----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc-ccCcchhhhhhhhhhcCcHH
Confidence            34589999999999999999998874 444332        123332222223333333 578999999998       6


Q ss_pred             chhhhHH-------HHHhcCcEEE-----------EEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         520 RFGNMTR-------VYYKEAVGAF-----------IVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       520 rfrsl~~-------~~~r~ADgaI-----------LVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                      .|+.+..       .+++...+.+           ++|+... ..+|+.+.  +..++..     ...+++++|+||+|+
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~--~~~l~~l-----~~~~~iilV~~K~Dl  167 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD--VAFMKAI-----HNKVNIVPVIAKADT  167 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH--HHHHHHH-----TTTSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH--HHHHHHH-----HhcCCEEEEEEeCCC
Confidence            7777766       6776554322           4443332 23455443  1233322     135789999999998


Q ss_pred             CCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhhhhc
Q psy4094         581 PKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN  635 (663)
Q Consensus       581 ~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~~~~  635 (663)
                      ...+ ..+..+++.+++..+++ .||++||++| |++++|.++++.+.........
T Consensus       168 ~~~~e~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~avi  221 (301)
T 2qnr_A          168 LTLKERERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASIPFSVV  221 (301)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTCSEECC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCCCceEE
Confidence            6532 11234678888999985 8999999999 9999999999999876654433

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.58  E-value=1.5e-14  Score=144.56  Aligned_cols=122  Identities=12%  Similarity=0.077  Sum_probs=88.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh-----
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK-----  530 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r-----  530 (663)
                      ..++|+|+|+.|||||||+++|++..+. .......+.......+.+++   ..+.||||||+++|......+++     
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG---FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT---EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC---eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4589999999999999999999987753 22233334455555555555   47999999999988766666654     


Q ss_pred             ----cCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         531 ----EAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       531 ----~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                          ++|++|+|+|++... +... ..|+..|...+..  ....|+|+|+||+|+...+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nK~Dl~~~~  167 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK--EIWCKTLLVLTHAQFSPPD  167 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG--GGGGGEEEEEECTTCCCST
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch--hhhcCEEEEEeCcccCCCC
Confidence                789999999998755 4433 4777777765321  1124899999999996443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.57  E-value=4.1e-14  Score=161.29  Aligned_cols=117  Identities=21%  Similarity=0.294  Sum_probs=87.7

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh--CCCCC----------------ccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH--QFFSP----------------HYRATIGVDFALKVLSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg--~~fse----------------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpG  517 (663)
                      +...+|+|+|+.|+|||||+++|+.  +.+..                +..+.+++......+.+.+   +.++||||+|
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---~~i~liDTPG   84 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---HRVNIIDTPG   84 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT---EEEEEECCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC---eeEEEEECcC
Confidence            4568999999999999999999984  22210                0122333333344455443   6799999999


Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                      +.+|...+..+++.+|++|+|+|+++..+++....|.. +..       .++|+|+|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-------~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-------YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH-------TTCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH-------cCCCEEEEEECCCcccc
Confidence            99999999999999999999999999989888877764 332       35899999999998653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.56  E-value=1e-16  Score=153.86  Aligned_cols=163  Identities=18%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeece------------eEEEecC-CceeEEEEEEeCCCccchhh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA------------LKVLSWD-HETIIRLQLWDIAGQERFGN  523 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~------------~ktV~vd-ge~~vkLqIwDTpGQErfrs  523 (663)
                      ..++|+|+|+.|||||||+++|+...+...+..+++.++.            ...+.++ +. .+.+.+||+  ++.++.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~~~~  113 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGK-ECHLDAHLV--GHALED  113 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTT-CSSCCHHHH--HHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCc-eEeccHHHH--HHHHHH
Confidence            3589999999999999999999987766666777777765            3344433 21 122333333  222222


Q ss_pred             hHHHHHhcCcEEEEEEeC--CCcccHHHHHHHHHHHHhhcCCCCCC----------CCcEEEEEeCCCCCCCCCCCCHHH
Q psy4094         524 MTRVYYKEAVGAFIVFDV--TRAATFDAVLKWKQDLDAKVTLPDGN----------PIPCVLLANKCDQPKEGIANNPAK  591 (663)
Q Consensus       524 l~~~~~r~ADgaILVyDV--Td~~SFe~L~~wieeL~~~~~~~~~~----------~IPIILVGNKsDL~der~~Vs~ee  591 (663)
                      +.   +..+|.+++-.+.  ..+.+|+....|+..+...   ....          ..|++||+||+|+...+ .+..++
T Consensus       114 l~---~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~  186 (226)
T 2hf9_A          114 LN---LDEIDLLFIENVGNLICPADFDLGTHKRIVVIST---TEGDDTIEKHPGIMKTADLIVINKIDLADAV-GADIKK  186 (226)
T ss_dssp             SC---GGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEG---GGCTTTTTTCHHHHTTCSEEEEECGGGHHHH-TCCHHH
T ss_pred             Hh---cCCCCEEEEeCCCCccCcchhhhccCcEEEEEec---CcchhhHhhhhhHhhcCCEEEEeccccCchh-HHHHHH
Confidence            21   1122333221110  1111222111221111100   0001          25669999999986532 345677


Q ss_pred             HHHHHHHcC-CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         592 IDEFIKEHN-FSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       592 i~qlak~~g-~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +.+++..++ ..+++++||++|.|++++|++|.+.+..+
T Consensus       187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            777777653 35899999999999999999999887653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.55  E-value=4.3e-15  Score=155.27  Aligned_cols=162  Identities=16%  Similarity=0.193  Sum_probs=108.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcccccee----------------------------------------------
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG----------------------------------------------  492 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tig----------------------------------------------  492 (663)
                      ..|+|||+.|||||||+++|++..+.+....+++                                              
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            4999999999999999999999776432222111                                              


Q ss_pred             ------eeceeEEEecCCceeEEEEEEeCCCccch-------------hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHH
Q psy4094         493 ------VDFALKVLSWDHETIIRLQLWDIAGQERF-------------GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW  553 (663)
Q Consensus       493 ------iDf~~ktV~vdge~~vkLqIwDTpGQErf-------------rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~w  553 (663)
                            +......+.+.+.....+.||||||..++             ..+...|++++|++|+|+|..+.....  ..|
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~  192 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA  192 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence                  00000111111111235899999998876             678888999999999999887644332  344


Q ss_pred             HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         554 KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       554 ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      +..+...    ...+.|+|+|+||+|+.... ....+.+..+...++ .+|+++++..+.++++.+..+.....+
T Consensus       193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~~~~~e  261 (360)
T 3t34_A          193 IKISREV----DPSGDRTFGVLTKIDLMDKG-TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIAARKRE  261 (360)
T ss_dssp             HHHHHHS----CTTCTTEEEEEECGGGCCTT-CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHh----cccCCCEEEEEeCCccCCCc-ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHHHHHHH
Confidence            4444432    23468999999999997654 334444444444445 479999999999999887776555443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.55  E-value=6.4e-15  Score=140.89  Aligned_cols=157  Identities=15%  Similarity=0.105  Sum_probs=99.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeece------------eEEEecCC-----------------ceeE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA------------LKVLSWDH-----------------ETII  508 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~------------~ktV~vdg-----------------e~~v  508 (663)
                      ..+|+|+|..|||||||+++|+...........+..++.            ...+.++.                 ...+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            479999999999999999999875322211222222221            11122211                 0124


Q ss_pred             EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN  588 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs  588 (663)
                      .+.||||+|+.....   .+...++++|+|+|+++...  ....+...+          +.|+++|+||+|+...+ ...
T Consensus       110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~----------~~~~iiv~NK~Dl~~~~-~~~  173 (221)
T 2wsm_A          110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF----------RVADLIVINKVALAEAV-GAD  173 (221)
T ss_dssp             SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH----------HTCSEEEEECGGGHHHH-TCC
T ss_pred             CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh----------hcCCEEEEecccCCcch-hhH
Confidence            688999999621111   11135789999999987642  121222221          27889999999986432 235


Q ss_pred             HHHHHHHHHHcC-CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094         589 PAKIDEFIKEHN-FSGWFETSAKDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       589 ~eei~qlak~~g-~i~ffEtSAKtGeNVeELFe~IIr~Ile~~  630 (663)
                      .+++.+++..++ ..+++++||++|.|++++|++|.+.+....
T Consensus       174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            666777776654 358999999999999999999999886543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.52  E-value=2.1e-14  Score=145.27  Aligned_cols=113  Identities=13%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             EEEEEEeCCCccc-------------hhhhHHHHHhcCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEE
Q psy4094         508 IRLQLWDIAGQER-------------FGNMTRVYYKEAVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVL  573 (663)
Q Consensus       508 vkLqIwDTpGQEr-------------frsl~~~~~r~ADgaILVyDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIIL  573 (663)
                      ..+.||||||..+             +...+..++..+|++|+|||.++.... .....++..+.       ..+.|+|+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-------~~~~~~i~  203 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-------PEGKRTIG  203 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-------SSCSSEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-------CCCCcEEE
Confidence            4699999999753             567778899999999999998543311 11112333232       24689999


Q ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC------CcCHHHHHHHHHHHHHhh
Q psy4094         574 LANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD------NINIDDAAKTLVQKILEN  629 (663)
Q Consensus       574 VGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt------GeNVeELFe~IIr~Ile~  629 (663)
                      |+||+|+.... ....+.+......++ ..|+++++..      +.|+.+++..+.+.+...
T Consensus       204 v~NK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          204 VITKLDLMDKG-TDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             EEECTTSSCSS-CCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             EEcCcccCCcc-hHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99999997644 222332221111111 3577777654      688999999988877653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.52  E-value=3.6e-14  Score=153.44  Aligned_cols=164  Identities=15%  Similarity=0.132  Sum_probs=114.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHH---Hhc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVY---YKE  531 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~---~r~  531 (663)
                      ..|+|||.+|||||||++++.+........+..+.....-.+.+++.  ..+.+||++|...    +..+...+   +..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            36899999999999999999876432111111122222334555542  4689999999743    22233333   456


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                      ++.+|+|+|++ ...+..+..|..++..+..  .....|.|||+||+|+...   ...+.+.+++...++ .+|.+||++
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~--aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~-~vi~iSA~~  308 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEE---EAVKALADALAREGL-AVLPVSALT  308 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTS-CEEECCTTT
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH--HhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCC-eEEEEECCC
Confidence            99999999998 7788888888888776521  1124789999999998653   223444555555564 799999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhh
Q psy4094         612 NINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       612 GeNVeELFe~IIr~Ile~~k  631 (663)
                      ++||+++|++|++.+.....
T Consensus       309 g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          309 GAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTSCC
T ss_pred             ccCHHHHHHHHHHHHHhccc
Confidence            99999999999999876554

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.51  E-value=1.5e-13  Score=153.06  Aligned_cols=118  Identities=16%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh----------------------CCCCCccccceeeeceeEEEecCCceeEEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH----------------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLW  513 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg----------------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIw  513 (663)
                      .+..+|+|||+.++|||||+.+++.                      +....+..+.+++......+.+.+   +.|+|+
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlI  105 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---RVVNLL  105 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT---EEEEEE
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC---EEEEEE
Confidence            3567999999999999999999961                      112245667777777777777765   589999


Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      |||||.+|.....+.++-+|++|+|+|+..+-.-+....|.....        .++|+|++.||+|.....
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--------~~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--------RATPVMTFVNKMDREALH  168 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCCEEEEEECTTSCCCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--------hCCceEEEEecccchhcc
Confidence            999999999999999999999999999999999999888866555        469999999999986544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.48  E-value=2.6e-13  Score=135.99  Aligned_cols=121  Identities=15%  Similarity=0.084  Sum_probs=81.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHH-------HH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTR-------VY  528 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~-------~~  528 (663)
                      ..++|+|+|..|||||||+++|++..+.. ......+.+.....+...   .+.+.||||||+.++..+..       .|
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET---TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC---CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35899999999999999999999877532 222222222222333333   36799999999987653322       12


Q ss_pred             --HhcCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094         529 --YKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE  583 (663)
Q Consensus       529 --~r~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de  583 (663)
                        ++.+|++|+|||++.. ++... ..|+..+...+..  ....|+|+|+||+|+...
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~--~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK--GIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECCSCCCG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc--ccccCEEEEEECcccCCc
Confidence              2479999999999764 34433 4787777654321  112699999999998653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.48  E-value=1.7e-13  Score=156.28  Aligned_cols=166  Identities=14%  Similarity=0.266  Sum_probs=110.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccce--------------eeec--------------------------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATI--------------GVDF--------------------------  495 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~Ti--------------giDf--------------------------  495 (663)
                      ..++|+|+|..|+|||||+|+|++..+.. ...++.              +.++                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            35899999999999999999999876543 222222              1110                          


Q ss_pred             -------------eeEEEecCCce-eEEEEEEeCCCccc---hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy4094         496 -------------ALKVLSWDHET-IIRLQLWDIAGQER---FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD  558 (663)
Q Consensus       496 -------------~~ktV~vdge~-~vkLqIwDTpGQEr---frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~  558 (663)
                                   ....+.++... ...+.||||||...   +...+..++++||++|+|+|+++..++..+..|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00001111000 02489999999765   34567788999999999999999888888777765443


Q ss_pred             hhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHH----------HHHHH----HH-HcC-------CCeEEEEeCC------
Q psy4094         559 AKVTLPDGNPIPCVLLANKCDQPKEGIANNPA----------KIDEF----IK-EHN-------FSGWFETSAK------  610 (663)
Q Consensus       559 ~~~~~~~~~~IPIILVGNKsDL~der~~Vs~e----------ei~ql----ak-~~g-------~i~ffEtSAK------  610 (663)
                      .       .+.|+|+|+||+|+.... .+..+          .+...    +. ..+       ...+|+|||+      
T Consensus       228 ~-------~~~~iiiVlNK~Dl~~~~-~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          228 G-------RGLTVFFLVNAWDQVRES-LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             T-------SCCCEEEEEECGGGGGGG-CSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             h-------hCCCEEEEEECccccccc-ccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence            1       357899999999986432 11111          12111    11 111       1368999999      


Q ss_pred             --------CCcCHHHHHHHHHHHHHhhh
Q psy4094         611 --------DNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       611 --------tGeNVeELFe~IIr~Ile~~  630 (663)
                              ++.|+++++.+|.+.+...+
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence                    99999999999998776544

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.48  E-value=1.3e-14  Score=157.04  Aligned_cols=160  Identities=17%  Similarity=0.266  Sum_probs=85.9

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCC-Ccc-------ccceeeeceeEEEecCCceeEEEEEEeCCCccchh-----
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFS-PHY-------RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-----  522 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~-------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-----  522 (663)
                      ...|+|+|||++|||||||+++|++..+. ..+       ..+++.++....+...+. ...+.+||++|...+.     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~-~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV-QLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCc-ccceeeeechhhhhhccchhh
Confidence            34589999999999999999999987663 111       223332222222222222 3579999999986541     


Q ss_pred             --hhH------------------HHHHhcCcEEEEEEeCCCc-ccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         523 --NMT------------------RVYYKEAVGAFIVFDVTRA-ATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       523 --sl~------------------~~~~r~ADgaILVyDVTd~-~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                        .+.                  ..+++++++.+++|++... .+|+.+. .|+..|.        .++++|+|+||+|+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dl  179 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--------EKVNIIPLIAKADT  179 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT--------TTSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh--------ccCcEEEEEEcccC
Confidence              111                  1123456666677766653 4566554 5776664        25899999999998


Q ss_pred             CCCCCCCCH--HHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         581 PKEGIANNP--AKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       581 ~der~~Vs~--eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      ...+ .+..  +.+.+++..+++ .+|++||+++.|++++|..+...+
T Consensus       180 l~~~-ev~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          180 LTPE-ECQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             SCHH-HHHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred             ccHH-HHHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence            6533 2222  567778888885 799999999999999888887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.47  E-value=1.4e-14  Score=151.30  Aligned_cols=159  Identities=20%  Similarity=0.265  Sum_probs=96.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCcc------ccce----------------------------------------
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHY------RATI----------------------------------------  491 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~------~~Ti----------------------------------------  491 (663)
                      ..+|+|+|.++||||||+++|++..+.+..      .++.                                        
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            469999999999999999999998774211      1221                                        


Q ss_pred             ---eeeceeEEEecCCceeEEEEEEeCCCcc-------------chhhhHHHHHhcCcEEEEEE-eCCCcccHHHHHHHH
Q psy4094         492 ---GVDFALKVLSWDHETIIRLQLWDIAGQE-------------RFGNMTRVYYKEAVGAFIVF-DVTRAATFDAVLKWK  554 (663)
Q Consensus       492 ---giDf~~ktV~vdge~~vkLqIwDTpGQE-------------rfrsl~~~~~r~ADgaILVy-DVTd~~SFe~L~~wi  554 (663)
                         |+......+.+.+.....|.||||||..             .++.+...|+++++.+||++ |.+....-.....|+
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~  190 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA  190 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence               0000011111111112469999999953             45667888888877666654 554322212222233


Q ss_pred             HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH--HHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094         555 QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF--IKEHNFSGWFETSAKDNINIDDAAKTLVQ  624 (663)
Q Consensus       555 eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql--ak~~g~i~ffEtSAKtGeNVeELFe~IIr  624 (663)
                      ..+.       ..+.|+|+|+||+|+.... ....+.+...  ...+++..++++||+++.|++++|+++.+
T Consensus       191 ~~~~-------~~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          191 KEVD-------PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHC-------TTCTTEEEEEECGGGSCTT-CCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHhC-------cCCCceEEEeccccccCcc-hhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3332       2468999999999997644 1122221110  00123345788999999999999999876

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.46  E-value=1.5e-13  Score=159.76  Aligned_cols=118  Identities=20%  Similarity=0.265  Sum_probs=88.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhC------------CCC----CccccceeeeceeEEEec--------------CCc
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQ------------FFS----PHYRATIGVDFALKVLSW--------------DHE  505 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~------------~fs----ee~~~TigiDf~~ktV~v--------------dge  505 (663)
                      +..+||+|||+.|+|||||+++|+..            .+.    .++.+.+++......+.+              ++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            45689999999999999999999863            111    112333333222222222              222


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                       .+.++||||+||.+|...+..+++.+|++|+|||++++.+++....|...+.        .++|+|||+||+|+..
T Consensus        97 -~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 -SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             -EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHHH
T ss_pred             -CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcch
Confidence             5789999999999999999999999999999999999999999887765443        3589999999999863

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.42  E-value=2.1e-13  Score=146.27  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccc------cceeeeceeEE---------------EecCCceeEEEEEEeCCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYR------ATIGVDFALKV---------------LSWDHETIIRLQLWDIAG  517 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~------~TigiDf~~kt---------------V~vdge~~vkLqIwDTpG  517 (663)
                      ++|+|+|.+|||||||+++|.+........      ++.|+.+....               ..+++...+.++||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999876322222      23332211100               012222246899999999


Q ss_pred             ccc----hhhhHHH---HHhcCcEEEEEEeCCCc
Q psy4094         518 QER----FGNMTRV---YYKEAVGAFIVFDVTRA  544 (663)
Q Consensus       518 QEr----frsl~~~---~~r~ADgaILVyDVTd~  544 (663)
                      +..    ++.+...   ++++||++|+|||+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            864    3334443   36899999999999986

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.39  E-value=2.9e-12  Score=146.23  Aligned_cols=119  Identities=20%  Similarity=0.267  Sum_probs=90.1

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHh------------------CCCCCccccceeeeceeEEEecCCc----eeEEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVH------------------QFFSPHYRATIGVDFALKVLSWDHE----TIIRLQLW  513 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg------------------~~fsee~~~TigiDf~~ktV~vdge----~~vkLqIw  513 (663)
                      +...+|+|||+.++|||||+.+|+.                  +....+..+.+++......+.+.+.    ..+.|+|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            5678999999999999999999971                  1112345566666666666665431    14789999


Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      |||||.+|.......++-+|++|+|+|+..+-..+...-|...+..        ++|+|+|.||+|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--------~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--------GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--------TCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--------CCCeEEEEccccccC
Confidence            9999999999999999999999999999999988888888877663        599999999999754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.37  E-value=1.6e-13  Score=155.01  Aligned_cols=161  Identities=18%  Similarity=0.270  Sum_probs=118.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh--CC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH--QF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg--~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      ..||+|||+.++|||||+.+++.  +.                ...+..+.+++......+.+.+   +.|+|+|||||.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlIDTPGH~   78 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN---TKVNIIDTPGHM   78 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS---CBCCCEECCCSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC---EEEEEEECCCcH
Confidence            35899999999999999999972  11                1123344566665556666655   479999999999


Q ss_pred             chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-----
Q psy4094         520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-----  594 (663)
Q Consensus       520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-----  594 (663)
                      +|.......++-+|++|+|+|+..+-.-+....|.....        .++|+|++.||+|..........+++++     
T Consensus        79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--------~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~  150 (638)
T 3j25_A           79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--------MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAE  150 (638)
T ss_dssp             STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--------HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCeEEEEeccccccCCHHHHHHHHHHHhCCC
Confidence            999999999999999999999999888788777776655        3489999999999754331111111100     


Q ss_pred             -------------------------------------------------------HHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094         595 -------------------------------------------------------FIKEHNFSGWFETSAKDNINIDDAA  619 (663)
Q Consensus       595 -------------------------------------------------------lak~~g~i~ffEtSAKtGeNVeELF  619 (663)
                                                                             ......+.+++..||+++.||+.|+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LL  230 (638)
T 3j25_A          151 IVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLI  230 (638)
T ss_dssp             CCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHH
T ss_pred             ccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHh
Confidence                                                                   0111223567889999999999999


Q ss_pred             HHHHHHHHhh
Q psy4094         620 KTLVQKILEN  629 (663)
Q Consensus       620 e~IIr~Ile~  629 (663)
                      +.|++.+..-
T Consensus       231 d~i~~~~p~p  240 (638)
T 3j25_A          231 EVITNKFYSS  240 (638)
T ss_dssp             HHHHHSCCCS
T ss_pred             hhhhccccCc
Confidence            9998876543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=2.3e-11  Score=129.72  Aligned_cols=151  Identities=13%  Similarity=0.074  Sum_probs=96.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccchh--
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQERFG--  522 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQErfr--  522 (663)
                      ++|+|||.+|||||||+++|.+..+.....+..+++.....+.+++..              ...++||||+|+.++.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            699999999999999999999876543333322223323344454420              1469999999998753  


Q ss_pred             --hh---HHHHHhcCcEEEEEEeCCCc----------ccHHHHHHHHHHHH-----------------------------
Q psy4094         523 --NM---TRVYYKEAVGAFIVFDVTRA----------ATFDAVLKWKQDLD-----------------------------  558 (663)
Q Consensus       523 --sl---~~~~~r~ADgaILVyDVTd~----------~SFe~L~~wieeL~-----------------------------  558 (663)
                        .+   .-.+++++|++|+|+|+++.          +.++.+..|..+|.                             
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23458999999999999862          34554443333331                             


Q ss_pred             -------hhcC--------------------CCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094         559 -------AKVT--------------------LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD  611 (663)
Q Consensus       559 -------~~~~--------------------~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt  611 (663)
                             .++.                    ..-....|+|+|+|+.|..... ....+.++.++...+. .++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~-n~~~~~v~~~~~~~~~-~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFEN-NPYLDRVREIAAKEGA-VVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSS-CHHHHHHHHHHHHTTC-EEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccc-cHHHHHHHHHHHHcCC-CEEEechHH
Confidence                   0010                    0012358999999999965322 2345677888888885 799999764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.29  E-value=2.9e-12  Score=134.36  Aligned_cols=106  Identities=9%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~  586 (663)
                      +.+.||||+|...   .....+..+|++|+|+|......++.+..            ....+|+|||+||+|+.... ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------------~~~~~p~ivVlNK~Dl~~~~~~~  236 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------------GVLELADIVVVNKADGEHHKEAR  236 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------------TSGGGCSEEEEECCCGGGHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------------hHhhcCCEEEEECCCCcChhHHH
Confidence            5689999999432   23345689999999999887654433221            11236889999999985421 00


Q ss_pred             CCHHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         587 NNPAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       587 Vs~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      ...+++...+...+      ..++++|||++|.||++++++|.+.+..
T Consensus       237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            01112222222221      2579999999999999999999988755

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.28  E-value=3.2e-12  Score=125.50  Aligned_cols=113  Identities=12%  Similarity=-0.097  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCccchhhhHH------HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTR------VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~------~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.||||+|+..+..+..      .++.. +++|+++|.....................   ...++|+++|+||+|+.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID---LRLGATTIPALNKVDLL  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH---HHHTSCEEEEECCGGGC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh---cccCCCeEEEEeccccc
Confidence            4689999999987643322      23455 78888888765444333222111111000   01248999999999986


Q ss_pred             CCCCCCCHHHHHHH----------------------------HHHcCC-CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         582 KEGIANNPAKIDEF----------------------------IKEHNF-SGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       582 der~~Vs~eei~ql----------------------------ak~~g~-i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ...   ..+++.++                            +..++. .+++++||++|.|++++|++|.+.+.
T Consensus       185 ~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          185 SEE---EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             CHH---HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccc---cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            532   01111111                            233333 37899999999999999999988764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.25  E-value=2.8e-11  Score=134.80  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC---Cccccce----eeeceeE-------------------------------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS---PHYRATI----GVDFALK-------------------------------  498 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~Ti----giDf~~k-------------------------------  498 (663)
                      ...+|+|+|..|||||||+|+|++..+.   ....++.    ++.+...                               
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4579999999999999999999998763   2222221    1111000                               


Q ss_pred             -EEecCCceeEEEEEEeCCCccc-----------hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCC
Q psy4094         499 -VLSWDHETIIRLQLWDIAGQER-----------FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG  566 (663)
Q Consensus       499 -tV~vdge~~vkLqIwDTpGQEr-----------frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~  566 (663)
                       .+.+.+.....+.||||+|+..           |...+..++..+|++|+|||+++.........|+..+..       
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-------  216 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-------  216 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-------
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-------
Confidence             0000100002589999999875           667788899999999999999986666666777766652       


Q ss_pred             CCCcEEEEEeCCCCCC
Q psy4094         567 NPIPCVLLANKCDQPK  582 (663)
Q Consensus       567 ~~IPIILVGNKsDL~d  582 (663)
                      .+.|+|||+||+|+..
T Consensus       217 ~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             CGGGEEEEEECGGGSC
T ss_pred             cCCCEEEEEECCCccC
Confidence            3479999999999865

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.24  E-value=2e-11  Score=130.01  Aligned_cols=156  Identities=12%  Similarity=0.125  Sum_probs=96.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCC------ccccceeeeceeEEEecCC------------------ceeEEEEEEe
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSP------HYRATIGVDFALKVLSWDH------------------ETIIRLQLWD  514 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fse------e~~~TigiDf~~ktV~vdg------------------e~~vkLqIwD  514 (663)
                      ++|+|+|.+|||||||++++.+.....      ...+++|.      +.+.+                  .....++|||
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            589999999999999999998753211      12333332      22221                  1135799999


Q ss_pred             CCCccchh----hh---HHHHHhcCcEEEEEEeCCCc----------ccHHHHHHHHHHH--------------------
Q psy4094         515 IAGQERFG----NM---TRVYYKEAVGAFIVFDVTRA----------ATFDAVLKWKQDL--------------------  557 (663)
Q Consensus       515 TpGQErfr----sl---~~~~~r~ADgaILVyDVTd~----------~SFe~L~~wieeL--------------------  557 (663)
                      |||+.++.    .+   ...+++.||++|+|+|+++.          +.+..+..+..+|                    
T Consensus        76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~  155 (368)
T 2dby_A           76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR  155 (368)
T ss_dssp             CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc
Confidence            99987642    23   23357999999999999862          2233222211111                    


Q ss_pred             ---------------HhhcCC--------------------CCCCCCcEEEEEeCCCCC--CCCCCCCHHHHHHHHHHcC
Q psy4094         558 ---------------DAKVTL--------------------PDGNPIPCVLLANKCDQP--KEGIANNPAKIDEFIKEHN  600 (663)
Q Consensus       558 ---------------~~~~~~--------------------~~~~~IPIILVGNKsDL~--der~~Vs~eei~qlak~~g  600 (663)
                                     ..++..                    ......|+|+|+||.|..  +.......+.++.++...+
T Consensus       156 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g  235 (368)
T 2dby_A          156 ADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG  235 (368)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC
Confidence                           011100                    012247999999999842  2200234677888888888


Q ss_pred             CCeEEEEeCCCCcCHHHHHHH
Q psy4094         601 FSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~  621 (663)
                      . .++++||+...++.++++.
T Consensus       236 ~-~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          236 A-EVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             C-EEEEECHHHHHHHHTSCHH
T ss_pred             C-eEEEeechhHHHHHHhchH
Confidence            4 8999999987666655543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.20  E-value=1.1e-11  Score=129.44  Aligned_cols=105  Identities=10%  Similarity=0.032  Sum_probs=66.6

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~  586 (663)
                      +.+.||||+|...+..   .....+|++|+|+|.+....++.+..+   .         .++|+|+|+||+|+.... ..
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~---------~~~p~ivv~NK~Dl~~~~~~~  213 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L---------MEVADLIVINKDDGDNHTNVA  213 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H---------HHHCSEEEECCCCTTCHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h---------hcccCEEEEECCCCCChHHHH
Confidence            4689999999765432   356899999999999765432211110   0         126789999999986521 00


Q ss_pred             CCHHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         587 NNPAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       587 Vs~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      ...+++...+..++      ..+++++||++|.|+++++++|.+.+.
T Consensus       214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            00112333223332      347899999999999999999998775

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.09  E-value=6.6e-11  Score=121.89  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             ccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC-HHHHHHH
Q psy4094         518 QERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN-PAKIDEF  595 (663)
Q Consensus       518 QErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs-~eei~ql  595 (663)
                      ++++..+...+++++|++|+|||++++. +++.+..|+..+..       .++|+|||+||+||.+.+ .+. .+++.++
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~  137 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNEE-EKKELERWISI  137 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHH-HHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCcc-ccHHHHHHHHH
Confidence            7888888889999999999999999986 89999999987763       469999999999996532 111 3455666


Q ss_pred             HHHcCCCeEEEEeCCCCcCHHHHHHHH
Q psy4094         596 IKEHNFSGWFETSAKDNINIDDAAKTL  622 (663)
Q Consensus       596 ak~~g~i~ffEtSAKtGeNVeELFe~I  622 (663)
                      +...++ .+|++||++|.|++++|..+
T Consensus       138 ~~~~g~-~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          138 YRDAGY-DVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             HHHTTC-EEEECCTTTCTTHHHHHHHT
T ss_pred             HHHCCC-eEEEEECCCCCCHHHHHhhc
Confidence            667775 89999999999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.09  E-value=8e-11  Score=123.70  Aligned_cols=103  Identities=8%  Similarity=-0.005  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN  587 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V  587 (663)
                      +.+.||||+|....   ...+...+|++++|+|++++...+.+..   .+         ...|.|+|+||+|+....  .
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---------l~~~~ivVlNK~Dl~~~~--~  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---------IEMADLVAVTKSDGDLIV--P  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHH--H
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---------HhcCCEEEEeeecCCCch--h
Confidence            46899999995321   2445788999999999987543322211   11         135789999999985311  0


Q ss_pred             CHHHHHHHHHH---------cCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         588 NPAKIDEFIKE---------HNFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       588 s~eei~qlak~---------~g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .......+...         ....+++.+||++|.|+++++++|.+.+.
T Consensus       230 ~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            00112222211         11246899999999999999999988763

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.99  E-value=5.3e-10  Score=129.20  Aligned_cols=159  Identities=21%  Similarity=0.279  Sum_probs=98.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccce---------------------------------------------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATI---------------------------------------------  491 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Ti---------------------------------------------  491 (663)
                      ...+|+|+|..++|||||++++++..+.+......                                             
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            34599999999999999999999976621110000                                             


Q ss_pred             ----eee--ceeEEEecCCceeEEEEEEeCCCccc-------------hhhhHHHHH-hcCcEEEEEEeCCCcccHHHHH
Q psy4094         492 ----GVD--FALKVLSWDHETIIRLQLWDIAGQER-------------FGNMTRVYY-KEAVGAFIVFDVTRAATFDAVL  551 (663)
Q Consensus       492 ----giD--f~~ktV~vdge~~vkLqIwDTpGQEr-------------frsl~~~~~-r~ADgaILVyDVTd~~SFe~L~  551 (663)
                          ++.  .....+...+.  ..+.|+||||-..             +..+...|+ ..+|++|+|+|+++...-....
T Consensus       130 g~~~~is~~~i~l~I~~P~~--~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHV--LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTC--CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             CCCCcccccceEEEEecCCC--CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                000  00111111111  3478999999432             344555566 4789999999998754433333


Q ss_pred             HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HH-HHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         552 KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-FI-KEHNFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       552 ~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-la-k~~g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      .++..+.       ..+.|+|+|+||+|+.... ......... +. ..+++..++.+||++|.|+++|++.|.+.
T Consensus       208 ~ll~~L~-------~~g~pvIlVlNKiDlv~~~-~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVD-------PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHC-------TTCSSEEEEEECTTSSCTT-CCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHH-------hcCCCEEEEEeCcccCCcc-hhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            3444443       2468999999999987543 222211110 00 01233467889999999999999998873

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.97  E-value=8e-10  Score=110.95  Aligned_cols=112  Identities=7%  Similarity=-0.073  Sum_probs=73.3

Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeCC-CCCCCCCCCCHHH
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD-GNPIPCVLLANKC-DQPKEGIANNPAK  591 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~-~~~IPIILVGNKs-DL~der~~Vs~ee  591 (663)
                      |.+||..++.+|..||.++|++|||+|.+|+..++ ...-+.+|...+.... ..++|++|++||. |+..   .+...+
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~E  183 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY  183 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHH
Confidence            34589999999999999999999999999986554 2222223333222221 2679999999995 7754   356666


Q ss_pred             HHHHHHHc---CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         592 IDEFIKEH---NFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       592 i~qlak~~---g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +.+.+...   ....++.|||.+|+|+.+-++||++.+..+
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            65554332   224578999999999999999999877543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.85  E-value=3.1e-08  Score=106.03  Aligned_cols=156  Identities=13%  Similarity=0.102  Sum_probs=100.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----hhh---HHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----GNM---TRVYY  529 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----rsl---~~~~~  529 (663)
                      ...+|+|||.++||||||+|++.+........+..+.+...-.+.+.+   ..++|+||||-..-    ..+   .-..+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~---~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG---AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT---EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC---cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            347999999999999999999998765555556666677677777776   47899999995321    112   22346


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-------CCCCCCHHHHHHHHHHcCCC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-------EGIANNPAKIDEFIKEHNFS  602 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-------er~~Vs~eei~qlak~~g~i  602 (663)
                      ++||++++|+|+.++.  .....+..+|..+-  ......|.+++.||.|...       .......++++.+...+.+ 
T Consensus       148 ~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l-  222 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPL--HHKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI-  222 (376)
T ss_dssp             HHCSEEEEEEETTSHH--HHHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC-
T ss_pred             HhcCccccccccCccH--HHHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc-
Confidence            8899999999999763  23333334444321  1123467889999999632       1124566777777777654 


Q ss_pred             eEEEEeCCCCcCHHHHHH
Q psy4094         603 GWFETSAKDNINIDDAAK  620 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe  620 (663)
                      .--++-...+...+++.+
T Consensus       223 t~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          223 NSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             CSEEEEECSCCCHHHHHH
T ss_pred             cCCCeeecccCCHHHHHH
Confidence            122222234445566544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.83  E-value=3.8e-09  Score=110.62  Aligned_cols=104  Identities=10%  Similarity=0.010  Sum_probs=62.8

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN  587 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V  587 (663)
                      +.+.|+||+|...-.   ......+|.+++|+|.......+.+..++   .         .++.++|.||+|+.... ..
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~---------~~~~ivvlNK~Dl~~~~-~~  211 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F---------ELADMIAVNKADDGDGE-RR  211 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H---------HHCSEEEEECCSTTCCH-HH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h---------ccccEEEEEchhccCch-hH
Confidence            468999999964321   23457899999999987543222111111   1         13457778999974321 11


Q ss_pred             CHHHHHHHHHHc---C------CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         588 NPAKIDEFIKEH---N------FSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       588 s~eei~qlak~~---g------~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .....+.+....   .      ..+++.+||+++.|+++|++.|.+.+.
T Consensus       212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            111222332211   1      246899999999999999999988654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.79  E-value=5.4e-09  Score=112.69  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=54.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccchh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQERFG  522 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQErfr  522 (663)
                      ..++|+|||.+|||||||++++.+..+.....++.+++.....+.+.+..              ...++|||++|+.++.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            34799999999999999999999887655555666666666666665420              1359999999987654


Q ss_pred             h-------hHHHHHhcCcEEEEEEeCCCcccH
Q psy4094         523 N-------MTRVYYKEAVGAFIVFDVTRAATF  547 (663)
Q Consensus       523 s-------l~~~~~r~ADgaILVyDVTd~~SF  547 (663)
                      .       .+..+++++|++|+|+|+++..++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            3       456788999999999999875543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.75  E-value=6e-09  Score=108.88  Aligned_cols=112  Identities=7%  Similarity=-0.046  Sum_probs=76.1

Q ss_pred             eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-CCCCCcEEEEEeC-CCCCCCCCCCCHHH
Q psy4094         514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLP-DGNPIPCVLLANK-CDQPKEGIANNPAK  591 (663)
Q Consensus       514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~-~~~~IPIILVGNK-sDL~der~~Vs~ee  591 (663)
                      |.+||...+.+|..||.++|++|+|+|.+|++.++...++ .+|...+... ...++|++|++|| .|+..   .+...+
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~E  268 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY  268 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHH
Confidence            3578999999999999999999999999998765422222 1111111110 1256899999996 58865   356666


Q ss_pred             HHHHHHHc---CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         592 IDEFIKEH---NFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       592 i~qlak~~---g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +.+.+...   ....+..|||.+|+|+.|-++||++.+..+
T Consensus       269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            55544332   223578999999999999999999887543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.68  E-value=1.4e-07  Score=101.40  Aligned_cols=86  Identities=17%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccc--
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQER--  520 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQEr--  520 (663)
                      ..+|+|||.+|||||||++.+.+... .....++.+++...-.+.+.+..              ...+.+||++|...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            47999999999999999999999766 45555655556555556655410              13589999999532  


Q ss_pred             -----hhhhHHHHHhcCcEEEEEEeCCC
Q psy4094         521 -----FGNMTRVYYKEAVGAFIVFDVTR  543 (663)
Q Consensus       521 -----frsl~~~~~r~ADgaILVyDVTd  543 (663)
                           +......+++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 33345566789999999999874

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.59  E-value=1.1e-07  Score=100.78  Aligned_cols=98  Identities=17%  Similarity=0.141  Sum_probs=76.3

Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH--
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE--  594 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q--  594 (663)
                      .+++|+.++..+++.++++|+|||+++..     ..|...+.+++     .+.|+|||+||+||....  +..+.+.+  
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~--~~~~~~~~~l  122 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-----GNNKVLLVGNKADLIPKS--VKHDKVKHWM  122 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-----SSSCEEEEEECGGGSCTT--SCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-----CCCcEEEEEEChhcCCcc--cCHHHHHHHH
Confidence            46889999999999999999999999743     56777777653     268999999999997543  33344443  


Q ss_pred             --HHHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         595 --FIKEHNF--SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       595 --lak~~g~--i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                        ++...|.  ..++.+||++|.|++++++.|.+..
T Consensus       123 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          123 RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence              3566665  2689999999999999999987654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.47  E-value=3.1e-07  Score=97.32  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=75.0

Q ss_pred             CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-
Q psy4094         517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-  595 (663)
Q Consensus       517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql-  595 (663)
                      .|++|+.++..+++.++++|+|+|+++..+     .|+..+..++     .+.|+|||+||+||....  ...+.+.++ 
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-----~~~piilV~NK~DLl~~~--~~~~~~~~~l  124 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-----ADNPILLVGNKADLLPRS--VKYPKLLRWM  124 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-----TTSCEEEEEECGGGSCTT--CCHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-----CCCCEEEEEEChhcCCCc--cCHHHHHHHH
Confidence            588999999999999999999999998773     5666666543     258999999999997542  333444443 


Q ss_pred             ---HHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         596 ---IKEHNF--SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       596 ---ak~~g~--i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                         +...|.  ..++.+||++|.|++++++.|.+.+
T Consensus       125 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence               555665  3689999999999999999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.36  E-value=4.6e-07  Score=100.41  Aligned_cols=150  Identities=13%  Similarity=0.120  Sum_probs=85.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHH------hCCCC---C-ccccc-----------eeeeceeEEEe-------------cC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYV------HQFFS---P-HYRAT-----------IGVDFALKVLS-------------WD  503 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLl------g~~fs---e-e~~~T-----------igiDf~~ktV~-------------vd  503 (663)
                      ...|+|+|.+||||||+++.+.      +....   . .+.+.           .++.++.....             +.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999998      32210   0 00110           01111110000             00


Q ss_pred             -CceeEEEEEEeCCCccchh-hhHH---HH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEE
Q psy4094         504 -HETIIRLQLWDIAGQERFG-NMTR---VY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLA  575 (663)
Q Consensus       504 -ge~~vkLqIwDTpGQErfr-sl~~---~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVG  575 (663)
                       .  .+.+.||||+|..... .++.   .+  +..+|.+|+|+|.+.....   ......+...        +|+ ++|.
T Consensus       181 ~~--~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~--------~~i~gvVl  247 (504)
T 2j37_W          181 NE--NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK--------VDVASVIV  247 (504)
T ss_dssp             HT--TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH--------HCCCCEEE
T ss_pred             HC--CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh--------cCceEEEE
Confidence             1  2578999999975321 1111   11  2378999999999876431   1222333321        464 8999


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHcCC-----------------CeEEEEeCCCCcC-HHHHHHHHHHH
Q psy4094         576 NKCDQPKEGIANNPAKIDEFIKEHNF-----------------SGWFETSAKDNIN-IDDAAKTLVQK  625 (663)
Q Consensus       576 NKsDL~der~~Vs~eei~qlak~~g~-----------------i~ffEtSAKtGeN-VeELFe~IIr~  625 (663)
                      ||+|.....     ..+..+...++.                 .+.+.+|+..|.+ +.+|++++.+.
T Consensus       248 NK~D~~~~~-----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          248 TKLDGHAKG-----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ECTTSCCCC-----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             eCCccccch-----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            999986422     112233333332                 1223579999999 99999998765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.12  E-value=3e-06  Score=86.69  Aligned_cols=101  Identities=10%  Similarity=0.091  Sum_probs=70.2

Q ss_pred             EEeCCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy4094         512 LWDIAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN  588 (663)
Q Consensus       512 IwDTpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs  588 (663)
                      |-..|||. .........+.++|++|+|+|+.++.++.  .+..|+            .+.|+|+|+||+||.+..   .
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~~~---~   67 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKADAA---V   67 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSCHH---H
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCCHH---H
Confidence            44578876 55667777899999999999999987765  333332            358999999999986521   1


Q ss_pred             HHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         589 PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       589 ~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      .+...++....+. +++.+||+++.|++++++.+.+.+..
T Consensus        68 ~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           68 TQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHH
Confidence            2223334444464 79999999999999999988877654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.91  E-value=6.7e-05  Score=81.76  Aligned_cols=26  Identities=31%  Similarity=0.682  Sum_probs=23.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFF  483 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~f  483 (663)
                      .++|+|||.+|+|||||++.+++..+
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccc
Confidence            46799999999999999999998654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.87  E-value=0.00026  Score=76.70  Aligned_cols=161  Identities=17%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccce-eeec--eeEEEecCCceeEEEEEEeCCCccchhhhHHHH-----Hh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATI-GVDF--ALKVLSWDHETIIRLQLWDIAGQERFGNMTRVY-----YK  530 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Ti-giDf--~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~-----~r  530 (663)
                      ..|+|+|.+|+|||||++.+++-.....-.-.+ +.+.  ....... .. .-.+.+||++|-.........+     +.
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            379999999999999999999843221111111 1110  0011111 11 1147899999853211112222     23


Q ss_pred             cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC--C----CCCCCCHH----HHHHHHH---
Q psy4094         531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP--K----EGIANNPA----KIDEFIK---  597 (663)
Q Consensus       531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~--d----er~~Vs~e----ei~qlak---  597 (663)
                      ..+.+++ +|.... .-+++ .+...+..       .+.|+++|.||.|+.  +    .-.....+    .+++++.   
T Consensus       148 ~~~~~~~-lS~G~~-~kqrv-~la~aL~~-------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          148 EYDFFII-ISATRF-KKNDI-DIAKAISM-------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             GCSEEEE-EESSCC-CHHHH-HHHHHHHH-------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCc-cHHHH-HHHHHHHh-------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            4455554 776531 22222 22233331       248999999999962  1    00011223    3333431   


Q ss_pred             -HcC--CCeEEEEeC--CCCcCHHHHHHHHHHHHHhhhh
Q psy4094         598 -EHN--FSGWFETSA--KDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       598 -~~g--~i~ffEtSA--KtGeNVeELFe~IIr~Ile~~k  631 (663)
                       ..+  ....|.+|+  ..++|++++.+.|.+.+.+...
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~  256 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  256 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence             222  235788999  6667899999999888766554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.85  E-value=2.9e-06  Score=89.89  Aligned_cols=136  Identities=12%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NM  524 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl  524 (663)
                      .+|+|+|.+|||||||+|.+++.      .......+..+.+  ...+.++..    +.++||||-....        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~----~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG----ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT----CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC----eEEEeCCCcCcHHHHHHHHhHHH
Confidence            47999999999999999999975      2222333333322  333444443    7899999953221        12


Q ss_pred             HHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCC
Q psy4094         525 TRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS  602 (663)
Q Consensus       525 ~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i  602 (663)
                      ...++  ...+.++++++......+..+.. +    .   .....++|+++++||.|.....  ........+.+..|. 
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l----~---~l~~~~~~~~~v~~k~d~~~~~--~~~~~~~~~~~~~g~-  305 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-L----D---YIKGGRRSFVCYMANELTVHRT--KLEKADSLYANQLGE-  305 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE-E----E---EEESSSEEEEEEECTTSCEEEE--EGGGHHHHHHHHBTT-
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE-E----E---EccCCCceEEEEecCCcccccc--cHHHHHHHHHHhcCC-
Confidence            22232  66889999998753321111111 1    1   1123468999999999975422  223333444455554 


Q ss_pred             eEEEEeCCC
Q psy4094         603 GWFETSAKD  611 (663)
Q Consensus       603 ~ffEtSAKt  611 (663)
                      .++..++..
T Consensus       306 ~l~p~~~~~  314 (369)
T 3ec1_A          306 LLSPPSKRY  314 (369)
T ss_dssp             TBCSSCGGG
T ss_pred             ccCCCCchh
Confidence            445555443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.79  E-value=9e-05  Score=75.31  Aligned_cols=23  Identities=26%  Similarity=0.678  Sum_probs=21.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|+|++|+|||||++.+++
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999999986

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.69  E-value=1.8e-05  Score=83.81  Aligned_cols=126  Identities=16%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-------CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------  523 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------  523 (663)
                      .+|+++|.+|||||||+|++++....       ....+..+  .....+.+...    +.++||||-.....        
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~----~~liDtPG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE----SSLYDTPGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS----CEEEECCCBCCTTSGGGGSCHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC----eEEEeCCCcCcHHHHHHHhhHH
Confidence            47999999999999999999875211       11222222  22333444443    78999999543221        


Q ss_pred             hHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-HHHcC
Q psy4094         524 MTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-IKEHN  600 (663)
Q Consensus       524 l~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql-ak~~g  600 (663)
                      ....+  ....+.++++++......+..+.. +    .   .....++|+++|+||.|.....   ..+.+.++ .+..|
T Consensus       235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~----d---~l~~~~~~~~~v~nk~d~~~~~---~~~~~~~~~~~~~g  303 (368)
T 3h2y_A          235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-F----D---YVSGGRRAFTCHFSNRLTIHRT---KLEKADELYKNHAG  303 (368)
T ss_dssp             HHHHHSCSSCCCCEEEEECTTEEEEETTTEE-E----E---EEESSSEEEEEEECTTSCEEEE---EHHHHHHHHHHHBT
T ss_pred             HHHHhccccccCceEEEEcCCCEEEEcceEE-E----E---EecCCCceEEEEecCccccccc---cHHHHHHHHHHHhC
Confidence            11122  245678888887743221111110 1    1   1123468999999999976532   23444444 44455


Q ss_pred             C
Q psy4094         601 F  601 (663)
Q Consensus       601 ~  601 (663)
                      .
T Consensus       304 ~  304 (368)
T 3h2y_A          304 D  304 (368)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.61  E-value=0.00014  Score=79.70  Aligned_cols=86  Identities=10%  Similarity=0.035  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCccchh-----hhHH-HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG-----NMTR-VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr-----sl~~-~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|.....     .+.. .....+|.++||+|.+.....   ......+...       -.+..||.||.|..
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~-------~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA-------TPIGSIIVTKLDGS  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS-------CTTEEEEEECCSSC
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh-------CCCeEEEEECCCCc
Confidence            568999999943211     1111 123468999999999875432   2233444422       13457999999975


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ..     ...+..+....+. ++.+++.
T Consensus       253 ~~-----gG~~ls~~~~~g~-PI~fig~  274 (443)
T 3dm5_A          253 AK-----GGGALSAVAATGA-PIKFIGT  274 (443)
T ss_dssp             SS-----HHHHHHHHHTTCC-CEEEEEC
T ss_pred             cc-----ccHHHHHHHHHCC-CEEEEEc
Confidence            42     2345556666774 7777776

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.60  E-value=9.6e-05  Score=80.29  Aligned_cols=83  Identities=12%  Similarity=0.082  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCccchhh-hHH---HH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-c-EEEEEeCCC
Q psy4094         508 IRLQLWDIAGQERFGN-MTR---VY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-P-CVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQErfrs-l~~---~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-P-IILVGNKsD  579 (663)
                      +.+.|+||+|...... +..   .+  +..+|.++||+|.+....   +......+.        ..+ + ..+|.||+|
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~--------~~~~~i~gvVlnK~D  249 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK--------EAVGEIGSIIVTKLD  249 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH--------TTSCSCEEEEEECSS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh--------hcccCCeEEEEeCCC
Confidence            5689999999654221 111   11  125899999999876532   222233333        124 5 789999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         580 QPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       580 L~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      .....     ..+..+....+. ++..+
T Consensus       250 ~~~~~-----g~~l~~~~~~~~-pi~~i  271 (432)
T 2v3c_C          250 GSAKG-----GGALSAVAETKA-PIKFI  271 (432)
T ss_dssp             SCSTT-----HHHHHHHHHSSC-CEEEE
T ss_pred             Cccch-----HHHHHHHHHHCC-CEEEe
Confidence            75321     234456666664 44444

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.59  E-value=1.3e-05  Score=86.89  Aligned_cols=99  Identities=17%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc--chhhhH--------HH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE--RFGNMT--------RV  527 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--rfrsl~--------~~  527 (663)
                      .++|+|+|.+|+|||||.++|..... .....+.+++.........+. .+...+||..|++  +++..+        ..
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~-~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKT-YKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCS-CCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccC-CCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999875321 112233332221111111111 1335789999984  344444        66


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA  559 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~  559 (663)
                      ++..+++.++|||.++. .+.....|+..+..
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            77778999999999987 67777888877765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.56  E-value=4.8e-05  Score=77.01  Aligned_cols=57  Identities=21%  Similarity=0.350  Sum_probs=36.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER  520 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr  520 (663)
                      ++|+|+|.+|||||||+++|.+..... ...+.|.......+.++.    .+.||||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~----~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN----GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT----SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC----CEEEEECCCccc
Confidence            699999999999999999999866532 223333333333444443    378999999764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.44  E-value=5.8e-05  Score=76.41  Aligned_cols=94  Identities=18%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             CCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy4094         515 IAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID  593 (663)
Q Consensus       515 TpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~  593 (663)
                      .|||. .........+.++|++|+|+|+.++.+....     .+. +     . ++|+|+|+||+||.+..   ..+...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l-----l-~k~~iivlNK~DL~~~~---~~~~~~   68 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F-----S-RKETIILLNKVDIADEK---TTKKWV   68 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C-----T-TSEEEEEEECGGGSCHH---HHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h-----c-CCCcEEEEECccCCCHH---HHHHHH
Confidence            46775 3345667778999999999999988765431     011 1     1 58999999999996521   122334


Q ss_pred             HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         594 EFIKEHNFSGWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       594 qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      .+....+. ++ .+||+++.|+++++..|...
T Consensus        69 ~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           69 EFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            44555564 57 99999999999998876543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.35  E-value=0.0002  Score=73.18  Aligned_cols=56  Identities=23%  Similarity=0.317  Sum_probs=35.0

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      .++|+|+|.+|||||||+|++.+.... ....+.++.+..  .+.++.    .+.+|||||..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~----~~~l~DtpG~~  176 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK----ELELLDTPGIL  176 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT----TEEEEECCCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC----CEEEEECcCcC
Confidence            489999999999999999999986532 223333333332  233333    37899999964

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.32  E-value=0.00014  Score=79.32  Aligned_cols=90  Identities=9%  Similarity=0.022  Sum_probs=54.6

Q ss_pred             EEEEEEeCCCccc------hhhhHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         508 IRLQLWDIAGQER------FGNMTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQEr------frsl~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      +.+.|+||+|...      +.......  ....+.++||+|.......   ......+...+       .+..||.||.|
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~-------~~~gVIlTKlD  249 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS-------PIGSVIITKMD  249 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC-------SSEEEEEECGG
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc-------CCcEEEEeccc
Confidence            5678999999533      11111111  2256899999999875432   22334444321       34679999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      ...     ....+..++...+. ++.+++.  |+++
T Consensus       250 ~~a-----~~G~als~~~~~g~-Pi~fig~--Ge~v  277 (433)
T 3kl4_A          250 GTA-----KGGGALSAVVATGA-TIKFIGT--GEKI  277 (433)
T ss_dssp             GCS-----CHHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred             ccc-----cchHHHHHHHHHCC-CEEEEEC--CCCh
Confidence            753     23455666667774 7777776  5544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.19  E-value=0.00057  Score=70.51  Aligned_cols=92  Identities=10%  Similarity=0.057  Sum_probs=56.8

Q ss_pred             EEEEEEeCCCccc--hh-hhHH-----HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q psy4094         508 IRLQLWDIAGQER--FG-NMTR-----VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKC  578 (663)
Q Consensus       508 vkLqIwDTpGQEr--fr-sl~~-----~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKs  578 (663)
                      +.+.|+||+|...  .. .+..     ..+..+|.+++|+|.+...   .....+..+..        .++ ..+|.||+
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~  249 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM  249 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence            5689999999765  22 1221     2345799999999987532   22222333332        245 67899999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       579 DL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      |...     ....+..++...+. ++.+++  .|++++++
T Consensus       250 D~~~-----~~g~~~~~~~~~~~-pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          250 DGTA-----KGGGALSAVAATGA-TIKFIG--TGEKIDEL  281 (297)
T ss_dssp             GGCT-----THHHHHHHHHTTTC-CEEEEE--CSSSTTCE
T ss_pred             CCCc-----chHHHHHHHHHHCc-CEEEEe--CCCChhhc
Confidence            9743     23445667777774 677766  46666543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.84  E-value=0.0018  Score=73.16  Aligned_cols=61  Identities=15%  Similarity=0.069  Sum_probs=38.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCcc-----ccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHY-----RATIGVDFALKVLSWDHETIIRLQLWDIAGQE  519 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~-----~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE  519 (663)
                      ..+.|+|+|.+|||||||+|++++.......     ..|.|+-.....+...+  ...+.|+||+|-.
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~--~~~i~LiDTpGi~  102 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKP--GHILVLLDTEGLG  102 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSST--TCEEEEEEECCBC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCC--CceEEEecCCCcC
Confidence            4578999999999999999999986532111     12222211111111122  2468999999964

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.70  E-value=0.00049  Score=71.77  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             hhHHHHHhcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHc
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA--NNPAKIDEFIKEH  599 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~--Vs~eei~qlak~~  599 (663)
                      .+.+..+.++|.+|+|+|+.++.. ...+..++....       ..++++|||.||+||.+.. .  ...+....+....
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~-------~~~~~~vivlnK~DL~~~~-~~~~~~~~~~~~y~~~  149 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-------ANDIQPIICITKMDLIEDQ-DTEDTIQAYAEDYRNI  149 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-------TTTCEEEEEEECGGGCCCH-HHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEECCccCchh-hhHHHHHHHHHHHHhC
Confidence            344457899999999999997654 445556654444       2468999999999997642 0  0012333344445


Q ss_pred             CCCeEEEEeCCCCcCHHHHHHH
Q psy4094         600 NFSGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       600 g~i~ffEtSAKtGeNVeELFe~  621 (663)
                      |. +++.+||.++.|+++|+..
T Consensus       150 g~-~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          150 GY-DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             TC-CEEECCHHHHTTCTTTGGG
T ss_pred             CC-eEEEEecCCCCCHHHHHhh
Confidence            64 7899999998888776654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.65  E-value=0.0025  Score=71.76  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .|+|||+.|+|||||++.+.|-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998753

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.56  E-value=0.0025  Score=59.57  Aligned_cols=84  Identities=11%  Similarity=-0.037  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN  587 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V  587 (663)
                      +.+.|+|+++..  .......+..+|.+|++...+.. + ..+..+++.+.....  ...++++.+|.|++|....    
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~--~~~~~~~~vv~N~~~~~~~----  145 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQA--YSRKVEARFLITRKIEMAT----  145 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSC--GGGCCEEEEEECSBCTTEE----
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHH--hCCCCcEEEEEeccCCCch----
Confidence            568999999875  34556677789999999987654 4 677777777764311  1345778999999995321    


Q ss_pred             CHHHHHHHHHHcCC
Q psy4094         588 NPAKIDEFIKEHNF  601 (663)
Q Consensus       588 s~eei~qlak~~g~  601 (663)
                      ...++.+++..++.
T Consensus       146 ~~~~~~~~l~~~~~  159 (206)
T 4dzz_A          146 MLNVLKESIKDTGV  159 (206)
T ss_dssp             EEHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCC
Confidence            23455666666663

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.40  E-value=0.0053  Score=64.32  Aligned_cols=92  Identities=13%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             EEEEEeCCCccchhh-hH---HH--HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         509 RLQLWDIAGQERFGN-MT---RV--YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       509 kLqIwDTpGQErfrs-l~---~~--~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      .+.++|++|...... +.   ..  ..-..|-.+++.|.+...   .+...+..+...+       -.-+|+.||.|...
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~-------~it~iilTKlD~~a  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV-------KIDGIILTKLDADA  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS-------CCCEEEEECGGGCS
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc-------CCCEEEEeCcCCcc
Confidence            456899999643221 11   11  122478899999987653   3334444444321       12378889999633


Q ss_pred             CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      .     .-.+..++...+. ++.+++  +|++++++
T Consensus       283 ~-----~G~~l~~~~~~~~-pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          283 R-----GGAALSISYVIDA-PILFVG--VGQGYDDL  310 (328)
T ss_dssp             C-----CHHHHHHHHHHTC-CEEEEE--CSSSTTCE
T ss_pred             c-----hhHHHHHHHHHCC-CEEEEe--CCCCcccc
Confidence            2     2345567777774 677776  56665543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.25  E-value=0.0058  Score=65.07  Aligned_cols=82  Identities=9%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             HHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHcCCCe
Q psy4094         528 YYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI---KEHNFSG  603 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla---k~~g~i~  603 (663)
                      ...++|.+++|.+.. +. +...+..|+.....       .++++|||.||+||.+..   ..+....+.   ...|+ +
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~-------~~~~~iivlNK~DL~~~~---~~~~~~~~~~~y~~~G~-~  194 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET-------LQVEPLIVLNKIDLLDDE---GMDFVNEQMDIYRNIGY-R  194 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH-------HTCEEEEEEECGGGCCHH---HHHHHHHHHHHHHTTTC-C
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCch---hHHHHHHHHHHHHhCCC-c
Confidence            367899999987764 54 45555666554432       358889999999997532   111233333   34564 7


Q ss_pred             EEEEeCCCCcCHHHHHHH
Q psy4094         604 WFETSAKDNINIDDAAKT  621 (663)
Q Consensus       604 ffEtSAKtGeNVeELFe~  621 (663)
                      ++.+||.++.|++++...
T Consensus       195 v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          195 VLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             EEECBTTTTBTHHHHHHH
T ss_pred             EEEEecCCCcCHHHHHHh
Confidence            899999999999998764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.69  E-value=0.065  Score=58.18  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCccchh-hhHH-----HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFG-NMTR-----VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfr-sl~~-----~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL  580 (663)
                      +.+.|+||+|...+. .+..     ..+..++.+++|+|......   +...+..+...        ++ .-+|.||.|.
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~--------l~i~gvVlnK~D~  252 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA--------LPLTGVVLTKVDG  252 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH--------SCCCCEEEECTTS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc--------CCCeEEEEecCCC
Confidence            568999999965432 2221     12446899999999986532   22223333321        33 2479999997


Q ss_pred             CCCCCCCCHHHHHHHHHHcCC
Q psy4094         581 PKEGIANNPAKIDEFIKEHNF  601 (663)
Q Consensus       581 ~der~~Vs~eei~qlak~~g~  601 (663)
                      ....     ..+..+....+.
T Consensus       253 ~~~~-----g~~l~i~~~~~~  268 (433)
T 2xxa_A          253 DARG-----GAALSIRHITGK  268 (433)
T ss_dssp             SSCC-----THHHHHHHHHCC
T ss_pred             CccH-----HHHHHHHHHHCC
Confidence            4322     234455555553

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.38  E-value=0.026  Score=62.83  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|.+|+|||||++.+.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4799999999999999998874

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.33  E-value=0.03  Score=53.92  Aligned_cols=82  Identities=10%  Similarity=-0.016  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCc-cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQ-ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA  586 (663)
Q Consensus       508 vkLqIwDTpGQ-Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~  586 (663)
                      +.+.|+|+++. ...  .....+..+|.+|++...+ ..++..+..+++.+...      .+.++.+|.|+.|.....  
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~~--  136 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL------GNNRFRILLTIIPPYPSK--  136 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT------CSSSEEEEECSBCCTTSC--
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc------cCCCEEEEEEecCCccch--
Confidence            56899999986 432  3455678899999999765 45666777777766642      146788999999854311  


Q ss_pred             CCHHHHHHHHHHcCC
Q psy4094         587 NNPAKIDEFIKEHNF  601 (663)
Q Consensus       587 Vs~eei~qlak~~g~  601 (663)
                       ...++.++++.++.
T Consensus       137 -~~~~~~~~l~~~g~  150 (209)
T 3cwq_A          137 -DGDEARQLLTTAGL  150 (209)
T ss_dssp             -HHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHcCC
Confidence             24556666666653

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=95.28  E-value=0.1  Score=57.05  Aligned_cols=63  Identities=19%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC------------------CCC---Cccccceeeecee--EEEecCCceeEEEEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ------------------FFS---PHYRATIGVDFAL--KVLSWDHETIIRLQLW  513 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~------------------~fs---ee~~~TigiDf~~--ktV~vdge~~vkLqIw  513 (663)
                      ...-|.|+|..++|||+|+|+|++.                  .|.   .....|.|+-...  ..+....+..+.+.+.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll  145 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence            4567999999999999999999863                  232   1223344443222  1222222335789999


Q ss_pred             eCCCcc
Q psy4094         514 DIAGQE  519 (663)
Q Consensus       514 DTpGQE  519 (663)
                      ||+|..
T Consensus       146 DTeG~~  151 (447)
T 3q5d_A          146 DTQGTF  151 (447)
T ss_dssp             EEECCC
T ss_pred             cCCccc
Confidence            999964

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.18  E-value=0.029  Score=60.99  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=56.2

Q ss_pred             EEEEEEeCCCccchh-hhHH-----HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG-NMTR-----VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr-sl~~-----~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|..... .+..     ..+-.+|.+|||+|....   ..+......+...+       ....+|.||.|..
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l-------~i~GVIlTKlD~~  250 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV-------GVTGLVLTKLDGD  250 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT-------CCCEEEEESGGGC
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC-------CceEEEEeCcCCc
Confidence            568999999964321 1111     112358999999998743   22223333343221       1245788999964


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH----HHHHHHHHHh
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA----AKTLVQKILE  628 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL----Fe~IIr~Ile  628 (663)
                      ..     ...+..++...+. ++.++..  |+.++++    -+.+++.++.
T Consensus       251 ~~-----~g~alsi~~~~g~-PI~flg~--Ge~~~dl~~f~~~~~a~~ilg  293 (425)
T 2ffh_A          251 AR-----GGAALSARHVTGK-PIYFAGV--SEKPEGLEPFYPERLAGRILG  293 (425)
T ss_dssp             SS-----CHHHHHHHHHHCC-CEEEEEC--SSSGGGEEECCHHHHHHHHHT
T ss_pred             cc-----HHHHHHHHHHHCC-CEEEEeC--CCChhhccccCHHHHHHHHhc
Confidence            32     2345556667774 6666553  4444433    2445555543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.13  E-value=0.069  Score=54.84  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCccchhh-hHH---HHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFGN-MTR---VYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfrs-l~~---~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.|+||+|...... +..   ..+.  ..+.+++|+|.+..  ...+..|...+.       .-++ .-+|.||.|..
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~-------~l~~-~giVltk~D~~  252 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS-------SVPV-NQYIFTKIDET  252 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS-------SSCC-CEEEEECTTTC
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh-------cCCC-CEEEEeCCCcc
Confidence            4689999999653321 111   2222  36788899988742  344444433222       1112 24667999975


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      ...     ..+..++...+. ++..+.
T Consensus       253 ~~~-----g~~~~~~~~~~~-pi~~i~  273 (296)
T 2px0_A          253 TSL-----GSVFNILAESKI-GVGFMT  273 (296)
T ss_dssp             SCC-----HHHHHHHHTCSC-CCSEEC
T ss_pred             cch-----hHHHHHHHHHCc-CEEEEE
Confidence            422     356677777774 444443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.69  E-value=0.061  Score=55.99  Aligned_cols=102  Identities=15%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             EEEEEEeCCCccchh-hhHH------HHH-----hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEE
Q psy4094         508 IRLQLWDIAGQERFG-NMTR------VYY-----KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLL  574 (663)
Q Consensus       508 vkLqIwDTpGQErfr-sl~~------~~~-----r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILV  574 (663)
                      +.+.|+||+|..... .++.      ..+     ..+|.+++|+|.+..  .+.+... ..+..        ..+ .-+|
T Consensus       192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~-~~~~~--------~~~i~GvV  260 (320)
T 1zu4_A          192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA-EEFSK--------VADVSGII  260 (320)
T ss_dssp             CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH-HHHTT--------TSCCCEEE
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH-HHHhh--------cCCCcEEE
Confidence            578999999965432 1111      111     237899999998743  3333222 22221        122 3488


