Psyllid ID: psy4162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATFKRTAVSVESE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEcccccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHcccHHHHHHHcccccccccccccccccccHcEEEEEEccccHHcHccHHHHHHHHHHcccccEEEEccccccccccHHHHHHcccccEEEEccccHHcHHHHHHHHHcccccEEEEccccccccccHHHHHHHHccccEEEcccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mseyyktsidpefkipldlsfQQIQSLDKVAVQklkpnvhrlgesppmlvgrydtrslwlsHNKISLVYGLDslvhrtildpdligwidlsfnniknvdknmftnfpnlkilYLHKNQIEEYLSVFVLRRVNSLrtlslygnpieKIREYRAVVSTMIpqlvtldsvfilpsekqetNALNAEIRSYLLPKYEKLEAATFKRTAVSVESE
Flexible Loop (DISEMBL)
mseyyktsidpefkIPLDLSFQQIQSLDKVAVQKLKpnvhrlgesppmlvGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNslrtlslygnpieKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLlpkyekleaatfkrtavsvese
Low Complexity Region (SEG)
MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATFKRTAVSVESE
Disordered region (IsUnstruct)
***********EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATF**********
Disordered Region (DISOPRED)
******T****EFKIPLDLSFQQIQSLDKVAVQKLKP**********MLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNAL******************************
Disordered Region (DISEMBL)
********IDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATF**********
Disordered Region (DISPRO)
***********EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEA*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLPKYEKLEAATFKRTAVSVESE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9DAK8	192	Leucine-rich repeat-conta	yes	N/A	0.742	0.812	0.331	8e-18
B6CZ61	192	Leucine-rich repeat-conta	yes	N/A	0.733	0.802	0.351	2e-17
Q5EAD8	192	Leucine-rich repeat-conta	yes	N/A	0.728	0.796	0.353	2e-17
B6CZ54	192	Leucine-rich repeat-conta	N/A	N/A	0.742	0.812	0.325	3e-17
B6CZ45	192	Leucine-rich repeat-conta	yes	N/A	0.742	0.812	0.325	3e-17
B6CZ40	192	Leucine-rich repeat-conta	yes	N/A	0.785	0.859	0.302	2e-16
Q96E66	192	Leucine-rich repeat-conta	yes	N/A	0.742	0.812	0.319	3e-16
Q4R6X9	523	Leucine-rich repeat-conta	N/A	N/A	0.485	0.195	0.346	2e-12
Q9H069	523	Leucine-rich repeat-conta	no	N/A	0.485	0.195	0.323	1e-10
Q9D5E4	523	Leucine-rich repeat-conta	no	N/A	0.485	0.195	0.315	1e-09

>sp|Q9DAK8|LRC51_MOUSE Leucine-rich repeat-containing protein 51 OS=Mus musculus GN=Lrrc51 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 7/163 (4%)

Query: 3   EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
           +Y  TS+    + PLD SF+ +Q +  +  ++ +  +  +  S     G+  T+SLWL++
Sbjct: 5   DYMNTSVQ---EPPLDYSFKSVQMVQDLVTEEPRTGLRPVRHSKS---GKSLTQSLWLNN 58

Query: 63  NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
           N ++ +   + +V + +  P+ + WIDLSFN++  +D  + T F NL +LYLH N I   
Sbjct: 59  NVLNDLKDFNQVVSQLLQHPENLAWIDLSFNDLTTIDP-VLTTFFNLSVLYLHGNGIHRL 117

Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             V  L  +  LR+L+L+GNPIE+ + YR  V   +P++ T D
Sbjct: 118 GEVNKLAVLPRLRSLTLHGNPIEEEKGYRQYVLCNLPRITTFD 160

Mus musculus (taxid: 10090)

>sp|B6CZ61|LRC51_RAT Leucine-rich repeat-containing protein 51 OS=Rattus norvegicus GN=Lrrc51 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 11/165 (6%)

Query: 3   EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLV--GRYDTRSLWL 60
           +Y  TS+    + PLD SF+ +Q      +Q L     R G  P      G+  T+SLWL
Sbjct: 5   DYMNTSVQ---EPPLDYSFKSVQ-----MIQDLISEEPRTGLRPVKYSKSGKSLTQSLWL 56

Query: 61  SHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIE 120
           ++N ++ +   + +V + +  P+ + WIDLSFN++  +D  + T F NL +LYLH N I 
Sbjct: 57  NNNVLNDLKDFNQVVSQLLQHPENLAWIDLSFNDLTTIDP-VLTTFFNLSVLYLHGNSIH 115

Query: 121 EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
               V  L  +  LR+L+L+GNPIE+ + YR  V   +P++ T D
Sbjct: 116 RLGEVNKLAVLPRLRSLTLHGNPIEEEKGYRQYVLCNLPRITTFD 160

Rattus norvegicus (taxid: 10116)

>sp|Q5EAD8|LRC51_BOVIN Leucine-rich repeat-containing protein 51 OS=Bos taurus GN=LRRC51 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 11/164 (6%)

Query: 4   YYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLV--GRYDTRSLWLS 61
           Y  TS+    + PLD SF+ I        Q L     R G  P      G+  T+SLWL+
Sbjct: 6   YMNTSVQ---EPPLDYSFRSIH-----VTQDLLSEEPRTGLRPVRHAKSGKSMTQSLWLN 57

Query: 62  HNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE 121
           +N ++ +   +  V + +  P+ + WIDLSFN++ ++D  + T F NL +LYLH N I+ 
Sbjct: 58  NNVLTDLRDFNHAVSQLLEHPENLAWIDLSFNDLTSIDP-VLTTFFNLSVLYLHGNSIQR 116

Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
              V  L  +  LR+L+L+GNPIE+ + YR  V   +P + T D
Sbjct: 117 LGEVNKLAALPRLRSLTLHGNPIEEEKGYRQYVLCTLPHITTFD 160

Bos taurus (taxid: 9913)

>sp|B6CZ54|LRC51_PROCO Leucine-rich repeat-containing protein 51 OS=Propithecus coquereli GN=LRTOMT PE=2 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 3   EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
           +Y  TS+    + PLD SF+ I  +  +  ++ +  +  L  S     G+  T+SLWL++
Sbjct: 5   DYMNTSVQ---EPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---GKSLTQSLWLNN 58

Query: 63  NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
           N ++ +   + +  + +  P+ + WIDLSFN++ ++D  + T F NL +LYLH N I+  
Sbjct: 59  NVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDP-VLTTFFNLSVLYLHGNSIQHL 117

Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             V  L  +  LR+L+L+GNP+E+ + YR  V   +P + T D
Sbjct: 118 GEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLPHITTFD 160

Propithecus coquereli (taxid: 379532)

>sp|B6CZ45|LRC51_MACMU Leucine-rich repeat-containing protein 51 OS=Macaca mulatta GN=LRTOMT PE=2 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 3   EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
           +Y  TS+    + PLD SF+ I  +  +  ++ +  +  L  S     G+  T+SLWL++
Sbjct: 5   DYMNTSVQ---EPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---GKSLTQSLWLNN 58

Query: 63  NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
           N ++ +   + +  + +  P+ + WIDLSFN++ ++D  + T F NL +LYLH N I+  
Sbjct: 59  NVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDP-VLTTFFNLSVLYLHGNSIQHL 117

Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             V  L  +  LR+L+L+GNP+E+ + YR  V   +P + T D
Sbjct: 118 GEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLPHITTFD 160

Macaca mulatta (taxid: 9544)

>sp|B6CZ40|LRC51_PANTR Leucine-rich repeat-containing protein 51 OS=Pan troglodytes GN=LRTOMT PE=2 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 96/172 (55%), Gaps = 7/172 (4%)

Query: 3   EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
           +Y  TS+    + PLD SF+ I  +  +  ++ +  +  L  S     G+  T+SLWL++
Sbjct: 5   DYMNTSVQ---EPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---GKSLTQSLWLNN 58

Query: 63  NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
           N ++ +   + +  + +  P+ + WIDLSFN++ ++D  + T F NL +LYLH N I+  
Sbjct: 59  NVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDP-VLTTFFNLSVLYLHGNSIQRL 117

Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174
             V  L  +  LR+L+L+GNP+E+ + YR  V   + ++ T D   +  +++
Sbjct: 118 GEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFAGVTKADR 169

Pan troglodytes (taxid: 9598)

>sp|Q96E66|LRC51_HUMAN Leucine-rich repeat-containing protein 51 OS=Homo sapiens GN=LRTOMT PE=2 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)

Query: 3   EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
           +Y  TS+    + PLD SF+ I  +  +  ++ +  +  L  S     G+  T+SLWL++
Sbjct: 5   DYMNTSVQ---EPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---GKSLTQSLWLNN 58

Query: 63  NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
           N ++ +   + +  + +  P+ + WIDLSFN++ ++D  + T F NL +LYLH N I+  
Sbjct: 59  NVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDP-VLTTFFNLSVLYLHGNSIQRL 117

Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             V  L  +  LR+L+L+GNP+E+ + YR  V   + ++ T D
Sbjct: 118 GEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFD 160

Homo sapiens (taxid: 9606)

>sp|Q4R6X9|LRC48_MACFA Leucine-rich repeat-containing protein 48 OS=Macaca fascicularis GN=LRRC48 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 28/130 (21%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNV----------DKNMFTN 105
           R L L +N I  + GL++L H        + W+DLSFNNI+ +          D ++F N
Sbjct: 68  RKLQLDNNIIEKIGGLENLTH--------LVWLDLSFNNIETIEGLDTLVNLEDLSLFNN 119

Query: 106 ----------FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS 155
                        L++L L  NQI+  +++  LRR   LRTLSL GNPI +  +Y+  + 
Sbjct: 120 RISKIDSLDALVKLQVLSLGNNQIDNMMNIVYLRRFQCLRTLSLSGNPISEAEDYKMFIC 179

Query: 156 TMIPQLVTLD 165
             +P LV LD
Sbjct: 180 AYLPDLVYLD 189

Macaca fascicularis (taxid: 9541)

>sp|Q9H069|LRC48_HUMAN Leucine-rich repeat-containing protein 48 OS=Homo sapiens GN=LRRC48 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 28/130 (21%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNV----------DKNMFTN 105
           R L L +N I  + GL++L H        + W+DLSFNNI+ +          D ++F N
Sbjct: 68  RKLQLDNNIIEKIEGLENLAH--------LVWLDLSFNNIETIEGLDTLVNLEDLSLFNN 119

Query: 106 ----------FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS 155
                        L++L L  N+I+  +++  LRR   LRTLSL  NPI +  +Y+  + 
Sbjct: 120 RISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFIC 179

Query: 156 TMIPQLVTLD 165
             +P L+ LD
Sbjct: 180 AYLPDLMYLD 189

Homo sapiens (taxid: 9606)

>sp|Q9D5E4|LRC48_MOUSE Leucine-rich repeat-containing protein 48 OS=Mus musculus GN=Lrrc48 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 28/130 (21%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK-NMFTNFPNL----- 109
           + L L++N I  + GL +L+H        + W+DLSFNNI+ ++  +   N  +L     
Sbjct: 68  KKLQLNNNIIERIEGLTNLIH--------LVWLDLSFNNIEAIEGLDTLVNLEDLSLSNN 119

Query: 110 --------------KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS 155
                         ++L L  NQI   +++  LRR   LRTLSL GNP+ +  EY+  + 
Sbjct: 120 RISKVDSLDALVKLQVLSLGNNQISNMMNIIYLRRFPCLRTLSLAGNPVSEAEEYKMFIY 179

Query: 156 TMIPQLVTLD 165
             +  LV LD
Sbjct: 180 AYLSDLVYLD 189

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
350426391	199	PREDICTED: leucine-rich repeat-containin	0.757	0.798	0.380	2e-26
340723692	199	PREDICTED: leucine-rich repeat-containin	0.757	0.798	0.380	2e-26
383857693	198	PREDICTED: leucine-rich repeat-containin	0.757	0.803	0.398	3e-26
322785982	199	hypothetical protein SINV_08636 [Solenop	0.757	0.798	0.411	8e-26
328777339	199	PREDICTED: leucine-rich repeat-containin	0.757	0.798	0.386	2e-25
380012173	199	PREDICTED: leucine-rich repeat-containin	0.757	0.798	0.386	4e-25
307189307	199	Leucine-rich repeat-containing protein 5	0.757	0.798	0.374	2e-23
332018797	201	Leucine-rich repeat-containing protein 5	0.757	0.791	0.386	2e-22
328711292	213	PREDICTED: leucine-rich repeat-containin	0.833	0.821	0.355	2e-19
443725101	180	hypothetical protein CAPTEDRAFT_164006 [	0.723	0.844	0.380	8e-19