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH----HHHHHHHHh
Q psy4094         575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA----KTLVQKILE  628 (663)
Q Consensus       575 GNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF----e~IIr~Ile  628 (663)
                      .||.|....     ...+..++..++. ++.++.  .|++++++-    +++++.++.
T Consensus       261 ltk~d~~~~-----~g~~~~~~~~~~~-Pi~~i~--~Ge~~~dl~~~~~~~~~~~ll~  310 (320)
T 1zu4_A          261 LTKMDSTSK-----GGIGLAIKELLNI-PIKMIG--VGEKVDDLLAFDIDQYIVHLSS  310 (320)
T ss_dssp             EECGGGCSC-----TTHHHHHHHHHCC-CEEEEE--CSSSTTCEEECCHHHHHHHHTG
T ss_pred             EeCCCCCCc-----hhHHHHHHHHHCc-CEEEEe--CCCCccccccCCHHHHHHHHhC
Confidence            999996432     1356677777774 665554  344444332    345555543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.31  E-value=0.082  Score=48.52  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|+..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.94  E-value=0.031  Score=53.13  Aligned_cols=22  Identities=45%  Similarity=0.868  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      +|+|+|++|+|||||++.+++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999988763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.69  E-value=0.034  Score=51.98  Aligned_cols=22  Identities=18%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|+|++|+|||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999863

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=93.65  E-value=0.74  Score=43.69  Aligned_cols=64  Identities=13%  Similarity=0.010  Sum_probs=44.7

Q ss_pred             eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      .+.+.|+|+++....  .....+..+|.+|++...+ ..++..+..+++.+...    +  -..+.+|.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~----~--~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL----G--IKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH----T--CSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc----C--CccEEEEEeCCC
Confidence            367899999975433  4556678899999999764 56666666666544432    1  145789999998

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=93.50  E-value=0.039  Score=51.52  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|+|.+|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.50  E-value=0.037  Score=52.77  Aligned_cols=21  Identities=29%  Similarity=0.681  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|++|+|||||++.+++
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.34  E-value=0.045  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -.|+|+|.+|+|||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36999999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=93.20  E-value=0.083  Score=48.83  Aligned_cols=21  Identities=38%  Similarity=0.494  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.06  E-value=0.047  Score=52.02  Aligned_cols=22  Identities=14%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=92.57  E-value=0.06  Score=52.21  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|++|+|||||++.+++.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=92.53  E-value=0.052  Score=50.51  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl  479 (663)
                      -++|+|.+|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            58999999999999999754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.51  E-value=0.082  Score=56.29  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFF  483 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~f  483 (663)
                      .++|+|.+|||||||++.+++...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999997543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.41  E-value=0.094  Score=47.99  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=92.39  E-value=0.067  Score=52.56  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|+|++|+|||||++.+++.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999874

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.18  E-value=0.075  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|+|++|+|||||++.++..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=92.14  E-value=0.077  Score=49.43  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      ..|+|+|.+|+|||||++.+.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            369999999999999999988753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=92.13  E-value=0.076  Score=49.74  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .|+|+|+.|+|||||++.+++..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            68999999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=91.99  E-value=0.082  Score=47.08  Aligned_cols=19  Identities=37%  Similarity=0.553  Sum_probs=18.0

Q ss_pred             EEEEEeCCCCCHHHHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRY  478 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrL  478 (663)
                      -|+|+|.+|+||||+++.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999988

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=91.97  E-value=0.094  Score=49.97  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.+.+
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=91.87  E-value=0.09  Score=47.79  Aligned_cols=22  Identities=32%  Similarity=0.691  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=91.81  E-value=0.11  Score=49.12  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|..|+|||||++.+.+
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=91.80  E-value=0.089  Score=49.62  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+++.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=91.76  E-value=0.096  Score=47.11  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+||||+++.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=91.75  E-value=0.089  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|.+|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            588999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.57  E-value=0.094  Score=50.72  Aligned_cols=21  Identities=29%  Similarity=0.692  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|+|++||||+||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999853

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=91.51  E-value=0.099  Score=49.58  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .-|+|+|.+|||||||++.+...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=91.49  E-value=0.1  Score=47.31  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=91.40  E-value=0.1  Score=49.25  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=91.38  E-value=0.1  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|+|++|||||||++.++..
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            6899999999999999999863

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.37  E-value=0.65  Score=46.88  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||+|++.+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=91.28  E-value=0.092  Score=51.97  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999888763

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.24  E-value=0.12  Score=48.40  Aligned_cols=22  Identities=23%  Similarity=0.564  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|..|+|||||++.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=91.24  E-value=0.1  Score=51.25  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999888763

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.17  E-value=0.13  Score=47.67  Aligned_cols=21  Identities=38%  Similarity=0.656  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=91.15  E-value=0.12  Score=46.27  Aligned_cols=21  Identities=38%  Similarity=0.673  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=91.07  E-value=0.12  Score=50.43  Aligned_cols=21  Identities=24%  Similarity=0.618  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLl  479 (663)
                      ..|+|+|.+|+|||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999988

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=91.07  E-value=0.1  Score=48.19  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|+|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998876

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=91.07  E-value=0.47  Score=42.68  Aligned_cols=22  Identities=14%  Similarity=0.363  Sum_probs=18.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|++|+|||+|++.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999976643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=91.05  E-value=0.14  Score=46.89  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+||||+++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=91.04  E-value=0.12  Score=48.84  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+|+||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998853

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=90.98  E-value=0.58  Score=46.46  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|++|+|||+|++.+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999986654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.92  E-value=0.51  Score=47.80  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|++|+|||||++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=90.90  E-value=0.12  Score=48.52  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=90.87  E-value=0.13  Score=48.78  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||+++.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=90.84  E-value=0.18  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.178  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|.+|+||||+++.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=90.83  E-value=0.077  Score=55.25  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|.+|||||||++.+++.
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            7999999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=90.79  E-value=0.12  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=90.64  E-value=0.14  Score=46.79  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|.+|+||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=90.59  E-value=0.12  Score=52.10  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=90.54  E-value=0.15  Score=48.07  Aligned_cols=22  Identities=36%  Similarity=0.682  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|+|.+|+||||+++.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=90.45  E-value=0.13  Score=49.54  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999998876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=90.41  E-value=0.12  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=90.37  E-value=0.16  Score=48.25  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.30  E-value=0.17  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|+|..|+||||+++.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=90.29  E-value=0.17  Score=46.30  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|.+|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=90.25  E-value=0.14  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988763

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=90.24  E-value=0.13  Score=50.44  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=90.23  E-value=0.14  Score=50.95  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=90.18  E-value=0.14  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.679  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999888763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=90.16  E-value=0.14  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999888764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=90.16  E-value=0.19  Score=47.14  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|+|.+|+||||+++.|..
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=90.15  E-value=0.13  Score=50.87  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999888764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=90.09  E-value=0.15  Score=51.43  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=90.08  E-value=0.15  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=90.07  E-value=0.1  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=14.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHH-hC
Q psy4094         460 KILVIGELGAGKTSIIKRYV-HQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl-g~  481 (663)
                      -|+|+|..|+|||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998 54

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=90.02  E-value=0.16  Score=47.97  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|.+|+|||||++.+.+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=90.02  E-value=0.21  Score=45.92  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=89.99  E-value=0.14  Score=52.22  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999988763

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=89.94  E-value=0.14  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.538  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=89.93  E-value=0.17  Score=47.52  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|++|+|||||+..+++
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999884

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=89.92  E-value=0.18  Score=46.37  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=89.90  E-value=0.13  Score=50.30  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=89.90  E-value=0.21  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=89.81  E-value=0.83  Score=41.02  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ..|+|.|++|+|||+|++.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            36999999999999999888653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.80  E-value=0.24  Score=49.91  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      ++|.|++|+|||+|++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=89.77  E-value=0.15  Score=51.61  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            6899999999999999888764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=89.74  E-value=0.15  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999988764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=89.64  E-value=0.16  Score=51.22  Aligned_cols=22  Identities=32%  Similarity=0.381  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=89.62  E-value=0.17  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=89.53  E-value=0.2  Score=47.68  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+|+||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=89.48  E-value=0.17  Score=51.50  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999988764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=89.45  E-value=0.17  Score=51.16  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+++-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999888764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=89.44  E-value=0.16  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999888763

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=89.37  E-value=0.23  Score=46.22  Aligned_cols=22  Identities=27%  Similarity=0.184  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|.+|+||||+++.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=89.35  E-value=0.23  Score=45.41  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=89.31  E-value=0.16  Score=52.93  Aligned_cols=23  Identities=13%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -+++|+|.+|+|||||++.+.+-
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=89.29  E-value=0.16  Score=45.54  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|.|++|+|||+|++.+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=89.29  E-value=0.31  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            67999999999999999988763

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=89.27  E-value=0.17  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=89.09  E-value=0.82  Score=45.49  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGIA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~~  586 (663)
                      +.+.|+|+++....  .....+..+|.+|++...+ ..++..+..++..+...... ...+++++ +|.|+.|....   
T Consensus       155 yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~n~~~~~~~---  227 (298)
T 2oze_A          155 YDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQ-FNPGLDMIGFVPYLVDTDSA---  227 (298)
T ss_dssp             CSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHH-HCTTCEEEEEEEEESCTTCH---
T ss_pred             CCEEEEECCCCccH--HHHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEEEECCCcH---
Confidence            67899999986533  2334455699999999765 45566665555544432110 12356654 89999985331   


Q ss_pred             CCHHHHHHHHHHcC
Q psy4094         587 NNPAKIDEFIKEHN  600 (663)
Q Consensus       587 Vs~eei~qlak~~g  600 (663)
                      ...+.+.++...++
T Consensus       228 ~~~~~~~~~~~~~~  241 (298)
T 2oze_A          228 TIKSNLEELYKQHK  241 (298)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            12334455555554

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=89.03  E-value=0.23  Score=47.34  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|+|.+|+||||+++.+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=89.01  E-value=0.2  Score=50.38  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|+.|+|||||++.+++
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            699999999999999998876

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=88.89  E-value=4.2  Score=44.75  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=39.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHH---h---------------CCCC---CccccceeeeceeEE--EecCCceeEEEEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYV---H---------------QFFS---PHYRATIGVDFALKV--LSWDHETIIRLQLW  513 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLl---g---------------~~fs---ee~~~TigiDf~~kt--V~vdge~~vkLqIw  513 (663)
                      ...=|.|+|..++|||+|+|.|+   .               ..|.   ....-|.|+-.....  +....+..+.+.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            45667799999999999999554   1               2232   123345565443322  33333336789999


Q ss_pred             eCCCcc
Q psy4094         514 DIAGQE  519 (663)
Q Consensus       514 DTpGQE  519 (663)
                      ||-|..
T Consensus       146 DTEG~~  151 (457)
T 4ido_A          146 DTQGTF  151 (457)
T ss_dssp             EECCBT
T ss_pred             eccCCC
Confidence            999954

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=88.89  E-value=0.21  Score=51.72  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|.+|+|||||++.+.+
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHh
Confidence            5799999999999999998876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=88.86  E-value=0.24  Score=48.39  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|..|+|||||++.+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=88.80  E-value=0.22  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|++|+|||+|++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999998863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.74  E-value=0.37  Score=49.20  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      ++|.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=88.73  E-value=0.18  Score=51.37  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|.+|+|||||++.+.+.
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCcHHHHHHHhccc
Confidence            6899999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=88.67  E-value=0.26  Score=44.45  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|.|.+|+||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=88.66  E-value=0.35  Score=45.23  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.|..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=88.61  E-value=0.26  Score=47.37  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=88.59  E-value=0.22  Score=50.37  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .++|+|++|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=88.54  E-value=0.33  Score=44.25  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=88.53  E-value=0.22  Score=50.98  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl  479 (663)
                      .++|+|.+|||||||++.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999998

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=88.51  E-value=0.25  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .-|+|+|..|+|||||+++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            36899999999999999999863

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=88.50  E-value=0.24  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|.+|+|||||+..++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=88.49  E-value=0.32  Score=45.06  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .+.|+|+|..|+||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999998764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=88.45  E-value=0.26  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|.|++|+|||+|++.+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=88.45  E-value=0.24  Score=51.55  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|++|+|||||++.+++
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            799999999999999998876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=88.35  E-value=0.25  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||+..++..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=88.34  E-value=0.27  Score=45.64  Aligned_cols=23  Identities=22%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ..|+|+|..|+||||+++.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999988764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=88.28  E-value=0.28  Score=44.88  Aligned_cols=21  Identities=33%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|..|+||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=88.27  E-value=0.3  Score=44.93  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=88.24  E-value=0.24  Score=45.45  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=88.20  E-value=0.24  Score=50.83  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=88.20  E-value=0.3  Score=47.98  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+.|+|+|.+|+||||++.+|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=88.16  E-value=0.26  Score=45.27  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=88.15  E-value=0.3  Score=45.10  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=88.03  E-value=0.26  Score=49.25  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|.+|+|||||+..+++.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5899999999999999998763

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=88.01  E-value=0.49  Score=49.18  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|..|+|||||++.+++-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999988764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=87.90  E-value=0.33  Score=45.39  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|.+|+||||+++.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=87.89  E-value=0.3  Score=45.55  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ..|+|+|.+|+||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=87.89  E-value=0.32  Score=46.56  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|+|.+|+||||+++.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=87.82  E-value=0.37  Score=45.66  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.+.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=87.75  E-value=0.27  Score=49.54  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|+|++|+|||+|++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=87.66  E-value=0.4  Score=44.38  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=87.63  E-value=0.14  Score=48.09  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|.+|+|||||++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=87.61  E-value=0.32  Score=46.96  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=87.58  E-value=0.31  Score=47.50  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|++|+||+|++.++..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=87.55  E-value=0.17  Score=48.01  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+|||||++.+++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=87.47  E-value=0.29  Score=50.40  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      --|+|+|..|+|||||+..+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=87.46  E-value=0.28  Score=50.61  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+|||||++.+.+
T Consensus       104 vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            799999999999999998873

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=87.43  E-value=0.29  Score=52.12  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            5899999999999999988863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=87.41  E-value=0.31  Score=46.53  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=87.37  E-value=0.33  Score=44.55  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=87.26  E-value=0.22  Score=45.71  Aligned_cols=22  Identities=45%  Similarity=0.693  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=87.25  E-value=0.31  Score=48.37  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999998864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=87.24  E-value=0.47  Score=48.11  Aligned_cols=21  Identities=38%  Similarity=0.494  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|.|++|+|||+|++.+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=87.20  E-value=0.4  Score=47.49  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|.|++|+|||++++.+...
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=87.13  E-value=0.41  Score=48.86  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|..|+|||||++.+.+
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=86.98  E-value=0.35  Score=43.75  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|.+|+||||+++.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=86.88  E-value=0.37  Score=44.97  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=86.84  E-value=0.32  Score=51.65  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999988864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=86.77  E-value=0.35  Score=47.11  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|++|+|||+|++.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            599999999999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=86.71  E-value=0.33  Score=51.61  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            5899999999999999988863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=86.71  E-value=0.32  Score=51.60  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            5899999999999999988863

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=86.63  E-value=0.44  Score=48.77  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..+.|+|+|.+|+|||||++.+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=86.62  E-value=0.91  Score=47.63  Aligned_cols=22  Identities=41%  Similarity=0.750  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|..|+|||||++.+++-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999998874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=86.59  E-value=0.44  Score=49.85  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..+-|+|+|.+|+|||||++.+.+
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=86.56  E-value=0.26  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.726  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .-|+|+|..|+|||||++.+.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            57999999999999999887763

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=86.55  E-value=0.33  Score=51.66  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            5899999999999999988864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=86.55  E-value=1.6  Score=44.78  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -.|+|.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            36999999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=86.52  E-value=0.34  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998763

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=86.47  E-value=0.42  Score=48.53  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|.+|+|||||+..+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=86.43  E-value=0.42  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=86.40  E-value=0.39  Score=44.16  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|..|+||||+++.+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=86.39  E-value=0.35  Score=51.91  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            5899999999999999988863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=86.36  E-value=0.35  Score=51.65  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            5899999999999999888763

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=86.29  E-value=0.36  Score=51.53  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5899999999999999988763

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=86.19  E-value=0.38  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|.+|+|||||...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=86.18  E-value=0.4  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|++|+|||+|+.+++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=86.18  E-value=0.4  Score=44.12  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=86.17  E-value=0.41  Score=50.39  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=20.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      +++|+|++|+|||||++.+++.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            8999999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=86.11  E-value=0.24  Score=51.47  Aligned_cols=21  Identities=29%  Similarity=0.642  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|..|+|||||++.+++
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            799999999999999988775

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=86.11  E-value=1.7  Score=46.67  Aligned_cols=22  Identities=32%  Similarity=0.532  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||+|++.+...
T Consensus       169 ~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          169 GILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998864

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=85.99  E-value=0.79  Score=48.62  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|.|.+|+|||+|+..++.
T Consensus        76 li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            478899999999999998874

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=85.93  E-value=2.4  Score=44.28  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      ..|+|.|++|+|||+|++.+...
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999998653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=85.90  E-value=0.28  Score=44.76  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=15.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|.+|+||||+++.+..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=85.78  E-value=0.42  Score=47.55  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|++|+|||||+..+++
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999885

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=85.72  E-value=0.45  Score=47.05  Aligned_cols=21  Identities=38%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLl  479 (663)
                      ..|+|+|..|+|||||++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999887

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=85.67  E-value=0.43  Score=48.10  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=85.61  E-value=0.42  Score=47.38  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=85.61  E-value=0.55  Score=44.57  Aligned_cols=22  Identities=23%  Similarity=0.697  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|.|..|+||||+++.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=85.31  E-value=0.4  Score=47.28  Aligned_cols=22  Identities=41%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+|||||++.+..
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=85.26  E-value=0.52  Score=42.79  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|.|..|+||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=85.24  E-value=0.43  Score=50.41  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|+.|+|||||++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999998876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=85.22  E-value=0.46  Score=45.80  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|.|++|+|||+|++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=85.18  E-value=0.44  Score=51.15  Aligned_cols=21  Identities=19%  Similarity=0.711  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .++|+|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            689999999999999988876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=85.04  E-value=0.54  Score=46.10  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..+.|+|.|..|+||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=85.04  E-value=0.3  Score=51.60  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            5899999999999999988864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=85.00  E-value=0.46  Score=50.47  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      --|+|+|..|+|||||+..+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4799999999999999998874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=84.98  E-value=0.48  Score=45.01  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|.+|+||||+++.+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=84.76  E-value=0.48  Score=47.00  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -.|+|.|++|+|||+|++.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            37999999999999999998763

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=84.73  E-value=0.52  Score=45.04  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|+|..|+|||||+.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=84.72  E-value=0.47  Score=46.61  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||+|++.+...
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            6999999999999999998753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=84.71  E-value=3.5  Score=41.32  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=16.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            444455999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=84.70  E-value=0.41  Score=49.19  Aligned_cols=22  Identities=36%  Similarity=0.687  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|..|+|||||++.+++.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4789999999999999999975

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=84.60  E-value=0.5  Score=49.94  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|..|+|||||++.+++
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=84.37  E-value=0.49  Score=51.71  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|..|+|||||++.+++
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            699999999999999998876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=84.25  E-value=0.76  Score=46.34  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+.|+|.|..|+||||+++.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998863

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=83.99  E-value=0.56  Score=46.68  Aligned_cols=22  Identities=41%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|.|..|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=83.83  E-value=0.29  Score=51.72  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999988864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=83.83  E-value=0.56  Score=46.66  Aligned_cols=22  Identities=23%  Similarity=0.572  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|.|..|+|||+|++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5899999999999999999864

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=83.77  E-value=4.1  Score=42.07  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGIA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~~  586 (663)
                      +.+.++|+++......+ ...+..||.+|++.... ..++..+...+..+...   ....++++. +|+|.++.      
T Consensus       164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~---~~~~~~~l~GiI~n~~~~------  232 (314)
T 3fwy_A          164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK---SKNYKVRLAGCVANRSRA------  232 (314)
T ss_dssp             CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT---TTTCCCEEEEEEEESCSC------
T ss_pred             CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHH---hccCCCceEEEEEcCCCc------
Confidence            45778888765433322 12356689998888543 45566666666655532   122345543 67787653      


Q ss_pred             CCHHHHHHHHHHcCC
Q psy4094         587 NNPAKIDEFIKEHNF  601 (663)
Q Consensus       587 Vs~eei~qlak~~g~  601 (663)
                        ..++.++++.++.
T Consensus       233 --~~~v~~~a~~~~~  245 (314)
T 3fwy_A          233 --TDEVDRFCKETNF  245 (314)
T ss_dssp             --CHHHHHHHHHHTC
T ss_pred             --hhHHHHHHHHhCC
Confidence              2455677777764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=83.58  E-value=0.61  Score=50.61  Aligned_cols=22  Identities=14%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      +++|+|++|+|||||++.+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            8999999999999999998875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=83.42  E-value=0.6  Score=46.47  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||+++++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=83.37  E-value=0.6  Score=47.41  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998763

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=83.36  E-value=0.61  Score=45.89  Aligned_cols=21  Identities=48%  Similarity=0.789  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        52 ~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=83.35  E-value=0.58  Score=47.25  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        39 ~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=83.26  E-value=0.91  Score=44.47  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..-|+|.|.+|+||||+++.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.11  E-value=1.1  Score=48.79  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      --|+|.|++|+|||.|++.+.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            37999999999999999998763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=83.10  E-value=0.73  Score=44.61  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=20.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ....|+|+|..|+||||+++.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=83.05  E-value=0.66  Score=45.80  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|++|+||+|++.++..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366789999999999988864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=83.05  E-value=0.63  Score=51.67  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999998874

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.93  E-value=2.2  Score=46.21  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|.|++|+|||.|++.+.+
T Consensus       184 GvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHH
T ss_pred             ceEEeCCCCCCHHHHHHHHHH
Confidence            599999999999999999876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.62  E-value=2.2  Score=46.39  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|.|++|+|||+|++.+.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999876

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=82.55  E-value=0.61  Score=46.82  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|+|.+|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=82.48  E-value=0.65  Score=50.19  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -|+|+|+.|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998863

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=82.42  E-value=0.67  Score=46.85  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||+|++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            6999999999999999988763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.18  E-value=1.4  Score=48.30  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      --|+|.|++|+|||.|++.+.+.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            36999999999999999998763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=81.94  E-value=0.72  Score=45.69  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -.|+|+|++|+|||+|++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=81.93  E-value=0.68  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      .|+|+|..|+|||||++.+++-.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999988643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=81.55  E-value=0.72  Score=51.29  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            7999999999999999888763

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=81.50  E-value=0.66  Score=46.82  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=81.48  E-value=0.85  Score=41.82  Aligned_cols=19  Identities=37%  Similarity=0.726  Sum_probs=17.1

Q ss_pred             EEEEeCCCCCHHHHHHHHH
Q psy4094         461 ILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLl  479 (663)
                      .+|+|+.|+|||+|+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=81.39  E-value=0.83  Score=46.20  Aligned_cols=22  Identities=18%  Similarity=0.181  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|.|++|+|||+|++.+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678889999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=81.33  E-value=1.1  Score=44.06  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ...|+|.|++|+|||+|++.+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999998876

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=81.13  E-value=0.77  Score=50.78  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=81.06  E-value=0.7  Score=51.43  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|||++|+|||||++.+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999988864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=80.90  E-value=0.85  Score=46.43  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        72 ~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=80.86  E-value=0.83  Score=47.75  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -+.|+|++|+|||||+..+++.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=80.84  E-value=0.8  Score=50.93  Aligned_cols=22  Identities=23%  Similarity=0.564  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7999999999999999988763

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=80.46  E-value=0.93  Score=43.02  Aligned_cols=20  Identities=30%  Similarity=0.723  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl  479 (663)
                      -++|.|.+|+|||+|+.+|+
T Consensus        32 l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            58899999999999999876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=80.44  E-value=0.91  Score=46.17  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        47 ~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=80.22  E-value=1  Score=41.68  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|..|+||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=80.21  E-value=1.2  Score=42.83  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..+.|+|.|..|+||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	663
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	9e-38
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-37
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-37
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-35
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	9e-35
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-34
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-33
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-33
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-32
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-32
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-31
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-31
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-30
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-30
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-30
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-29
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-29
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-28
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-28
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-27
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-27
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-26
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-25
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	9e-25
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-24
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-24
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-24
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-24
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-23
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-23
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-23
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-23
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-22
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-22
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-22
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-21
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-21
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-20
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-19
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-19
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-19
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-19
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-18
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-18
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	8e-18
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-16
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-16
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-14
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	7e-14
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-07
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	5e-07
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-05
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	7e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	8e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	5e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.002
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.003

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (344), Expect = 4e-38
 Identities = 54/172 (31%), Positives = 91/172 (52%), Gaps = 8/172 (4%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + KIL+IG+ G GK+ ++ R+V   F+P +  TIG+DF +K +  + + + +LQ+WD AG
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDTAG 60

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF  +T  YY+ A+G  +V+D+T   TF  +   +          D   +  V   NK
Sbjct: 61  QERFRTITTAYYRGAMGIILVYDITDERTFTNI--KQWFKTVNEHANDEAQLLLV--GNK 116

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
            D     +  +  +     KE     + E+SAK++ N+++   TL + I E 
Sbjct: 117 SDMETRVVTADQGE--ALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (342), Expect = 9e-38
 Identities = 53/177 (29%), Positives = 99/177 (55%), Gaps = 8/177 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG+ G GKT ++ R+    F+  + +TIG+DF ++ +  D +  I+LQ+WD 
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR-IKLQIWDT 62

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ A+G  +V+D+T   +FD +  W ++++        +     ++ 
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE-----EHASADVEKMIL 117

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN-DK 631
                  +    +  + ++   ++    + ETSAK NIN+++A  TL + I    DK
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKMDK 173

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (340), Expect = 2e-37
 Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 7/173 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++++KIL+IG    GKTS + RY    F+P + +T+G+DF +K +  + + I +LQ+WD 
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 61

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ A+G  +++D+T   +F+AV  W   +              VLL 
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK-----TYSWDNAQVLLV 116

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
                 ++    +  +  +      F  +FE SAKDNIN+    + LV  I E
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-37
 Identities = 54/176 (30%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+KI++IG  G GKT +++R+    F P   ATIGVDF +K +  + E  ++LQ+WD 
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK-VKLQIWDT 61

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF ++T+ YY+ A    + +D+T   +F  + +W ++++   +    N +  VL+ 
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVG 117

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
           N      E    +  + +EF +  +   + ETSAK++ N++     L  +++   +
Sbjct: 118 N-KIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISEAR 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 4e-35
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 7/174 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           +FL+K LVIG  G GK+ ++ +++ + F      TIGV+F  K+++   +  ++LQ+WD 
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY-VKLQIWDT 61

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF ++TR YY+ A GA +V+D+T   T++A+  W  D          +    ++L 
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR-----MLASQNIVIILC 116

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
                          +   F +E+    + ETSA    N+++A     +KIL  
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNK 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (325), Expect = 4e-35
 Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 20/206 (9%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+L+IG  G GK+ ++ R+    ++  Y +TIGVDF +K +  D +T ++LQ+WD 
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT-VKLQIWDT 62

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQERF  +T  YY+ + G  IV+DVT   +F+ V  W Q++D        + +  +L+ 
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR----YATSTVLKLLVG 118

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
           NKCD            + +   + N   + ETSA D+ N++DA  T+ ++I E+   Q  
Sbjct: 119 NKCDLKD--KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ-- 174

Query: 636 GDSHATSEAVFSLNRNSQETKNGRNC 661
                      +LN  +Q+ ++  N 
Sbjct: 175 -----------NLNETTQKKEDKGNV 189

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 9e-35
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 14/183 (7%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE---------T 506
           ++L K+L +G+ G GKT+ + RY    F+P +  T+G+DF  K + ++ +          
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
            + LQLWD AGQERF ++T  ++++A+G  ++FD+T   +F  V  W   L A       
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN----AY 118

Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
              P ++L        +    N  +  E   ++    +FETSA    N++ A +TL+  I
Sbjct: 119 CENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLI 177

Query: 627 LEN 629
           ++ 
Sbjct: 178 MKR 180

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 2e-34
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 8/175 (4%)

Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVH-QFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
           D  +  +K++++G+ G GKT ++ R+    F +  + +T+G+DF  KVL  D   + +LQ
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV-KLQ 59

Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
           +WD AGQERF ++T  YY++A    +++DVT  A+FD +  W  +               
Sbjct: 60  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-----IHEYAQHDVA 114

Query: 572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           ++L                  ++  KE+    + ETSAK  +N+D A   + +++
Sbjct: 115 LMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKEL 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-33
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 7/170 (4%)

Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +++K ++IG++G GK+ ++ ++  + F      TIGV+F  +++    +  I+LQ+WD A
Sbjct: 3   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK-IKLQIWDTA 61

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQERF  +TR YY+ A GA +V+D+TR +T++ +  W  D               +L+ N
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN----LTNPNTVIILIGN 117

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D   +       +  +F +E+    + E SAK   N++DA     +KI
Sbjct: 118 KADLEAQRD-VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKI 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-33
 Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 7/171 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            KIL+IGE G GK+S++ R+    F P   ATIGVDF +K +S D     +L +WD AGQ
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK-AKLAIWDTAGQ 66

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF  +T  YY+ A G  +V+DVTR  TF    K    L+   T    N I  +L+ NK 
Sbjct: 67  ERFRTLTPSYYRGAQGVILVYDVTRRDTFV---KLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D+    +  N  +  +F ++H+   + E SAK    +  A + LV+KI++ 
Sbjct: 124 DKENREVDRN--EGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQT 171

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-32
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 3/174 (1%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           +  L+K++++G+ G GK+S++ RYV   F      TIGV+F  K         + +Q+WD
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKD-LEVDGHFVTMQIWD 61

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
            AGQERF ++   +Y+ +    + F V  + +F  +  WK++      + +    P V+L
Sbjct: 62  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 121

Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            NK D  +     +  +   + +++    +FETSAKD  N+  A +  V+++L 
Sbjct: 122 GNKIDISERQ--VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 5e-32
 Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
           ++L+K+++IG+ G GK++++ R+    F+   ++TIGV+FA + +  D +  I+ Q+WD 
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-TIKAQIWDT 60

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
           AGQER+  +T  YY+ AVGA +V+D+ +  T++ V +W ++L         + I  +L+ 
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVG 116

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           NK D     +   P        E N   + ETSA D+ N+++A K ++ +I  
Sbjct: 117 NKSDLRH--LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (298), Expect = 1e-31
 Identities = 56/174 (32%), Positives = 97/174 (55%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + K++++G+ G GKTS++ RYV+  +S  Y+ATIG DF  K ++ D + +  +Q+WD AG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++   +Y+ A    +V+DVT A++F+ +  W+ +      +      P V+L NK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
            D  +     +     E  K       F TSAK+ IN+D A + + +  L+ ++
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 3e-31
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           + +K++++GE   GKTS++ RY    F+  +  T+G  F  K L+   + +    +WD A
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNL-AIWDTA 60

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQERF  +  +YY+++ GA +V+D+T   +F  V  W ++L             C+ +  
Sbjct: 61  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR-----KMLGNEICLCIVG 115

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
                ++    +  + + + +       + TSAK N  I++    L ++++E
Sbjct: 116 NKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-30
 Identities = 42/171 (24%), Positives = 87/171 (50%), Gaps = 7/171 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++GE   GK+S++ R+V   F     +TIG  F  + +  D  T+   ++WD AGQ
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF-EIWDTAGQ 65

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ER+ ++  +YY+ A  A +V+D+T   +F     W ++          +P   + L+   
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-----LQRQASPNIVIALSGNK 120

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
                  A +  +   +  +++   + ETSAK ++N+++    + +K+ +N
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPKN 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-30
 Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 7/173 (4%)

Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
           +L+K ++IG+ G GK+ ++ ++  + F P +  TIGV+F  ++++ D + I   Q+WD A
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKL-QIWDTA 60

Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           GQE F ++TR YY+ A GA +V+D+TR  TF+ +  W +D          + +  +L+ N
Sbjct: 61  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGN 116

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           K D           + + F +EH    + ETSAK   N+++A     ++I   
Sbjct: 117 KSDLESRRD-VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRK 167

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 6e-30
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  + +   F   Y  TI   +  +V+         L + D AGQ
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE--TCLLDILDTAGQ 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  M   Y +   G   VF +    +F+ + ++++ +     + D + +P VL+ NKC
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D           +  +  + +    + ETSAK    ++DA  TLV++I ++
Sbjct: 119 DLAA--RTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 3e-29
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++ +GE   GKTS+I R+++  F   Y+ATIG+DF  K +  +  T IRLQLWD AGQ
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAGQ 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF ++   Y +++  A +V+D+T   +F    KW  D+  +     G+ +  +L+ NK 
Sbjct: 60  ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKT 115

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   +    +  + +   KE N   + ETSAK   N+    + +   +
Sbjct: 116 D-LADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL 161

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 8e-29
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI   +  +V          L++ D AG 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ--QCMLEILDTAGT 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+F  M  +Y K   G  +V+ +T  +TF+ +   ++ +   + + D   +P +L+ NKC
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILVGNKC 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D   E +     +     ++     + E+SAK  IN+++    LV++I
Sbjct: 119 DLEDERV-VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  109 bits (273), Expect = 3e-28
 Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 3/174 (1%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L K++++G+ G GKTS++ +YV++ FS  Y+ATIG DF  K +  D   +   Q+WD AG
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM-QIWDTAG 60

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QERF ++   +Y+ A    +VFDVT   TF  +  W+ +   + +  D    P V+L NK
Sbjct: 61  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 120