>gi|350426391|ref|XP_003494424.1| PREDICTED: leucine-rich repeat-containing protein 51-like [Bombus impatiens]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 108/163 (66%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  +++++A ++  P   R G+ P      R+ T SLWLS+N ++ ++G ++L
Sbjct: 27  PLDLSFKKATTMNELANKR--PQAVRTGKIPLRTAADRFVTCSLWLSNNSLTSMFGFENL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
             + + DP  + W+DLSFN I+ +  ++ T+FPNLKI YLH N I +   V  L+++++L
Sbjct: 85  AQKLLDDPSHLSWLDLSFNEIEQIADDI-THFPNLKIFYLHGNNISDINDVVKLKKLSTL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           ++L+L+GNPIE +  YR  +  ++PQL TLD   +L +E+++ 
Sbjct: 144 KSLTLHGNPIENLPYYRGYIVHILPQLTTLDFSAVLSTERKKA 186

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723692|ref|XP_003400223.1| PREDICTED: leucine-rich repeat-containing protein 51-like [Bombus terrestris]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 108/163 (66%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  +++++A ++  P   R G+ P      R+ T SLWLS+N ++ ++G ++L
Sbjct: 27  PLDLSFKKATTMNELANKR--PQAVRTGKIPLRTAADRFVTCSLWLSNNSLTSMFGFENL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
             + + DP  + W+DLSFN I+ +  ++ T+FPNLKI YLH N I +   V  L+++++L
Sbjct: 85  AQKLLDDPSHLSWLDLSFNEIEQIADDI-THFPNLKIFYLHGNNISDINDVVKLKKLSTL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           ++L+L+GNPIE +  YR  +  ++PQL TLD   +L +E+++ 
Sbjct: 144 KSLTLHGNPIENLPYYRGYIVHILPQLTTLDFSAVLSTERKKA 186

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857693|ref|XP_003704338.1| PREDICTED: leucine-rich repeat-containing protein 51-like [Megachile rotundata]

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 107/163 (65%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPML-VGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF+   +L+++A ++  P   R G+ P      R+ T SLWLS+N ++ + G + L
Sbjct: 26  PLDLSFKNATTLNELAGKR--PQAVRTGKVPMRTSADRFMTCSLWLSNNLLTSMDGFEDL 83

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
           V + + DP L+ W+DLSFN I ++  ++  +FPNLKILYLH N+I +   +  L+ +++L
Sbjct: 84  VRKLLDDPKLLSWVDLSFNEISSIGDDI-VHFPNLKILYLHGNKISDINDIIKLKGLHNL 142

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           R LSL+GNP+E I  YR  +  ++PQLVT+D   ++ +E+++ 
Sbjct: 143 RCLSLHGNPVENIPGYRGYIVHILPQLVTIDFSQVISNERKKA 185

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785982|gb|EFZ12598.1| hypothetical protein SINV_08636 [Solenopsis invicta]

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 104/163 (63%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  +LD++  ++    V R G++P   L  RY T +LWLS+N +S + GL  L
Sbjct: 27  PLDLSFKKATTLDELMEKR--GQVIRTGKAPVRTLKDRYVTSTLWLSNNLLSSMEGLQRL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
             R + DP  + W+DLSFN IK + +++   F NLKILYLH N+I        LR++ +L
Sbjct: 85  AERVLDDPAYLSWLDLSFNEIKEIGEDV-EKFTNLKILYLHGNKITNIADSLKLRKLQNL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           R+L+L+GNPIE +  YR  +  ++PQL+ LD   ++ +EK++ 
Sbjct: 144 RSLTLHGNPIEDVPCYRGYIVHLLPQLLVLDFSPVIAAEKKKA 186

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777339|ref|XP_001120577.2| PREDICTED: leucine-rich repeat-containing protein 51-like isoform 1 [Apis mellifera] gi|328777341|ref|XP_003249321.1| PREDICTED: leucine-rich repeat-containing protein 51-like isoform 2 [Apis mellifera]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 102/163 (62%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  ++ ++A ++  P   R G+ P      R+ T SLWLS+N ++ + G +SL
Sbjct: 27  PLDLSFKRATTMHELANKR--PQSVRTGKIPLRTSADRFVTCSLWLSNNLLTSMDGFESL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
            H+ + DP+ + WIDLSFN IK +  ++   FPN+KI YLH N I     +  L+++ +L
Sbjct: 85  AHKVLDDPEHLSWIDLSFNKIKEIGDDI-VKFPNIKIFYLHGNNISNINDIVKLQKLQTL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           R+L+L+GNPIE +  YR  +   +PQL  LD   +L +E+++ 
Sbjct: 144 RSLTLHGNPIENLPYYRGYIVHTLPQLTALDFSAVLSTERKKA 186

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012173|ref|XP_003690161.1| PREDICTED: leucine-rich repeat-containing protein 51-like [Apis florea]

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 103/163 (63%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  +++++A ++  P   R G+ P      R+ T SLWLS+N ++ + G ++L
Sbjct: 27  PLDLSFKRATTMNELANKR--PQSVRTGKIPLRTSADRFVTCSLWLSNNLLTSMDGFETL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
           V + + DP+ + WIDLSFN IK +  ++   FPN+KI YLH N I     +  L+++ +L
Sbjct: 85  VQKVLDDPEHLSWIDLSFNKIKEIGDDI-VKFPNIKIFYLHGNNISNINDIVKLKKLQTL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           R+L+L+GNPIE +  YR  V   +PQL  LD   +L +E+++ 
Sbjct: 144 RSLTLHGNPIENLPYYRGYVVHTLPQLTALDFSAVLSTERKKA 186

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189307|gb|EFN73738.1| Leucine-rich repeat-containing protein 51 [Camponotus floridanus]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 104/163 (63%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  +++++  ++ +  + R G++P      RY T +LWLS+N ++ + GL  L
Sbjct: 27  PLDLSFRKATTMEELMEKRAQ--IIRTGKAPVRTFKDRYMTSTLWLSNNLLTSMEGLQRL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
           V + + DP  + W+DLSFN I  + +++   F NLKILYLH N+I        LR++ +L
Sbjct: 85  VDKVLNDPIYLSWLDLSFNEINEIGEDI-EKFINLKILYLHGNKISNIADTLRLRKLQNL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           R+L+L+GNPIE +  YR  +  ++PQL+ LD   ++ +EK++ 
Sbjct: 144 RSLTLHGNPIEDVPCYRGYIIHLLPQLLVLDFSPVIAAEKKKA 186

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018797|gb|EGI59358.1| Leucine-rich repeat-containing protein 51 [Acromyrmex echinatior]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 103/163 (63%), Gaps = 4/163 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP-PMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           PLDLSF++  ++D++  ++ +  + R G++P   L  RY T +LWLS+N++S + GL  L
Sbjct: 27  PLDLSFKKATTMDELMEKRAQ--IIRTGKAPVRTLKDRYITSTLWLSNNRLSSMEGLQRL 84

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
             R + +P  + W+DLSFN I  +       F NLKILYLH N+I     +  LR++ +L
Sbjct: 85  TDRVLDNPVYLSWLDLSFNEINEI-GEEIEKFTNLKILYLHGNKIANITDILKLRKLQNL 143

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQET 177
           R+L+L+GNPIE +  YR  +  ++PQL+ LD   ++ +EK++ 
Sbjct: 144 RSLTLHGNPIEDVPCYRGYIVHLLPQLLVLDFSPVIAAEKKKA 186

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711292|ref|XP_003244502.1| PREDICTED: leucine-rich repeat-containing protein 51-like [Acyrthosiphon pisum]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 107/180 (59%), Gaps = 5/180 (2%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESP--PMLVGRYDTRSLWLSHNKISLVYGLDS 73
           PLD S++ + SL+++   + +P   R+  +P   +   RY T S WL+ N +  V GL +
Sbjct: 21  PLDFSYRNLVSLEELNGNE-EPLPLRVRGAPKKSLKSNRYKTGSFWLNKNNLKNVNGLRN 79

Query: 74  LVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133
           L  R     D + W+DLS NN+ ++  + F  FPNL +LYLHKN I++++  + LR+++ 
Sbjct: 80  LADRLFEMADYLSWLDLSDNNLTSI-SDEFLLFPNLSMLYLHKNNIQDFVDSYKLRKLDK 138

Query: 134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK-QETNALNAEIRSYLLPKY 192
           LRTL+L+ NP+  +  YR+ V + +P L  LD V ++ SE+ Q+  +L+  +R  L   Y
Sbjct: 139 LRTLTLHKNPMCGLPCYRSTVISFLPNLRKLDHVVVVRSEREQDRKSLDKNVRERLTNAY 198

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443725101|gb|ELU12804.1| hypothetical protein CAPTEDRAFT_164006 [Capitella teleta]

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 11/163 (6%)

Query: 16  PLDLSFQQIQSLDKVAVQK----LKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGL 71
           PLD SF  I  L ++  ++    L  NV R  E      G+++ + L L++N+I+ + GL
Sbjct: 4   PLDFSFLSIAELTELETEEPRALLGKNVPRDEE------GKFNCKCLKLNNNQIADLKGL 57

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
              + + ILDP ++ WID+SFN +  +D  +F +FPNL+ILYLH NQI +   V  L  V
Sbjct: 58  LPTLTKIILDPSVLSWIDISFNELTRIDP-VFCDFPNLQILYLHGNQITDIKEVDKLAGV 116

Query: 132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK 174
            +L+ L L+GNPIE  + YR  V + + QL +LD   I  +++
Sbjct: 117 KNLKKLCLHGNPIETTKSYRWYVMSELHQLQSLDMSGITKADR 159

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
MGI|MGI:1916608	192	Lrrc51 "leucine rich repeat co	0.742	0.812	0.331	5.7e-20
RGD|1565856	192	Lrrc51 "leucine rich repeat co	0.742	0.812	0.331	9.2e-20
UNIPROTKB|Q96E66	192	LRTOMT "Leucine-rich repeat-co	0.742	0.812	0.319	1.7e-18
ZFIN|ZDB-GENE-060929-962	181	lrtomt "leucine rich transmemb	0.838	0.972	0.298	4.6e-18
RGD|1309150	523	Lrrc48 "leucine rich repeat co	0.657	0.263	0.356	4.9e-12
UNIPROTKB|F1N0Q0	522	LRRC48 "Uncharacterized protei	0.647	0.260	0.345	9.6e-11
ZFIN|ZDB-GENE-061103-349	513	lrrc48 "leucine rich repeat co	0.538	0.220	0.403	1.5e-10
UNIPROTKB|E2RI69	522	LRRC48 "Uncharacterized protei	0.476	0.191	0.367	2.6e-10
MGI|MGI:1921915	523	Lrrc48 "leucine rich repeat co	0.666	0.267	0.348	2.6e-10
ZFIN|ZDB-GENE-051113-288	345	ppp1r7 "protein phosphatase 1,	0.633	0.385	0.278	1.8e-07

MGI|MGI:1916608 Lrrc51 "leucine rich repeat containing 51" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 54/163 (33%), Positives = 92/163 (56%)

Query:     3 EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
             +Y  TS+      PLD SF+ +Q +  +  ++ +  +  +  S     G+  T+SLWL++
Sbjct:     5 DYMNTSVQEP---PLDYSFKSVQMVQDLVTEEPRTGLRPVRHSKS---GKSLTQSLWLNN 58

Query:    63 NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
             N ++ +   + +V + +  P+ + WIDLSFN++  +D  + T F NL +LYLH N I   
Sbjct:    59 NVLNDLKDFNQVVSQLLQHPENLAWIDLSFNDLTTIDP-VLTTFFNLSVLYLHGNGIHRL 117

Query:   123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
               V  L  +  LR+L+L+GNPIE+ + YR  V   +P++ T D
Sbjct:   118 GEVNKLAVLPRLRSLTLHGNPIEEEKGYRQYVLCNLPRITTFD 160

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1565856 Lrrc51 "leucine rich repeat containing 51" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 54/163 (33%), Positives = 92/163 (56%)

Query:     3 EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
             +Y  TS+      PLD SF+ +Q +  +  ++ +  +  +  S     G+  T+SLWL++
Sbjct:     5 DYMNTSVQEP---PLDYSFKSVQMIQDLISEEPRTGLRPVKYSKS---GKSLTQSLWLNN 58

Query:    63 NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
             N ++ +   + +V + +  P+ + WIDLSFN++  +D  + T F NL +LYLH N I   
Sbjct:    59 NVLNDLKDFNQVVSQLLQHPENLAWIDLSFNDLTTIDP-VLTTFFNLSVLYLHGNSIHRL 117

Query:   123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
               V  L  +  LR+L+L+GNPIE+ + YR  V   +P++ T D
Sbjct:   118 GEVNKLAVLPRLRSLTLHGNPIEEEKGYRQYVLCNLPRITTFD 160

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96E66 LRTOMT "Leucine-rich repeat-containing protein 51" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 52/163 (31%), Positives = 91/163 (55%)

Query:     3 EYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH 62
             +Y  TS+      PLD SF+ I  +  +  ++ +  +  L  S     G+  T+SLWL++
Sbjct:     5 DYMNTSVQEP---PLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKS---GKSLTQSLWLNN 58

Query:    63 NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
             N ++ +   + +  + +  P+ + WIDLSFN++ ++D  + T F NL +LYLH N I+  
Sbjct:    59 NVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDP-VLTTFFNLSVLYLHGNSIQRL 117

Query:   123 LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
               V  L  +  LR+L+L+GNP+E+ + YR  V   + ++ T D
Sbjct:   118 GEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFD 160

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-060929-962 lrtomt "leucine rich transmembrane and 0-methyltransferase domain containing" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 55/184 (29%), Positives = 93/184 (50%)

Query:    13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGR--YDTRSLWLSHNKISLVYG 70
             F   +D SF++I ++  V       + H     PP    +  + + S  L++N I  + G
Sbjct:     2 FGSSVDFSFKEINTISDVLSDVPNSSAH-----PPKRDSKKKFISMSFRLNNNSIKDLTG 56

Query:    71 LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
             L   +     +P  + W+DLSFN IK++D ++ T    L++LYLH N I+E   V  L  
Sbjct:    57 LMDTLSALFSEPTRLAWLDLSFNEIKHID-SVLTQLKELRLLYLHGNNIQELSEVDKLAV 115

Query:   131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSYLLP 190
             + SL T++L+GNPI   R+YRA +  M+P +  +D   +   E++ T+       ++   
Sbjct:   116 LPSLHTITLHGNPIVSERDYRAHLIAMLPHVKMIDFSAVTKQERELTSVWQKSKNTHKST 175

Query:   191 KYEK 194
              Y K
Sbjct:   176 GYSK 179

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1309150 Lrrc48 "leucine rich repeat containing 48" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 56/157 (35%), Positives = 80/157 (50%)

Query:    15 IPLDLSFQQIQSLDKV----AVQKLKPNVHRLGESPPMLVGRYDTRSLWL--SHNKISLV 68
             + L L FQ I  +D +     ++KL+ N + + E    L     T  +WL  S N I  +
Sbjct:    46 LALQLDFQNILRIDNLWQFENLRKLQLN-NNIIERIEGLENL--THLVWLDLSFNNIEAI 102

Query:    69 YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
              GLD+LV+   L+ DL     LS N I  +D        NL++L L  NQI   +++  L
Sbjct:   103 EGLDTLVN---LE-DL----SLSHNRISKIDS--LDPLVNLQVLSLGNNQINNMMNIIYL 152

Query:   129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             RR   LRTLSL GNP+ +  EY+  +   +P LV LD
Sbjct:   153 RRFPCLRTLSLSGNPVSEAEEYKVFIYAYLPDLVYLD 189

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|F1N0Q0 LRRC48 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 55/159 (34%), Positives = 82/159 (51%)

Query:    15 IPLDLSFQQIQSLDKV----AVQKLKPNVHRLGESPPMLVGRYDTRSLWL--SHNKISLV 68
             + L L FQ I  +D +    ++QKL+ + + + E    L     TR +WL  S N I  +
Sbjct:    45 VSLQLDFQNILRIDNLWQFESLQKLQLD-NNIIEKIEGLENL--TRLVWLDLSFNNIEAI 101

Query:    69 YGLDSLVHRTILDPDLIGWIDLS-FNN-IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
              GLD+LV+   L+       DLS FNN I  +D         L++L L  N I   +++ 
Sbjct:   102 EGLDTLVN---LE-------DLSLFNNRISKIDS--LDALVKLQVLSLGNNHIGNMMNII 149

Query:   127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
              LRR  +LRTLSL GNP+ +  +Y+  +   +P LV LD
Sbjct:   150 YLRRFKALRTLSLSGNPVAEDEDYKMFICAYLPDLVYLD 188

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-061103-349 lrrc48 "leucine rich repeat containing 48" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 52/129 (40%), Positives = 70/129 (54%)

Query:    55 TRSLWL--SHNKISLVYGLDSLVHRTILDPDLIGWIDLS-FNNIKNVDKNMFTNFPNLKI 111
             T   WL  S NKI ++ GL +LV             DLS FNN  +V +N+ T    L++
Sbjct:    78 TNLTWLDLSFNKIEVIEGLQTLVKLQ----------DLSLFNNRISVIENLDT-LQRLQV 126

Query:   112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP 171
             L L  N I +  +V  LRR  SLRTL+L GNPI +   Y+  VS  +P+LV LD   +L 
Sbjct:   127 LSLGNNSIAQLENVIYLRRFQSLRTLNLAGNPICEEDRYKTFVSAYLPELVYLD-YRLLD 185

Query:   172 SEKQET-NA 179
              + +ET NA
Sbjct:   186 EQTRETANA 194

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RI69 LRRC48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 47/128 (36%), Positives = 65/128 (50%)

Query:    58 LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNV----------DKNMFTN-- 105
             L L +N I  + GL+ LVH       L+ W+DLSFNNI+ +          D ++F N  
Sbjct:    70 LQLDNNIIEKIEGLEQLVH-------LV-WLDLSFNNIEAIEGLDTLVNLEDLSLFNNRI 121

Query:   106 --------FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTM 157
                        L++L L  NQI   +++  LRR   LRTLSL GNPI +  +Y+  V   
Sbjct:   122 SKIDSLDALVKLQVLSLGNNQIGNMMNIIYLRRFKDLRTLSLSGNPIAESEDYKMFVCAY 181

Query:   158 IPQLVTLD 165
             +P LV LD
Sbjct:   182 LPDLVYLD 189

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1921915 Lrrc48 "leucine rich repeat containing 48" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 54/155 (34%), Positives = 76/155 (49%)

Query:    15 IPLDLSFQQIQSLDKV----AVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG 70
             + L L FQ I  +D +     ++KL+ N + + E    L        L LS N I  + G
Sbjct:    46 LSLQLDFQNILRIDNLWQFENLKKLQLN-NNIIERIEGLTNLIHLVWLDLSFNNIEAIEG 104

Query:    71 LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
             LD+LV+   L+ DL     LS N I  VD         L++L L  NQI   +++  LRR
Sbjct:   105 LDTLVN---LE-DL----SLSNNRISKVDS--LDALVKLQVLSLGNNQISNMMNIIYLRR 154

Query:   131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
                LRTLSL GNP+ +  EY+  +   +  LV LD
Sbjct:   155 FPCLRTLSLAGNPVSEAEEYKMFIYAYLSDLVYLD 189

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-051113-288 ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 42/151 (27%), Positives = 79/151 (52%)

Query:    23 QIQSLD---KVAVQKLKPN-VHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRT 78
             Q+Q+LD    + V  ++ N + +L E    LV   + R L+LSHN I ++ GL++     
Sbjct:   207 QLQNLDGLHNLTVLSIQSNRITKL-EGLQNLV---NLRELYLSHNGIEVMEGLEN----- 257

Query:    79 ILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLS 138
                   +  +D++ N IK ++    ++  +LK  +++ NQIE +  +  L+    L T+ 
Sbjct:   258 ---NKKLSTLDIAANRIKKIEN--ISHLTDLKEFWMNDNQIENWADLDELKNAKGLETVY 312

Query:   139 LYGNPIEKIREYRAVVSTMIPQLVTLDSVFI 169
             L  NP++K  +YR  +   +P +  +D+ FI
Sbjct:   313 LERNPLQKDPQYRRKIMLALPSVRQIDATFI 343

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DAK8	LRC51_MOUSE	No assigned EC number	0.3312	0.7428	0.8125	yes	N/A
B6CZ40	LRC51_PANTR	No assigned EC number	0.3023	0.7857	0.8593	yes	N/A
B6CZ45	LRC51_MACMU	No assigned EC number	0.3251	0.7428	0.8125	yes	N/A
B6CZ61	LRC51_RAT	No assigned EC number	0.3515	0.7333	0.8020	yes	N/A
Q96E66	LRC51_HUMAN	No assigned EC number	0.3190	0.7428	0.8125	yes	N/A
Q5EAD8	LRC51_BOVIN	No assigned EC number	0.3536	0.7285	0.7968	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	210
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 88  IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
           +DLS N +  +    F   PNLK+L L  N +   +S      + SLR+L L GN +
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 107 PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            NL+ L L  NQI     +  L  + +L TL L GN I  +  
Sbjct: 1   TNLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.78
KOG4194|consensus	873		99.61
KOG4194|consensus	873		99.52
KOG1644|consensus	233		99.42
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
KOG4237|consensus	498		99.31
KOG0444|consensus	1255		99.3
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.27
KOG0617|consensus	264		99.27
KOG1259|consensus	490		99.22
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.22
KOG1259|consensus	490		99.2
KOG0618|consensus	1081		99.15
KOG0472|consensus	565		99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
KOG0617|consensus	264		99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG0444|consensus	1255		99.08
KOG0618|consensus	1081		99.08
KOG4237|consensus	498		99.06
KOG0472|consensus	565		99.01
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.96
KOG0532|consensus	722		98.86
PLN03150	623	hypothetical protein; Provisional	98.8
KOG1859|consensus	1096		98.79
KOG2123|consensus	388		98.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.75
PLN03150	623	hypothetical protein; Provisional	98.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.74
KOG1859|consensus	1096		98.6
KOG0532|consensus	722		98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.59
KOG2739|consensus	260		98.57
KOG2982|consensus	418		98.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.49
KOG3207|consensus	505		98.46
KOG0531|consensus	414		98.45
KOG1644|consensus	233		98.44
KOG4579|consensus	177		98.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.35
KOG4579|consensus	177		98.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.33
KOG3207|consensus	505		98.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.32
KOG0531|consensus	414		98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG2982|consensus	418		98.11
KOG4658|consensus	889		97.72
KOG4658|consensus	889		97.63
KOG3665|consensus	699		97.6
KOG1909|consensus	382		97.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
KOG1909|consensus	382		97.38
KOG3665|consensus	699		97.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.31
PRK15386	426	type III secretion protein GogB; Provisional	97.11
KOG2739|consensus	260		96.83
KOG2123|consensus	388		96.78
PRK15386	426	type III secretion protein GogB; Provisional	96.55
KOG3763|consensus	585		96.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.83
smart00370	26	LRR Leucine-rich repeats, outliers.	94.83
KOG2120|consensus	419		94.61
KOG0473|consensus	326		94.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.27
smart00370	26	LRR Leucine-rich repeats, outliers.	94.27
KOG0473|consensus	326		94.05
KOG3864|consensus	221		92.45
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	92.23
KOG1947|consensus	482		89.62
KOG1947|consensus	482		87.46
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.31
smart00446	26	LRRcap occurring C-terminal to leucine-rich repeat	85.71
KOG3864|consensus	221		85.38
KOG3763|consensus	585		80.46

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.78  E-value=1.5e-19  Score=132.94  Aligned_cols=143  Identities=31%  Similarity=0.426  Sum_probs=73.2

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++.+|.|+.+..... .+..                 |+.|++++|.|+.+++        +..++.|+.|++++|
T Consensus        21 ~~~L~L~~n~I~~Ie~L~~-~l~~-----------------L~~L~Ls~N~I~~l~~--------l~~L~~L~~L~L~~N   74 (175)
T PF14580_consen   21 LRELNLRGNQISTIENLGA-TLDK-----------------LEVLDLSNNQITKLEG--------LPGLPRLKTLDLSNN   74 (175)
T ss_dssp             ---------------S--T-T-TT-------------------EEE-TTS--S--TT------------TT--EEE--SS
T ss_pred             cccccccccccccccchhh-hhcC-----------------CCEEECCCCCCccccC--------ccChhhhhhcccCCC
Confidence            4569999999998877642 2345                 9999999999999976        455689999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +|+.+.......+++|+.|++++|+|..+..+..+..+++|+.|++.+||++..+.||..++..+|+|+.||...+...|
T Consensus        75 ~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~E  154 (175)
T PF14580_consen   75 RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEE  154 (175)
T ss_dssp             ---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred             CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHH
Confidence            99999765334689999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy4162         174 KQETNALNA  182 (210)
Q Consensus       174 ~~~~~~~~~  182 (210)
                      +..+..++.
T Consensus       155 R~~A~~~f~  163 (175)
T PF14580_consen  155 RQEAEKLFK  163 (175)
T ss_dssp             ---------
T ss_pred             hcccccccc
Confidence            998888776