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
            D     +A   A+   +    N   +FETSAK+ IN++ A +T+ +  L+ + 
Sbjct: 121 IDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 172

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 6e-28
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 7/169 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G  G GK+++  ++V   F   Y  TI  DF  K +  D    +  ++ D AG 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVL-EILDTAGT 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+F +M  +Y K   G  +V+ +    +F  +   +  +           +P +L+ NK 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGNKV 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D   E    + ++     +E     + ETSAK    +D+    +V+++ 
Sbjct: 119 DLESERE-VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVRQMN 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 1e-27
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++++GE   GK+SI+ R+V   F+ +   TIG  F        +E  ++ ++WD AGQE
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL-TQRVTINEHTVKFEIWDTAGQE 63

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF ++  +YY+ A  A +V+DVT+  +F       +    ++       I   L+ NK D
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFI----KARHWVKELHEQASKDIIIALVGNKID 119

Query: 580 QPKEGIANNPAKID--EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
             +EG     A+ +  +  +E     +FETSAK   N++D    + +KI
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGEKI 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  105 bits (263), Expect = 5e-27
 Identities = 35/170 (20%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L+K++++G  G GK+++  ++++  F   Y  T    +  +         +++ + D AG
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY--RKKVVLDGEEVQIDILDTAG 61

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +   Y++   G   VF +T   +F A   +++ +       +   +P +L+ NK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGNK 118

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
               ++    +  +      + N + + ETSAK   N+D     L+++I 
Sbjct: 119 S-DLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIR 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 6e-26
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K +V+G+   GKT ++  Y    F   Y  T+  ++A+ V+         L L+D AGQ
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE--PYTLGLFDTAGQ 61

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  +  + Y +     + F V   ++F+ V +                 P +L+  + 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT----HHCPKTPFLLVGTQI 117

Query: 579 D-----------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D              +     P   ++  ++     + E SA     + +     +   L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

Query: 628 ENDKVQ 633
           E  + +
Sbjct: 178 EPPEPK 183

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 2e-25
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 7/168 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K+ ++G+ G GK+SI+ R+V   F P+   TIG  F  K + + +E      +WD AG 
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKF-LIWDTAGL 63

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           ERF  +  +YY+ +  A IV+D+T+  TF  +  W ++         G P   V +A   
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-----LRQHGPPSIVVAIAGNK 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
               +          ++    +   + ETSAK+ INI++    + ++I
Sbjct: 119 CDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISRRI 165

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 9e-25
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           + K +V+G+   GKT ++  Y +  F   Y  T+   +A+ V     +    L L+D AG
Sbjct: 9   MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ--YLLGLYDTAG 66

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE +  +  + Y       I F V   A+F  V +       +        +P +L+  +
Sbjct: 67  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA----PNVPFLLIGTQ 122

Query: 578 CD-----------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
            D              +       +  +  KE     + E SA     +       +  I
Sbjct: 123 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

Query: 627 LE 628
           L 
Sbjct: 183 LT 184

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 4e-24
 Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 17/181 (9%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K++++G+   GKT ++       F   Y  T+  +  +  +  D +  + L LWD AG 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGK-QVELALWDTAGL 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  +  + Y +     + F +    + + + +                +P +L+ NK 
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKK 116

Query: 579 DQPKE-----------GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D   +                P +  +        G+ E SAK    + +  +   +  L
Sbjct: 117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

Query: 628 E 628
           +
Sbjct: 177 Q 177

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.0 bits (240), Expect = 5e-24
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           ++KI+VIG+   GKT +  R+    F     ATIGVDF  + +  D E  I++QLWD AG
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER-IKIQLWDTAG 60

Query: 518 QERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
           QERF  +M + YY+       V+D+T  A+F ++  W ++    +   D   IP +L+ N
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVGN 117

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK---DNINIDDAAKTL 622
           KCD     I        +F   H+    FETSAK   DN +++    TL
Sbjct: 118 KCDLRSA-IQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTL 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 7e-24
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 17/181 (9%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K +V+G+   GKT ++  Y    F   Y  T+  ++            + L LWD AGQ
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY--SANVMVDGKPVNLGLWDTAGQ 63

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E +  +  + Y +   + I F +   A+F+ V                   P +L+  K 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH----HCPNTPIILVGTKL 119

Query: 579 DQPKE-----------GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
           D   +                  +     KE     + E SA     +       ++ +L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 628 E 628
            
Sbjct: 180 C 180

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 8e-24
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
           M +K    Y+++V+G  G GK+++  +++  +F   Y  TI  D   K    D       
Sbjct: 2   MQEK----YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARL- 55

Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
            + D AGQE FG M   Y +   G  +VF VT   +F+ + K+++     + + D +  P
Sbjct: 56  DILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQ---ILRVKDRDEFP 112

Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            +L+ NK D   +       +  +  ++   + + E SAK  +N+D A   LV+ I +
Sbjct: 113 MILIGNKADLDHQ-RQVTQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRK 168

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.9 bits (237), Expect = 1e-23
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K++V+G    GK+S+I+RY    F+  Y+ TIGVDF  + +   ++  +RL LWD AGQE
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQE 62

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
            F  +T+ YY+ A    +VF  T   +F+A+  W++       +          L     
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK------VVAEVGDIPTALVQNKI 116

Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
              +       + +   K      ++ TS K+++N+ +  K L +K L+
Sbjct: 117 DLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 2e-23
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 7/174 (4%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
            +K++V+G  G GK+++  +++  +F   Y      D   K+ S D        + D AG
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARL-DILDTAG 63

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
           QE FG M   Y +   G  +VF +    +F+ V K    +   + + D +  P VL+ NK
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVLVGNK 120

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
            D   E     P          +   +FE SAK  +N+D+A + LV+ + +  +
Sbjct: 121 ADL--ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 4e-23
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           +K++++G+ G GKT+ +KR++   F   Y AT+GV+    V   +   I     WD AGQ
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV-WDTAGQ 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E+FG +   YY +A  A I+FDVT   T+  V  W +D      +     IP VL  NK 
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-----LVRVCENIPIVLCGNKV 117

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
           D          AK   F ++ N   +++ SAK N N +     L +K++ +  ++
Sbjct: 118 DIKDR---KVKAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.3 bits (233), Expect = 4e-23
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK++V+G+ G GK+++  ++  + F P Y  TI   +     +        L + D AGQ
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY--LKHTEIDNQWAILDVLDTAGQ 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E F  M   Y +   G  IV+ VT  A+F+ V ++ Q +   + + D    P +L+ANK 
Sbjct: 63  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 119

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKILE 628
           D           +  E   ++N   + ETSAKD  +N+D     LV+ I +
Sbjct: 120 DLMHLRKVTRD-QGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.5 bits (231), Expect = 1e-22
 Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 6/171 (3%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           Y++ V G  G GK+S++ R+V   F   Y  T+   +  + +    ++I  LQ+ D  G 
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY--RQVISCDKSICTLQITDTTGS 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            +F  M R+   +     +V+ +T   + + +    + +       +  PI  +L+ NKC
Sbjct: 61  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI--MLVGNKC 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D+         ++ +   +    + + ETSAK N N+ +  + L+      
Sbjct: 119 DESPSRE-VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKRR 167

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 93.5 bits (231), Expect = 1e-22
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 14/181 (7%)

Query: 448 YSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI 507
            SK+   +E   +IL++G   AGKT+I+ +                              
Sbjct: 4   LSKIFGNKEM--RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE------TVTYKN 55

Query: 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGN 567
           ++  +WD+ GQ++   + R YY    G   V D       D   +    +     + D  
Sbjct: 56  VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD-- 113

Query: 568 PIPCVLLANKCDQPKEGIANNPAKID--EFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
               ++ ANK D P     +   +      I++ N+     + A     + +    L   
Sbjct: 114 -AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLTWLTSN 171

Query: 626 I 626
            
Sbjct: 172 Y 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 93.1 bits (230), Expect = 1e-22
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 14/177 (7%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLW 513
            +E   +IL++G  GAGKT+I+ R            TIG +   + LS+ +   ++L +W
Sbjct: 15  NKEL--RILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSYKN---LKLNVW 66

Query: 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573
           D+ GQ       R YY +      V D T         K    +  +  L D   +    
Sbjct: 67  DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF-- 124

Query: 574 LANKCDQPKEGIANNPAKID--EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            ANK DQP    A+  +K      +K+ ++S    +SA     I +    L+  I E
Sbjct: 125 -ANKQDQPGALSASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGLDWLIDVIKE 179

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.1 bits (222), Expect = 2e-21
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 18/180 (10%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           KI+V+G+   GKT+++  +    F  +Y  T+  ++            I L LWD +G  
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY--TASFEIDTQRIELSLWDTSGSP 61

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
            + N+  + Y ++    I FD++R  T D+VLK  +                +L+  K D
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ----EFCPNTKMLLVGCKSD 117

Query: 580 QPKEGI-----------ANNPAKIDEFIKEHNFSGWFETSAKDNIN-IDDAAKTLVQKIL 627
              +               +  +     K+   + + E SA  + N + D         +
Sbjct: 118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 2e-21
 Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 8/167 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           +IL++G   AGKT+I+ +            T        V + +++  I   +WD+ GQ+
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKN-ISFTVWDVGGQD 55

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           +   + R Y++   G   V D       +   +                +          
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR-MLAEDELRDAVLLVFANKQDLP 114

Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
                           ++  N+     T A     + +    L  ++
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLDWLSNQL 160

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 6e-21
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 10/176 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            ++ V+G+  +GK+S+I R++   +          +   K +  D +T   + + + AG 
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTH-LVLIREEAGA 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
                    +   A     VF +    +F AV +    L   +       +   L+  + 
Sbjct: 63  -----PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLS-SLRGEGRGGLALALVGTQD 116

Query: 579 DQPKEGI-ANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
                       A+      +     ++ET A   +N+D   + + QK++   K Q
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.7 bits (208), Expect = 9e-20
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 17/173 (9%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K+L +G   AGKT+++    +   +     T+   +            I+   +D+ G  
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGN-IKFTTFDLGGHI 55

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           +   + + Y+ E  G   + D      FD        L     L D   +P V+L NK D
Sbjct: 56  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKD---VPFVILGNKID 112

Query: 580 QP--------KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
            P        +  +        + I+       F  S        +A + L Q
Sbjct: 113 APNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 84.7 bits (208), Expect = 1e-19
 Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 18/181 (9%)

Query: 450 KMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIR 509
           ++ + +E   K++++G   AGKT+I+ ++                              R
Sbjct: 9   RLFNHQEH--KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE------EIVINNTR 60

Query: 510 LQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI 569
             +WDI GQE   +    YY       +V D T           +++L   +   D    
Sbjct: 61  FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS---VTREELYKMLAHEDLRKA 117

Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINIDDAAKTLVQK 625
             ++ ANK D  +       A+I +F+K  +            A     +    + ++ +
Sbjct: 118 GLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174

Query: 626 I 626
           +
Sbjct: 175 L 175

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 2e-19
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 14/174 (8%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           RE   ++L++G   AGKT+I+K++  +        TI       + + +H    +L +WD
Sbjct: 1   REL--RLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHR-GFKLNIWD 52

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
           + GQ+   +  R Y++   G   V D           +  Q L  +  L        ++ 
Sbjct: 53  VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG---ATLLIF 109

Query: 575 ANKCDQPKEGIANNPAKIDE--FIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           ANK D P     N   +  E   I+ H++      SA    ++      L+  I
Sbjct: 110 ANKQDLPGALSCNAIQEALELDSIRSHHWR-IQGCSAVTGEDLLPGIDWLLDDI 162

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 83.6 bits (205), Expect = 2e-19
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            ++ ++G   +GKT+ +       F+     T+G +          +  + ++LWDI GQ
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-----RKITKGNVTIKLWDIGGQ 57

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
            RF +M   Y +       + D       +A      +L  K  L     IP ++L NK 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNKR 114

Query: 579 DQPKEGIANNPAKID--EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           D P         +      I++      +  S K+  NID   + L+Q  
Sbjct: 115 DLPGALDEKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITLQWLIQHS 163

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 3e-19
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 7/168 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            KI ++G    GK+S+  ++V   F   Y  TI   F   +    +     LQL D AGQ
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI--TVNGQEYHLQLVDTAGQ 62

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           + +    + Y  +  G  +V+ VT   +F+     K      + +     IP +L+ N  
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFE---VIKVIHGKLLDMVGKVQIPIMLVGN-K 118

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
                    +  +     +  N + + E+SAK+N    D  + ++ + 
Sbjct: 119 KDLHMERVISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEA 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 80.4 bits (197), Expect = 4e-18
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 12/184 (6%)

Query: 445 VSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH 504
           +S   K+    +   +IL++G   AGKT+++K+   +  S     T G +          
Sbjct: 3   LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNI-----KSVQ 56

Query: 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLP 564
               +L +WDI GQ +     R Y++       V D      F+   +   +L  +    
Sbjct: 57  SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE---E 113

Query: 565 DGNPIPCVLLANKCDQPKEGIANNPAKID--EFIKEHNFSGWFETSAKDNINIDDAAKTL 622
             + +P ++ ANK D      A+  A+      I++  +      SA     + D    +
Sbjct: 114 KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWV 172

Query: 623 VQKI 626
            + +
Sbjct: 173 CKNV 176

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 6e-18
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 8/171 (4%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
           YK+L++G  G GK+++ + +      P            + +  D E         +   
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEAS----LMVYDI 55

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
                   +             V       +  K  +           + +P +L+ NK 
Sbjct: 56  WEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 115

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
           D  +     +  +        +   + ETSA  + N+    + +V++I   
Sbjct: 116 DLVRSRE-VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIRLR 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 8e-18
 Identities = 24/171 (14%), Positives = 57/171 (33%), Gaps = 4/171 (2%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
            Y++++IGE G GK+++   +     S      +  +   +           + L D+  
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
            +        +  +         V       +  K  +             IP +L+ NK
Sbjct: 63  NKGENEWLHDHCMQ--VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
            D  +     + ++        +   + ETSA    N+ +  + +V+++  
Sbjct: 121 SDLVRCRE-VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVRL 169

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 2e-17
 Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 9/171 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K+ + G  G GK++++ R++ + F   Y  T+   +  +  +   + ++ +++ D AGQ
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY--RHQATIDDEVVSMEILDTAGQ 60

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
           E        + +   G  +V+D+T   +F+ VL  K  LD      +   I         
Sbjct: 61  EDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV----GNK 115

Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN-INIDDAAKTLVQKILE 628
                    +  + ++   E   + ++E SA     NI +    L +++  
Sbjct: 116 ADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRR 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 78.6 bits (192), Expect = 2e-17
 Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 30/189 (15%)

Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLW 513
           K+    K++ +G   AGKT+++          H          L +      T      +
Sbjct: 11  KKT--GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT------F 62

Query: 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573
           D+ G  +   + + Y     G   + D           +    L    T+ +   +P ++
Sbjct: 63  DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN---VPILI 119

Query: 574 LANKCDQPKEGIANNPAKIDEFIKEHNFSG----------------WFETSAKDNINIDD 617
           L NK D+P    A +  ++ E    +  +                  F  S        +
Sbjct: 120 LGNKIDRP---EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 176

Query: 618 AAKTLVQKI 626
             + + Q I
Sbjct: 177 GFRWMAQYI 185

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (194), Expect = 3e-17
 Identities = 28/201 (13%), Positives = 60/201 (29%), Gaps = 23/201 (11%)

Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
              +++L++G   +GK++I+K+            T G+         D    +   ++D+
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIFE--TKFQVDK---VNFHMFDV 54

Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL-------DAKVTLPDGNP 568
            GQ          + +      V   +              L        +         
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKE---HNFSGWFETSAKDNINIDDAAKTLVQK 625
           I  +L  NK D   E +    +KI+++  E   +           ++  +  A   +  +
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 626 ILENDKVQANGD----SHATS 642
            L       +G      H T 
Sbjct: 175 FLRISTASGDGRHYCYPHFTC 195

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.1 bits (186), Expect = 2e-16
 Identities = 34/206 (16%), Positives = 56/206 (27%), Gaps = 40/206 (19%)

Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
           RE   K+L++G   +GK++ IK+            T G+      L      +      D
Sbjct: 1   REL--KLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRM-----VD 51

Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-------KQDLDAKVTLPDGN 567
           + GQ          ++       +  ++                  K      +T P   
Sbjct: 52  VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 111

Query: 568 PIPCVLLANKCDQPKE---------------GIANNPAKIDEFIKEHNFSGW-------- 604
               +L  NK D  +E               G   +     EFI +              
Sbjct: 112 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIY 171

Query: 605 -FETSAKDNINIDDAAKTLVQKILEN 629
              T A D  NI      +   IL+ 
Sbjct: 172 SHFTCATDTENIRFVFAAVKDTILQL 197

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (185), Expect = 2e-16
 Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 40/204 (19%)

Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
           L KIL++G   +GK++ +K+            T G+      +      +      D+ G
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKM-----VDVGG 53

Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-------LDAKVTLPDGNPIP 570
           Q          +        +   +         +            +  V     + + 
Sbjct: 54  QRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 113

Query: 571 CVLLANKCDQPKE---------------GIANNPAKIDEFIKEHNFSG----------WF 605
            +L  NK D  +E               G  +    + +F+ E                 
Sbjct: 114 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHH 173

Query: 606 ETSAKDNINIDDAAKTLVQKILEN 629
            T+A +  NI    + +   IL +
Sbjct: 174 FTTAINTENIRLVFRDVKDTILHD 197

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 1e-14
 Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 10/171 (5%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            +IL++G  GAGKT+I+ R                              ++ Q+WD+ G 
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE------TVTYKNLKFQVWDLGGL 59

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
                  R YY        V D                    +   +      V+ ANK 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVA---MLEEEELRKAILVVFANKQ 116

Query: 579 DQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
           D       +     +     +      F+TSA     +D+A + LV+ +  
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 5e-14
 Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 9/182 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
            +L +G   +GKT +  R +   +      +I    A+  ++ +    + L         
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
           RF  +   +   A     V D          +          ++   N    ++  NK D
Sbjct: 61  RF-QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 119

Query: 580 QPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
                 A +   I + +++       +     S  D+ +   A      K  E  ++   
Sbjct: 120 IAM---AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK 176

Query: 636 GD 637
            +
Sbjct: 177 VE 178

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.4 bits (166), Expect = 7e-14
 Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 41/202 (20%)

Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
            K+L++G   +GK++I+K+      +          F                 +D+ GQ
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKM----------FDVGGQ 52

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-------LKWKQDLDAKVTLPDGNPIPC 571
                     ++          ++      A         +  +  D+            
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 572 VLLANKCDQPKEGIANNPAKI-------------------DEFIKEHNFSG-----WFET 607
           +L  NK D  +E I  +P  I                    +F   +            T
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 608 SAKDNINIDDAAKTLVQKILEN 629
            A D  N+      +   I++N
Sbjct: 173 CATDTKNVQFVFDAVTDVIIKN 194

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 16/166 (9%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           I++ G   +GKTS++         P    T+     L    +D   +    L D  G  +
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV---TLVDFPGHVK 58

Query: 521 FGNMTRVYYKEAVGA-----FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
                  Y K          F+V             ++  D+ +       N I  ++  
Sbjct: 59  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 118

Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621
           NK +         P    +   E       E   K    ++     
Sbjct: 119 NKSELFTA----RPPSKIKDALESEIQKVIERRKKSLNEVERKINE 160

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 27/170 (15%), Positives = 49/170 (28%), Gaps = 14/170 (8%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
           K+++ G   AGK+S++     +  +      I       +    H   + L + D AG  
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD--IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA---VLKWKQDLDAKVTLPDGNPIPCVLLAN 576
              +       E     I          D          ++  +        +P  ++ N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D   E            + E N       SA+    +D     L Q +
Sbjct: 121 KADITGE---------TLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 9/192 (4%)

Query: 437 ITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA 496
           + +    E  P   +P       +I + G    GK+S I   +++       +  G    
Sbjct: 9   VISAVKPEQYPEGGLP-------EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61

Query: 497 LKVLSWDHE-TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ 555
           L     + E   + +  +  A   +          E                D       
Sbjct: 62  LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121

Query: 556 DLDAKVTLPDGNPIPCVLLANKCDQ-PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614
           D            IP +++A K D+ PK     +   + + +           S++    
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG 181

Query: 615 IDDAAKTLVQKI 626
            D+A   + + I
Sbjct: 182 KDEAWGAIKKMI 193

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 5/170 (2%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           +L++G    GK+++  + V +  +       GV       + +        +      + 
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580
             ++     KE      +  +  A     V+  K+ +  +            +       
Sbjct: 62  PQDIISQKMKE----VTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVAN 117

Query: 581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
             E +     ++   +    F      SA+ NIN+D   +T+++K+ E  
Sbjct: 118 KAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG 167

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 15/169 (8%), Positives = 46/169 (27%), Gaps = 4/169 (2%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           + ++G+   GK++++   +    +P            ++     E   ++   D  G  +
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK--RLRGILTEGRRQIVFVDTPGLHK 65

Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580
             +    +  + V   +          D       + +              +L      
Sbjct: 66  PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKL 125

Query: 581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
             +        +  + +    +     SA D   + +    L+  + E 
Sbjct: 126 --DAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEG 172

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 3/171 (1%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
           I ++G    GK++++ + + Q       +        +++    E   +    D  G   
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQ--KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65

Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580
                         +  + DV          +W  D +  +        P +L  NK D 
Sbjct: 66  EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDN 125

Query: 581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
            +E  A+    +     + NF      SA+  +N+D  A  + + + E   
Sbjct: 126 VQE-KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATH 175

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 15/186 (8%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
             +P       ++   G   AGK+S +    +Q        T G    + +        +
Sbjct: 9   RHLPSDTGI--EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 66

Query: 509 RL------QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVT 562
                          + ++      Y ++      +  +         L  +    A  +
Sbjct: 67  VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS 126

Query: 563 LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTL 622
                 +            K  +      +  F  +         S+     +D     L
Sbjct: 127 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV---ETFSSLKKQGVDK----L 179

Query: 623 VQKILE 628
            QK+  
Sbjct: 180 RQKLDT 185

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 22/187 (11%), Positives = 48/187 (25%), Gaps = 15/187 (8%)

Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKR-------YVHQFFSPHYRATIGVDFALKVLS 501
           SK P+  + + K+ ++G    GK+++           V               F      
Sbjct: 1   SK-PEITDAI-KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 58

Query: 502 WDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV 561
              +T    +   +  +                A +V  V  A         +     + 
Sbjct: 59  VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLME- 117

Query: 562 TLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621
                  +      +     ++          E +   ++S    TSA    NID     
Sbjct: 118 -RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR---- 172

Query: 622 LVQKILE 628
           ++  +  
Sbjct: 173 MIDAMNL 179

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 10/170 (5%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ-- 518
           + ++G   AGK+S++                 +   L V+    E   R  L DI G   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE--RFTLADIPGIIE 61

Query: 519 --ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
                  +   + +      ++  V  AA            +     P     P ++  N
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
           K D  +E       K                SA     +    + L   +
Sbjct: 122 KVDLLEE----EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALV 167

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 13/181 (7%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSW--------DHETIIRLQL 512
           I+  G    GK+++I R   +      R  +                       +   + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD---GNPI 569
                ++   +      K    A +V D   A       + + ++   V          I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW--FETSAKDNINIDDAAKTLVQKIL 627
           P ++  NK D+ K          ++F    +         SAK   NI+     + + I 
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182

Query: 628 E 628
           E
Sbjct: 183 E 183

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 6/139 (4%)

Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETIIRLQLWDIAGQ 518
            + V GE G+GK+S I             A  GV    ++   + H  I  +  WD+ G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
                    Y ++       F +  +AT       K D+D    +          +  K 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRF----KKNDIDIAKAISMMK-KEFYFVRTKV 172

Query: 579 DQPKEGIANNPAKIDEFIK 597
           D      A+   +  +  K
Sbjct: 173 DSDITNEADGEPQTFDKEK 191

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 22/172 (12%), Positives = 53/172 (30%), Gaps = 5/172 (2%)

Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
            ++ G  G GK++  KR   Q  +  Y     ++  +            L          
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64

Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580
                 +   + V  +I F     A    V     D++ +  +   N    +       +
Sbjct: 65  LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124

Query: 581 PKEGIANNPAKIDEFIKEHNFSG-WFETSAKDNINIDDAAKTLVQKILENDK 631
            ++        ++EF  +      ++ TS   ++   +    +V+ +  N +
Sbjct: 125 DEQMGERCLELVEEFESKGIDERYFYNTS---HLQPTNLND-IVKNLKTNPR 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	663
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.98
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.98
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.98
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.98
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.96
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.93
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.85
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.84
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.82
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.81
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.78
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.78
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.76
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.76
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.75
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.72
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.7
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.69
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.66
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.66
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.64
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.64
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.6
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.59
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.57
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.49
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.46
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.45
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.44
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.41
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.41
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.31
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.06
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.04
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.83
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.57
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.48
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.32
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.28
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.21
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.91
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.17
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.02
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.84
d1okkd2	207	GTPase domain of the signal recognition particle r	96.74
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.64
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.57
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.54
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.52
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.92
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.66
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.16
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.02
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.73
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.55
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.32
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.21
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.17
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.06
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.75
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.69
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.69
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.69
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.67
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.49
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.37
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.32
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.29
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.27
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.15
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.08
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.74
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.72
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.64
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	92.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	92.63
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.49
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	92.41
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.34
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	92.32
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	92.0
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.96
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	91.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	91.84
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.76
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.71
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.7
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	91.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.6
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	91.44
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	91.29
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	90.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	90.99
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.9
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.86
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	90.73
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	90.64
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	90.52
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	90.43
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.42
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	90.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	90.12
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	90.08
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.08
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	90.04
d2awna2	232	Maltose transport protein MalK, N-terminal domain	89.94
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	89.77
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	89.63
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	89.55
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	89.42
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	89.29
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	89.23
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	88.98
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	88.66
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	88.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	88.45
d1g2912	240	Maltose transport protein MalK, N-terminal domain	88.38
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	88.17
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	87.99
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	87.78
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	87.74
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	87.57
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.51
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	87.43
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	87.3
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	87.03
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	86.72
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	86.67
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	86.62
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	86.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	86.28
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	85.95
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	85.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	85.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	85.41
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	85.36
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	85.14
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	85.11
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	84.88
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	84.86
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	84.79
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	84.25
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	84.16
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.86
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	82.88
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	82.64
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	82.41
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.41
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	81.49
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	81.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.39
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	81.29
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	80.99
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	80.94
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	80.25

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=252.08  Aligned_cols=169  Identities=33%  Similarity=0.649  Sum_probs=155.9

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +++.|||+|||++|||||||+++|+.+.|...+.++++.++..+.+.+++. .+.|.+|||+|+++|..++..+++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE-KVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCE-EEEEEEEECCCchhhHHHHHHHHhccce
Confidence            567899999999999999999999999999999999999999999999886 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+...    ....+|+||||||+|+...+ .+..++++++++.+++ +|++|||++|+|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~ilvgnK~D~~~~~-~v~~~~~~~~~~~~~~-~~~~~SAktg~g  154 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGNKIDLAERR-EVSQQRAEEFSEAQDM-YYLETSAKESDN  154 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred             EEEeeecccchhhhhhhhhhhhhccc----ccccccEEEEEeeccccccc-chhhhHHHHHHHhCCC-EEEEEccCCCCC
Confidence            99999999999999999999888754    23568999999999997766 7888999999999996 799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4094         615 IDDAAKTLVQKILEND  630 (663)
Q Consensus       615 VeELFe~IIr~Ile~~  630 (663)
                      |+++|.+|+++++.+.
T Consensus       155 V~e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         155 VEKLFLDLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.3e-32  Score=251.41  Aligned_cols=173  Identities=32%  Similarity=0.601  Sum_probs=145.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|+++.|...+.++.+..+........+...+.+.+||++|++++..++..+++.++++|+
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            58999999999999999999999999999999998888887777776656889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+.++..+.......++|+||||||+|+...+..+..+++++++..++.++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            99999999999999999999887766666789999999999998766568889999999999877899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy4094         618 AAKTLVQKILEND  630 (663)
Q Consensus       618 LFe~IIr~Ile~~  630 (663)
                      +|.+|++.+++++
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.4e-32  Score=252.00  Aligned_cols=165  Identities=31%  Similarity=0.572  Sum_probs=146.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +.|||+|||++|||||||+++|+++.|.+.+.++++.++..+.+..++. .+.+++||++|++++..++..+++++|++|
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK-RVNLAIWDTAGQERFHALGPIYYRDSNGAI   80 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC-EEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCc-cceeeeeccCCcceecccchhhccCCceeE
Confidence            5699999999999999999999999999999999999999999999887 789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.||+.+..|+..+....    ....|+||||||+|+..++ .+..++++++++.+++ +|+||||++|.||+
T Consensus        81 ~v~d~~~~~Sf~~~~~~~~~~~~~~----~~~~~~ilvgnK~Dl~~~~-~v~~~e~~~~a~~~~~-~~~e~Sak~~~~v~  154 (167)
T d1z08a1          81 LVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKIDLEKER-HVSIQEAESYAESVGA-KHYHTSAKQNKGIE  154 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHH----GGGSEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEEBTTTTBSHH
T ss_pred             EEEeCCchhHHHhhhhhhhhccccc----ccccceeeecccccccccc-ccchHHHHHHHHHcCC-eEEEEecCCCcCHH
Confidence            9999999999999999998877543    2458999999999998877 7889999999999996 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4094         617 DAAKTLVQKILE  628 (663)
Q Consensus       617 ELFe~IIr~Ile  628 (663)
                      ++|.+|++.|++
T Consensus       155 e~F~~l~~~i~~  166 (167)
T d1z08a1         155 ELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.7e-32  Score=251.70  Aligned_cols=170  Identities=29%  Similarity=0.467  Sum_probs=152.8

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +...+||+|||+.|||||||+++|+.+.|...+.++.+ ++..+.+.+++. .+.+.+||++|+++|..++..+++++|+
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGI-PARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTE-EEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCe-eeeeeccccccccccccccchhhcccee
Confidence            34569999999999999999999999999999888865 666788888886 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+....   ...++|+||||||+|+...+ .+..+++..++..+++ +||+|||++|.|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sak~g~g  155 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQR-QVPRSEASAFGASHHV-AYFEASAKLRLN  155 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBS
T ss_pred             eeeecccccccccchhhhhhHHHHHHh---ccCCCceEEEEEeechhhcc-ccchhhhhHHHHhcCC-EEEEEeCCCCcC
Confidence            999999999999999999999887643   23568999999999998776 6788999999999995 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|+.|++.+.++++
T Consensus       156 v~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         156 VDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999876543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=6.5e-32  Score=249.98  Aligned_cols=168  Identities=35%  Similarity=0.693  Sum_probs=154.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +++.|||+|||+.|||||||+++|+++.|...+.++.+.++....+...+. .+.+++|||+|+++|..++..++++||+
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK-RIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecc-eEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            578899999999999999999999999999999999999999988888876 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|..+..|+..+...    .....||+|||||+|+...+ .+..+++.++++.+++ +|++|||++|.|
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~-~v~~~~~~~~~~~~~~-~~~e~Sak~g~g  154 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNKCDMEDER-VVSSERGRQLADHLGF-EFFEASAKDNIN  154 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----CCSCCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcc----cCCcceEEEEEeeccccccc-ccchhhhHHHHHHcCC-EEEEecCCCCcC
Confidence            99999999999999999999877654    34578999999999998776 7888999999999996 899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4094         615 IDDAAKTLVQKILEN  629 (663)
Q Consensus       615 VeELFe~IIr~Ile~  629 (663)
                      |+++|++|++.|+++
T Consensus       155 v~e~f~~l~~~i~ek  169 (169)
T d3raba_         155 VKQTFERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4e-32  Score=249.80  Aligned_cols=163  Identities=34%  Similarity=0.640  Sum_probs=152.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|+.+.|...+.+|++.++....+..++. .+.+.+||++|++++..++..+++++|++|+
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   80 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE-DVRLMLWDTAGQEEFDAITKAYYRGAQACVL   80 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE-EEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCc-eeeeeeeccCCccchhhhhhhhhccCceEEE
Confidence            489999999999999999999999999999999999999888888876 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+.++..++     .++|+||||||+|+..++ .+..++++++++.+++ +|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~iilVgnK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          81 VFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDS-CIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSE  153 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEECBTTTTBSSHH
T ss_pred             EEeccchhhhhhcccccccccccC-----CCceEEEeeccCCcccce-eeeehhhHHHHHHcCC-EEEEeccCCCcCHHH
Confidence            999999999999999999998764     468999999999998777 7888999999999996 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|++|++++++
T Consensus       154 ~f~~l~~~~lq  164 (164)
T d1z2aa1         154 VFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.5e-32  Score=247.74  Aligned_cols=166  Identities=31%  Similarity=0.614  Sum_probs=153.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +++.|||+|||++|||||||+++|+++.+...+.++.+.++....+.+++. .+.+++||++|+++|..++..+++++|+
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~d~   79 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWDTAGQERFRAVTRSYYRGAAG   79 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTE-EEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCE-EEEEEEeccCCchhHHHHHHHHhcCCcE
Confidence            357899999999999999999999999999999999999999999999887 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||+++..+|+.+..|+..+...    .....|++|||||+|+...+ .+..+++.++++.+++ +|++|||++|.|
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Saktg~~  153 (166)
T d1z0fa1          80 ALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQR-DVTYEEAKQFAEENGL-LFLEASAKTGEN  153 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred             EEEEeccCchHHHHHHHHHHHHHHhh----ccccceEEEEcccccchhhc-ccHHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            99999999999999999999888754    34578999999999997765 6788899999999996 899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy4094         615 IDDAAKTLVQKIL  627 (663)
Q Consensus       615 VeELFe~IIr~Il  627 (663)
                      |+++|.+|++.|+
T Consensus       154 v~e~f~~i~~~i~  166 (166)
T d1z0fa1         154 VEDAFLEAAKKIY  166 (166)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.3e-32  Score=250.31  Aligned_cols=166  Identities=20%  Similarity=0.242  Sum_probs=133.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|+|+.|||||||+++|.+..+.. +.++.+ +.+.+.+.+++. .+.|.+||++|+++|+.++..|++++|++||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~-~~~l~i~D~~g~e~~~~~~~~~~~~~d~~il   77 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVVDGE-EASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   77 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTE-EEEEEEEECC-------CHHHHHTSCSEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee-eeecceeecccc-ccceeeeecccccccceecccchhhhhhhce
Confidence            4899999999999999999999876643 333443 555677888876 7999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+..+.   ...++|+||||||+|+.+.+ .+...++++++..+++ +|++|||++|.||++
T Consensus        78 v~d~t~~~s~~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~  152 (168)
T d2gjsa1          78 VYSVTDKGSFEKASELRVQLRRAR---QTDDVPIILVGNKSDLVRSR-EVSVDEGRACAVVFDC-KFIETSAALHHNVQA  152 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC---C--CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTS-EEEECBTTTTBSHHH
T ss_pred             eccccccccccccccccchhhccc---ccccceEEEeecccchhhhc-chhHHHHHHHHHhcCC-EEEEEeCCCCcCHHH
Confidence            999999999999999999987642   34568999999999998876 7889999999999996 899999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy4094         618 AAKTLVQKILENDK  631 (663)
Q Consensus       618 LFe~IIr~Ile~~k  631 (663)
                      +|++|++.|..++.
T Consensus       153 ~f~~l~~~i~~~~~  166 (168)
T d2gjsa1         153 LFEGVVRQIRLRRD  166 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999876643

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.98  E-value=7.9e-32  Score=250.09  Aligned_cols=165  Identities=24%  Similarity=0.427  Sum_probs=147.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|||+.|||||||+++|+.+.|...|.+|++.++. +.+.+++. .+.+.+||++|++++..++..+++++|++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~-~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTE-EEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccc-cccccccccccccchhhhhhhcccccceeE
Confidence            3589999999999999999999999999999999997764 56677776 799999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+.++....   ...++|++|||||+|+...+ .+..++++++++.+++ +|++|||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiivgnK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sak~g~gv~  155 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKR-QVSVEEAKNRADQWNV-NYVETSAKTRANVD  155 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEECCTTTCTTHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhh---CCCCCcEEEEeccccccccc-cccHHHHHHHHHHcCC-eEEEEcCCCCcCHH
Confidence            9999999999999999999988653   24579999999999998766 7889999999999996 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4094         617 DAAKTLVQKILE  628 (663)
Q Consensus       617 ELFe~IIr~Ile  628 (663)
                      ++|.+|+++|..
T Consensus       156 e~f~~l~~~i~~  167 (168)
T d1u8za_         156 KVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
Confidence            999999999865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=245.55  Aligned_cols=162  Identities=33%  Similarity=0.587  Sum_probs=150.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      |||+|||+.|||||||+++|+++.|...+.++++.++....+..++. .+.+.+||++|++++..++..+++.+|++|+|
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv   79 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVV   79 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSC-EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCC-ceeeeecccCCcchhccchHHHhhccceEEEe
Confidence            79999999999999999999999999999999999988888888876 78999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ||++++.+|+.+..|+..+..+.    ..++|++|||||+|+.+.+ .+..+++.++++.+++ .||||||++|+||+++
T Consensus        80 ~d~~~~~s~~~i~~~~~~~~~~~----~~~~~iilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1          80 YDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGNKTDLADKR-QVSIEEGERKAKELNV-MFIETSAKAGYNVKQL  153 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred             eccccccchhhhHhhHHHHHHhc----CCCceEEEEecccchhhhh-hhhHHHHHHHHHHcCC-EEEEecCCCCcCHHHH
Confidence            99999999999999999888653    3579999999999998766 6788999999999996 7999999999999999


Q ss_pred             HHHHHHHHH
Q psy4094         619 AKTLVQKIL  627 (663)
Q Consensus       619 Fe~IIr~Il  627 (663)
                      |++|++.|.
T Consensus       154 f~~i~~~l~  162 (164)
T d1yzqa1         154 FRRVAAALP  162 (164)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhC
Confidence            999999875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3e-31  Score=246.41  Aligned_cols=165  Identities=32%  Similarity=0.468  Sum_probs=149.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|||+.|||||||+++|+++.|.+.+.++++.. +.+.+.+++. .+.+.+||++|++++..++..+++++|++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQ-WAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTE-EEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccc-cccccccccccccccccchhhhhhhccEEEE
Confidence            4999999999999999999999999999999998855 4566777776 7999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc-CHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI-NID  616 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe-NVe  616 (663)
                      |||++++.||+++..|+..+.+...   ..++|+||||||+|+...+ .+..+++.++++.+++ +|+||||+++. ||+
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~---~~~~p~ilvgnK~Dl~~~~-~v~~e~~~~~~~~~~~-~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDLMHLR-KVTRDQGKEMATKYNI-PYIETSAKDPPLNVD  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT---SSCCCEEEEEECTTCSTTC-CSCHHHHHHHHHHHTC-CEEEEBCSSSCBSHH
T ss_pred             ecccccchhhhccchhhHHHHhhcc---ccCccEEEEecccchhhhc-eeehhhHHHHHHHcCC-EEEEEcCCCCCcCHH
Confidence            9999999999999999999876542   3569999999999998877 7889999999999996 89999999875 999


Q ss_pred             HHHHHHHHHHHhh
Q psy4094         617 DAAKTLVQKILEN  629 (663)
Q Consensus       617 ELFe~IIr~Ile~  629 (663)
                      ++|..|++.|+++
T Consensus       157 ~~F~~l~~~i~~~  169 (169)
T d1x1ra1         157 KTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.3e-32  Score=249.09  Aligned_cols=164  Identities=25%  Similarity=0.420  Sum_probs=145.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|||++|||||||+++|+++.|...+.+|++..+ ...+.+++. .+.+.+||++|++.|..++..+++++|++|+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKS-ICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTE-EEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccc-cceeccccccccccccccccccccceeEEEE
Confidence            48999999999999999999999999999999998554 445666765 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+..+..  ...++|+||||||+|+...+ .+..++++++++.+++ +||+|||++|.||++
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilVgnK~Dl~~~~-~v~~~e~~~~~~~~~~-~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKG--DVESIPIMLVGNKCDESPSR-EVQSSEAEALARTWKC-AFMETSAKLNHNVKE  155 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTTBSHHH
T ss_pred             Eeecccccchhcccchhhhhhhhhc--cCCCCcEEEEeecccccccc-cccHHHHHHHHHHcCC-eEEEEcCCCCcCHHH
Confidence            9999999999999999988876532  34679999999999998776 7888999999999996 899999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         618 AAKTLVQKIL  627 (663)
Q Consensus       618 LFe~IIr~Il  627 (663)
                      +|..|++.+.
T Consensus       156 ~f~~l~~~~~  165 (171)
T d2erxa1         156 LFQELLNLEK  165 (171)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHH
Confidence            9999998653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=246.67  Aligned_cols=164  Identities=26%  Similarity=0.344  Sum_probs=149.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.|...+.+|++.+| .+.+.+++. .+.+.+||++|+++|..++..+++++|++|
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQ-EYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTE-EEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcE-EEEeeecccccccccccccchhhhhhhhhh
Confidence            348999999999999999999999999999999999776 467778876 799999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..++.   ..++|++|||||+|+...+ .+..++++++++.+++ .|+||||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~r-~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~  155 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVG---KVQIPIMLVGNKKDLHMER-VISYEEGKALAESWNA-AFLESSAKENQTAV  155 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHC---SSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECCTTCHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhccc---ccccceeeecccccccccc-chhHHHHHHHHHHcCC-EEEEEecCCCCCHH
Confidence            99999999999999999998876542   3569999999999998776 7889999999999996 89999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4094         617 DAAKTLVQKIL  627 (663)
Q Consensus       617 ELFe~IIr~Il  627 (663)
                      ++|+.|++.+.
T Consensus       156 ~~f~~li~~~~  166 (167)
T d1xtqa1         156 DVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=245.34  Aligned_cols=165  Identities=27%  Similarity=0.477  Sum_probs=148.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +.|||+|||+.|||||||++||+.+.|.+.+.++++..+ ...+.+++. .+.+.+||++|++.+..++..|++++|++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQ-QCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSC-EEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeee-EEEeccccccCcccccccccccccccceeE
Confidence            358999999999999999999999999999999999665 455666666 799999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+++..|+..+....   ...++|+||||||+|+...+ .+..+++..+++.++.++||||||++|.||+
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~---~~~~~p~ilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~  155 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDER-VVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhc---CCCCCeEEEEEEecCccccc-ccchhHHHHHHHHhCCCEEEEEcCCCCcCHH
Confidence            9999999999999999999887643   34679999999999998776 7788899999998766789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4094         617 DAAKTLVQKIL  627 (663)
Q Consensus       617 ELFe~IIr~Il  627 (663)
                      ++|++|+++|.
T Consensus       156 e~F~~l~~~i~  166 (167)
T d1c1ya_         156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-31  Score=250.13  Aligned_cols=166  Identities=22%  Similarity=0.339  Sum_probs=146.5

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      ....|||+|||+.|||||||++||+.+.|...+.+|++ ++..+.+.+.+. .+.+.+||++|+++|..++..+++++|+
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~-~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGK-QYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSC-EEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCc-eEEeecccccccchhhhhhhhcccccce
Confidence            45679999999999999999999999999999999997 667777777776 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHHcCCC
Q psy4094         535 AFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKCDQPK-----------EGIANNPAKIDEFIKEHNFS  602 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~-wieeL~~~~~~~~~~~IPIILVGNKsDL~d-----------er~~Vs~eei~qlak~~g~i  602 (663)
                      +|||||++++.||+++.. |+..++.+     ..++|+||||||+||.+           ..+.+..+++.++++.++.+
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-----~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  158 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-----CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCC
Confidence            999999999999998765 44555433     34699999999999865           12378899999999999977


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .|+||||++|.||+++|+.+++.++
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999999999885

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.8e-31  Score=243.23  Aligned_cols=163  Identities=30%  Similarity=0.573  Sum_probs=150.5

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|||++|||||||++||+.+.|.+.+.++++..+....+..++. .+.+.|||++|++++..++..+++.++++|
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccccccc-ccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            3589999999999999999999999999999999998888888887776 788999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+....    ..+.|++|||||+|+...+ .+..+++++++..+++ .|+||||++|.||+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iilvgnK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHG----PPSIVVAIAGNKCDLTDVR-EVMERDAKDYADSIHA-IFVETSAKNAININ  155 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS----CTTSEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBSHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhcc----CCcceEEEecccchhcccc-chhHHHHHHHHHHcCC-EEEEEecCCCCCHH
Confidence            9999999999999999998887653    3579999999999998776 7889999999999996 89999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         617 DAAKTLVQKI  626 (663)
Q Consensus       617 ELFe~IIr~I  626 (663)
                      ++|.+|+++|
T Consensus       156 e~f~~l~~~i  165 (167)
T d1z0ja1         156 ELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999986

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=246.47  Aligned_cols=165  Identities=18%  Similarity=0.302  Sum_probs=144.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||+++|+.+.|...+.+|++ +.....+.+++. .+.++|||++|++.|..++..||+++|++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGK-QVELALWDTAGLEDYDRLRPLSYPDTDVILM   79 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTE-EEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecccccccccc-ceeeeccccCccchhcccchhhcccchhhhh
Confidence            47999999999999999999999999999999988 555666777766 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      |||++++.||+++..|+..+....    ..++|+||||||+|+...+           ..+..++++++++.++++.|+|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E  155 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME  155 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH----STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             hcccchhHHHHHHHHHHHHHHHHh----CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEE
Confidence            999999999999886654444332    3569999999999996432           3578899999999999889999


Q ss_pred             EeCCCCcCHHHHHHHHHHHHHh
Q psy4094         607 TSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       607 tSAKtGeNVeELFe~IIr~Ile  628 (663)
                      |||++|.||+++|+.|++.+++
T Consensus       156 ~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         156 CSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ecCCCCcCHHHHHHHHHHHHhC
Confidence            9999999999999999998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.3e-31  Score=248.82  Aligned_cols=172  Identities=35%  Similarity=0.653  Sum_probs=157.4

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      .+++.|||+|||+.|||||||+++|+.+.+...+.++++..+....+.+++. .+.|.||||+|+++|+.+|..++++|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~i~Dt~G~e~~~~~~~~~~~~a~   80 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK-TVKLQIWDTAGQERFRTITSSYYRGSH   80 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE-EEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeE-EEEEEEEECCCchhhHHHHHHHhccCC
Confidence            4678899999999999999999999999999999999999998888988887 789999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|..+..|+..+...    ...++|+||||||+|+.+.+ .+..+++..++...++ .|++|||++|.
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~e~SAk~g~  154 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNKCDLKDKR-VVEYDVAKEFADANKM-PFLETSALDST  154 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-CEEECCTTTCT
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhc----ccCCceEEEEEecccccccc-chhHHHHhhhhhccCc-ceEEEecCcCc
Confidence            999999999999999999999888754    34678999999999998876 7888889999998885 79999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhh
Q psy4094         614 NIDDAAKTLVQKILENDKV  632 (663)
Q Consensus       614 NVeELFe~IIr~Ile~~k~  632 (663)
                      ||+++|++|++.|+.....
T Consensus       155 gi~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         155 NVEDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             THHHHHHHHHHHHHHHCCH
T ss_pred             cHHHHHHHHHHHHHHHhhh
Confidence            9999999999999876554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=241.86  Aligned_cols=165  Identities=28%  Similarity=0.497  Sum_probs=146.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|||++|||||||+++|+++.|...+.++.+ ++..+.+.+++. .+.+.+||++|++++..++..+++.+|++|+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDR-AARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTE-EEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeeccc-ccccccccccccccccccccccccccceEEE
Confidence            48999999999999999999999999999999987 666788888876 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.||+.+..|+..+.....   ....|+||||||+|+...+ .+..+++.++++.+++ +|++|||++|.||++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilvgnK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sak~~~~i~e  157 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKD---RDEFPMILIGNKADLDHQR-QVTQEEGQQLARQLKV-TYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHT---SSCCSEEEEEECTTCTTSC-SSCHHHHHHHHHHTTC-EEEECBTTTTBSHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcc---cCCCCEEEEEeccchhhhc-cchHHHHHHHHHHcCC-EEEEEcCCCCcCHHH
Confidence            9999999999999999988776532   3468999999999998876 7889999999999996 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy4094         618 AAKTLVQKILEN  629 (663)
Q Consensus       618 LFe~IIr~Ile~  629 (663)
                      +|.+|++.|.++
T Consensus       158 ~f~~l~~~i~k~  169 (171)
T d2erya1         158 AFHELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988644

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=248.09  Aligned_cols=172  Identities=33%  Similarity=0.624  Sum_probs=153.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCc---------eeEEEEEEeCCCccchhhhH
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE---------TIIRLQLWDIAGQERFGNMT  525 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge---------~~vkLqIwDTpGQErfrsl~  525 (663)
                      +++.|||+|+|++|||||||+++|+++.|...+.++.+.++..+.+.+++.         ..+.+.+||++|+++|+.++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            577899999999999999999999999999999999999988887766442         24789999999999999999


Q ss_pred             HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094         526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff  605 (663)
                      ..+++++|++|+|||++++.+|+.+..|+..+..+   .....+|++|||||+|+...+ .+..+++.++++.+++ +|+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iilv~nK~Dl~~~~-~v~~~e~~~~~~~~~~-~~~  156 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNKADLPDQR-EVNERQARELADKYGI-PYF  156 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-CEE
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhh---ccCCCceEEEEeeeccchhhh-cchHHHHHHHHHHcCC-EEE
Confidence            99999999999999999999999999998876542   234668999999999998876 7899999999999996 899


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      +|||++|+||+++|++|++.+.++.+
T Consensus       157 e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         157 ETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986644

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.2e-31  Score=248.85  Aligned_cols=164  Identities=20%  Similarity=0.312  Sum_probs=143.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||++||+.+.|..++.+|++ ++....+.+++. .+.++|||++|+++|..++..+|+++|++||
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTE-EEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCc-eeeeeccccccchhhhhhhhhcccccceeec
Confidence            48999999999999999999999999999999998 445566666665 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEE
Q psy4094         538 VFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWF  605 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ff  605 (663)
                      |||++++.||+++..|+ ..+..+     ..++|++|||||+||.+.           ...+..+++++++..++.+.|+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~-----~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYV  155 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEE
T ss_pred             ccccchHHHHHHHHHHHHHHHhhc-----CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEE
Confidence            99999999999998654 444432     356999999999998532           2368899999999998777899


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      ||||++|.||+++|+.+++.+++
T Consensus       156 e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         156 ECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             EEeCCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999999987754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=242.96  Aligned_cols=163  Identities=26%  Similarity=0.434  Sum_probs=148.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|||++|||||||+++|+++.|...+.++++ +++...+.+++. .+.+++||++|++.+..++..+++++|++|+
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSS-PSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcc-eEeeccccCCCccccccchHHHhhcccceee
Confidence            58999999999999999999999999999999988 566777777776 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|..+..|+..+....   ...++|+||||||+|+...+ .+..+++..+++.+++ +|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESER-EVSSSEGRALAEEWGC-PFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTS-CEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhc---cCCCCCEEEEEEccchhhcc-cchHHHHHHHHHHcCC-eEEEECCCCCcCHHH
Confidence            999999999999999998887643   23579999999999998776 6788999999999996 799999999999999


Q ss_pred             HHHHHHHHHH
Q psy4094         618 AAKTLVQKIL  627 (663)
Q Consensus       618 LFe~IIr~Il  627 (663)
                      +|.+|+++|.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-31  Score=243.51  Aligned_cols=170  Identities=34%  Similarity=0.606  Sum_probs=155.6

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      +++.|||+|||++|||||||+++|+.+.|...+.++.+..+....+..++. .+.+.+||++|+++|..++..+++.+|+
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCc-ceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            577899999999999999999999999999999999998888888888776 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|..+..|+..+..+.    ..++|+||||||+|+..++ .+..+++.+++..+++ +|++|||++|+|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~e~Sak~~~g  154 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILCGNKKDLDADR-EVTFLEASRFAQENEL-MFLETSALTGEN  154 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred             EEEEEecccchhHHHHhhhhccccccc----CCceEEEEEEecccccchh-chhhhHHHHHHHhCCC-EEEEeeCCCCcC
Confidence            999999999999999999999887653    3579999999999997766 7888899999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|.+|++.++++.+
T Consensus       155 i~e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         155 VEEAFVQCARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.5e-32  Score=251.60  Aligned_cols=163  Identities=34%  Similarity=0.576  Sum_probs=143.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|+|+.|||||||+++|+.+.|...+.+|++.++..+.+.+++. .+.+.|||++|++++..++..+++++|++|+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-PIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTC-CEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccc-cccccccccccccccceecchhcccccchhh
Confidence            589999999999999999999999999999999999999999998877 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.||+.+..|+..+..++     .++|+||||||+|+...+   ..+++..++..+++ +|++|||++|.||++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~---~~~~~~~~~~~~~~-~~~e~Sak~~~~v~e  152 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRK---VKAKSIVFHRKKNL-QYYDISAKSNYNFEK  152 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-----CSCCEEEEEECCCCSCSC---CTTTSHHHHSSCSS-EEEEEBTTTTBTTTH
T ss_pred             ccccccccccchhHHHHHHHhhcc-----CCCceeeecchhhhhhhh---hhhHHHHHHHHcCC-EEEEEeCCCCCCHHH
Confidence            999999999999999999988764     469999999999997755   23455678888885 899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy4094         618 AAKTLVQKILEND  630 (663)
Q Consensus       618 LFe~IIr~Ile~~  630 (663)
                      +|.+|++.|+...
T Consensus       153 ~f~~l~~~l~~~~  165 (170)
T d1i2ma_         153 PFLWLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHHHHTCT
T ss_pred             HHHHHHHHHccCC
Confidence            9999999997643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5e-31  Score=244.24  Aligned_cols=164  Identities=23%  Similarity=0.367  Sum_probs=144.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|||+.|||||||+++|+.+.|...+.+|++.+|.... ..++. .+.++|||++|++.+. .+..++++++++|+|
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~-~~~~~-~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDE-VVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEE-EETTE-EEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccc-ccccc-ceEEEEeecccccccc-cchhhhcccccceee
Confidence            89999999999999999999999999999999998875544 44555 7999999999999875 567789999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc-CHHH
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI-NIDD  617 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe-NVeE  617 (663)
                      ||++++.+|+.+..|+..+....   ...++|+||||||+|+...+ .+..++++++++.+++ +||||||++|+ ||++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~r-~V~~~e~~~~a~~~~~-~~~e~Saktg~gnV~e  154 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSR-QVSTEEGEKLATELAC-AFYECSACTGEGNITE  154 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTS-EEEECCTTTCTTCHHH
T ss_pred             cccCCccchhhhhhhcccccccc---cccCcceeeeccchhhhhhc-cCcHHHHHHHHHHhCC-eEEEEccccCCcCHHH
Confidence            99999999999999887665432   23579999999999998776 7899999999999996 89999999998 6999


Q ss_pred             HHHHHHHHHHhhh
Q psy4094         618 AAKTLVQKILEND  630 (663)
Q Consensus       618 LFe~IIr~Ile~~  630 (663)
                      +|..|++.|..++
T Consensus       155 ~F~~l~~~i~~~r  167 (168)
T d2atva1         155 IFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=242.20  Aligned_cols=168  Identities=33%  Similarity=0.634  Sum_probs=149.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      +.|||+|||++|||||||+++|+++.+...+.++.+.+.........+. .+.+.+||++|++.+..++..+++.+|++|
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK-QIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE-EEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeee-EEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            5689999999999999999999999999999999988888888888776 789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+...    ...++|+||||||+|+...+ .+..+++..++..+++ +|++|||++|+||+
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~----~~~~~piilv~nK~D~~~~~-~~~~~~~~~~a~~~~~-~~~e~Sa~tg~~V~  154 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSDLESRR-DVKREEGEAFAREHGL-IFMETSAKTACNVE  154 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEECTTTCTTHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHh----CCCCCeEEEEecCCchhhhh-hhHHHHHHHHHHHcCC-EEEEecCCCCCCHH
Confidence            999999999999999999988764    24579999999999998776 6788899999999995 89999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy4094         617 DAAKTLVQKILENDK  631 (663)
Q Consensus       617 ELFe~IIr~Ile~~k  631 (663)
                      ++|.+|++.++++.+
T Consensus       155 e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         155 EAFINTAKEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999886543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=240.96  Aligned_cols=165  Identities=27%  Similarity=0.556  Sum_probs=151.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      -.|||+|||+.|||||||+++|+.+.|...+.++.+.++....+...+. .+.+.+||++|+++|..++..++++++++|
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT-TVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccce-EEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            3589999999999999999999999999999999999998888888776 789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||+++..+|+.+..|+..+...    ...++|+||||||+|+...+ .+..+++++++..+++ +|+||||++|.||+
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~-~v~~e~~~~~~~~~~~-~~~e~SAk~g~~V~  157 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGNKADLANKR-AVDFQEAQSYADDNSL-LFMETSAKTSMNVN  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhc----cCCCceEEeecccccccccc-cccHHHHHHHHHhcCC-EEEEeeCCCCCCHH
Confidence            999999999999999999888754    24679999999999998776 7889999999999985 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4094         617 DAAKTLVQKILE  628 (663)
Q Consensus       617 ELFe~IIr~Ile  628 (663)
                      ++|.+|+++|.+
T Consensus       158 e~f~~l~~~i~~  169 (170)
T d1r2qa_         158 EIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.1e-31  Score=245.46  Aligned_cols=170  Identities=33%  Similarity=0.672  Sum_probs=126.7

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .++.|||+|||++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.|.|||++|++.|..++..+++.+|+
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE-EEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCE-EEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            578899999999999999999999999999999999999999999999887 7899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN  614 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN  614 (663)
                      +|+|||++++.+|+.+..|+..+...    ...++|+|||+||+|+...+ ....+++.+++...++ +|++|||++|+|
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~~k~D~~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~g~g  155 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKR-QVSKERGEKLALDYGI-KFMETSAKANIN  155 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCC-CSCHHHHHHHHHHHTC-EEEECCC---CC
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhh----ccCCceEEEEEecccchhhc-ccHHHHHHHHHHhcCC-EEEEEeCCCCCC
Confidence            99999999999999999999988754    34669999999999998876 6777888999999985 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy4094         615 IDDAAKTLVQKILENDK  631 (663)
Q Consensus       615 VeELFe~IIr~Ile~~k  631 (663)
                      |+++|++|++.|..++.
T Consensus       156 v~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         156 VENAFFTLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999977653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-30  Score=239.21  Aligned_cols=170  Identities=30%  Similarity=0.570  Sum_probs=152.5

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      +..|||+|||++|||||||+++|+.+.|...+.++++..+..+.+.+++. .+.+.+||++|+.++...+..++..++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE-EEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCc-eeeEeeecccCcceehhhhhhhhhccceE
Confidence            45799999999999999999999999999999999999988888888876 78999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.+|+.+..|+.++..+.......++|+||||||+|+.+ + .+..++++++++.++.++|+||||++|.||
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~-~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-R-QVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-C-SSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-c-cCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            99999999999999999999998876666667899999999999964 3 688999999999987678999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy4094         616 DDAAKTLVQKILE  628 (663)
Q Consensus       616 eELFe~IIr~Ile  628 (663)
                      +++|++|++.|+.
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=240.64  Aligned_cols=169  Identities=33%  Similarity=0.646  Sum_probs=150.6

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ++.|||+|||++|||||||+++|+++.+...+.++.+.+.....+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-TIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE-EEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCE-EEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            67899999999999999999999999999999999998988999988886 78999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |+|||++++.||..+..|+..+..+.    ..++|+||||||+|+.+.+ ....+.+..++..++. .|++|||++|.||
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~----~~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~i  154 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNNL-SFIETSALDSTNV  154 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhc----CCCCcEEEEEeeecccccc-cchHHHHHHhhcccCc-eEEEEecCCCcCH
Confidence            99999999999999999999998763    3569999999999998766 5667777888887774 8999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy4094         616 DDAAKTLVQKILENDK  631 (663)
Q Consensus       616 eELFe~IIr~Ile~~k  631 (663)
                      +++|++|++.++....
T Consensus       155 ~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         155 EEAFKNILTEIYRIVS  170 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999876544

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.6e-30  Score=234.94  Aligned_cols=163  Identities=27%  Similarity=0.512  Sum_probs=146.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .|||+|||++|||||||+++|+++.|...+.++++.++... +...+. .+.+.+||++|++.+...+..+++.++++|+
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTE-EEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeece-eeeeeeeeccCccccccchhhhhhcccccce
Confidence            48999999999999999999999999999999999777555 445554 6899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+....   ...++|+||||||+|+...  .+..++++++++.+++ +||+|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCDLAAR--TVESRQAQDLARSYGI-PYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH---TCSSCCEEEEEECTTCSCC--CSCHHHHHHHHHHHTC-CEEECCTTTCTTHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhc---CCCCCeEEEEecccccccc--cccHHHHHHHHHHhCC-eEEEEcCCCCcCHHH
Confidence            999999999999999999988753   2356999999999999653  5778999999999996 899999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4094         618 AAKTLVQKILE  628 (663)
Q Consensus       618 LFe~IIr~Ile  628 (663)
                      +|.+|++.|.+
T Consensus       155 ~f~~i~~~i~~  165 (166)
T d1ctqa_         155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=7.1e-30  Score=238.81  Aligned_cols=173  Identities=34%  Similarity=0.618  Sum_probs=157.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|+++.|...+.+|++.++..+.+...+. .+.+.+||++|+..+..++..++..||++|+
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   80 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR-LVTMQIWDTAGQERFQSLGVAFYRGADCCVL   80 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC-EEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCc-eEEEEeeecCCcccccccccccccCccEEEE
Confidence            489999999999999999999999999999999999999999888876 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||+++..+|+.+..|+..+..+.......++|+||||||+|+...  .+..+++..++...+.++|++|||++|.||++
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  158 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  158 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHH
Confidence            9999999999999999999988765555667999999999999764  47788888888777667999999999999999


Q ss_pred             HHHHHHHHHHhhhhhh
Q psy4094         618 AAKTLVQKILENDKVQ  633 (663)
Q Consensus       618 LFe~IIr~Ile~~k~~  633 (663)
                      +|++|++.+++++...
T Consensus       159 ~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         159 AFQTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999998876644

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.3e-30  Score=235.20  Aligned_cols=166  Identities=32%  Similarity=0.607  Sum_probs=142.2

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-cccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPH-YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV  533 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD  533 (663)
                      ++..|||+|||+++||||||+++|+.+.|... +..+++.++....+.+++. .+.|.||||+|+++|..++..+++++|
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV-KVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE-EEEEEEEECCCC--------CCGGGCS
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCc-EEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            57789999999999999999999999988654 5666788888888888887 789999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094         534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe  613 (663)
                      ++|+|||++++.+|..+..|+..+....    ....|+|||+||+|+...+ .+..+++.++++.+++ +|++|||++|.
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iilv~~k~d~~~~~-~v~~~~~~~~~~~~~~-~~~e~Sak~g~  155 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNKVDSAHER-VVKREDGEKLAKEYGL-PFMETSAKTGL  155 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECCSTTSCC-CSCHHHHHHHHHHHTC-CEEECCTTTCT
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhcc----CCCceEEEEEeeechhhcc-cccHHHHHHHHHHcCC-EEEEEeCCCCc
Confidence            9999999999999999999998877542    3568999999999998776 7889999999999995 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKIL  627 (663)
Q Consensus       614 NVeELFe~IIr~Il  627 (663)
                      ||+++|++|++.|.
T Consensus       156 gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         156 NVDLAFTAIAKELK  169 (170)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcC
Confidence            99999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.8e-30  Score=235.25  Aligned_cols=164  Identities=30%  Similarity=0.545  Sum_probs=149.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||+++|+++.|...+.++++.++..+.+..++. .+.|.|||++|++++..++..++..+|++|+
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~-~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH-TVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccc-cccccccccCCchhHHHHHHHHHhccceEEE
Confidence            389999999999999999999999999999999999999999988876 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE--GIANNPAKIDEFIKEHNFSGWFETSAKDNINI  615 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de--r~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV  615 (663)
                      |||++++.+|+.+..|+..+...    .....|+++|+||+|+.+.  .+.+..++++++++.+++ +|++|||++|.||
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gV  156 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTTCTTH
T ss_pred             EEeCCcccchhhhhhhhhhhccc----cccccceeeeecccccccccchhhhhHHHHHHHHHHcCC-EEEEecCCCCcCH
Confidence            99999999999999999877654    2456899999999998543  347888999999999996 8999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy4094         616 DDAAKTLVQKIL  627 (663)
Q Consensus       616 eELFe~IIr~Il  627 (663)
                      +++|..|+++|.
T Consensus       157 ~e~F~~i~~~i~  168 (170)
T d1ek0a_         157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.8e-30  Score=240.04  Aligned_cols=166  Identities=22%  Similarity=0.325  Sum_probs=144.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||+++|+.+.|...+.+|++ ++..+.+.+++. .+.++|||++|++.+..++..+++++|++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   79 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSC-EEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccce-EEeeccccccccccccccccchhhhhhhhhe
Confidence            37999999999999999999999999999999987 555666777766 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-----------EGIANNPAKIDEFIKEHNFSGWFE  606 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-----------er~~Vs~eei~qlak~~g~i~ffE  606 (663)
                      |||++++.||+.+..|+..+...    ...++|+||||||+|+..           ..+.+..+++.++++.++.+.|+|
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~----~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E  155 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQE----FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  155 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH----HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             eeecccCCCHHHHHHHHHHHHhc----cCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEE
Confidence            99999999999988765544332    135799999999999854           123688999999999999889999


Q ss_pred             EeCCCCcC-HHHHHHHHHHHHHhh
Q psy4094         607 TSAKDNIN-IDDAAKTLVQKILEN  629 (663)
Q Consensus       607 tSAKtGeN-VeELFe~IIr~Ile~  629 (663)
                      |||++|+| |+++|+.+++.++.+
T Consensus       156 ~SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         156 CSALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             EeCCCCCcCHHHHHHHHHHHHhcC
Confidence            99999996 999999999998763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-30  Score=238.49  Aligned_cols=166  Identities=20%  Similarity=0.275  Sum_probs=142.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCC---ccchhhhHHHHHhcC
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAG---QERFGNMTRVYYKEA  532 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpG---QErfrsl~~~~~r~A  532 (663)
                      ..|||+|||+.|||||||+++|.+..+.. .+.++++.+++.+.+.+++. .+.+.+||+++   |++|  ++..+++++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~d~~~~~g~e~~--~~~~~~~~~   78 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE-SATIILLDMWENKGENEW--LHDHCMQVG   78 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTE-EEEEEEECCTTTTHHHHH--HHHCCCCCC
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCc-eeeeeeeccccccccccc--ccccccccc
Confidence            35899999999999999999999877653 45677888899999999887 78899999764   5555  667789999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      |++|||||++++.+|+.+..|+..+...   ....++|+||||||+||...+ .+..+++++++..+++ +||+|||++|
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~---~~~~~~piilvgnK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~Sak~g  153 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRA---RQTEDIPIILVGNKSDLVRCR-EVSVSEGRACAVVFDC-KFIETSAAVQ  153 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTS---GGGTTSCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhc---cccCCceEEEEeccccccccc-cccHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            9999999999999999999999888753   234579999999999998876 7889999999999996 8999999999