>KOG4194|consensus

Probab=99.61  E-value=7.3e-16  Score=128.87  Aligned_cols=156  Identities=26%  Similarity=0.183  Sum_probs=133.0

Q ss_pred             CCCCCCcceeCCCCCccccchhhhcccCC-cccccCCCC---CC-C-CCCCCccEEEccCCccccccCCchhhhhccCCC
Q psy4162           9 IDPEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP   82 (210)
Q Consensus         9 ~~~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l   82 (210)
                      .-|-.+.+||+|+|.|.++....|.++++ ..+.++...   .+ + ....+++.|+|.+|.|+++..      ..+..+
T Consensus        75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s------e~L~~l  148 (873)
T KOG4194|consen   75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS------EELSAL  148 (873)
T ss_pred             cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccH------HHHHhH
Confidence            34556778999999999999999988888 333333333   23 3 445669999999999999987      888899


Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV  162 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~  162 (210)
                      +.|+.||||.|.|+.++...|+.-.+++.|+|++|+|+.+.. +.|..+.+|..|.|+.|.++.+|.   ..++++++|+
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~---r~Fk~L~~L~  224 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQ---RSFKRLPKLE  224 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCH---HHhhhcchhh
Confidence            999999999999999998888888999999999999999986 899999999999999999999998   6899999999


Q ss_pred             cccCCCCCHHHH
Q psy4162         163 TLDSVFILPSEK  174 (210)
Q Consensus       163 ~L~l~~~~~~~~  174 (210)
                      .||+..|.+..-
T Consensus       225 ~LdLnrN~iriv  236 (873)
T KOG4194|consen  225 SLDLNRNRIRIV  236 (873)
T ss_pred             hhhccccceeee
Confidence            999998876443

>KOG4194|consensus

Probab=99.52  E-value=1.7e-15  Score=126.75  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=14.8

Q ss_pred             cceeCCCCCccccchhhhcccCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP   37 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~   37 (210)
                      .+|.++.|+++.++...|.+++.
T Consensus       200 ~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  200 LTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             eeeecccCcccccCHHHhhhcch
Confidence            44667777777777766665544

>KOG1644|consensus

Probab=99.42  E-value=1.4e-13  Score=101.31  Aligned_cols=121  Identities=28%  Similarity=0.354  Sum_probs=111.8

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      ....+||++|.+..+..        |..++.|++|.+.+|+|+.+.+..-..+++|..|.+.+|.|..+.++..+..+|+
T Consensus        43 ~~d~iDLtdNdl~~l~~--------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccceecccccchhhccc--------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            47889999999999865        6667999999999999999999866667899999999999999998888999999


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNA  182 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  182 (210)
                      |+.|.+-+|++.....||..++..+|+|++||++++...||..+..|+.
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~  163 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFK  163 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999983

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=2.5e-13  Score=100.00  Aligned_cols=114  Identities=27%  Similarity=0.297  Sum_probs=49.5

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      .++.|+|++|.|+.+.+++       ..+.+|+.|++++|.|+.+..  +..++.|+.|++++|+|+.+.+ .....+++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~-------~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~   89 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLG-------ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISE-GLDKNLPN   89 (175)
T ss_dssp             ----------------S---------TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred             ccccccccccccccccchh-------hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence            4899999999999997643       135789999999999999986  8889999999999999999863 32346899


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHH
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA  179 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  179 (210)
                      |+.|++++|.|..+...  ..++.+++|+.|++.+||+.+......
T Consensus        90 L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~  133 (175)
T PF14580_consen   90 LQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRL  133 (175)
T ss_dssp             --EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHH
T ss_pred             CCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHH
Confidence            99999999999876553  357889999999999999987654443

>KOG4237|consensus

Probab=99.31  E-value=2.8e-14  Score=114.44  Aligned_cols=133  Identities=28%  Similarity=0.266  Sum_probs=110.7

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL   90 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L   90 (210)
                      |..++.+++..|+|+.+|+..|..++.                 |+.||||+|.|+.+.+      +.|.++.++..|.+
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~-----------------LRrLdLS~N~Is~I~p------~AF~GL~~l~~Lvl  122 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHR-----------------LRRLDLSKNNISFIAP------DAFKGLASLLSLVL  122 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhh-----------------hceecccccchhhcCh------HhhhhhHhhhHHHh
Confidence            335667888888888888888877777                 9999999999999887      88988888777666


Q ss_pred             cC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162          91 SF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus        91 s~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      -+ |+|+.++.+.|+.+..++.|.+.-|.+.-... +.+..++++..|.+.+|.+..++.   ..+..+..++.+++..|
T Consensus       123 yg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~---~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  123 YGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK---GTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             hcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc---ccccchhccchHhhhcC
Confidence            55 88999998889999999999888888888876 888899999999999999888876   46778888888888888


Q ss_pred             C
Q psy4162         170 L  170 (210)
Q Consensus       170 ~  170 (210)
                      +
T Consensus       199 p  199 (498)
T KOG4237|consen  199 P  199 (498)
T ss_pred             c
Confidence            7

>KOG0444|consensus

Probab=99.30  E-value=2e-13  Score=115.58  Aligned_cols=148  Identities=20%  Similarity=0.166  Sum_probs=99.4

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      .+.+|+|+|+++.+|...=. -.+ .++.++   +..++   +..|..|-.||||+|++..+|       .....+.+|+
T Consensus       105 Lt~lDLShNqL~EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP-------PQ~RRL~~Lq  176 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP-------PQIRRLSMLQ  176 (1255)
T ss_pred             ceeeecchhhhhhcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC-------HHHHHHhhhh
Confidence            34577777777777664210 122 111111   11111   144555777888888888877       4566677788


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccC--ccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIE--EYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      .|.|++|.+....-..++.+.+|..|.+++++-+  .+|  ..+.++.+|..++++.|.+..+|.    .+..+++|+.|
T Consensus       177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P--tsld~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrL  250 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP--TSLDDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRL  250 (1255)
T ss_pred             hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC--CchhhhhhhhhccccccCCCcchH----HHhhhhhhhee
Confidence            8888888777766555677777888888777533  343  556778888889999998888887    78888888889


Q ss_pred             cCCCCCHHHHH
Q psy4162         165 DSVFILPSEKQ  175 (210)
Q Consensus       165 ~l~~~~~~~~~  175 (210)
                      ++++|.+.+..
T Consensus       251 NLS~N~iteL~  261 (1255)
T KOG0444|consen  251 NLSGNKITELN  261 (1255)
T ss_pred             ccCcCceeeee
Confidence            99888876544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.27  E-value=1.4e-11  Score=113.33  Aligned_cols=91  Identities=21%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             hccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHH
Q psy4162          77 RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST  156 (210)
Q Consensus        77 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  156 (210)
                      ..+..+.+|+.|++++|++....+..++.+++|+.|++++|.+....+ ..++.+++|+.|++++|.+.+..+   ..+.
T Consensus       206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p---~~l~  281 (968)
T PLN00113        206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIP---PSIF  281 (968)
T ss_pred             hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCc---hhHh
Confidence            334444444444444444443333334444455555555554443332 344445555555555555543221   1445


Q ss_pred             hCcCcccccCCCCCH
Q psy4162         157 MIPQLVTLDSVFILP  171 (210)
Q Consensus       157 ~l~~L~~L~l~~~~~  171 (210)
                      .+++|+.|+++.|..
T Consensus       282 ~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        282 SLQKLISLDLSDNSL  296 (968)
T ss_pred             hccCcCEEECcCCee
Confidence            555555555555543

>KOG0617|consensus

Probab=99.27  E-value=2.9e-13  Score=97.81  Aligned_cols=142  Identities=20%  Similarity=0.201  Sum_probs=92.1

Q ss_pred             cceeCCCCCccccchhhhcccCC----cccccCCCCCC-C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP----NVHRLGESPPM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~----~~~~~~~~~~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ++|.+|+|.++-+++..- .+.+    +.....+..++ + ++++.|+.|++.-|++..+|       ..|+.++.|+.|
T Consensus        36 TrLtLSHNKl~~vppnia-~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp-------rgfgs~p~levl  107 (264)
T KOG0617|consen   36 TRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP-------RGFGSFPALEVL  107 (264)
T ss_pred             hhhhcccCceeecCCcHH-HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc-------cccCCCchhhhh
Confidence            458888888888777532 1222    00011122222 2 55555666666656555555       566666777777


Q ss_pred             ECcCCCCCc--CCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162          89 DLSFNNIKN--VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus        89 ~Ls~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                      |+++|++.+  ++.. |-.+..|+.|.++.|.+.-++  ...+.+++|+.|.+.+|.+-.+|.    .++.++.|+.|++
T Consensus       108 dltynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp--~dvg~lt~lqil~lrdndll~lpk----eig~lt~lrelhi  180 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEILP--PDVGKLTNLQILSLRDNDLLSLPK----EIGDLTRLRELHI  180 (264)
T ss_pred             hccccccccccCCcc-hhHHHHHHHHHhcCCCcccCC--hhhhhhcceeEEeeccCchhhCcH----HHHHHHHHHHHhc
Confidence            777766643  3333 445666777777777776666  346788889999999999888887    7888888999999


Q ss_pred             CCCCH
Q psy4162         167 VFILP  171 (210)
Q Consensus       167 ~~~~~  171 (210)
                      ++|..
T Consensus       181 qgnrl  185 (264)
T KOG0617|consen  181 QGNRL  185 (264)
T ss_pred             cccee
Confidence            88864

>KOG1259|consensus

Probab=99.22  E-value=1.9e-12  Score=101.15  Aligned_cols=135  Identities=30%  Similarity=0.286  Sum_probs=102.8

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCC--CC---C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESP--PM---L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~--~~---~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      +++|+|+|.|+.++...  .+-.++..+.+..  +.   + +.+++|+.||||+|.++.+.+       .-..+.+++.|
T Consensus       287 telDLS~N~I~~iDESv--KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-------wh~KLGNIKtL  357 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESV--KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-------WHLKLGNIKTL  357 (490)
T ss_pred             hhccccccchhhhhhhh--hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-------hHhhhcCEeee
Confidence            45999999999888764  2222222222222  11   2 667778888888888888774       33455778888


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQ  160 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  160 (210)
                      .|+.|.|..+..  +..+.+|..|++++|+|..+..+..++.+|.|+.+.+.+||+..+++||..+++.+..
T Consensus       358 ~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGE  427 (490)
T KOG1259|consen  358 KLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGE  427 (490)
T ss_pred             ehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhh
Confidence            888888877765  6678889999999999999988888999999999999999999999999888777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.22  E-value=3.2e-11  Score=110.98  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=85.2

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+.+|+.|++++|.+....+      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.
T Consensus       209 ~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~  281 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGEIP------YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIF  281 (968)
T ss_pred             cCcCCccEEECcCCccCCcCC------hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hhHh
Confidence            445555555555555554333      667888899999999998887666668888899999999998876554 6677


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      .+++|+.|++++|.+.+..+   ..+..+++|+.|++.+|....
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEIP---ELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             hccCcCEEECcCCeeccCCC---hhHcCCCCCcEEECCCCccCC
Confidence            88899999999998875543   367888899999998887654

>KOG1259|consensus

Probab=99.20  E-value=2.1e-12  Score=100.95  Aligned_cols=109  Identities=29%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .-.+.++.|++|+|.|..+..        +..+++|+.||||+|.++.+... ...+.+.+.|.|+.|.+.++..   ++
T Consensus       304 KL~Pkir~L~lS~N~i~~v~n--------La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~La~N~iE~LSG---L~  371 (490)
T KOG1259|consen  304 KLAPKLRRLILSQNRIRTVQN--------LAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKLAQNKIETLSG---LR  371 (490)
T ss_pred             hhccceeEEeccccceeeehh--------hhhcccceEeecccchhHhhhhh-HhhhcCEeeeehhhhhHhhhhh---hH
Confidence            445667777777777776642        45557777777777777776553 3446677777777777766653   56


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      .+-+|..||+++|.|..+...+  .++.+|.|+++.+.+|++.
T Consensus       372 KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  372 KLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCcc
Confidence            6778889999999988765432  4788888999999888864

>KOG0618|consensus

Probab=99.15  E-value=3.6e-12  Score=111.68  Aligned_cols=108  Identities=21%  Similarity=0.224  Sum_probs=93.7

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .++++|+.|+|++|+++.+|.      ..+..+..|++|+||+|+++.++.. ...+..|+.|...+|++..+|+   +.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~fPe---~~  449 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLSFPE---LA  449 (1081)
T ss_pred             ccccceeeeeecccccccCCH------HHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhcCCceeechh---hh
Confidence            556679999999999999998      8899999999999999999999965 7889999999999999999985   67


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      .++.|+.+|++.|.++...-   ....-.++|++||++||+
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l---~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTL---PEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCcceEEecccchhhhhhh---hhhCCCcccceeeccCCc
Confidence            89999999999999986533   122223799999999998

>KOG0472|consensus

Probab=99.12  E-value=3e-12  Score=103.30  Aligned_cols=111  Identities=20%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ++|.+|..|++..|+|..+|.        |.++..|.++.++.|+|..++....+.+.++..|+++.|++++.|  +.+.
T Consensus       203 g~l~~L~~LyL~~Nki~~lPe--------f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~c  272 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLPE--------FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEIC  272 (565)
T ss_pred             cchhhhHHHHhhhcccccCCC--------CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHH
Confidence            777778888888888888764        666688888888889988888887778899999999999999988  5567


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      -+.+|..||+++|.++.+|.    .++.+ +|+.|-+.||+...-.
T Consensus       273 lLrsL~rLDlSNN~is~Lp~----sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPY----SLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             HhhhhhhhcccCCccccCCc----ccccc-eeeehhhcCCchHHHH
Confidence            78889999999999999987    68888 8999999999876533

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=8.2e-11  Score=71.82  Aligned_cols=59  Identities=32%  Similarity=0.449  Sum_probs=37.3

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCcc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI  119 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i  119 (210)
                      |+.|++++|+++.++.      ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|++
T Consensus         3 L~~L~l~~n~l~~i~~------~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPP------DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECT------TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCH------HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            6666666666666665      5666666666666666666666665566666666666666653

...