Q ss_pred             cCHHHHHHHHHHHHHhhh
Q psy4094         613 INIDDAAKTLVQKILEND  630 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~~  630 (663)
                      +||+++|..|++.|..++
T Consensus       154 ~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         154 HNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             BSHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHcc
Confidence            999999999999987654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=239.42  Aligned_cols=165  Identities=22%  Similarity=0.337  Sum_probs=144.2

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|||++|||||||+++|+.+.|...+.+|++ ++..+.+.+++. .+.+.+||++|++.|..++..+|+++|++|
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTE-EEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCc-ceEEEeecccccccchhhhhhcccccceee
Confidence            458999999999999999999999999999999998 555666777776 789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094         537 IVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW  604 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~-wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f  604 (663)
                      +|||++++.+|+++.. |...+..+     ..++|+||||||+|+...+           ..+...++..+++.++.+.|
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHh-----CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceE
Confidence            9999999999999976 55555543     3468999999999985432           24677889999999998899


Q ss_pred             EEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094         605 FETSAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~IIr~Ile  628 (663)
                      |||||++|.||+++|..|++.++.
T Consensus       157 ~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         157 LECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEcCCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999999998853

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-29  Score=230.99  Aligned_cols=164  Identities=33%  Similarity=0.631  Sum_probs=144.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|+.+.+...+.+|++.++..+.+.+++. .+.+.|||++|+++|+.++..+++++|++|+
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK-KVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC-EEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCE-EEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            589999999999999999999999999999999999999999999887 7899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      |||++++.+|+.+..|+..+...    .....|+|+++||.|+....  ...+++.+++..+++ +|++|||++|+||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~i~~~~k~d~~~~~--~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~e  153 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRV--VTADQGEALAKELGI-PFIESSAKNDDNVNE  153 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTCC--SCHHHHHHHHHHHTC-CEEECBTTTTBSHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhcc----ccCcceeeeecchhhhhhhh--hhHHHHHHHHHhcCC-eEEEECCCCCCCHHH
Confidence            99999999999999998877754    34568999999999987644  778899999999995 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy4094         618 AAKTLVQKILEN  629 (663)
Q Consensus       618 LFe~IIr~Ile~  629 (663)
                      +|++|++.+.++
T Consensus       154 ~f~~l~~~i~~k  165 (166)
T d1g16a_         154 IFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.9e-29  Score=229.43  Aligned_cols=160  Identities=36%  Similarity=0.618  Sum_probs=144.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-hhHHHHHhcCcEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-NMTRVYYKEAVGAF  536 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-sl~~~~~r~ADgaI  536 (663)
                      .|||+|||+.|||||||+++|+.+.|...+.++++..+..+.+.+... ...+.+||++|+..+. ..+..|++++|++|
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE-RIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE-EEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeecc-ceEEEEEeccCchhhccccceeeecCCCceE
Confidence            589999999999999999999999999999999998888888888776 6889999999988765 45788999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC---Cc
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD---NI  613 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt---Ge  613 (663)
                      +|||++++.+|+.+..|+..+..+.   ...++|++|||||+|+...+ .+..++++++++.+++ +|+||||++   +.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pi~lvgnK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAI-QVPTDLAQKFADTHSM-PLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-CEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhc---cCCCCeEEEEeccccchhcc-chhHHHHHHHHHHCCC-EEEEEecccCCcCc
Confidence            9999999999999999999988753   24579999999999998876 7899999999999996 899999997   56


Q ss_pred             CHHHHHHHHH
Q psy4094         614 NIDDAAKTLV  623 (663)
Q Consensus       614 NVeELFe~II  623 (663)
                      ||+++|++|+
T Consensus       156 ~V~e~F~~lA  165 (165)
T d1z06a1         156 HVEAIFMTLA  165 (165)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHhC
Confidence            9999999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=229.78  Aligned_cols=168  Identities=38%  Similarity=0.610  Sum_probs=152.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|+.|||||||+++|+++.|...+.++.+..+..+.+.+++. .+.+.|||++|+++++.++..++.++|++|
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN-KAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEecc-ccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3589999999999999999999999999999999999998888888876 789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      +|||++++.+|+.+..|+..+..++   .....|+++++||.|+...  .+..+++.++++.+++ .|++|||++|+||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~i~~~~nk~d~~~~--~v~~~~~~~~~~~~~~-~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKIDKENR--EVDRNEGLKFARKHSM-LFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCC---SCSCCEEEEEEECTTSSSC--CSCHHHHHHHHHHTTC-EEEECCTTTCTTHH
T ss_pred             EEEECCCccccccchhhhhhhcccc---cccceeeEEEeeccccccc--cccHHHHHHHHHHCCC-EEEEEeCCCCCCHH
Confidence            9999999999999999999887532   3456899999999997543  6888999999999996 89999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy4094         617 DAAKTLVQKILENDK  631 (663)
Q Consensus       617 ELFe~IIr~Ile~~k  631 (663)
                      ++|++|++.+++...
T Consensus       159 e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         159 CAFEELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHccCcc
Confidence            999999999987654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-28  Score=228.70  Aligned_cols=168  Identities=18%  Similarity=0.223  Sum_probs=141.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||+++|+++.|.. +.++.+.. +.+.+.+++. .+.|.|||++|++++.     |++.+|++||
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~-~~~~i~v~~~-~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQ-THLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEE-EEEEEEETTE-EEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCcccee-EEEEeecCce-EEEEEEeecccccccc-----cccccceeEE
Confidence            4999999999999999999999998854 45555544 4677888876 7899999999998763     7899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINID  616 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe  616 (663)
                      |||++++.||+.+..|+..+.... ......+|++|||||.|+... .+.+..+++.+++.....+.||||||++|.||+
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~-~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLR-GEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC-C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHh-hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            999999999999999999887643 234467899999999998653 236778899999877655689999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhh
Q psy4094         617 DAAKTLVQKILENDKVQA  634 (663)
Q Consensus       617 ELFe~IIr~Ile~~k~~~  634 (663)
                      ++|..+++.++..++.++
T Consensus       156 ~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         156 RVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcc
Confidence            999999999998877544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=212.28  Aligned_cols=157  Identities=24%  Similarity=0.357  Sum_probs=130.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|+|++|||||||+++|.++.+...+.+|++.++..  +..+   .+.+.+||++|++.|...+..++.+++++++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG---NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET---TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeee---eEEEEEeeccccccccccccccccccchhhc
Confidence            3799999999999999999999999999999999876643  4443   3789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCCCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAKDN  612 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAKtG  612 (663)
                      |||+++..+|..+..|+..+...   ....++|++|||||+|+....   ...++.+...     ..+ +.|++|||++|
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~pi~lv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~-~~~~e~Sa~~g  149 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDK---PQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDRE-ICCYSISCKEK  149 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC---GGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTTTC
T ss_pred             ccccccccccchhhhhhhhhhhh---hcccCCcEEEEEeccccchhh---hHHHHHHHHHHHHHHhCC-CEEEEEeCcCC
Confidence            99999999999999988877643   234679999999999997643   3333333322     223 47999999999


Q ss_pred             cCHHHHHHHHHHHH
Q psy4094         613 INIDDAAKTLVQKI  626 (663)
Q Consensus       613 eNVeELFe~IIr~I  626 (663)
                      +||+++|+||++++
T Consensus       150 ~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         150 DNIDITLQWLIQHS  163 (164)
T ss_dssp             TTHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHcc
Confidence            99999999999854

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.93  E-value=5.7e-26  Score=209.03  Aligned_cols=160  Identities=21%  Similarity=0.297  Sum_probs=126.1

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG  534 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg  534 (663)
                      .+..+||+|+|++|||||||+++|.++.+.. ..++.+.+  ...+...+   +.+.+||++|++.|+..+..+++.+|+
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~--~~~i~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFN--IKSVQSQG---FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEE--EEEEEETT---EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeee--EEEeccCC---eeEeEeeccccccchhHHHHHhhccce
Confidence            3456999999999999999999999988753 33444433  34454443   689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----cCCCeEEEEeCC
Q psy4094         535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE----HNFSGWFETSAK  610 (663)
Q Consensus       535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~----~g~i~ffEtSAK  610 (663)
                      +|+|||+++..+|..+..|+..+..+   ....++|++|||||+|+....   ......+....    ...+.|++|||+
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~---~~~~~~pillv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~  160 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEE---EKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSAL  160 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTC---GGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhh---hccCCCeEEEEEEeccccccc---cHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            99999999999999999888776643   234579999999999997644   33333332221    122479999999


Q ss_pred             CCcCHHHHHHHHHHHH
Q psy4094         611 DNINIDDAAKTLVQKI  626 (663)
Q Consensus       611 tGeNVeELFe~IIr~I  626 (663)
                      +|+||+++|+||+++|
T Consensus       161 tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         161 TGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             TCTTHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhcC
Confidence            9999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.93  E-value=1.3e-25  Score=204.91  Aligned_cols=159  Identities=22%  Similarity=0.293  Sum_probs=125.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|.++.+ ..+.+|++...  ..+...+   +.+.+||++|++.++..+..+++.++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI--KTLEHRG---FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE--EEEEETT---EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee--eeccccc---cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            48999999999999999999998766 45666766443  3344433   789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCc
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNI  613 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGe  613 (663)
                      |||+++..+|..+..|+..+..+   ....++|+|||+||+|+.+..   ..++........    ..+.|++|||++|+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVE---ERLAGATLLIFANKQDLPGAL---SCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeecccchhHHHHHHhhhhhhhh---cccCCCceEEEEecccccccc---CHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            99999999999988776655432   234679999999999997644   344443332211    12468999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy4094         614 NIDDAAKTLVQKILE  628 (663)
Q Consensus       614 NVeELFe~IIr~Ile  628 (663)
                      ||+++|+||++++..
T Consensus       150 gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         150 DLLPGIDWLLDDISS  164 (165)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999999865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.93  E-value=8.2e-26  Score=210.26  Aligned_cols=161  Identities=24%  Similarity=0.347  Sum_probs=123.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      ...+||+|+|++|||||||+++|.++.+. ...+|.+..+  ..+...   .+.+.+||++|++.|+.++..++.+++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV--ETLSYK---NLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCE--EEEEET---TEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEE--EEEeeC---CEEEEEEecccccccchhHHhhhccceeE
Confidence            34699999999999999999999877654 3445555433  333333   37899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCC
Q psy4094         536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAK  610 (663)
Q Consensus       536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAK  610 (663)
                      |+|||+++..+|..+..|+..+..   .....++|+||||||+|+....   ..+++.+...     ..+ +.|++|||+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~---~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~-~~~~e~SA~  161 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQ---EEELQDAALLVFANKQDQPGAL---SASEVSKELNLVELKDRS-WSIVASSAI  161 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTT---SSTTSSCEEEEEEECTTSTTCC---CHHHHHHHTTTTTCCSSC-EEEEEEBGG
T ss_pred             EEEeeecccccchhHHHHHHHHHH---hhccCCcceEEEEEeecccccc---CHHHHHHHHHHHHHhhCC-CEEEEEECC
Confidence            999999999999999888766543   2344679999999999997632   4444443322     223 479999999


Q ss_pred             CCcCHHHHHHHHHHHHHhh
Q psy4094         611 DNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       611 tGeNVeELFe~IIr~Ile~  629 (663)
                      +|+||+++|++|++.+.++
T Consensus       162 ~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         162 KGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.92  E-value=5.5e-25  Score=203.47  Aligned_cols=157  Identities=20%  Similarity=0.315  Sum_probs=122.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|++|||||||+++|+.+.+.. ..+|.+..+  ..+...   .+.+.+||++|++.++..+..++++++++|
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYK---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EEEEET---TEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EEeecc---ceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            35899999999999999999999877643 334444433  223222   378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHcCCCeEEEEeCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI-----KEHNFSGWFETSAKD  611 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla-----k~~g~i~ffEtSAKt  611 (663)
                      +|||+++..++..+..|+..+..+   ....+.|++||+||+|+....   ...++....     ...+ +.|++|||++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~---~~~~~~piiiv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~-~~~~e~SA~t  157 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPDAM---KPHEIQEKLGLTRIRDRN-WYVQPSCATS  157 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTS---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECBTTT
T ss_pred             EEEecccchhHHHHHHHHHHHhhh---cccccceeeeeeecccccccc---cHHHHHHHHHHHHHHhCC-CEEEEeeCCC
Confidence            999999999999999888766542   234579999999999997643   333333322     2223 3689999999


Q ss_pred             CcCHHHHHHHHHHHH
Q psy4094         612 NINIDDAAKTLVQKI  626 (663)
Q Consensus       612 GeNVeELFe~IIr~I  626 (663)
                      |+||+|+|+||.+++
T Consensus       158 g~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         158 GDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHhc
Confidence            999999999998864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=187.04  Aligned_cols=155  Identities=20%  Similarity=0.268  Sum_probs=122.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      +||+|+|++|||||||+++|+++.+...+.....   ....+.  .. .+.+.+||++|+..++..+..++..++++|+|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~---~~~~~~--~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   74 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVE--YK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC---CEEEEE--CS-SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee---EEEEEe--ee-eEEEEEecCCCcccchhhhhhhhccceeEEEE
Confidence            5899999999999999999999887665444332   222222  22 47899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-----HHHHcCCCeEEEEeCCCCc
Q psy4094         539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-----FIKEHNFSGWFETSAKDNI  613 (663)
Q Consensus       539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-----lak~~g~i~ffEtSAKtGe  613 (663)
                      ||++++.++..+..|+..+...   .....+|+++|+||.|+.+..   ...++..     ++...+ +.|++|||++|+
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~v~~k~d~~~~~---~~~~i~~~~~~~~~~~~~-~~~~~~SAktg~  147 (160)
T d1r8sa_          75 VDSNDRERVNEAREELMRMLAE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRN-WYIQATCATSGD  147 (160)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCC-EEEEECBTTTTB
T ss_pred             EEecChHHHHHHHHHHHHHHHh---hcccCceEEEEeecccccccc---cHHHHHHHHHHHHHhhCC-CEEEEeECCCCC
Confidence            9999999999999888777643   234568999999999987643   3333322     233334 479999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy4094         614 NIDDAAKTLVQKI  626 (663)
Q Consensus       614 NVeELFe~IIr~I  626 (663)
                      ||+++|+||++++
T Consensus       148 gi~e~~~~l~~~l  160 (160)
T d1r8sa_         148 GLYEGLDWLSNQL  160 (160)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=6.2e-23  Score=188.95  Aligned_cols=158  Identities=15%  Similarity=0.101  Sum_probs=113.7

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||++||..+.+...+..       ...+...   .+.++|||++||++|+.+|..||+.++++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~-------~~~~~~~---~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV-------ETHFTFK---DLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE-------EEEEEET---TEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEE-------EEEEEee---eeeeeeeccccccccccchhhcccCCceeee
Confidence            48999999999999999999998766433322       2233333   3789999999999999999999999999999


Q ss_pred             EEeCCCcccHH-----------HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------CCCCHHHH
Q psy4094         538 VFDVTRAATFD-----------AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--------------IANNPAKI  592 (663)
Q Consensus       538 VyDVTd~~SFe-----------~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--------------~~Vs~eei  592 (663)
                      |||+++..+|.           .+..|...+.    .....+.|+++|+||+|+...+              ......++
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~----~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICN----NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEA  147 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT----CGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhc----ccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHH
Confidence            99999988763           2334443333    3445678999999999962211              01122222


Q ss_pred             HH-----HHHHc-----CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         593 DE-----FIKEH-----NFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       593 ~q-----lak~~-----g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ..     +....     ..+.+++|||++|.||+++|+.|.+.|+.+
T Consensus       148 ~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         148 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            21     11111     123577999999999999999998887654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.1e-23  Score=189.74  Aligned_cols=161  Identities=17%  Similarity=0.128  Sum_probs=124.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||+.|||||||++||..+.+  .+.+|+|+++..  +...   .+.+++||++||++++..|..+|+.++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~--~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP--FDLQ---SVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE--EECS---SCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE--Eecc---ceeeeeccccccccccccccccccccceeeE
Confidence            48999999999999999999998877  478999977643  3333   3689999999999999999999999999999


Q ss_pred             EEeCCCcc-----------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---------------CCCCHHH
Q psy4094         538 VFDVTRAA-----------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---------------IANNPAK  591 (663)
Q Consensus       538 VyDVTd~~-----------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---------------~~Vs~ee  591 (663)
                      |||+++..           .++.+..|...+...    ...+.|+++|+||+|+...+               .......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~----~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYP----WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG----GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhh----hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            99998754           356677788777643    34679999999999974321               0122333


Q ss_pred             HHHHHH----HcC-----CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         592 IDEFIK----EHN-----FSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       592 i~qlak----~~g-----~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +..+..    ...     .+.+++|||++|.||.++|+.|.+.|++.
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            333322    111     13478999999999999999999888754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.87  E-value=2.3e-21  Score=177.00  Aligned_cols=158  Identities=21%  Similarity=0.256  Sum_probs=119.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|+|.+|||||||++++.++.+... ..+.+  .....+...+   +.+.+||++|++.++..+..++..+++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~--~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC--SSCEEEEETT---EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccc--eeEEEEeecc---eEEEEeccccccccccchhhhhccceeee
Confidence            448999999999999999999999887643 23333  2233333333   68999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCC
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDN  612 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtG  612 (663)
                      +|||+++..++.....+...+..+   ......|+|||+||+|+....   ..+++.......    ..+.|++|||++|
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg  161 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTSIKDHQWHIQACCALTG  161 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             eecccccccchhhhhhhhhhhhhc---ccccceEEEEEEEcccccccC---cHHHHHHHHHHHhhHhcCCEEEEEeCCCC
Confidence            999999999999887776655532   234679999999999997643   344444443321    1247999999999


Q ss_pred             cCHHHHHHHHHHHH
Q psy4094         613 INIDDAAKTLVQKI  626 (663)
Q Consensus       613 eNVeELFe~IIr~I  626 (663)
                      +||+++|+||++++
T Consensus       162 ~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         162 EGLCQGLEWMMSRL  175 (177)
T ss_dssp             BTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.3e-22  Score=184.60  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=114.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||++||.   +...+.+|+|+.+.  .+.+.   .+.+++||++||+.++..|..+++.++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~~---~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEIK---NVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEET---TEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEeee---eeeeeeecccceeeecccccccccccceeEE
Confidence            5899999999999999999993   55678899986543  34443   3689999999999999999999999999999


Q ss_pred             EEeCCCcccH-------HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---------------CCCCHHHHHHH
Q psy4094         538 VFDVTRAATF-------DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---------------IANNPAKIDEF  595 (663)
Q Consensus       538 VyDVTd~~SF-------e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---------------~~Vs~eei~ql  595 (663)
                      |||+++..++       .....|+..+...+......++|+||||||+|+..+.               .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            9999986553       3344444444444444556789999999999974211               01122333333


Q ss_pred             HHH----cC------CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         596 IKE----HN------FSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       596 ak~----~g------~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      ...    ..      .+.+++|||+++.||+++|+.+.+.|+..
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            222    10      13466899999999999999998887654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.8e-21  Score=168.75  Aligned_cols=153  Identities=21%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF  539 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy  539 (663)
                      ||+|||++|||||||+++|+++.+. .+.++++..  ...+...+   +.+.+||+.|+..+...+..++..++++++||
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   75 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEECCTT---CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEe--EEEeccCC---eeEEEEeeccchhhhhhHhhhhhheeeeeeec
Confidence            8999999999999999999998875 345555533  33343333   46899999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----------CCCeEEEEe
Q psy4094         540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-----------NFSGWFETS  608 (663)
Q Consensus       540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-----------g~i~ffEtS  608 (663)
                      |+++..++..+..|+..+..+   ....+.|+++++||.|+...   +...++.......           ..+.||+||
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~~~k~d~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (166)
T d2qtvb1          76 DAADPERFDEARVELDALFNI---AELKDVPFVILGNKIDAPNA---VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  149 (166)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTC---TTTTTCCEEEEEECTTSSSC---CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEB
T ss_pred             cccchhhhhhhhHHHHhhhhh---hccCCceEEEEecccccccc---CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEee
Confidence            999999999998888776643   34567899999999998663   3444444333221           114699999


Q ss_pred             CCCCcCHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQ  624 (663)
Q Consensus       609 AKtGeNVeELFe~IIr  624 (663)
                      |++|+||+|+|+||++
T Consensus       150 A~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         150 VVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTTBSHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHhC
Confidence            9999999999999975

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.85  E-value=3.2e-21  Score=172.24  Aligned_cols=159  Identities=23%  Similarity=0.325  Sum_probs=122.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI  537 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL  537 (663)
                      .+||+|||++|||||||+++|+++.+... .++.+..  ...+..+   .+.+.+||.+|+..+...+..++..++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFN--VETVTYK---NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE--EEEEEET---TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-eccccee--eeeeccC---ceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            48999999999999999999999888643 3444322  2223333   3689999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-----HHHHcCCCeEEEEeCCCC
Q psy4094         538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-----FIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-----lak~~g~i~ffEtSAKtG  612 (663)
                      ++|+++..++.....|......   .......|+++|+||.|+....   ...++..     ++...+ ++|++|||++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~iv~nk~Dl~~~~---~~~~i~~~~~~~~~~~~~-~~~~~~SA~~g  151 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLE---EEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRK-WQIFKTSATKG  151 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSC-EEEEECCTTTC
T ss_pred             hhhhhhcchhhhccchhhhhhh---hhccccceEEEEEeeccccccc---cHHHHHHHHHHHHHhcCC-CEEEEEeCCCC
Confidence            9999999999888876655443   2234568999999999997754   2222222     233333 58999999999


Q ss_pred             cCHHHHHHHHHHHHHhh
Q psy4094         613 INIDDAAKTLVQKILEN  629 (663)
Q Consensus       613 eNVeELFe~IIr~Ile~  629 (663)
                      .||+++|++|++.+.++
T Consensus       152 ~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         152 TGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             TTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999988554

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=8.7e-21  Score=175.77  Aligned_cols=158  Identities=15%  Similarity=0.119  Sum_probs=113.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVY  528 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~  528 (663)
                      .-+|+|+|.+|||||||+++|++..... ......+.+.........+   ..+.+|||+|+....        .....+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR---RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT---EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee---eeeeecccccccccccccchhcccccccc
Confidence            3479999999999999999999875432 2333333344444444444   478999999975432        223345


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      +++||++|+|+|++++..... ..|+..++..     ..++|+|||+||+|+....    .+....+...++...+++||
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-----~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~iS  151 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPL-----VGKVPILLVGNKLDAAKYP----EEAMKAYHELLPEAEPRMLS  151 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-----TTTSCEEEEEECGGGCSSH----HHHHHHHHHTSTTSEEEECC
T ss_pred             cccccceeeeechhhhhcccc-cchhhheecc-----ccchhhhhhhcccccccCH----HHHHHHHHhhcccCceEEEe
Confidence            678999999999998765543 4455555532     2458999999999986532    33445555666767899999


Q ss_pred             CCCCcCHHHHHHHHHHHHHh
Q psy4094         609 AKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~Ile  628 (663)
                      |++|.||++|+++|++.+.+
T Consensus       152 A~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         152 ALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             TTCHHHHHHHHHHHHTTCCB
T ss_pred             cCCCCCHHHHHHHHHHhCCC
Confidence            99999999999999887643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.82  E-value=5e-20  Score=166.90  Aligned_cols=158  Identities=16%  Similarity=0.188  Sum_probs=116.1

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF  536 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI  536 (663)
                      ..+||+|||.+|||||||+++|.++.+... .++.+..  ...+.+++   ..+.+||+.++..+...+..++..+++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT---EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEecc---cccccccccchhhhhhHHhhhhcccceee
Confidence            458999999999999999999999877543 3444433  33445544   46899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----------------
Q psy4094         537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----------------  600 (663)
Q Consensus       537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----------------  600 (663)
                      +|+|+++...+.....++..+..   .....++|++|++||.|+...   +...++.+......                
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~K~D~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  159 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMT---DETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQTTGKGSVSLKELNAR  159 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHT---CGGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             eeeeccCccchHHHHHHHHHhhc---ccccCCCceEEEEeccCcccc---CCHHHHHHHHhhcccchhhhhhhHHHhhcC
Confidence            99999999999888766655543   223467999999999998663   35555555553321                


Q ss_pred             CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         601 FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       601 ~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      .+.|++|||++|+||+|+|+||+++|
T Consensus       160 ~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         160 PLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            13689999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.2e-20  Score=166.16  Aligned_cols=151  Identities=20%  Similarity=0.222  Sum_probs=113.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYY  529 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~  529 (663)
                      +||+|+|.+|||||||+++|++.... ..+.++...+.....+...+   ..+.+||++|..+..        .....++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG---MPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT---EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC---ceeeeccccccccccccchhHHHHHHHHHH
Confidence            79999999999999999999987654 23344444444444555554   468899999964332        2244567


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ..+|++|+++|..+..++.....|...+...     ..++|+|||+||+||..+....         ...+..+++++||
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~iilv~NK~Dl~~~~~~~---------~~~~~~~~~~iSA  144 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARL-----PAKLPITVVRNKADITGETLGM---------SEVNGHALIRLSA  144 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-----CTTCCEEEEEECHHHHCCCCEE---------EEETTEEEEECCT
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhc-----ccccceeeccchhhhhhhHHHH---------HHhCCCcEEEEEC
Confidence            8999999999999999888888777766642     2468999999999986644111         1234468999999


Q ss_pred             CCCcCHHHHHHHHHHHH
Q psy4094         610 KDNINIDDAAKTLVQKI  626 (663)
Q Consensus       610 KtGeNVeELFe~IIr~I  626 (663)
                      ++|.||++|+++|++.|
T Consensus       145 k~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2e-20  Score=181.26  Aligned_cols=165  Identities=16%  Similarity=0.145  Sum_probs=120.4

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA  535 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga  535 (663)
                      +..+||+|||+.|||||||+++|..+.    ..+|+|+.  ...+.+++   +.+++||++||+.++..|..++.+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~--~~~~~~~~---~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIF--ETKFQVDK---VNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCE--EEEEEETT---EEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeE--EEEEEECc---EEEEEEecCccceeccchhhhcccccce
Confidence            456999999999999999999997653    45788854  34455554   7899999999999999999999999999


Q ss_pred             EEEEeCCCccc-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC---CC------------------
Q psy4094         536 FIVFDVTRAAT-------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI---AN------------------  587 (663)
Q Consensus       536 ILVyDVTd~~S-------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~---~V------------------  587 (663)
                      |+|||+++...       ...+.+++..+...+......++|+||+|||+||..++.   ..                  
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            99999987543       223444555555555555567899999999999843220   00                  


Q ss_pred             --------CHHHHHHHH-----HHcC-------CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         588 --------NPAKIDEFI-----KEHN-------FSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       588 --------s~eei~qla-----k~~g-------~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                              ...++..++     ..+.       .+.+++|||.++.||+.+|..+.+.|+..
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                    022232222     1111       13356899999999999999998877754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=5.2e-19  Score=163.60  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-------hhhhHHHHHhcC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-------FGNMTRVYYKEA  532 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-------frsl~~~~~r~A  532 (663)
                      .|+|+|.+|||||||+++|++...........+.............  ..+++|||+|...       +....-..+..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCC--CeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            5999999999999999999876554333333333433333343332  4689999999432       122334557889


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN  612 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG  612 (663)
                      +++++++|+.... +..+..|...+....  ....++|+|+|+||+|+....   ..++..+.+...+ .++|++||++|
T Consensus        81 ~~~~~~~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~~-~~~~~iSA~tg  153 (180)
T d1udxa2          81 RVLLYVLDAADEP-LKTLETLRKEVGAYD--PALLRRPSLVALNKVDLLEEE---AVKALADALAREG-LAVLPVSALTG  153 (180)
T ss_dssp             SEEEEEEETTSCH-HHHHHHHHHHHHHHC--HHHHHSCEEEEEECCTTSCHH---HHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred             hhhhhhccccccc-ccchhhhhhhhhccc--cccchhhhhhhhhhhhhhhHH---HHHHHHHHHHhcC-CeEEEEEcCCC
Confidence            9999999987532 334444433332211  012347999999999986633   3344555555556 48999999999


Q ss_pred             cCHHHHHHHHHHHHHh
Q psy4094         613 INIDDAAKTLVQKILE  628 (663)
Q Consensus       613 eNVeELFe~IIr~Ile  628 (663)
                      +||++|++.|.+.+..
T Consensus       154 ~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         154 AGLPALKEALHALVRS  169 (180)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999887743

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.3e-18  Score=156.90  Aligned_cols=156  Identities=22%  Similarity=0.282  Sum_probs=102.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc---------hhhhHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER---------FGNMTRVYY  529 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr---------frsl~~~~~  529 (663)
                      .|+|+|.+|||||||+++|++.... ....+..+.......+...+   +.+.+||++|...         +......++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG---KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT---EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc---cccccccccceeeeecccccccccccccccc
Confidence            6999999999999999999976543 22223333333333444333   5789999999421         233445567


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA  609 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA  609 (663)
                      ..+|++++++|..+...... ..|+..++.       .++|+|||+||+|+..+.   ..+...++ ...+...+|++||
T Consensus        79 ~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~-------~~~pviiv~NK~Dl~~~~---~~~~~~~~-~~~~~~~~i~iSA  146 (171)
T d1mkya1          79 READLVLFVVDGKRGITKED-ESLADFLRK-------STVDTILVANKAENLREF---EREVKPEL-YSLGFGEPIPVSA  146 (171)
T ss_dssp             TTCSEEEEEEETTTCCCHHH-HHHHHHHHH-------HTCCEEEEEESCCSHHHH---HHHTHHHH-GGGSSCSCEECBT
T ss_pred             ccCcEEEEeecccccccccc-ccccccccc-------ccccccccchhhhhhhhh---hhHHHHHH-HhcCCCCeEEEec
Confidence            88999999999987665544 445555553       348999999999986422   12222222 2345557899999


Q ss_pred             CCCcCHHHHHHHHHHHHHhhh
Q psy4094         610 KDNINIDDAAKTLVQKILEND  630 (663)
Q Consensus       610 KtGeNVeELFe~IIr~Ile~~  630 (663)
                      ++|.||++|+++|++++.+..
T Consensus       147 k~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999886653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=6.7e-18  Score=159.38  Aligned_cols=121  Identities=17%  Similarity=0.185  Sum_probs=90.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-hhHHHHHhcCcEEEEE
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-NMTRVYYKEAVGAFIV  538 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-sl~~~~~r~ADgaILV  538 (663)
                      +|+|+|++|||||||+++|+++.+... .++++.++....+....  .+.+.+||++|+++++ ..+..++..++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNR--GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTT--CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeee--eeeeeeeeccccccccchhhhhhhhhccccceE
Confidence            699999999999999999999888654 46666555544433222  4789999999999886 5778888999999999


Q ss_pred             EeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         539 FDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       539 yDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      ||+++..++ .....|+..+..... ....++|+|||+||+|+...+
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~-~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHH-HhhcCCcEEEEEECcccCCCC
Confidence            999997663 444455544432221 123458999999999998754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.75  E-value=3.2e-18  Score=159.85  Aligned_cols=162  Identities=17%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-------ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYY  529 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~  529 (663)
                      ..++|+|||.+++|||||+++|++.....       +....++.+.....+.+.+   ..+.++|++|+.+|...+...+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN---YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT---EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC---ccccccccccccccccchhhhh
Confidence            34799999999999999999998633221       1122222233333333333   5789999999999999999999


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHHc-C--CCeEE
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA-NNPAKIDEFIKEH-N--FSGWF  605 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~-Vs~eei~qlak~~-g--~i~ff  605 (663)
                      ..+|++++|+|+.++...+....|. .+..       .++|+|+|+||+|+...... ...+....+.... +  ..++|
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~~~~-~~~~-------~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  152 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGEHML-ILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  152 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH-HHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhccccccccccccccchhhhhhhh-hhhh-------cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            9999999999999876655544332 2221       35899999999998653200 0112222333322 2  24789


Q ss_pred             EEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         606 ETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       606 EtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +|||++|+|+++|++.|++.+.+.
T Consensus       153 ~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEccCCcCHHHHHHHHHhcCCcc
Confidence            999999999999999999887653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=3.7e-18  Score=153.74  Aligned_cols=149  Identities=14%  Similarity=0.168  Sum_probs=104.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc--------ch-hhhHHHH
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE--------RF-GNMTRVY  528 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--------rf-rsl~~~~  528 (663)
                      +||+|+|.+|||||||+++|++.... ....+..+.......+...+   +.+.+||++|..        .+ .......
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT---EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC---eeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            58999999999999999999986543 23333333344444455554   578999999942        11 1122334


Q ss_pred             HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094         529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS  608 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS  608 (663)
                      +..+|++|+|+|++++...+...-|.. +         ...++++++||+|+....   ..+++.....  ...++|++|
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~~~~~-~---------~~~~~i~~~~k~d~~~~~---~~~~~~~~~~--~~~~~~~vS  142 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRKILER-I---------KNKRYLVVINKVDVVEKI---NEEEIKNKLG--TDRHMVKIS  142 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHHHHH-H---------TTSSEEEEEEECSSCCCC---CHHHHHHHHT--CSTTEEEEE
T ss_pred             HHhCCEEEEEEeCCCCcchhhhhhhhh-c---------ccccceeeeeeccccchh---hhHHHHHHhC--CCCcEEEEE
Confidence            678999999999999887665433321 1         236899999999997643   4444433332  224799999


Q ss_pred             CCCCcCHHHHHHHHHHH
Q psy4094         609 AKDNINIDDAAKTLVQK  625 (663)
Q Consensus       609 AKtGeNVeELFe~IIr~  625 (663)
                      |++|.||++|+++|.++
T Consensus       143 A~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             GGGTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            99999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=4.9e-17  Score=150.03  Aligned_cols=159  Identities=18%  Similarity=0.135  Sum_probs=104.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccc------------hhh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER------------FGN  523 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr------------frs  523 (663)
                      ..+||+|+|+.|||||||+++|++..... ......+.......+.+++.   .+.++|++|...            +..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR---KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE---EEEESSCSCC-----------CCSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc---eeeeeccCCccccccccccccccchhH
Confidence            35899999999999999999999865421 22222222333334455543   577888888543            234


Q ss_pred             hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----c
Q psy4094         524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE----H  599 (663)
Q Consensus       524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~----~  599 (663)
                      ....+++.+|++++|+|+..+...+. ..|+..+..       .+.|+|+|+||+|+.... .....+..+.+..    .
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~-------~~~~~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~  154 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER-------RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFI  154 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGG
T ss_pred             HHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH-------cCCceeeeccchhhhcch-hhhhhhHHHHHHHHhccc
Confidence            45566789999999999987654333 344444442       358999999999986544 2233333333332    3


Q ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         600 NFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       600 g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      +..+++++||++|.||++|+++|.+.+-
T Consensus       155 ~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         155 DYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4467999999999999999999966543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=3.3e-17  Score=150.29  Aligned_cols=152  Identities=21%  Similarity=0.240  Sum_probs=99.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc-----------chh----hh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-----------RFG----NM  524 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-----------rfr----sl  524 (663)
                      .|+|||.+|||||||+|++++........++.+.+.  ..+...     .+.||||||..           .+.    ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~-----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--cccccc-----cceecccCCceeccccccccccccchhhhhh
Confidence            599999999999999999998776555555444332  222222     26789999941           111    22


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHH----------HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVL----------KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE  594 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~----------~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q  594 (663)
                      ....++.+|++++|+|...........          .++..+.       ..++|+|+|+||+|+....    ......
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~-------~~~~p~iiv~NK~D~~~~~----~~~~~~  143 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-------ELDIPTIVAVNKLDKIKNV----QEVINF  143 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-------HTTCCEEEEEECGGGCSCH----HHHHHH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH-------HcCCCEEEEEeeeehhhhH----HHHHHH
Confidence            334457899999999987543322211          1222232       1358999999999976432    122222


Q ss_pred             HHHHcCC------CeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         595 FIKEHNF------SGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       595 lak~~g~------i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                      +...+..      ..++++||++|+||++|+++|++.+.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         144 LAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            3333321      2488999999999999999999988753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.3e-17  Score=154.36  Aligned_cols=161  Identities=12%  Similarity=0.057  Sum_probs=105.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHH---HHHhcC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTR---VYYKEA  532 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~---~~~r~A  532 (663)
                      .|+|+|.+|||||||+|+|.+........+..+.+.......+.+.  ..+++|||||+.+    ...+..   ..+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            6999999999999999999876544333333344444444555443  3588999999632    122222   335678


Q ss_pred             cEEEEEEeCCCcccHHHHHHH--HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeEEEEeC
Q psy4094         533 VGAFIVFDVTRAATFDAVLKW--KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGWFETSA  609 (663)
Q Consensus       533 DgaILVyDVTd~~SFe~L~~w--ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~ffEtSA  609 (663)
                      +.++++++............+  ..... ........++|+|||+||+|+.+..     +....+...++ ..++|.+||
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~kp~ivv~NK~Dl~~~~-----~~~~~~~~~~~~~~~v~~iSA  154 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQEL-SEYNLRLTERPQIIVANKMDMPEAA-----ENLEAFKEKLTDDYPVFPISA  154 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHH-HHSCSSTTTSCBCBEEECTTSTTHH-----HHHHHHHHHCCSCCCBCCCSS
T ss_pred             hhhhheeeecccccchhhhhhhhhhhcc-chhhhhccCCcchhhccccchHhHH-----HHHHHHHHHhccCCcEEEEEC
Confidence            999988887765443322222  21111 1123344568999999999986532     33444555442 257899999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q psy4094         610 KDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       610 KtGeNVeELFe~IIr~Ile  628 (663)
                      ++|.||++|++.|++.+.+
T Consensus       155 ~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         155 VTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHhhhh
Confidence            9999999999999988743

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=3.2e-17  Score=159.40  Aligned_cols=160  Identities=18%  Similarity=0.155  Sum_probs=103.8

Q ss_pred             EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeE----------------EEecCCceeEEEEEEeCCCccchhhh
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK----------------VLSWDHETIIRLQLWDIAGQERFGNM  524 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~k----------------tV~vdge~~vkLqIwDTpGQErfrsl  524 (663)
                      |+|||++++|||||++++++..........++......                ...+... ...+.|+|||||..|...
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET-LPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT-CCEEEEECCCTTSCCTTS
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeeccc-ccccccccccceeccccc
Confidence            99999999999999999986422111111111000000                1111111 246899999999999888


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHH--------------
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPA--------------  590 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~e--------------  590 (663)
                      +...+..||++|+|+|+.++-..+....|. .+..       .++|+|||+||+|+..........              
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~-~~~~-------~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             chhcccccceEEEEEecccCcccchhHHHH-Hhhc-------CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            888889999999999999876666544443 2332       458999999999986544211110              


Q ss_pred             -----HH----HHHHHH-------------cCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094         591 -----KI----DEFIKE-------------HNFSGWFETSAKDNINIDDAAKTLVQKILEN  629 (663)
Q Consensus       591 -----ei----~qlak~-------------~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~  629 (663)
                           ..    ..+...             .+.++++++||++|.|+++|++.|...+-+.
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                 00    111110             1124689999999999999999988766443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.66  E-value=2.1e-16  Score=149.34  Aligned_cols=165  Identities=20%  Similarity=0.197  Sum_probs=108.0

Q ss_pred             cceeEEEEEeCCCCCHHHHHHHHHhCCCC---Cccccceeee--ceeEEEe------------------cCCceeEEEEE
Q psy4094         456 EFLYKILVIGELGAGKTSIIKRYVHQFFS---PHYRATIGVD--FALKVLS------------------WDHETIIRLQL  512 (663)
Q Consensus       456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~TigiD--f~~ktV~------------------vdge~~vkLqI  512 (663)
                      +..++|+++|+.++|||||++++.+....   ......++.+  +......                  ........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45689999999999999999999864322   1111222111  1111000                  01111356899


Q ss_pred             EeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHH
Q psy4094         513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAK  591 (663)
Q Consensus       513 wDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~ee  591 (663)
                      +|+|||.+|...+...+..+|++|+|+|+.++.......+.+..++..      .-.++|+|.||+|+.+... ......
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~------~~~~iiv~inK~D~~d~~~~~~~~~~  156 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII------GQKNIIIAQNKIELVDKEKALENYRQ  156 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh------cCccceeeeecccchhhHHHHHHHHH
Confidence            999999999999988899999999999999875333333333333321      1145889999999876321 111233


Q ss_pred             HHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         592 IDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       592 i~qlak~~g--~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      +..++..++  .++|+++||++|.||++|++.|.+.+
T Consensus       157 ~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         157 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            444444433  25799999999999999999987754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.66  E-value=1e-16  Score=154.33  Aligned_cols=159  Identities=14%  Similarity=0.084  Sum_probs=118.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh----------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH----------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF  521 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg----------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf  521 (663)
                      .++|+++|+.++|||||+++++.                +....+..++++++.....+...+   ..+.++|+|||.+|
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~---~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA---RHYAHTDCPGHADY   79 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS---CEEEEEECSSHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece---eeEEeecCcchHHH
Confidence            48999999999999999999974                122345556677776656565554   47899999999999


Q ss_pred             hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHHc
Q psy4094         522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--IANNPAKIDEFIKEH  599 (663)
Q Consensus       522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--~~Vs~eei~qlak~~  599 (663)
                      ...+...+..+|++|||+|+.++..-+....|......       .-.|+||+.||+|+..+.  +.....+++.++..+
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-------~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~  152 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-------cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHh
Confidence            98888889999999999999998766655445433221       125789999999986532  122234566777766


Q ss_pred             CC----CeEEEEeCCCC----------cCHHHHHHHHHHHH
Q psy4094         600 NF----SGWFETSAKDN----------INIDDAAKTLVQKI  626 (663)
Q Consensus       600 g~----i~ffEtSAKtG----------eNVeELFe~IIr~I  626 (663)
                      ++    ++++.+||++|          .|+.+||+.|...+
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            65    57999999998          58899888876654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=2.4e-16  Score=151.96  Aligned_cols=144  Identities=14%  Similarity=0.105  Sum_probs=107.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh-----------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH-----------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER  520 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg-----------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr  520 (663)
                      .++|+++|+.++|||||+++|+.                 +...++..+.++++.....+.+++.   ++.|+|||||.+
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~---~i~iiDtPGh~d   79 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR---HYSHVDCPGHAD   79 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC---EEEEEECCCSGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCe---EEEEEeCCCchh
Confidence            48999999999999999999962                 1122334446777777777777664   789999999999


Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHH
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIK  597 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak  597 (663)
                      |...+...+..||++|||+|+.++...+....|.....        .++| +|++.||+|+.+..  +....++++.++.
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~--------~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~  151 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--------VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  151 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--------TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--------cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888776654433        3465 77889999986522  1222345566666


Q ss_pred             HcCC----CeEEEEeCCCC
Q psy4094         598 EHNF----SGWFETSAKDN  612 (663)
Q Consensus       598 ~~g~----i~ffEtSAKtG  612 (663)
                      .+++    ..++..||..+
T Consensus       152 ~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         152 QYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HTTSCTTTSCEEECCHHHH
T ss_pred             hcCCCcccceeeeeechhh
Confidence            5543    56898887644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=9.4e-16  Score=143.18  Aligned_cols=155  Identities=19%  Similarity=0.206  Sum_probs=91.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----------hhh---h
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----------FGN---M  524 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----------frs---l  524 (663)
                      .-+|+|+|.+|||||||+++|.+...........+.........+...    +.+.|+.|-..          +..   .
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE----LHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT----EEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc----ceEEEEEeeccccccccccchhhhHHhh
Confidence            348999999999999999999975432222222211111222222222    34566655211          111   2


Q ss_pred             HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH---HcCC
Q psy4094         525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK---EHNF  601 (663)
Q Consensus       525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak---~~g~  601 (663)
                      +...+..++++++|+|+.++..-.. ..++..+..       .++|+|+|+||+|+....  ...+....+..   ....
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~-------~~~piivv~NK~D~~~~~--~~~~~~~~~~~~l~~~~~  168 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY-------YGIPVIVIATKADKIPKG--KWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH-------TTCCEEEEEECGGGSCGG--GHHHHHHHHHHHHTCCTT
T ss_pred             hhccccchhhhhhhhhccccccccc-ccccccccc-------ccCcceechhhccccCHH--HHHHHHHHHHHHhcccCC
Confidence            2233456799999999987644222 344444543       358999999999985432  11222222222   2344


Q ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         602 SGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       602 i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      ..++.+||++|.|+++++++|.+.+
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            5799999999999999999998876

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.5e-15  Score=141.42  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=89.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh----cCcE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK----EAVG  534 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r----~ADg  534 (663)
                      -.|+|||++|||||||+++|+++.+.    ++++.+.....+..++   ..+.+||++|++.++..+..++.    .++.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~---~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG---SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG---SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC---eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            48999999999999999999997654    4455555555555554   35889999999988777666654    4588


Q ss_pred             EEEEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         535 AFIVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       535 aILVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      +++++|+.+ ..+++.+..|+..+...+......++|+|||+||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            888888764 67788888887655544333345679999999999997644

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.60  E-value=3.8e-15  Score=141.99  Aligned_cols=163  Identities=18%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC---Cccccceeeece--eEEEec---------------------C--CceeE
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS---PHYRATIGVDFA--LKVLSW---------------------D--HETII  508 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~TigiDf~--~ktV~v---------------------d--ge~~v  508 (663)
                      ..++|+++|+.++|||||+++|++....   .........+..  ...+.+                     .  .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            4489999999999999999999863221   111111100000  000000                     0  01124


Q ss_pred             EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-C
Q psy4094         509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-A  586 (663)
Q Consensus       509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~  586 (663)
                      .+.++|+|||.+|...+...+..||++|+|+|+.++- .-+....|. .+...      .-.|+||+.||+|+..... .
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~-~~~~~------~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGII------GVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHT------TCCCEEEEEECGGGSCHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHH-HHHHc------CCceeeeccccCCCccchHHH
Confidence            6899999999999888888899999999999999864 323222332 22210      1148899999999965331 1


Q ss_pred             CCHHHHHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         587 NNPAKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       587 Vs~eei~qlak~~g--~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      .....+..+.....  .++++++||++|.||++|++.|...+
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            11122333333332  25799999999999999999887754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=4.3e-15  Score=135.41  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=103.7

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--HHH-------
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--TRV-------  527 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--~~~-------  527 (663)
                      +.-.|+|+|.+|||||||+++|++...........+.......+...+.  ..+.+||++|.......  ...       
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            4457999999999999999999986654222222222233333333332  45677888885432211  111       


Q ss_pred             HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094         528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET  607 (663)
Q Consensus       528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt  607 (663)
                      +...+++++++.|..+..  .....+...+..       ...|+|+|+||.|+...+ .........++..++..+++++
T Consensus        82 ~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~-------~~~~~i~v~~k~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v  151 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWT--PDDEMVLNKLRE-------GKAPVILAVNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPI  151 (179)
T ss_dssp             CCCCEEEEEEEEETTCCC--HHHHHHHHHHHS-------SSSCEEEEEESTTTCCCH-HHHHHHHHHHHTTSCCSEEEEC
T ss_pred             chhhcceeEEEEecCccc--hhHHHHHHHhhh-------ccCceeeeeeeeeccchh-hhhhhHhhhhhhhcCCCCEEEE
Confidence            123467777788876533  333333333432       347899999999987654 2334556667777787789999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHh
Q psy4094         608 SAKDNINIDDAAKTLVQKILE  628 (663)
Q Consensus       608 SAKtGeNVeELFe~IIr~Ile  628 (663)
                      ||++|.|+++|++.|++.+.+
T Consensus       152 SA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         152 SAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             CTTTTTTHHHHHHHHHTTCCB
T ss_pred             eCcCCCCHHHHHHHHHHhCCC
Confidence            999999999999999887643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.57  E-value=9e-15  Score=143.21  Aligned_cols=153  Identities=19%  Similarity=0.194  Sum_probs=106.0

Q ss_pred             CCcceeEEEEEeCCCCCHHHHHHHHHhC--CCC-------------------------------CccccceeeeceeEEE
Q psy4094         454 KREFLYKILVIGELGAGKTSIIKRYVHQ--FFS-------------------------------PHYRATIGVDFALKVL  500 (663)
Q Consensus       454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~--~fs-------------------------------ee~~~TigiDf~~ktV  500 (663)
                      ..+..++|+++|+.++|||||+.+|+..  ...                               .+...+++++.....+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            3456799999999999999999999631  110                               1112233334334444


Q ss_pred             ecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCC
Q psy4094         501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCD  579 (663)
Q Consensus       501 ~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsD  579 (663)
                      ...+   ..+.|+|+|||.+|...+...+..+|++|||+|+.++..-+....|.....        .+++ +|++.||+|
T Consensus        85 ~~~~---~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~--------~gv~~iiv~vNK~D  153 (222)
T d1zunb3          85 STAK---RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--------LGIKHIVVAINKMD  153 (222)
T ss_dssp             ECSS---EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEEECTT
T ss_pred             eccc---eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHH--------cCCCEEEEEEEccc
Confidence            4333   579999999999999999999999999999999999877666555443222        2344 789999999


Q ss_pred             CCCCC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094         580 QPKEG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD  617 (663)
Q Consensus       580 L~der---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE  617 (663)
                      +.+..   +....+++..++...++    ++|+++||.+|.||.+
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         154 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            97633   11223345556666554    4689999999999843

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.3e-14  Score=143.54  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh--C-----------------------------CCCCccccceeeeceeEEEecCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH--Q-----------------------------FFSPHYRATIGVDFALKVLSWDHE  505 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg--~-----------------------------~fsee~~~TigiDf~~ktV~vdge  505 (663)
                      ..++|+++|+.++|||||+.+++.  +                             ...++..+.++++.....+.+.+ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            358999999999999999999962  1                             11124456788888888888765 


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc-------HHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT-------FDAVLKWKQDLDAKVTLPDGNPIP-CVLLANK  577 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S-------Fe~L~~wieeL~~~~~~~~~~~IP-IILVGNK  577 (663)
                        .++.|.|+|||.+|...+...+..+|++|||+|+.+...       .+....|+....        .+++ +|++.||
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~--------~gv~~iiv~iNK  153 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--------LGVRQLIVAVNK  153 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--------TTCCEEEEEEEC
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH--------cCCCeEEEEEEC
Confidence              589999999999999999999999999999999986532       234444432222        2355 8899999


Q ss_pred             CCCCCCC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094         578 CDQPKEG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD  617 (663)
Q Consensus       578 sDL~der---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE  617 (663)
                      +|+....   +....+++..++...++    +.|+.+||..|.|+.+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            9986533   12223455666666554    5689999999998755

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=4.1e-13  Score=135.92  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=90.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh------------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH------------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg------------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ...+|+|+|+.|+|||||+.+++.                  +...++..+.+++......+.+.+   .+++|+||||+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~---~~~n~iDtPG~   81 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD---HRINIIDAPGH   81 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT---EEEEEECCCSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC---eEEEEecCCch
Confidence            456899999999999999999962                  111233445555666666677766   47999999999


Q ss_pred             cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094         519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK  582 (663)
Q Consensus       519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d  582 (663)
                      .+|.......++.+|++|+|+|..++-..+...-|...-.        .++|+|++.||.|...
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~--------~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHT--------TTCCEEEEEECTTSTT
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHH--------cCCCEEEEEecccccc
Confidence            9999999999999999999999999998888888854332        4699999999999754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.45  E-value=2.4e-14  Score=138.92  Aligned_cols=151  Identities=14%  Similarity=0.198  Sum_probs=96.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh--CC-----------------------------CCCccccceeeeceeEEEecCCce
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH--QF-----------------------------FSPHYRATIGVDFALKVLSWDHET  506 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg--~~-----------------------------fsee~~~TigiDf~~ktV~vdge~  506 (663)
                      .++|+|+|+.++|||||+.+|+.  +.                             ...+..+.+.++.....+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            47999999999999999998852  11                             1122334444444445555544  


Q ss_pred             eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHH------HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094         507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDA------VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ  580 (663)
Q Consensus       507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~------L~~wieeL~~~~~~~~~~~IPIILVGNKsDL  580 (663)
                       ..+.|+|||||.+|...+...++-||++|||+|+.++..-+.      ..+.+..+..    .  ...++|++.||+|+
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~----~--~~~~iIv~iNK~D~  153 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT----M--GLDQLIVAVNKMDL  153 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH----T--TCTTCEEEEECGGG
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH----h--CCCceEEEEEcccC
Confidence             579999999999999999999999999999999998643221      1111111111    1  12468999999998


Q ss_pred             CCCCC-----CCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094         581 PKEGI-----ANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD  617 (663)
Q Consensus       581 ~der~-----~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE  617 (663)
                      ....+     .....++..+...++.    ++|+++||..|.||.+
T Consensus       154 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         154 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            64321     1122334455555543    4689999999999854

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.44  E-value=1e-12  Score=132.32  Aligned_cols=112  Identities=17%  Similarity=0.217  Sum_probs=89.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCC--C----------------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQF--F----------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER  520 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~--f----------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr  520 (663)
                      .+|+|+|+.++|||||+.+++...  .                .++..+.+++......+.+.+   .+++|+|||||.+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~---~~~n~iDtPGh~d   79 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG---HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT---EEEEEEECCCSGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc---cceeEEccCchhh
Confidence            579999999999999999996311  1                012234455555566677766   4789999999999


Q ss_pred             hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      |.......++-+|++|+|+|+.++-..+....|.....        .++|+|++.||+|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~--------~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--------LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh--------ccccccccccccccc
Confidence            99999999999999999999999998888888865444        358999999999964

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.5e-13  Score=121.72  Aligned_cols=162  Identities=14%  Similarity=0.064  Sum_probs=83.4

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-------hhhhHHH
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-------FGNMTRV  527 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-------frsl~~~  527 (663)
                      .+..++|+|+|.+|||||||++++.+...........+.......+..... ...+..++..+...       +......
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhhh
Confidence            345689999999999999999999886554332222221222222222222 12222222222111       1112222


Q ss_pred             HHh---cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc-CCC
Q psy4094         528 YYK---EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH-NFS  602 (663)
Q Consensus       528 ~~r---~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~-g~i  602 (663)
                      +..   ..+.++++.+........ ...++..+..       ...++++++||+|+.... .....+.+.+....+ +..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~  163 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  163 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             hhhhhhheeEEEEeecccccchhH-HHHHHHHhhh-------ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence            222   233444555555443333 3445555543       347899999999976522 011122233333333 345


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQK  625 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~  625 (663)
                      +++.+||++|.||++|++.|.+-
T Consensus       164 ~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         164 QVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHH
Confidence            78999999999999999988653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=1.3e-13  Score=136.45  Aligned_cols=154  Identities=18%  Similarity=0.198  Sum_probs=85.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhC--CC-----------------------------CCccccceeeeceeEEEecCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQ--FF-----------------------------SPHYRATIGVDFALKVLSWDHE  505 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~--~f-----------------------------see~~~TigiDf~~ktV~vdge  505 (663)
                      ..++|+|+|+.++|||||+.+|+..  ..                             ..+..+.+.++.....+.+.+ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            4679999999999999999999521  10                             112223333444344444433 


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccH-------HHHHHHHHHHHhhcCCCCCCCC-cEEEEEeC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATF-------DAVLKWKQDLDAKVTLPDGNPI-PCVLLANK  577 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SF-------e~L~~wieeL~~~~~~~~~~~I-PIILVGNK  577 (663)
                        ..+.+.|+|||..|...+......+|++|+|+|+.++..-       +....+ ..+..       .++ .+|++.||
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~-------~~i~~iiv~iNK  171 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART-------QGINHLVVVINK  171 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH-------TTCSSEEEEEEC
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHH-------cCCCeEEEEEEc
Confidence              4799999999999999999999999999999999875311       112222 22221       234 47899999


Q ss_pred             CCCCCCCC-----CCCHHHHHHHHHHc-CC-----CeEEEEeCCCCcCHHHHHHH
Q psy4094         578 CDQPKEGI-----ANNPAKIDEFIKEH-NF-----SGWFETSAKDNINIDDAAKT  621 (663)
Q Consensus       578 sDL~der~-----~Vs~eei~qlak~~-g~-----i~ffEtSAKtGeNVeELFe~  621 (663)
                      +|+....+     ....+++..++... ++     ++|+++||++|+||.++++.
T Consensus       172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            99865321     11122333333332 22     46999999999999876543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=4e-12  Score=131.99  Aligned_cols=152  Identities=15%  Similarity=0.142  Sum_probs=105.3

Q ss_pred             CcceeEEEEEeCCCCCHHHHHHHHHh----------------CCCCCccccceeeeceeEEEecC-------------Cc
Q psy4094         455 REFLYKILVIGELGAGKTSIIKRYVH----------------QFFSPHYRATIGVDFALKVLSWD-------------HE  505 (663)
Q Consensus       455 ~d~~~KIVVLGd~GVGKTSLInrLlg----------------~~fsee~~~TigiDf~~ktV~vd-------------ge  505 (663)
                      .+...+|+|+|+.++|||||+.+|+.                +....+..+.+++......+.+.             ..
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            34455799999999999999999972                11122333444444433333221             11


Q ss_pred             eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4094         506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI  585 (663)
Q Consensus       506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~  585 (663)
                      ..+.++|+|||||.+|.......++-+|++|+|+|+.++-..+...-|...+.        .++|+|||.||+|......
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~--------~~~p~i~viNKiDr~~~el  165 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRALLEL  165 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHHHHTS
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH--------cCCCeEEEEECcccccccH
Confidence            25789999999999999999999999999999999999999998888877665        4589999999999654333


Q ss_pred             CCCHHHHHHHHHH-----------c-----C---C----CeEEEEeCCCCcC
Q psy4094         586 ANNPAKIDEFIKE-----------H-----N---F----SGWFETSAKDNIN  614 (663)
Q Consensus       586 ~Vs~eei~qlak~-----------~-----g---~----i~ffEtSAKtGeN  614 (663)
                      ....+++...+..           +     +   .    ..++..||..|+.
T Consensus       166 ~~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~  217 (341)
T d1n0ua2         166 QVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA  217 (341)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred             HhhHHHHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeE
Confidence            4455555443321           0     1   0    1378999999863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.06  E-value=4.6e-10  Score=105.74  Aligned_cols=113  Identities=13%  Similarity=-0.049  Sum_probs=68.2

Q ss_pred             EEEEEEeCCCccchhhhHHH---HH--hcCcEEEEEEeCCCcccHHHHHHHH---HHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRV---YY--KEAVGAFIVFDVTRAATFDAVLKWK---QDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~---~~--r~ADgaILVyDVTd~~SFe~L~~wi---eeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      ..+.+.|++||..+......   .+  ...+.+++++|+.....-.....+.   ..+...      ...|.|+|.||+|
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~------~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR------LGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH------HTSCEEEEECCGG
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH------hCCCceeeeeccc
Confidence            34889999999865433222   22  2356899999987544433322111   111111      2479999999999


Q ss_pred             CCCCCCC-------CCH---------------H---H-HHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         580 QPKEGIA-------NNP---------------A---K-IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       580 L~der~~-------Vs~---------------e---e-i~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      +......       ...               .   . .......++.++++++||++|+||++|+..|.++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         169 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            8653200       000               0   0 00011223456899999999999999999988865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=8.3e-10  Score=115.78  Aligned_cols=162  Identities=16%  Similarity=0.166  Sum_probs=94.6

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceee---eceeEEEecCCceeEEEEEEeCCCccchhhh-----HHHHH
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV---DFALKVLSWDHETIIRLQLWDIAGQERFGNM-----TRVYY  529 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tigi---Df~~ktV~vdge~~vkLqIwDTpGQErfrsl-----~~~~~  529 (663)
                      .++|+|+|.+|||||||+|.++|...........|+   ......+...+.  -.+.||||||-......     ....+
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~--~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI--PNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC--TTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC--CeEEEEeCCCcccccccHHHHHHHhhh
Confidence            489999999999999999999985543322211111   111122222222  23779999996543322     22335


Q ss_pred             hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC------CCCCCCHHH----H----HHH
Q psy4094         530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK------EGIANNPAK----I----DEF  595 (663)
Q Consensus       530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d------er~~Vs~ee----i----~ql  595 (663)
                      ..+|.+|++.|..  -.-.. ..++..+..       .+.|+++|.||+|...      .......+.    +    ...
T Consensus       134 ~~~d~~l~~~~~~--~~~~d-~~l~~~l~~-------~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~  203 (400)
T d1tq4a_         134 YEYDFFIIISATR--FKKND-IDIAKAISM-------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT  203 (400)
T ss_dssp             GGCSEEEEEESSC--CCHHH-HHHHHHHHH-------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCC--CCHHH-HHHHHHHHH-------cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHH
Confidence            6788888887643  22222 234444543       3589999999999521      111122222    2    122


Q ss_pred             HHHcCC--CeEEEEeCCC--CcCHHHHHHHHHHHHHhhhh
Q psy4094         596 IKEHNF--SGWFETSAKD--NINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       596 ak~~g~--i~ffEtSAKt--GeNVeELFe~IIr~Ile~~k  631 (663)
                      ....+.  .++|.+|...  .+++.+|.+.+.+.+...++
T Consensus       204 l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         204 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence            222232  3578888764  46899999999888776554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.83  E-value=1.5e-08  Score=99.63  Aligned_cols=123  Identities=15%  Similarity=0.083  Sum_probs=74.3

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHHHH
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTRVY  528 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~~~  528 (663)
                      ..++|+|+|.+|||||||+|.+++..... ...+..+.+.......+++   ..+.||||||-....       .....+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g---~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG---FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT---EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc---EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            45899999999999999999999865442 2223333344444455555   479999999953221       112222


Q ss_pred             H--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         529 Y--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       529 ~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      .  ...++++||++++...--......+..+...+..  ..-.++|||.||+|+....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~--~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK--GIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch--hhhhCEEEEEECcccCCcC
Confidence            2  3467888999887643211222233333332210  1124789999999986543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.57  E-value=1.4e-07  Score=96.48  Aligned_cols=104  Identities=10%  Similarity=0.013  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN  587 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V  587 (663)
                      +.+.|+.|.|.-.-.   ..+...+|.+|+|.....++..+.+..-+-+            +.=|+|.||+|+.... ..
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE------------~aDi~vvNKaD~~~~~-~~  207 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE------------LADMIAVNKADDGDGE-RR  207 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH------------HCSEEEEECCSTTCCH-HH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhh------------hhheeeEeccccccch-HH
Confidence            356777777643211   2245569999999999887766554322222            2238999999986532 11


Q ss_pred             CHHHHHHHHHHc---------CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094         588 NPAKIDEFIKEH---------NFSGWFETSAKDNINIDDAAKTLVQKIL  627 (663)
Q Consensus       588 s~eei~qlak~~---------g~i~ffEtSAKtGeNVeELFe~IIr~Il  627 (663)
                      .......+...+         ...+++.|||.+|.||++++++|.++.-
T Consensus       208 ~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         208 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            111111112211         2256999999999999999999977653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=1.2e-07  Score=97.24  Aligned_cols=102  Identities=10%  Similarity=0.029  Sum_probs=58.3

Q ss_pred             EEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCC
Q psy4094         510 LQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANN  588 (663)
Q Consensus       510 LqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs  588 (663)
                      +.|++|.|.-.-   -..+...+|.+|+|.+....+..+.+..-+-++-            =|+|.||+|+.... ....
T Consensus       149 ~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~a------------Di~VvNKaD~~~~~~~~~~  213 (327)
T d2p67a1         149 VVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVA------------DLIVINKDDGDNHTNVAIA  213 (327)
T ss_dssp             EEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHHC------------SEEEECCCCTTCHHHHHHH
T ss_pred             eEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhccc------------cEEEEEeecccchHHHHHH
Confidence            455556553211   1235667999999998776665554444333322            27889999986522 0011


Q ss_pred             HHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094         589 PAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKI  626 (663)
Q Consensus       589 ~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~I  626 (663)
                      ..+.......+.      ..+++.|||.+|.||++|++.|.++.
T Consensus       214 ~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         214 RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            122222332221      24699999999999999999997755

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.32  E-value=6e-06  Score=82.10  Aligned_cols=85  Identities=15%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCc--------------eeEEEEEEeCCCccc---
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHE--------------TIIRLQLWDIAGQER---  520 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge--------------~~vkLqIwDTpGQEr---  520 (663)
                      +||.|||-++||||||++.+.+... .....+..+++-..-.+.+.+.              ....+++.|++|-..   
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~   90 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS   90 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccc
Confidence            7999999999999999999997643 3344444444443333444331              125689999998431   


Q ss_pred             -hhhh---HHHHHhcCcEEEEEEeCCC
Q psy4094         521 -FGNM---TRVYYKEAVGAFIVFDVTR  543 (663)
Q Consensus       521 -frsl---~~~~~r~ADgaILVyDVTd  543 (663)
                       -..+   .-..+++||++|+|+|+.+
T Consensus        91 ~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          91 TGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccHHHHHHHhhccceeEEEEeccC
Confidence             2222   2334688999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=3.5e-06  Score=82.63  Aligned_cols=118  Identities=20%  Similarity=0.275  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCCc-ccccee----eecee-------------------------------------
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSPH-YRATIG----VDFAL-------------------------------------  497 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fsee-~~~Tig----iDf~~-------------------------------------  497 (663)
                      +|+|+|+-++|||||+|.+++..+.+. ..++..    +.+..                                     
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN  107 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCC
Confidence            799999999999999999998775322 211110    01000                                     


Q ss_pred             -------EEEecCCceeEEEEEEeCCCccc-------------hhhhHHHHHhcCcEEE-EEEeCCCcccHHHHHHHHHH
Q psy4094         498 -------KVLSWDHETIIRLQLWDIAGQER-------------FGNMTRVYYKEAVGAF-IVFDVTRAATFDAVLKWKQD  556 (663)
Q Consensus       498 -------ktV~vdge~~vkLqIwDTpGQEr-------------frsl~~~~~r~ADgaI-LVyDVTd~~SFe~L~~wiee  556 (663)
                             ..+.+.......+.|+|+||-..             ...+...|+..++.+| +|.+......-..+..|...
T Consensus       108 ~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~  187 (299)
T d2akab1         108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE  187 (299)
T ss_dssp             TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH
T ss_pred             cCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHH
Confidence                   00000000012488999999421             2245667777887655 56666655555566667666


Q ss_pred             HHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094         557 LDAKVTLPDGNPIPCVLLANKCDQPKEG  584 (663)
Q Consensus       557 L~~~~~~~~~~~IPIILVGNKsDL~der  584 (663)
                      +..       ...++++|.||+|+.+..
T Consensus       188 ~~~-------~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         188 VDP-------QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HCT-------TCSSEEEEEECGGGSCTT
T ss_pred             hCc-------CCCceeeEEeccccccch
Confidence            542       346789999999987643