>KOG0617|consensus

Probab=99.11  E-value=6.4e-12  Score=90.89  Aligned_cols=127  Identities=19%  Similarity=0.156  Sum_probs=95.5

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC-----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM-----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW   87 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~   87 (210)
                      ...|++++|+|..+|.... +++. .++.+++..+.     +++++.|+.||+.+|.+.+-.-     +..|..+..|+.
T Consensus        58 levln~~nnqie~lp~~is-sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l-----pgnff~m~tlra  131 (264)
T KOG0617|consen   58 LEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL-----PGNFFYMTTLRA  131 (264)
T ss_pred             hhhhhcccchhhhcChhhh-hchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC-----CcchhHHHHHHH
Confidence            3458888888888887642 2333 33344444333     4888889999999988876321     156666788888


Q ss_pred             EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      |+++.|.+..+++. .+.+.+|+.|.++.|.+-+++  ..++.+..|+.|++.+|.++-+|+
T Consensus       132 lyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lp--keig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  132 LYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             HHhcCCCcccCChh-hhhhcceeEEeeccCchhhCc--HHHHHHHHHHHHhcccceeeecCh
Confidence            89999988888887 788888999999999888887  668888889999999999888877

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=1.1e-10  Score=71.19  Aligned_cols=61  Identities=28%  Similarity=0.419  Sum_probs=55.3

Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCC
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI  144 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  144 (210)
                      ++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++ ..|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            468999999999999998889999999999999999999886 8899999999999999875

...

>KOG0444|consensus

Probab=99.08  E-value=6.8e-12  Score=106.50  Aligned_cols=90  Identities=21%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .+|.+|..+|+|.|.+..+|       ..+..+.+|+.|+||+|+|+.+... .+.+.+|+.|++++|+++.+|  ..+.
T Consensus       219 d~l~NL~dvDlS~N~Lp~vP-------ecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP--~avc  288 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLPIVP-------ECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLP--DAVC  288 (1255)
T ss_pred             hhhhhhhhccccccCCCcch-------HHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccch--HHHh
Confidence            66777888888888888877       6677778888899999988887664 555678888888888888887  5666


Q ss_pred             cCCCcCEEeeeCCCCC--Cccc
Q psy4162         130 RVNSLRTLSLYGNPIE--KIRE  149 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~--~~~~  149 (210)
                      .+++|+.|.+.+|++.  ++|.
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCcc
Confidence            6777777777776654  4444

>KOG0618|consensus

Probab=99.08  E-value=8.9e-12  Score=109.26  Aligned_cols=150  Identities=21%  Similarity=0.197  Sum_probs=122.9

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-----cccccCCCCCC-C--CCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-----NVHRLGESPPM-L--VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-----~~~~~~~~~~~-~--~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      ...+||+..|+|..+++..+.-+..     +.....+...+ +  ..++.|+.|++.+|++++---      ..+.++.+
T Consensus       311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~------p~l~~~~h  384 (1081)
T KOG0618|consen  311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF------PVLVNFKH  384 (1081)
T ss_pred             eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch------hhhccccc
Confidence            4567999999999999976542222     11111222222 2  667889999999999998543      56777899


Q ss_pred             CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      |+.|+|++|+++.++...+..+..|+.|+|++|.++.++  +.+..++.|++|...+|.+..+|.     ++.++.|+.+
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe-----~~~l~qL~~l  457 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQLLSFPE-----LAQLPQLKVL  457 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCceeechh-----hhhcCcceEE
Confidence            999999999999999988999999999999999999998  778899999999999999999996     8899999999


Q ss_pred             cCCCCCHHHHH
Q psy4162         165 DSVFILPSEKQ  175 (210)
Q Consensus       165 ~l~~~~~~~~~  175 (210)
                      |++.|...+-.
T Consensus       458 DlS~N~L~~~~  468 (1081)
T KOG0618|consen  458 DLSCNNLSEVT  468 (1081)
T ss_pred             ecccchhhhhh
Confidence            99999876654

>KOG4237|consensus

Probab=99.06  E-value=2.3e-11  Score=98.00  Aligned_cols=126  Identities=25%  Similarity=0.230  Sum_probs=109.6

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      ..++.+..+++.+|..    +|.                ....++|..|+|+.+|+      +.|+.+.+|+.|+|++|.
T Consensus        49 ~~VdCr~~GL~eVP~~----LP~----------------~tveirLdqN~I~~iP~------~aF~~l~~LRrLdLS~N~  102 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPAN----LPP----------------ETVEIRLDQNQISSIPP------GAFKTLHRLRRLDLSKNN  102 (498)
T ss_pred             ceEEccCCCcccCccc----CCC----------------cceEEEeccCCcccCCh------hhccchhhhceecccccc
Confidence            5588888888888874    333                38999999999999998      999999999999999999


Q ss_pred             CCcCCcccccCCCCccEEEccC-CccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162          95 IKNVDKNMFTNFPNLKILYLHK-NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus        95 i~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      |+.|.++.|+++.++..|-+-+ |+|+.++. +.|+++.+|+.|.+..|.+.+++.   ..+..++++..|.+-.|.
T Consensus       103 Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan~i~Cir~---~al~dL~~l~lLslyDn~  175 (498)
T KOG4237|consen  103 ISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNANHINCIRQ---DALRDLPSLSLLSLYDNK  175 (498)
T ss_pred             hhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChhhhcchhH---HHHHHhhhcchhcccchh
Confidence            9999999999999877765555 99999997 999999999999999999999877   689999998877775554

>KOG0472|consensus

Probab=99.01  E-value=6e-11  Score=95.93  Aligned_cols=148  Identities=20%  Similarity=0.151  Sum_probs=117.2

Q ss_pred             CCcceeCCCCCccccchhhhc--cc-CCcccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQ--KL-KPNVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~--~l-~~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      ....++++.|++..+|.....  .+ +..+...+.....   .+.++.|..|++++|.+.++|       ..++.+..|+
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-------~e~~~lv~Lq  461 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-------EEMGSLVRLQ  461 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc-------hhhhhhhhhh
Confidence            345699999999988874321  00 0111222333333   277888999999999999998       6677778899


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                      .++++.|++..+|.. ...+..++.+-.+.|++...++ ..+.++.+|..||+..|.+..+|+    .++.+++|++|++
T Consensus       462 ~LnlS~NrFr~lP~~-~y~lq~lEtllas~nqi~~vd~-~~l~nm~nL~tLDL~nNdlq~IPp----~LgnmtnL~hLeL  535 (565)
T KOG0472|consen  462 TLNLSFNRFRMLPEC-LYELQTLETLLASNNQIGSVDP-SGLKNMRNLTTLDLQNNDLQQIPP----ILGNMTNLRHLEL  535 (565)
T ss_pred             eecccccccccchHH-HhhHHHHHHHHhccccccccCh-HHhhhhhhcceeccCCCchhhCCh----hhccccceeEEEe
Confidence            999999999888764 5566778888888899999986 778899999999999999999998    8999999999999


Q ss_pred             CCCCHHH
Q psy4162         167 VFILPSE  173 (210)
Q Consensus       167 ~~~~~~~  173 (210)
                      .+|++..
T Consensus       536 ~gNpfr~  542 (565)
T KOG0472|consen  536 DGNPFRQ  542 (565)
T ss_pred             cCCccCC
Confidence            9999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.96  E-value=1.1e-09  Score=97.25  Aligned_cols=149  Identities=19%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             CCCCcceeCCCCCccccchhhh--cccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhh------hhc---c
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAV--QKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLV------HRT---I   79 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~--~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~------~~~---~   79 (210)
                      |.....|++++|+|+.++....  ..+.-  -...+..++ ....+|+.|++++|+|+.+|.+..-.      ...   +
T Consensus       301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~L--s~N~L~~LP-~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~L  377 (788)
T PRK15387        301 PPGLQELSVSDNQLASLPALPSELCKLWA--YNNQLTSLP-TLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL  377 (788)
T ss_pred             ccccceeECCCCccccCCCCccccccccc--ccCcccccc-ccccccceEecCCCccCCCCCCCcccceehhhccccccC
Confidence            4456778888888888765322  11100  000111111 11135777777777777765421100      000   0


Q ss_pred             C-CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162          80 L-DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI  158 (210)
Q Consensus        80 ~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l  158 (210)
                      . .+..|+.|++++|+++.++..    ..+|+.|++++|+++.++.  .   ..+|..|++++|.++.+|.    .+..+
T Consensus       378 P~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~--l---~~~L~~L~Ls~NqLt~LP~----sl~~L  444 (788)
T PRK15387        378 PALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM--L---PSGLLSLSVYRNQLTRLPE----SLIHL  444 (788)
T ss_pred             cccccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc--c---hhhhhhhhhccCcccccCh----HHhhc
Confidence            0 113577777777777766542    3567778888888877663  1   2457788888888888886    68889


Q ss_pred             cCcccccCCCCCHHHHH
Q psy4162         159 PQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       159 ~~L~~L~l~~~~~~~~~  175 (210)
                      ++|+.|++++|+..+..
T Consensus       445 ~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        445 SSETTVNLEGNPLSERT  461 (788)
T ss_pred             cCCCeEECCCCCCCchH
Confidence            99999999999887654

>KOG0532|consensus

Probab=98.86  E-value=2.8e-10  Score=95.53  Aligned_cols=124  Identities=22%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             eeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCC
Q psy4162          17 LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIK   96 (210)
Q Consensus        17 L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~   96 (210)
                      +|++.|+++.++.-.+.  -.                 |+.|-+++|+++.+|       ..++.+++|..|+.+.|.+.
T Consensus       126 l~ls~NqlS~lp~~lC~--lp-----------------Lkvli~sNNkl~~lp-------~~ig~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  126 LDLSSNQLSHLPDGLCD--LP-----------------LKVLIVSNNKLTSLP-------EEIGLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             hhhccchhhcCChhhhc--Cc-----------------ceeEEEecCccccCC-------cccccchhHHHhhhhhhhhh
Confidence            66777777777665543  44                 889999999999988       56667788899999999999


Q ss_pred             cCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162          97 NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus        97 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      ++++. ...+.+|+.|.++.|.+..++  ..+..|+ |..||++.|++..+|.    .+.+|++|++|-+.+|+...-
T Consensus       180 slpsq-l~~l~slr~l~vrRn~l~~lp--~El~~Lp-Li~lDfScNkis~iPv----~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  180 SLPSQ-LGYLTSLRDLNVRRNHLEDLP--EELCSLP-LIRLDFSCNKISYLPV----DFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hchHH-hhhHHHHHHHHHhhhhhhhCC--HHHhCCc-eeeeecccCceeecch----hhhhhhhheeeeeccCCCCCC
Confidence            98887 778889999999999999988  4455655 8889999999999997    799999999999999987543

>PLN03150 hypothetical protein; Provisional

Probab=98.80  E-value=1.7e-08  Score=88.70  Aligned_cols=106  Identities=19%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      .++.|+|++|.+.+..+      ..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+..+ ..++.+++
T Consensus       419 ~v~~L~L~~n~L~g~ip------~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~  491 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIP------NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTS  491 (623)
T ss_pred             EEEEEECCCCCccccCC------HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCC
Confidence            37889999999987665      778889999999999999987666558889999999999999987665 77889999


Q ss_pred             cCEEeeeCCCCCC-ccchHHHHHHh-CcCcccccCCCCC
Q psy4162         134 LRTLSLYGNPIEK-IREYRAVVSTM-IPQLVTLDSVFIL  170 (210)
Q Consensus       134 L~~L~l~~n~l~~-~~~~~~~~l~~-l~~L~~L~l~~~~  170 (210)
                      |+.|++++|.+++ +|.    .+.. ..++..+++.+|+
T Consensus       492 L~~L~Ls~N~l~g~iP~----~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        492 LRILNLNGNSLSGRVPA----ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCEEECcCCcccccCCh----HHhhccccCceEEecCCc
Confidence            9999999999985 454    3443 2345556665553

>KOG1859|consensus

Probab=98.79  E-value=3.6e-10  Score=97.38  Aligned_cols=124  Identities=22%  Similarity=0.225  Sum_probs=98.1

Q ss_pred             eeCCCCCccccchhh-hcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162          17 LDLSFQQIQSLDKVA-VQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI   95 (210)
Q Consensus        17 L~ls~n~l~~l~~~~-~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i   95 (210)
                      .++++|.+..++... +.  +.                 ++.|+|++|+++.+.        .+..+++|+.|||++|.+
T Consensus       169 a~fsyN~L~~mD~SLqll--~a-----------------le~LnLshNk~~~v~--------~Lr~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLL--PA-----------------LESLNLSHNKFTKVD--------NLRRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             hhcchhhHHhHHHHHHHH--HH-----------------hhhhccchhhhhhhH--------HHHhcccccccccccchh
Confidence            667777777776643 22  55                 999999999999984        567789999999999999


Q ss_pred             CcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      ..++.-....+ .|..|.+++|.++++..   +.++.+|..||++.|-+.+....  ..++.+..|..|.+.||++..
T Consensus       222 ~~vp~l~~~gc-~L~~L~lrnN~l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  222 RHVPQLSMVGC-KLQLLNLRNNALTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ccccccchhhh-hheeeeecccHHHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence            99876322233 49999999999999875   56788999999999999876542  357888889999999999754

>KOG2123|consensus

Probab=98.77  E-value=6e-10  Score=86.34  Aligned_cols=116  Identities=29%  Similarity=0.315  Sum_probs=100.1

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV  131 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l  131 (210)
                      +.+.+.|+.-++.++++.        ....|+.|+.|.||-|+|+++.+  +..|..|+.|+|+.|.|.++.++.-+.++
T Consensus        18 l~~vkKLNcwg~~L~DIs--------ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--------ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHHhhhhcccCCCccHHH--------HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            444788888888888874        45677899999999999999988  89999999999999999999887778899


Q ss_pred             CCcCEEeeeCCCCCCc--cchHHHHHHhCcCcccccCCCCCHHHHHHH
Q psy4162         132 NSLRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVFILPSEKQET  177 (210)
Q Consensus       132 ~~L~~L~l~~n~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  177 (210)
                      |+|+.|+|..||..+.  +.||..++..+|+|+.||-......|...+
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A  135 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA  135 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence            9999999999998764  668999999999999999888776665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.75  E-value=2.5e-08  Score=88.80  Aligned_cols=114  Identities=16%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCC-C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ..|+++.++|+.+|......+..  +.+....+. . ..+++|+.|++++|+|+.+|.+          +++|+.|++++
T Consensus       204 ~~LdLs~~~LtsLP~~l~~~L~~--L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l----------p~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLPAHITT--LVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL----------PPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCCcCCcchhcCCCE--EEccCCcCCCCCCCCCCCcEEEecCCccCcccCc----------ccccceeeccC
Confidence            45889999998888743221111  111111222 1 3456788888888888877641          25777888888


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      |.++.++..    ...|+.|++++|+++.++.     .+++|+.|++++|.+..++.
T Consensus       272 N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~  319 (788)
T PRK15387        272 NPLTHLPAL----PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA  319 (788)
T ss_pred             Cchhhhhhc----hhhcCEEECcCCccccccc-----cccccceeECCCCccccCCC
Confidence            887776542    3467778888888887763     24678888888888887654

>PLN03150 hypothetical protein; Provisional

Probab=98.75  E-value=3.8e-08  Score=86.63  Aligned_cols=107  Identities=20%  Similarity=0.187  Sum_probs=82.7

Q ss_pred             ceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162          16 PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI   95 (210)
Q Consensus        16 ~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i   95 (210)
                      .|++++|.++...+..+..+++                 |+.|+|++|.+.+..+      ..+..+++|+.|+|++|++
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~-----------------L~~L~Ls~N~l~g~iP------~~~~~l~~L~~LdLs~N~l  478 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRH-----------------LQSINLSGNSIRGNIP------PSLGSITSLEVLDLSYNSF  478 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCC-----------------CCEEECCCCcccCcCC------hHHhCCCCCCEEECCCCCC
Confidence            3666666665544444444444                 9999999999986554      7789999999999999999


Q ss_pred             CcCCcccccCCCCccEEEccCCccCcccccccccc-CCCcCEEeeeCCCCCC
Q psy4162          96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR-VNSLRTLSLYGNPIEK  146 (210)
Q Consensus        96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~l~~n~l~~  146 (210)
                      ++..+..++.+++|+.|++++|.++...+ ..+.. ...+..+++.+|+..+
T Consensus       479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        479 NGSIPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCCCchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCceEEecCCcccc
Confidence            98777778999999999999999986654 44544 3467788999987543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.74  E-value=2.6e-08  Score=88.79  Aligned_cols=76  Identities=22%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      .|+.|++++|+++.++.. +  ..+|+.|++++|.++.++.  .+  .++|+.|++++|.+..+|.    .+  .++|+.
T Consensus       263 ~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~--~l--p~sL~~L~Ls~N~Lt~LP~----~l--~~sL~~  329 (754)
T PRK15370        263 ALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPA--HL--PSGITHLNVQSNSLTALPE----TL--PPGLKT  329 (754)
T ss_pred             CCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCcc--cc--hhhHHHHHhcCCccccCCc----cc--ccccee
Confidence            344455555544444332 1  1244555555555444432  11  1234445555555554443    11  245666


Q ss_pred             ccCCCCCHH
Q psy4162         164 LDSVFILPS  172 (210)
Q Consensus       164 L~l~~~~~~  172 (210)
                      |+++.|...
T Consensus       330 L~Ls~N~Lt  338 (754)
T PRK15370        330 LEAGENALT  338 (754)
T ss_pred             ccccCCccc
Confidence            666666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.74  E-value=1.9e-08  Score=89.56  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162          53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN  132 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~  132 (210)
                      ++|+.|++++|.++.++.       .+  .++|+.|++++|+++.++.. +  .++|+.|++++|.++.+++ . +.  .
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~-~-l~--~  388 (754)
T PRK15370        325 PGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPE-N-LP--A  388 (754)
T ss_pred             ccceeccccCCccccCCh-------hh--cCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCH-h-HH--H
Confidence            456666666666666552       22  25788888888887776653 2  3578888888888877763 2 22  3


Q ss_pred             CcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         133 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       133 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      .|+.|++++|.+..+|..-......++.+..|++.+|++.+..
T Consensus       389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~t  431 (754)
T PRK15370        389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERT  431 (754)
T ss_pred             HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence            5778888888888776522223444577888999999876543

>KOG1859|consensus

Probab=98.60  E-value=1.9e-09  Score=93.04  Aligned_cols=112  Identities=26%  Similarity=0.266  Sum_probs=95.3

Q ss_pred             ceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162          16 PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI   95 (210)
Q Consensus        16 ~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i   95 (210)
                      .|++++|++++++-+  ..++.                 |+.|||++|.+..++.++      ..++ .|+.|++++|.+
T Consensus       191 ~LnLshNk~~~v~~L--r~l~~-----------------LkhLDlsyN~L~~vp~l~------~~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  191 SLNLSHNKFTKVDNL--RRLPK-----------------LKHLDLSYNCLRHVPQLS------MVGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             hhccchhhhhhhHHH--Hhccc-----------------ccccccccchhccccccc------hhhh-hheeeeecccHH
Confidence            499999999999844  34577                 999999999999998743      2233 499999999999


Q ss_pred             CcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHH
Q psy4162          96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS  155 (210)
Q Consensus        96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  155 (210)
                      +++..  +..+.+|..|+++.|-+.+..++..+..+..|+.|+|.|||+.+-|.+|....
T Consensus       245 ~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaata  302 (1096)
T KOG1859|consen  245 TTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATA  302 (1096)
T ss_pred             Hhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHH
Confidence            99887  78899999999999999888776677888899999999999999999886544

>KOG0532|consensus

Probab=98.60  E-value=1.9e-09  Score=90.69  Aligned_cols=144  Identities=23%  Similarity=0.177  Sum_probs=113.3

Q ss_pred             CCcceeCCCCCccccchhh--hcccCC-cccccCCCCCC-C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162          13 FKIPLDLSFQQIQSLDKVA--VQKLKP-NVHRLGESPPM-L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW   87 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~--~~~l~~-~~~~~~~~~~~-~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~   87 (210)
                      .++.+|++.|++..++...  |..+.. ......+...+ . +.+..|+.+||+.|+++.+|       ..+..++ |+.
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp-------~~lC~lp-Lkv  147 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLP-------DGLCDLP-LKV  147 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCC-------hhhhcCc-cee
Confidence            3566999999999988753  222222 11122444444 3 78888999999999999988       4444553 889


Q ss_pred             EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162          88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      |.+++|+++.++.. .+....|..|+.+.|.+..++  ..++++.+|+.|.+..|.+..+|.    .+..++ |..||++
T Consensus       148 li~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slp--sql~~l~slr~l~vrRn~l~~lp~----El~~Lp-Li~lDfS  219 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLP--SQLGYLTSLRDLNVRRNHLEDLPE----ELCSLP-LIRLDFS  219 (722)
T ss_pred             EEEecCccccCCcc-cccchhHHHhhhhhhhhhhch--HHhhhHHHHHHHHHhhhhhhhCCH----HHhCCc-eeeeecc
Confidence            99999999999987 667889999999999999998  678999999999999999999987    566666 8899999


Q ss_pred             CCCHH
Q psy4162         168 FILPS  172 (210)
Q Consensus       168 ~~~~~  172 (210)
                      .|++.
T Consensus       220 cNkis  224 (722)
T KOG0532|consen  220 CNKIS  224 (722)
T ss_pred             cCcee
Confidence            99864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.59  E-value=9.2e-08  Score=77.12  Aligned_cols=38  Identities=21%  Similarity=0.206  Sum_probs=16.3

Q ss_pred             CCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccC
Q psy4162          83 DLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIE  120 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~  120 (210)
                      ++|+.|++++|.++...    ...+..+.+|+.|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            44555555555544211    111233344555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2739|consensus

Probab=98.57  E-value=5.1e-08  Score=74.87  Aligned_cols=112  Identities=21%  Similarity=0.296  Sum_probs=89.1

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC--CCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN--NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL  128 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  128 (210)
                      .+..|+.+.+.+..++.+..        |..+++|++|.++.|  ++..-..-....+++|+++++++|+++.+..+..+
T Consensus        41 ~~~~le~ls~~n~gltt~~~--------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTN--------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccchhhhhhhccceeeccc--------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            34447888888888887754        566789999999999  55443222234569999999999999976555567


Q ss_pred             ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162         129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      ..+.+|..|++..|......+||..++..+++|++||...+.
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            788899999999999999999999999999999999886554

>KOG2982|consensus

Probab=98.57  E-value=2e-08  Score=78.74  Aligned_cols=80  Identities=24%  Similarity=0.314  Sum_probs=66.5

Q ss_pred             ccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc---cchHHHHHHhCcCcccccCCCCCHHHHHHHHH
Q psy4162         103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI---REYRAVVSTMIPQLVTLDSVFILPSEKQETNA  179 (210)
Q Consensus       103 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  179 (210)
                      +..++.+..|+|+.|+|.+|..++.+.+++.|..|.+++||+.+-   ...|.-.++++++++.|+.+.+...++++.+.
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr  299 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSER  299 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHH
Confidence            344677778999999999998889999999999999999998742   11233458999999999999999999998887