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.25  E-value=3.4e-06  Score=83.11  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=53.4

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCc------------e--eEEEEEEeCCCccc---
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE------------T--IIRLQLWDIAGQER---  520 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge------------~--~vkLqIwDTpGQEr---  520 (663)
                      .+||.|||-++||||||++++.+........+..+++-..-.+.+.+.            .  ...+.++|+||-..   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            379999999999999999999976554444344333333333444321            1  13588999999432   


Q ss_pred             -hhhhH---HHHHhcCcEEEEEEeCC
Q psy4094         521 -FGNMT---RVYYKEAVGAFIVFDVT  542 (663)
Q Consensus       521 -frsl~---~~~~r~ADgaILVyDVT  542 (663)
                       -..+.   -..+++||++|+|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence             12232   23468899999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.21  E-value=2.1e-06  Score=84.80  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=44.7

Q ss_pred             EEEEEeCCCccc-------------hhhhHHHHHhcCcEEEEEE-eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q psy4094         509 RLQLWDIAGQER-------------FGNMTRVYYKEAVGAFIVF-DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL  574 (663)
Q Consensus       509 kLqIwDTpGQEr-------------frsl~~~~~r~ADgaILVy-DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILV  574 (663)
                      .+.|+|+||-..             ...++..|+.+++.+|+++ +......-.....|...+.       .....+|+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~-------~~~~r~i~V  204 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-------PEGKRTIGV  204 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-------SSCSSEEEE
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC-------cCCCeEEEE
Confidence            478999999432             2357778899999887766 4433333333445555543       234689999


Q ss_pred             EeCCCCCCC
Q psy4094         575 ANKCDQPKE  583 (663)
Q Consensus       575 GNKsDL~de  583 (663)
                      .||+|..+.
T Consensus       205 itk~D~~~~  213 (306)
T d1jwyb_         205 ITKLDLMDK  213 (306)
T ss_dssp             EECTTSSCS
T ss_pred             Eeccccccc
Confidence            999998654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.91  E-value=5.9e-06  Score=82.11  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=45.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCcccc------ceeeeceeEEEec---------------CCceeEEEEEEeCCC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRA------TIGVDFALKVLSW---------------DHETIIRLQLWDIAG  517 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~------TigiDf~~ktV~v---------------dge~~vkLqIwDTpG  517 (663)
                      +||+|||.++||||||+|.+.+........+      .+|+-+......+               .+.....++|+|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999987554333333      2232211111000               011236799999999


Q ss_pred             ccc----hhhhHHHH---HhcCcEEEEEEeCCC
Q psy4094         518 QER----FGNMTRVY---YKEAVGAFIVFDVTR  543 (663)
Q Consensus       518 QEr----frsl~~~~---~r~ADgaILVyDVTd  543 (663)
                      --.    -..+...+   ++++|++|+|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            432    12233333   468999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00041  Score=67.36  Aligned_cols=84  Identities=20%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             HhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEE
Q psy4094         529 YKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-NFSGWFE  606 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-g~i~ffE  606 (663)
                      +.+.|.+++|+++.++. +...+..|+.....       .+++.+||.||+||.+..   ..+....+...+ ...+++.
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~-------~~i~pvIvlnK~DL~~~~---~~~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK-------NELETVMVINKMDLYDED---DLRKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHH---HHHHHHHHHHHHTTTSCEEE
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEeCcccCCHH---HHHHHHHhhcccccceeEEE
Confidence            46899999999998864 57777888776663       569999999999996532   223344444433 3357899


Q ss_pred             EeCCCCcCHHHHHHHH
Q psy4094         607 TSAKDNINIDDAAKTL  622 (663)
Q Consensus       607 tSAKtGeNVeELFe~I  622 (663)
                      +||+++.++++|..++
T Consensus        78 vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          78 TSAKTGMGIEELKEYL   93 (225)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             eccccchhHhhHHHHh
Confidence            9999999999988764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.10  E-value=0.00034  Score=68.45  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCC
Q psy4094         523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS  602 (663)
Q Consensus       523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i  602 (663)
                      ......+..+|++|+|.|+.++.+..+-  ++..+.        .+.|+|||.||+||.+..   ..+...+++...+ .
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~--------~~Kp~IlVlNK~DLv~~~---~~~~w~~~f~~~~-~   72 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL--------KNKPRIMLLNKADKADAA---VTQQWKEHFENQG-I   72 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC--------SSSCEEEEEECGGGSCHH---HHHHHHHHHHTTT-C
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH--------cCCCeEEEEECccCCchH---HHHHHHHHHHhcC-C
Confidence            3445678999999999999987765431  222222        147999999999986532   2223333334444 4


Q ss_pred             eEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094         603 GWFETSAKDNINIDDAAKTLVQKILENDK  631 (663)
Q Consensus       603 ~ffEtSAKtGeNVeELFe~IIr~Ile~~k  631 (663)
                      .++.+|+.++.++.++...+.+.+.....
T Consensus        73 ~~i~isa~~~~~~~~~~~~~~~~l~~~~~  101 (273)
T d1puja_          73 RSLSINSVNGQGLNQIVPASKEILQEKFD  101 (273)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHHHH
T ss_pred             ccceeecccCCCccccchhhhhhhhhhhh
Confidence            68999999999999888888776655433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.02  E-value=0.00036  Score=68.20  Aligned_cols=56  Identities=23%  Similarity=0.315  Sum_probs=35.4

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ  518 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ  518 (663)
                      ..++|+|||.++||||||+|++.+.... ....++++-+..  .+..+.    .+.++||||-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~----~~~l~DTPGi  167 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK----ELELLDTPGI  167 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT----TEEEEECCCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC----CeEEecCCCc
Confidence            4589999999999999999999986543 344455554432  233333    3889999995

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0053  Score=58.14  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=39.8

Q ss_pred             CcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeEEEEeC
Q psy4094         532 AVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGWFETSA  609 (663)
Q Consensus       532 ADgaILVyDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~ffEtSA  609 (663)
                      .+++|.|+|+...... .....+..+|.    .      .=+||.||+|+..+.     +.+++..+..+ ..++++++ 
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~----~------AD~ivlNK~Dl~~~~-----~~~~~~l~~lNP~a~Ii~~~-  185 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVG----Y------ADRILLTKTDVAGEA-----EKLHERLARINARAPVYTVT-  185 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHH----T------CSEEEEECTTTCSCT-----HHHHHHHHHHCSSSCEEECC-
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHH----h------CCcccccccccccHH-----HHHHHHHHHHhCCCeEEEee-
Confidence            5788899998764322 11122333343    1      126899999997532     34555555554 34566654 


Q ss_pred             CCCcCHHHHH
Q psy4094         610 KDNINIDDAA  619 (663)
Q Consensus       610 KtGeNVeELF  619 (663)
                      .-...+..+|
T Consensus       186 ~g~v~~~~ll  195 (222)
T d1nija1         186 HGDIDLGLLF  195 (222)
T ss_dssp             SSCCCGGGGS
T ss_pred             CCccCHHHhh
Confidence            2234555554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.74  E-value=0.00044  Score=66.10  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             EEEEEEeCCCccchhh----hHHHHHh--------cCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q psy4094         508 IRLQLWDIAGQERFGN----MTRVYYK--------EAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLL  574 (663)
Q Consensus       508 vkLqIwDTpGQErfrs----l~~~~~r--------~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILV  574 (663)
                      +.+.|+||+|...+..    .+..+.+        ..+-++||.|.+... ....+...+..+.           +-=++
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-----------~~~lI  157 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-----------LTGVI  157 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-----------CSEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-----------CceEE
Confidence            4689999999543321    1222221        346788999998654 3444444433332           11478


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH----HHHHHHHH
Q psy4094         575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA----KTLVQKIL  627 (663)
Q Consensus       575 GNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF----e~IIr~Il  627 (663)
                      .+|.|.....     -.+..++...+. ++.+++.  |++.+++.    +++++.|+
T Consensus       158 ~TKlDet~~~-----G~~l~~~~~~~~-Pi~~i~~--Gq~p~Dl~~~~~~~l~~~ll  206 (207)
T d1okkd2         158 VTKLDGTAKG-----GVLIPIVRTLKV-PIKFVGV--GEGPDDLQPFDPEAFVEALL  206 (207)
T ss_dssp             EECTTSSCCC-----TTHHHHHHHHCC-CEEEEEC--SSSTTCEEECCHHHHHHHHT
T ss_pred             EeccCCCCCc-----cHHHHHHHHHCC-CEEEEeC--CCChHhCccCCHHHHHHHHh
Confidence            8999964422     334566777775 6767763  55555543    44444443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.64  E-value=0.0012  Score=63.01  Aligned_cols=102  Identities=17%  Similarity=0.110  Sum_probs=54.3

Q ss_pred             EEEEEEeCCCccchh----hhHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP  581 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~  581 (663)
                      +.+.||||+|...+.    ..+..+  ..+.+-++||.|.+....  .+ .....+...+..       -=++.+|.|-.
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~-~~~~~f~~~~~~-------~~~I~TKlDe~  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--AL-SVARAFDEKVGV-------TGLVLTKLDGD  162 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HH-HHHHHHHHHTCC-------CEEEEECGGGC
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HH-HHHHHHHhhCCC-------CeeEEeecCcc
Confidence            468999999943221    122222  345688999999876532  22 233333332211       13888999954


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH----HHHHHHHHH
Q psy4094         582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA----AKTLVQKIL  627 (663)
Q Consensus       582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL----Fe~IIr~Il  627 (663)
                      .     ..-.+..++...+. ++.+++  .|++.+++    -+++++.|+
T Consensus       163 ~-----~~G~~l~~~~~~~~-Pi~~i~--~Gq~pedl~~~~~~~l~~~lL  204 (207)
T d1ls1a2         163 A-----RGGAALSARHVTGK-PIYFAG--VSEKPEGLEPFYPERLAGRIL  204 (207)
T ss_dssp             S-----SCHHHHHHHHHHCC-CEEEEC--------CCEECCHHHHHHHHT
T ss_pred             c-----cchHHHHHHHHHCC-CEEEEe--CCCChhhcccCCHHHHHHHHh
Confidence            3     23556677777775 666665  34445443    244555554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.00063  Score=66.02  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=36.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC------ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr  522 (663)
                      ..+|+|.+|||||||+|+++++....      ....+-........+.++++    -.|+||||-..|.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g----g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG----GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS----CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC----cEEEeCCcccccc
Confidence            67999999999999999998653221      11111112223344555433    3599999986653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0034  Score=60.06  Aligned_cols=92  Identities=17%  Similarity=0.086  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCccchh----hhHHHH---Hh-----cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVY---YK-----EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA  575 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~---~r-----~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG  575 (663)
                      +.+.|+||+|...+.    ..+..+   +.     ..+-.+||.|.+...  +.+......+.. +       -+-=++.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~-~-------~~~~lIl  161 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEA-V-------GLTGITL  161 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHH-S-------CCCEEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhc-c-------CCceEEE
Confidence            358999999943221    122222   22     145788999987542  233333332221 1       1224888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094         576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD  617 (663)
Q Consensus       576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE  617 (663)
                      +|.|-...     .-.+..++...+. ++.+++  .|++|++
T Consensus       162 TKlDe~~~-----~G~~l~~~~~~~~-Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         162 TKLDGTAK-----GGVIFSVADQFGI-PIRYIG--VGERIED  195 (211)
T ss_dssp             ECCTTCTT-----TTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred             eecCCCCC-----ccHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence            99996442     3456667777885 777776  5766654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.0013  Score=63.09  Aligned_cols=93  Identities=15%  Similarity=0.063  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCccchh----hhHHHHHhc--------CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094         508 IRLQLWDIAGQERFG----NMTRVYYKE--------AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA  575 (663)
Q Consensus       508 vkLqIwDTpGQErfr----sl~~~~~r~--------ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG  575 (663)
                      +.+.|+||+|...+.    ..+..+...        .+-.+||.|.+..  .+.+......+.. +       -+-=+|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~-~-------~~~~lI~  163 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-V-------NVTGIIL  163 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-S-------CCCEEEE
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccc-c-------CCceEEE
Confidence            468999999943222    112222221        3568899998753  3333333333332 1       1224888


Q ss_pred             eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      +|.|-...     .-.+..++...+. ++.+++  +|++|+++
T Consensus       164 TKlDe~~~-----~G~~l~~~~~~~~-Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         164 TKLDGTAK-----GGITLAIARELGI-PIKFIG--VGEKAEDL  198 (213)
T ss_dssp             ECGGGCSC-----TTHHHHHHHHHCC-CEEEEE--CSSSGGGE
T ss_pred             ecccCCCc-----ccHHHHHHHHHCC-CEEEEe--CCCCcccC
Confidence            99996432     2455667777775 777776  46666553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.00046  Score=67.28  Aligned_cols=84  Identities=15%  Similarity=0.233  Sum_probs=61.5

Q ss_pred             HhcCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHcCCCeE
Q psy4094         529 YKEAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI---KEHNFSGW  604 (663)
Q Consensus       529 ~r~ADgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla---k~~g~i~f  604 (663)
                      ..+.|.+++|+++.++ -++..+..|+....       ..+++.|||.||+||..+.  ...+.+..+.   ...|. ++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~-------~~~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~y~~~g~-~v   77 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-------ANDIQPIICITKMDLIEDQ--DTEDTIQAYAEDYRNIGY-DV   77 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHH-------TTTCEEEEEEECGGGCCCH--HHHHHHHHHHHHHHHHTC-CE
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHH-------HcCCCEEEEEecccccccH--HHHHHHHHHHHHHhhccc-cc
Confidence            4689999999999886 46788888877666       3578999999999997632  1122233333   33464 79


Q ss_pred             EEEeCCCCcCHHHHHHHH
Q psy4094         605 FETSAKDNINIDDAAKTL  622 (663)
Q Consensus       605 fEtSAKtGeNVeELFe~I  622 (663)
                      +.+||+++.|+++|..++
T Consensus        78 ~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          78 YLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             EECCHHHHTTCTTTGGGG
T ss_pred             eeeecCChhHHHHHHHhh
Confidence            999999999998877653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.36  E-value=0.007  Score=57.72  Aligned_cols=93  Identities=15%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCccchh------hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094         508 IRLQLWDIAGQERFG------NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD  579 (663)
Q Consensus       508 vkLqIwDTpGQErfr------sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD  579 (663)
                      +.+.|+||+|...+.      ..+..+.  ...+-++||.|.+....  .+......+.. +      ++ --+|.+|.|
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~-~------~~-~~lI~TKlD  164 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA-S------KI-GTIIITKMD  164 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH-C------TT-EEEEEECTT
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc-c------Cc-ceEEEeccc
Confidence            468999999953222      1112222  23567889999886432  22222222221 1      12 237799999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094         580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA  618 (663)
Q Consensus       580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL  618 (663)
                      ...     ..-.+..++...++ ++.+++  .|++|++|
T Consensus       165 et~-----~~G~~l~~~~~~~l-Pi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         165 GTA-----KGGGALSAVAATGA-TIKFIG--TGEKIDEL  195 (211)
T ss_dssp             SCS-----CHHHHHHHHHTTTC-CEEEEE--CSSSTTCE
T ss_pred             CCC-----cccHHHHHHHHHCc-CEEEEe--CCCCcccC
Confidence            643     34566777777775 777776  47777553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.15  E-value=0.00072  Score=65.83  Aligned_cols=58  Identities=14%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCCCC------ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFFSP------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG  522 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~fse------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr  522 (663)
                      ..+|+|.+|||||||+|+++++....      ....+-........+..++.     .|+||||-..|.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg-----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG-----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE-----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC-----EEEECCcccccc
Confidence            57899999999999999998753211      11111001111122334543     378999987664

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.92  E-value=0.0019  Score=56.83  Aligned_cols=22  Identities=45%  Similarity=0.842  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999986

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0022  Score=55.41  Aligned_cols=22  Identities=14%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -+|+|+|.+|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.055  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.461  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .=|+|+|.+|+|||||+.+++.
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.02  E-value=0.0049  Score=53.27  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+|+|+|.+||||||+++.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.79  E-value=0.033  Score=50.67  Aligned_cols=76  Identities=11%  Similarity=0.106  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGIA  586 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~~  586 (663)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..++..+..++..+.+       .+++++ +|.|+.|....  .
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~-------~~~~~~giv~N~~~~~~~--~  179 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK-------AGLAILGFVLNRYGRSDR--D  179 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH-------TTCEEEEEEEEEETSCTT--C
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh-------hhhhhhhhhhcccccccc--h
Confidence            6789999997653  33444577899999999764 4566666666666653       346766 89999986543  2


Q ss_pred             CCHHHHHHH
Q psy4094         587 NNPAKIDEF  595 (663)
Q Consensus       587 Vs~eei~ql  595 (663)
                      +..+..+.+
T Consensus       180 ~~~~~~~~~  188 (237)
T d1g3qa_         180 IPPEAAEDV  188 (237)
T ss_dssp             CCHHHHHHH
T ss_pred             hhhHHHHhh
Confidence            444444433

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.73  E-value=0.0089  Score=51.85  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..+|+|+|.+||||||+++.|..
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            37999999999999999988865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0084  Score=51.69  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|.+|+|||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.047  Score=53.54  Aligned_cols=93  Identities=11%  Similarity=0.011  Sum_probs=55.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-----ccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------h-h
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-----HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------G-N  523 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-----e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------r-s  523 (663)
                      ...=|.|+|..++|||+|+|++++..+.-     ...-|.|+-.....+....  ...+.++||-|....       . .
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~--~~~~~~lDteG~~~~~~~~~~~~~~  108 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKP--GHILVLLDTEGLGDVEKGDNQNDSW  108 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSST--TCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCC--CceEEEEecccccccccccchhHHH
Confidence            35678999999999999999999865322     2234566544444443322  467899999985321       1 1


Q ss_pred             hHHHHHhcCcEEEE-EEeCCCcccHHHHH
Q psy4094         524 MTRVYYKEAVGAFI-VFDVTRAATFDAVL  551 (663)
Q Consensus       524 l~~~~~r~ADgaIL-VyDVTd~~SFe~L~  551 (663)
                      +....+.-++++|+ ++...+...++.+.
T Consensus       109 i~~l~~llSs~~i~N~~~~~~~~~l~~L~  137 (277)
T d1f5na2         109 IFALAVLLSSTFVYNSIGTINQQAMDQLY  137 (277)
T ss_dssp             HHHHHHHHCSEEEEEEESCSSHHHHHTTH
T ss_pred             HHHHHHHHhCEEEEeccccCcHHHHHHHH
Confidence            12222234666655 55545555555443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.0096  Score=50.10  Aligned_cols=21  Identities=33%  Similarity=0.752  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.21  E-value=0.012  Score=51.93  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||++..+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.17  E-value=0.012  Score=50.27  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|.|.+|+|||||+++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.06  E-value=0.013  Score=50.14  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|.|.+||||||+++++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.75  E-value=0.019  Score=52.36  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..++|+|+|.+|+||||+...+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.69  E-value=0.017  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||++..+..
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6999999999999999988864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.69  E-value=0.068  Score=50.30  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCccchhh-hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGN-MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKEGI  585 (663)
Q Consensus       508 vkLqIwDTpGQErfrs-l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~der~  585 (663)
                      +.+.++|+++...... .......-||.++++.+. +..++..+...+..+.....   ..++.+ -+|.|+.+....  
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~---~~~~~~~~vv~N~~~~~~~--  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAK---SGGVRLGGIICNSRKVANE--  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBT---TBBCEEEEEEEECCSSSCC--
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhcc---ccceeccceEEeeecCCCc--
Confidence            5689999987543222 233334558988888866 45667666666555554321   223443 378899876442  


Q ss_pred             CCCHHHHHHHHHHcCC
Q psy4094         586 ANNPAKIDEFIKEHNF  601 (663)
Q Consensus       586 ~Vs~eei~qlak~~g~  601 (663)
                         .+.+.++++.++.
T Consensus       190 ---~~~~~~~~~~~~~  202 (269)
T d1cp2a_         190 ---YELLDAFAKELGS  202 (269)
T ss_dssp             ---HHHHHHHHHHHTC
T ss_pred             ---cchhhhhHhhcCC
Confidence               3566777777775

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.69  E-value=0.017  Score=51.38  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||++..+..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.017  Score=49.64  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|.+|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.49  E-value=0.019  Score=51.23  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||++..|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.021  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +||+|+|.+|+||||++.++..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.32  E-value=0.051  Score=54.36  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=50.0

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV  538 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV  538 (663)
                      .+|+|.|..|+|||||++.++.........-++. |...  +.+...  ..+.-+...+...+..+....++.---.|+|
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE-d~~E--l~l~~~--~~~~~~~~~~~~~~~~ll~~~lR~~pd~iiv  241 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE-DTEE--IVFKHH--KNYTQLFFGGNITSADCLKSCLRMRPDRIIL  241 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE-SSCC--CCCSSC--SSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeecc-chhh--hhcccc--cccceeccccchhHHHHHHHHhccCCCcccC
Confidence            4799999999999999999986443333222322 1111  122211  0122344455556777777778776666777


Q ss_pred             EeCCCcccH
Q psy4094         539 FDVTRAATF  547 (663)
Q Consensus       539 yDVTd~~SF  547 (663)
                      --+.+.+.+
T Consensus       242 gEiR~~ea~  250 (323)
T d1g6oa_         242 GELRSSEAY  250 (323)
T ss_dssp             SCCCSTHHH
T ss_pred             CccCchhHH
Confidence            777655443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.29  E-value=0.02  Score=51.04  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.4

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .=|+|+|.+|||||||++++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.27  E-value=0.019  Score=51.59  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||++..+..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.15  E-value=0.06  Score=49.13  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .-|+|-|+-|+|||||++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            45888999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.08  E-value=0.024  Score=50.60  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ++|+|+|.+|+||||++..+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.74  E-value=0.036  Score=49.62  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..|+|+|.+|+||||++.++..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.72  E-value=0.47  Score=43.23  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|.|++|+||||+++.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.64  E-value=0.033  Score=48.27  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=17.0

Q ss_pred             EEE-EEeCCCCCHHHHHHHHH
Q psy4094         460 KIL-VIGELGAGKTSIIKRYV  479 (663)
Q Consensus       460 KIV-VLGd~GVGKTSLInrLl  479 (663)
                      ||+ |.|.+||||||+++.+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            555 56999999999998885

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.64  E-value=0.023  Score=50.03  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.63  E-value=0.04  Score=47.13  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -+-|.|+|.+|+||||+.+.+..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            37799999999999999988763

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.03  Score=50.63  Aligned_cols=21  Identities=29%  Similarity=0.692  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|+|++||||+||+++++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.41  E-value=0.033  Score=47.96  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=17.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl  479 (663)
                      -|+|.|.+||||||+++.+.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999998875

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.34  E-value=0.088  Score=50.25  Aligned_cols=114  Identities=12%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCccchhhhHHHHH-hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYY-KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGI  585 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~-r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~  585 (663)
                      +.+.++|+++..........+. ..++.++++.. .+..++..+...+..+....   ...++.+. +|.|+.+...   
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~---~~~~~~~~gvv~n~~~~~~---  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYA---NSGSVRLGGLICNSRNTDR---  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHH---TTSCCEEEEEEEECCCCTT---
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhh---hcccccccceeehhhcchh---
Confidence            5678999987653333333322 34676666654 34455666655555554432   12345543 8889876422   


Q ss_pred             CCCHHHHHHHHHHcCCCeEEEE---------eCCCCc---------CHHHHHHHHHHHHHhhhh
Q psy4094         586 ANNPAKIDEFIKEHNFSGWFET---------SAKDNI---------NIDDAAKTLVQKILENDK  631 (663)
Q Consensus       586 ~Vs~eei~qlak~~g~i~ffEt---------SAKtGe---------NVeELFe~IIr~Ile~~k  631 (663)
                        ..+...+++..++. .++.+         +...|.         ..-+-|..|++.|+++..
T Consensus       192 --~~~~~~~~~~~~g~-~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~  252 (289)
T d2afhe1         192 --EDELIIALANKLGT-QMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKL  252 (289)
T ss_dssp             --HHHHHHHHHHHHTS-CEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred             --hHHHHHHHHHHcCC-eEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCC
Confidence              23456677777774 44432         111122         334457777777776544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.32  E-value=0.034  Score=48.85  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=18.0

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |.|+|..|+|||||+.+++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.00  E-value=0.037  Score=49.43  Aligned_cols=22  Identities=14%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      =|+|+|++||||+||++.++..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999998753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.96  E-value=0.045  Score=47.14  Aligned_cols=20  Identities=30%  Similarity=0.619  Sum_probs=17.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|.|.+|+||||+++.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.04  Score=47.51  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      =|+|+|.+|+||||+++.+..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467799999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.047  Score=48.72  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|+|++|+||||++.++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.76  E-value=0.039  Score=48.75  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|.+|+||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988854

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.71  E-value=0.021  Score=53.41  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+-|.|.|.+|+|||||.+.|..
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988863

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.70  E-value=0.042  Score=49.97  Aligned_cols=20  Identities=30%  Similarity=0.725  Sum_probs=18.5

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|+|++||||+||+++|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.69  E-value=0.045  Score=46.85  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=17.6

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      |+|.|.+|+||||+++.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            555699999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.60  E-value=0.04  Score=50.94  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094         459 YKILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .-|+|.|++|+|||+|+..+.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.047  Score=49.56  Aligned_cols=20  Identities=20%  Similarity=0.581  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|+|++|+||+||+++++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999985

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.35  E-value=0.039  Score=56.73  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=17.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHH
Q psy4094         460 KILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLl  479 (663)
                      +++|||++|||||+|+..|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            68999999999999997665

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.29  E-value=0.044  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|+.|+|||||++.+++-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5889999999999999988763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.99  E-value=0.077  Score=46.36  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+-|+|-|.+|+|||||+++|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999863

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.99  E-value=0.062  Score=49.31  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .++|.|++|+||||+++.++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999988864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.90  E-value=0.056  Score=48.47  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|++|+||||++..+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.86  E-value=0.058  Score=49.17  Aligned_cols=21  Identities=43%  Similarity=0.498  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|.|++|+|||+|+.+++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.73  E-value=0.077  Score=48.44  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|.|++|+||||++..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.062  Score=50.03  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      =|+|+|++||||+||+++++..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=90.52  E-value=0.065  Score=47.24  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+||||||+.+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999988853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=0.062  Score=51.78  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|..|+|||||++.+++
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999988876

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.072  Score=50.11  Aligned_cols=21  Identities=38%  Similarity=0.673  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +++|||++|||||+++..+..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            899999999999999988874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=90.32  E-value=0.069  Score=49.26  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||||++.+...
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.12  E-value=0.076  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|+|+.|+|||||++.+++-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            7999999999999999988863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=90.08  E-value=0.07  Score=51.32  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|+.|+|||||++.+++
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999988875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.08  E-value=0.075  Score=52.06  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +++|||++|||||+|+..|..
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            899999999999999998874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.04  E-value=0.073  Score=51.52  Aligned_cols=21  Identities=24%  Similarity=0.529  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|.+|+|||||++.+++
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            799999999999999988876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.94  E-value=0.075  Score=51.10  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|++|+|||||++.+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999998875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.80  E-value=0.083  Score=47.42  Aligned_cols=21  Identities=33%  Similarity=0.581  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|+|.+|+||||++.++..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.77  E-value=0.079  Score=51.30  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4679999999999999988863

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.078  Score=51.23  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|||..|+|||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            899999999999999988766

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.55  E-value=0.075  Score=51.01  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|++|+|||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            689999999999999987765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=89.42  E-value=0.086  Score=48.46  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+++.|++|+|||+|++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999998875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.29  E-value=0.09  Score=50.78  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5899999999999999988763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.054  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +-|.|+|.+|+|||||.+.+..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999998864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.98  E-value=0.11  Score=47.36  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||++++.+...
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=88.66  E-value=0.076  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|+|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            689999999999999999887

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=88.62  E-value=0.095  Score=50.28  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999988874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=88.45  E-value=0.1  Score=50.38  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            6899999999999999888763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=88.38  E-value=0.11  Score=50.10  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999888763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=88.17  E-value=0.11  Score=49.88  Aligned_cols=22  Identities=32%  Similarity=0.381  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -+.|+|+.|+|||||++.+.+-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.2  Score=42.92  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQFF  483 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~f  483 (663)
                      =++|.|++|+|||+|+.+|+.+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999986543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.78  E-value=0.14  Score=47.07  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|.|++|+||||+++.++..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.74  E-value=0.15  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +.|+|-|++||||||++..+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999988864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=87.57  E-value=0.089  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|++|+|||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999988874

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.51  E-value=4.8  Score=35.60  Aligned_cols=63  Identities=13%  Similarity=0.070  Sum_probs=39.5

Q ss_pred             EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCC
Q psy4094         508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQ  580 (663)
Q Consensus       508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL  580 (663)
                      +.+.|+|+++...  ......+..+|.+++|.... ..++..+...+..+...       +.++ -+|.|+.+-
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~iv~N~~~~  173 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-------GTKVLGVVVNRITT  173 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-------TCEEEEEEEEEECT
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc-------cccccccccccccc
Confidence            4578999988653  34445667799999998764 34444544444444432       2343 478999863

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.43  E-value=0.14  Score=46.84  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|.|++|+|||+|++.++..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999988753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.30  E-value=0.13  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|+|+.|+|||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            5899999999999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.03  E-value=0.089  Score=51.07  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|+|..|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            899999999999999977665

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.72  E-value=0.15  Score=49.54  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .++|+|++|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            689999999999999998876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.67  E-value=0.16  Score=45.15  Aligned_cols=24  Identities=25%  Similarity=0.652  Sum_probs=20.8

Q ss_pred             ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         457 FLYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       457 ~~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ..+-|+|-|..||||||+++.+..
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.62  E-value=0.13  Score=46.97  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=17.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHhC
Q psy4094         461 ILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg~  481 (663)
                      ++|.|++|+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            445699999999999988753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=0.2  Score=45.30  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      |-|+|-|..|+|||||.+.+..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.28  E-value=0.17  Score=49.50  Aligned_cols=21  Identities=48%  Similarity=0.789  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+++|++|||||.|++.+..
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.95  E-value=0.18  Score=45.15  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|.|++|+|||+|+.+|+-.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.77  E-value=0.2  Score=45.46  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      =++|.|++|+|||+|+.+|+.+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.21  Score=44.47  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      =|+|.|++|+||+|+...+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999999988864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.41  E-value=0.29  Score=46.49  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      ...|+|.|++|+|||+|++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            35799999999999999999875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.36  E-value=0.21  Score=45.27  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|.|++|+|||||++.++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999988753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.14  E-value=0.11  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6999999999999999888763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.11  E-value=0.21  Score=47.92  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=19.3

Q ss_pred             eEEEEEeCCCCCHHHHHHHHHh
Q psy4094         459 YKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       459 ~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .-|+|.|.+|+|||||+..+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=84.88  E-value=0.36  Score=42.71  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094         458 LYKILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       458 ~~KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .+-|+|.|..|+||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47799999999999999988764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.86  E-value=0.25  Score=44.02  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -|+|-|..||||||++..|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=0.24  Score=46.10  Aligned_cols=21  Identities=38%  Similarity=0.494  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|.|++|+|||++++.++.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999988764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.25  E-value=0.78  Score=41.94  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -+++.|++|+|||+++..|+.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=84.16  E-value=0.27  Score=43.73  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQF  482 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~~  482 (663)
                      =++|.|++|+|||+|+.+|+.+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            57889999999999999998643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.86  E-value=0.57  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -+.|.|++++|||+|+.+++.
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            578899999999999998873

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=82.88  E-value=0.26  Score=51.15  Aligned_cols=21  Identities=48%  Similarity=0.789  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      +|+|||+.|||||-|++++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999964

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=82.64  E-value=0.32  Score=46.31  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|.|++|+|||+|++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            599999999999999999986

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=82.41  E-value=0.35  Score=44.00  Aligned_cols=22  Identities=41%  Similarity=0.733  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|.|++|+|||+|+.+|+.+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5889999999999999999854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=0.39  Score=43.18  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      -++|.|++|+|||+|+.+|+.+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=81.46  E-value=0.41  Score=46.28  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      =+.|.|++|+|||+|+.+++.
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            578899999999999998875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.084  Score=45.10  Aligned_cols=19  Identities=32%  Similarity=0.564  Sum_probs=16.6

Q ss_pred             EEEEeCCCCCHHHHHHHHH
Q psy4094         461 ILVIGELGAGKTSIIKRYV  479 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLl  479 (663)
                      .+|+|..|+|||||+..+.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4578999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.29  E-value=0.38  Score=45.63  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCHHHHHHHHHhC
Q psy4094         460 KILVIGELGAGKTSIIKRYVHQ  481 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg~  481 (663)
                      .|+|.|++|+|||+|++.+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            6999999999999999988763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=80.99  E-value=0.23  Score=48.37  Aligned_cols=21  Identities=29%  Similarity=0.654  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      .|+|+|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            599999999999999999863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=80.94  E-value=0.43  Score=43.03  Aligned_cols=20  Identities=40%  Similarity=0.473  Sum_probs=17.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHh
Q psy4094         461 ILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       461 IVVLGd~GVGKTSLInrLlg  480 (663)
                      |+|-|..|+||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=80.25  E-value=0.46  Score=42.03  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCCHHHHHHHHHh
Q psy4094         460 KILVIGELGAGKTSIIKRYVH  480 (663)
Q Consensus       460 KIVVLGd~GVGKTSLInrLlg  480 (663)
                      -++|.|++|+|||+|+.+|+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            588899999999999988763