Q ss_pred             HHH
Q psy4162         180 LNA  182 (210)
Q Consensus       180 ~~~  182 (210)
                      ++.
T Consensus       300 ~fV  302 (418)
T KOG2982|consen  300 RFV  302 (418)
T ss_pred             HHH
Confidence            776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.49  E-value=3.5e-07  Score=73.72  Aligned_cols=120  Identities=24%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCccccccc
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSVFV  127 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~  127 (210)
                      +..|+.|++++|.++.. .+..+. ..+..++.|+.|++++|.++....    ..+..+++|+.|++++|.++.... ..
T Consensus       164 ~~~L~~L~l~~n~l~~~-~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~-~~  240 (319)
T cd00116         164 NRDLKELNLANNGIGDA-GIRALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA-AA  240 (319)
T ss_pred             CCCcCEEECcCCCCchH-HHHHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH-HH
Confidence            33466666666665531 111110 223334566666666666543321    123345566666666666654221 11


Q ss_pred             c-c----cCCCcCEEeeeCCCCCCccchH-HHHHHhCcCcccccCCCCCHHHH
Q psy4162         128 L-R----RVNSLRTLSLYGNPIEKIREYR-AVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       128 ~-~----~l~~L~~L~l~~n~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      + .    ..+.|+.|++++|.++...... ...+..+++|+.+++++|.+.+.
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            1 1    1356666666666665321100 01344455666666666666544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207|consensus

Probab=98.46  E-value=4.5e-08  Score=80.11  Aligned_cols=168  Identities=21%  Similarity=0.173  Sum_probs=118.9

Q ss_pred             CcceeCCCCCccccchhh-hcccCC-cccccCCC-CCC----C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVA-VQKLKP-NVHRLGES-PPM----L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~-~~~l~~-~~~~~~~~-~~~----~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      .++|.++.++++.-+... ...+|+ .++.+... ...    + .-+..|+.|||++|++-.++.+     ...+.++.|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L  273 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGL  273 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccch
Confidence            356888888887322221 122344 11222222 111    1 5677799999999998887742     345667888


Q ss_pred             CEEECcCCCCCcCCcccc------cCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch-HHHHHHhC
Q psy4162          86 GWIDLSFNNIKNVDKNMF------TNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY-RAVVSTMI  158 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~------~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l  158 (210)
                      ..|+++.+.+.++.....      ...++|+.|++..|+|..+..+..+..+++|..|.+..|.+....+. +..+++++
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~  353 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARI  353 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeeh
Confidence            889999998887643212      34678999999999999888777888888999999999998754332 22468899


Q ss_pred             cCcccccCCCCCHHHHHHHHHHHHhhhh
Q psy4162         159 PQLVTLDSVFILPSEKQETNALNAEIRS  186 (210)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~  186 (210)
                      ++|..|+-..+...+|..++..+..|.+
T Consensus       354 ~~l~~LN~~di~p~eRR~AEl~~~~~~~  381 (505)
T KOG3207|consen  354 SQLVKLNDVDISPNERRDAELYYLSKIF  381 (505)
T ss_pred             hhhhhhcccccChHHhhhhhhhHHhhhh
Confidence            9999999999999999999888776643

>KOG0531|consensus

Probab=98.45  E-value=1.1e-07  Score=80.00  Aligned_cols=118  Identities=25%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+.++..|++.+|.|..+..       .+..+++|+.|++++|+|+.+.+  +..+..|+.|++.+|.|+.+..   +.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~-------~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~---~~  159 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIEN-------LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG---LE  159 (414)
T ss_pred             ccccceeeeeccccchhhccc-------chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC---Cc
Confidence            566779999999999998874       25566889999999999998887  6778889999999999988864   55


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNA  182 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  182 (210)
                      .++.|+.+++++|.+..+...  . ...+.+++.+++.+|.+.+.........
T Consensus       160 ~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~  209 (414)
T KOG0531|consen  160 SLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIEGLDLLKK  209 (414)
T ss_pred             cchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcccchHHHHH
Confidence            688899999999999888651  1 4777888888888888776665544443

>KOG1644|consensus

Probab=98.44  E-value=2.4e-07  Score=68.82  Aligned_cols=109  Identities=26%  Similarity=0.295  Sum_probs=88.8

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL  134 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L  134 (210)
                      -+.+++.+.++..+..++..       +.+...+|+++|.+..++.  |+.++.|.+|.++.|+|+.+.+ .--.-++.|
T Consensus        21 e~e~~LR~lkip~ienlg~~-------~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l   90 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGAT-------LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDP-DLDTFLPNL   90 (233)
T ss_pred             ccccccccccccchhhcccc-------ccccceecccccchhhccc--CCCccccceEEecCCcceeecc-chhhhcccc
Confidence            56677888787776653321       2578899999999988877  8999999999999999999975 434457889


Q ss_pred             CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      ..|.+.+|.+..+.+.  .-++.+|+|+.|.+-+|++.++.
T Consensus        91 ~~L~LtnNsi~~l~dl--~pLa~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen   91 KTLILTNNSIQELGDL--DPLASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             ceEEecCcchhhhhhc--chhccCCccceeeecCCchhccc
Confidence            9999999999977553  34899999999999999998776

>KOG4579|consensus

Probab=98.43  E-value=1.4e-08  Score=70.96  Aligned_cols=109  Identities=26%  Similarity=0.212  Sum_probs=78.4

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL  134 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L  134 (210)
                      +..++|+.+++-.++..    ...+....+|+.++|++|.+..+++..-...+.++.+++.+|.+..+|. + +..++.|
T Consensus        29 ~h~ldLssc~lm~i~da----vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E-~Aam~aL  102 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADA----VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-E-LAAMPAL  102 (177)
T ss_pred             hhhcccccchhhHHHHH----HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-H-HhhhHHh
Confidence            56677777776655421    1444555677788888888888887755556678888888888888873 3 7888888


Q ss_pred             CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +.++++.|++...+.    ++..+.++..||..++...+
T Consensus       103 r~lNl~~N~l~~~p~----vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  103 RSLNLRFNPLNAEPR----VIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             hhcccccCccccchH----HHHHHHhHHHhcCCCCcccc
Confidence            888888888888776    56667777777777776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.42  E-value=9e-08  Score=79.78  Aligned_cols=107  Identities=23%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC------------
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN------------  117 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n------------  117 (210)
                      ..+++|+.|++++|++..++.       ....++.|..|++++|++..++.. ......|..+.+++|            
T Consensus       160 ~~l~~L~~L~l~~N~l~~l~~-------~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~  231 (394)
T COG4886         160 RNLPNLKNLDLSFNDLSDLPK-------LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNL  231 (394)
T ss_pred             hccccccccccCCchhhhhhh-------hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhc
Confidence            344456666666666666553       111335555555666655555542 122333444444444            


Q ss_pred             -----------ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162         118 -----------QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus       118 -----------~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~  171 (210)
                                 ++...+  ..++.++.++.|++++|.++.++.     ++.+.+++.|+++++..
T Consensus       232 ~~l~~l~l~~n~~~~~~--~~~~~l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         232 KNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccccccccCCceeeecc--chhccccccceecccccccccccc-----ccccCccCEEeccCccc
Confidence                       333322  223445556666666666665543     55555666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.35  E-value=1.7e-07  Score=78.14  Aligned_cols=80  Identities=29%  Similarity=0.389  Sum_probs=52.2

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      +|+.|++++|.+..++       ..+..++.|+.|++++|++..++.. ......|..|++++|++..++.  ..+....
T Consensus       141 nL~~L~l~~N~i~~l~-------~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~--~~~~~~~  210 (394)
T COG4886         141 NLKELDLSDNKIESLP-------SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPP--EIELLSA  210 (394)
T ss_pred             hcccccccccchhhhh-------hhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCch--hhhhhhh
Confidence            4777777777777775       3455667777777777777777763 2256777777777777777763  2223333


Q ss_pred             cCEEeeeCCC
Q psy4162         134 LRTLSLYGNP  143 (210)
Q Consensus       134 L~~L~l~~n~  143 (210)
                      |..+.+++|+
T Consensus       211 L~~l~~~~N~  220 (394)
T COG4886         211 LEELDLSNNS  220 (394)
T ss_pred             hhhhhhcCCc
Confidence            5555555553

>KOG4579|consensus

Probab=98.33  E-value=4.6e-08  Score=68.43  Aligned_cols=108  Identities=21%  Similarity=0.166  Sum_probs=88.3

Q ss_pred             ceeCCCCCccccchhhh--cccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          16 PLDLSFQQIQSLDKVAV--QKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        16 ~L~ls~n~l~~l~~~~~--~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      .+|++.+.|-.++....  .....                 |..+++++|.+..+|.      ..-...+.++.+++++|
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~e-----------------l~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~n   87 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYE-----------------LTKISLSDNGFKKFPK------KFTIKFPTATTLNLANN   87 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCce-----------------EEEEecccchhhhCCH------HHhhccchhhhhhcchh
Confidence            37788888877776542  22233                 8889999999999985      44444468999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      +|+.++.. +..++.|+.++++.|.+...+  ..+..+.++-.|+..+|.+..++.
T Consensus        88 eisdvPeE-~Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen   88 EISDVPEE-LAAMPALRSLNLRFNPLNAEP--RVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             hhhhchHH-HhhhHHhhhcccccCccccch--HHHHHHHhHHHhcCCCCccccCcH
Confidence            99999988 999999999999999999987  456668999999999999988875

>PLN03210 Resistant to P

Probab=98.33  E-value=3e-06  Score=79.74  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             CCCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCcccccCCCCccEEEccCCccCccccccc
Q psy4162          50 VGRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV  127 (210)
Q Consensus        50 ~~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  127 (210)
                      +.+++|+.|++++| .+..+|.       .. .+++|+.|++++|. +..++.    ...+|+.|++++|.++.+|  ..
T Consensus       799 ~~L~~L~~L~Ls~C~~L~~LP~-------~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP--~s  864 (1153)
T PLN03210        799 QNLHKLEHLEIENCINLETLPT-------GI-NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVP--WW  864 (1153)
T ss_pred             hCCCCCCEEECCCCCCcCeeCC-------CC-CccccCEEECCCCCccccccc----cccccCEeECCCCCCccCh--HH
Confidence            56677899998875 4666653       22 56788889988874 444433    1357888999999998887  55


Q ss_pred             cccCCCcCEEeeeC-CCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162         128 LRRVNSLRTLSLYG-NPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       128 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      +..+++|+.|++++ +.+..++.    .+..+++|+.+++.+|.
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~----~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSL----NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCc----ccccccCCCeeecCCCc
Confidence            78889999999988 45667665    46677777777777775

syringae 6; Provisional

>KOG3207|consensus

Probab=98.33  E-value=7.7e-08  Score=78.80  Aligned_cols=160  Identities=18%  Similarity=0.123  Sum_probs=87.7

Q ss_pred             CcceeCCCCCccccchhh--hcccCCcccccCCCCC----C--C---CCCCCccEEEccCCccccccCCchhhhhccCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVA--VQKLKPNVHRLGESPP----M--L---VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP   82 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~--~~~l~~~~~~~~~~~~----~--~---~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l   82 (210)
                      ...||+|.|-+....+..  ...|++ ...+++...    .  +   ..+.+|+.|.++.+.++.-. .    ......+
T Consensus       148 v~~LdLS~NL~~nw~~v~~i~eqLp~-Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~-V----~~~~~~f  221 (505)
T KOG3207|consen  148 VRDLDLSRNLFHNWFPVLKIAEQLPS-LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD-V----QWILLTF  221 (505)
T ss_pred             ceeecchhhhHHhHHHHHHHHHhccc-chhcccccccccCCccccchhhhhhhheEEeccCCCCHHH-H----HHHHHhC
Confidence            345999999888876653  122333 111111111    1  1   44566777777777766311 1    1233344


Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch---HHHHHHhCc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY---RAVVSTMIP  159 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~l~  159 (210)
                      |+|..|+|..|....+......-++.|+.|+|++|.+..++.....+.++.|..|+++.+.+..+..+   -.......+
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            66666666666432222222344566777777777777766555566777777777777776654211   001134566


Q ss_pred             CcccccCCCCCHHHHHHHHH
Q psy4162         160 QLVTLDSVFILPSEKQETNA  179 (210)
Q Consensus       160 ~L~~L~l~~~~~~~~~~~~~  179 (210)
                      +|+.|++..|++.++...+.
T Consensus       302 kL~~L~i~~N~I~~w~sl~~  321 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWRSLNH  321 (505)
T ss_pred             cceeeecccCccccccccch
Confidence            77777777777755554433

>PLN03210 Resistant to P

Probab=98.32  E-value=2.6e-06  Score=80.15  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=41.9

Q ss_pred             CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCcccccCCCCccEEEccCCc-cCcccccccccc
Q psy4162          53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRR  130 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~  130 (210)
                      .+|+.|++++|.+..++       ..+..+++|+.++++++. +..++.  +..+++|+.|++++|. +..++  ..++.
T Consensus       611 ~~L~~L~L~~s~l~~L~-------~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp--~si~~  679 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLW-------DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP--SSIQY  679 (1153)
T ss_pred             cCCcEEECcCccccccc-------cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc--hhhhc
Confidence            34666666666666554       334455566666665542 444432  4455566666665543 33333  34555


Q ss_pred             CCCcCEEeeeCC
Q psy4162         131 VNSLRTLSLYGN  142 (210)
Q Consensus       131 l~~L~~L~l~~n  142 (210)
                      +++|+.|++++|
T Consensus       680 L~~L~~L~L~~c  691 (1153)
T PLN03210        680 LNKLEDLDMSRC  691 (1153)
T ss_pred             cCCCCEEeCCCC
Confidence            555666665554

syringae 6; Provisional

>KOG0531|consensus

Probab=98.27  E-value=3.7e-07  Score=76.70  Aligned_cols=109  Identities=23%  Similarity=0.280  Sum_probs=92.1

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV  131 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l  131 (210)
                      +..++.+.+..|.+....       ..+..+.+|..+++.+|+|..+... +..+++|+.|++++|.|+.+..   +..+
T Consensus        71 l~~l~~l~l~~n~i~~~~-------~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~---l~~l  139 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKIL-------NHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG---LSTL  139 (414)
T ss_pred             hHhHHhhccchhhhhhhh-------cccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc---hhhc
Confidence            344778888889988843       4466778999999999999998774 6779999999999999999875   5667


Q ss_pred             CCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHH
Q psy4162         132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQE  176 (210)
Q Consensus       132 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  176 (210)
                      +.|..|++++|++..+..     +..++.|+.+++++|.+.+...
T Consensus       140 ~~L~~L~l~~N~i~~~~~-----~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDISG-----LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             cchhhheeccCcchhccC-----CccchhhhcccCCcchhhhhhh
Confidence            779999999999999987     5558899999999999887776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=1.1e-06  Score=49.57  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=23.4

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD   99 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~   99 (210)
                      +|+.|++++|+|+.++       ..+..+++|+.|++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~~l~-------~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP-------PELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHG-------GHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccC-------chHhCCCCCCEEEecCCCCCCCc
Confidence            3666777777777665       33566666666666666666543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=3.6e-06  Score=47.51  Aligned_cols=39  Identities=41%  Similarity=0.491  Sum_probs=18.0

Q ss_pred             CccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162         108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus       108 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                      +|+.|++++|+|+.++  ..+..+++|+.|++++|++++++
T Consensus         2 ~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCCCc
Confidence            3445555555555444  22445555555555555555443

...

>KOG2982|consensus

Probab=98.11  E-value=8.2e-07  Score=69.85  Aligned_cols=126  Identities=18%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .....++.+||.+|.|+.+..++    ..+.++|.|+.|+++.|++.......-....+|+.+-|.++.+.+...-..+.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~----~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIG----AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHH----HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence            44567999999999999987654    45678899999999999998866542235679999999999887765324567


Q ss_pred             cCCCcCEEeeeCCCCCCc---cchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKI---REYRAVVSTMIPQLVTLDSVFILPSEKQETNALNA  182 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  182 (210)
                      .+|.++.|+++.|.+..+   ..   ..-..-+.+.+|+..+|...-|..+..+..
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r  196 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDN---CIEDWSTEVLTLHQLPCLEQLWLNKNKLSR  196 (418)
T ss_pred             cchhhhhhhhccchhhhhccccc---cccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence            899999999999965532   22   112234478889999998877776665554

>KOG4658|consensus

Probab=97.72  E-value=3.7e-05  Score=70.09  Aligned_cols=107  Identities=22%  Similarity=0.152  Sum_probs=73.9

Q ss_pred             CCCCCccEEEccCCc-cccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162          50 VGRYDTRSLWLSHNK-ISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL  128 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~-l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  128 (210)
                      ..|+.|+.||+++|. +..+|       ..++.+-+|++|++++..+..+|.. ++.+..|.+|++..+......+ ...
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP-------~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~-~i~  638 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLP-------SSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIP-GIL  638 (889)
T ss_pred             hhCcceEEEECCCCCccCcCC-------hHHhhhhhhhcccccCCCccccchH-HHHHHhhheecccccccccccc-chh
Confidence            456669999998755 55555       7778888899999999888888877 7888888888888876544443 556


Q ss_pred             ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162         129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                      ..+.+|++|.+.......... -...+..+.+|+.+..
T Consensus       639 ~~L~~Lr~L~l~~s~~~~~~~-~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSALSNDKL-LLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccEEEeeccccccchh-hHHhhhcccchhhhee
Confidence            668888888887665332211 1123455555555555

>KOG4658|consensus

Probab=97.63  E-value=3.1e-05  Score=70.60  Aligned_cols=108  Identities=19%  Similarity=0.118  Sum_probs=85.4

Q ss_pred             CCCCCccEEEccCCc--cccccCCchhhhhccCCCCCCCEEECcCC-CCCcCCcccccCCCCccEEEccCCccCcccccc
Q psy4162          50 VGRYDTRSLWLSHNK--ISLVYGLDSLVHRTILDPDLIGWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF  126 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~--l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  126 (210)
                      ...+.|+.|-+..|.  +..++.      ..|..++.|+.||+++| .+..+|.. .+.+-+|+.|+++++.+..+|  .
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~------~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP--~  612 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISG------EFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLP--S  612 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCH------HHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccc--h
Confidence            334458888888886  666665      77899999999999988 56666665 788999999999999999998  6


Q ss_pred             ccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162         127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       127 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      .++.+..|.+|++..+.-.....   .....+++|++|.+..-
T Consensus       613 ~l~~Lk~L~~Lnl~~~~~l~~~~---~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEVTGRLESIP---GILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHHHHHhhheecccccccccccc---chhhhcccccEEEeecc
Confidence            68899999999999877543333   26777889988877444

>KOG3665|consensus

Probab=97.60  E-value=9.7e-05  Score=65.77  Aligned_cols=120  Identities=19%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .-+|+|+.|.+++-.+..-. +.    .....+++|..||+|+..++.+..  .+.+.+|+.|.+++=.+.....+..+-
T Consensus       145 ~~LPsL~sL~i~~~~~~~~d-F~----~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDD-FS----QLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             hhCcccceEEecCceecchh-HH----HHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCCCCCchhhHHHHh
Confidence            34677999988887765532 11    445667899999999999998844  788999999999887887766556677


Q ss_pred             cCCCcCEEeeeCCCCCCccchH---HHHHHhCcCcccccCCCCCHHHHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYR---AVVSTMIPQLVTLDSVFILPSEKQE  176 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~  176 (210)
                      +|++|+.||+|.......+..-   .+....+|.|+.||.+++.+.+..-
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            8999999999988876554211   1123459999999999888765543

>KOG1909|consensus

Probab=97.51  E-value=0.00014  Score=58.49  Aligned_cols=117  Identities=21%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccccccc-
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSVFVL-  128 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~~-  128 (210)
                      .|+.+.+..|.|..-..  .+....|..+++|+.|||..|-++....    ..++.+++|+.+++++|.+..-.. ..+ 
T Consensus       186 ~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga-~a~~  262 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA-IAFV  262 (382)
T ss_pred             ccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH-HHHH
Confidence            37777777776654321  1222556667777777777776665432    235556677777777777766543 221 


Q ss_pred             ----ccCCCcCEEeeeCCCCCCccchH-HHHHHhCcCcccccCCCCCHHH
Q psy4162         129 ----RRVNSLRTLSLYGNPIEKIREYR-AVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       129 ----~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                          ...|+|+.+.+.+|.++...... .......|.|..|++++|...+
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e  312 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGE  312 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccc
Confidence                23567777777777776442211 1234456777778887777643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.00026  Score=49.26  Aligned_cols=99  Identities=13%  Similarity=0.207  Sum_probs=44.1

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      +|+.+.+.. .+..+..      ..|..+..|+.+.+..+ +..+....|..+..++.+.+.. .+..++. ..+..++.
T Consensus        13 ~l~~i~~~~-~~~~I~~------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~   82 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGE------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTN   82 (129)
T ss_dssp             T--EEEETS-T--EE-T------TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TT
T ss_pred             CCCEEEECC-CeeEeCh------hhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-cccccccc
Confidence            366666553 4555554      55666666666666553 6555555566665666666643 4444443 45555666


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      +..+.+..+ +..++.   ..+... .++.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~---~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS---SSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHT---TTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEch---hhhcCC-CceEEEEC
Confidence            666666544 444443   234444 45554443

>KOG1909|consensus

Probab=97.38  E-value=0.00034  Score=56.34  Aligned_cols=123  Identities=18%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCccccc--
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSV--  125 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~--  125 (210)
                      -+.|+++..+.|++..-+..  .+...|...+.|+.+.++.|.|..-..    ..+..+++|+.|+|+.|.++....+  
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~--~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGAT--ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CcceEEEEeeccccccccHH--HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            34577777777777664431  111567777889999999998765332    2367899999999999998875431  


Q ss_pred             -cccccCCCcCEEeeeCCCCCCccchH--HHHHHhCcCcccccCCCCCHHHHHH
Q psy4162         126 -FVLRRVNSLRTLSLYGNPIEKIREYR--AVVSTMIPQLVTLDSVFILPSEKQE  176 (210)
Q Consensus       126 -~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~  176 (210)
                       ..+..++.|+.+++++|.++.-....  ...-...|.|+.|.+.+|.+.....
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence             45677889999999999998654321  1223447899999999998755543

>KOG3665|consensus

Probab=97.32  E-value=0.00013  Score=65.03  Aligned_cols=125  Identities=17%  Similarity=0.131  Sum_probs=88.3

Q ss_pred             CCCccEEEccCCccc--cccCCchhhhhccCCCCCCCEEECcCCCCCcCC-cccccCCCCccEEEccCCccCcccccccc
Q psy4162          52 RYDTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQIEEYLSVFVL  128 (210)
Q Consensus        52 l~~L~~L~ls~n~l~--~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  128 (210)
                      ..+|+.|++++...-  +++.      ..-.-+|.|+.|.+++-.+..-. ...+..+++|..||+++++++.+..   +
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~------kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---I  191 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPK------KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---I  191 (699)
T ss_pred             HHhhhhcCccccchhhccHHH------HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---H
Confidence            345888888885532  2221      33344689999999886664432 2335678899999999999998853   6


Q ss_pred             ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHHHHHHHHHhhhhc
Q psy4162         129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRSY  187 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  187 (210)
                      +.+++|+.|.+.+=.+..-.+.  ..+..+++|+.||++.........+-...-.|.+.
T Consensus       192 S~LknLq~L~mrnLe~e~~~~l--~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESYQDL--IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             hccccHHHHhccCCCCCchhhH--HHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            7899999999988888765442  35888999999999888765555444445555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.31  E-value=0.00046  Score=47.96  Aligned_cols=97  Identities=22%  Similarity=0.261  Sum_probs=54.8

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .++.+|+.+.+..+ +..+..      ..|..++.++.+.+.. .+..++...|..+.+++.+.+..+ +..++. ..+.
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~------~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~-~~f~  101 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGD------NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGS-SSFS  101 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-T------TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHT-TTTT
T ss_pred             cccccccccccccc-ccccce------eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEch-hhhc
Confidence            56667888888775 777776      7788887888888865 666677777888888888888765 666664 6677


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL  161 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L  161 (210)
                      +. .+..+.+.. .+..++.   ..+.++++|
T Consensus       102 ~~-~l~~i~~~~-~~~~i~~---~~F~~~~~l  128 (129)
T PF13306_consen  102 NC-NLKEINIPS-NITKIEE---NAFKNCTKL  128 (129)
T ss_dssp             T--T--EEE-TT-B-SS-------GGG-----
T ss_pred             CC-CceEEEECC-CccEECC---ccccccccC
Confidence            76 788888765 5555554   356666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.11  E-value=0.0012  Score=55.05  Aligned_cols=15  Identities=27%  Similarity=0.091  Sum_probs=12.4

Q ss_pred             CcceeCCCCCccccc
Q psy4162          14 KIPLDLSFQQIQSLD   28 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~   28 (210)
                      ...|++++|.|+.+|
T Consensus        54 l~~L~Is~c~L~sLP   68 (426)
T PRK15386         54 SGRLYIKDCDIESLP   68 (426)
T ss_pred             CCEEEeCCCCCcccC
Confidence            456999999888887

>KOG2739|consensus

Probab=96.83  E-value=0.00091  Score=51.82  Aligned_cols=87  Identities=20%  Similarity=0.217  Sum_probs=63.6

Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccc-cccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV-LRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL  161 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L  161 (210)
                      ..|+.+.+.+..++++..  +..+++|+.|.++.|.......+.. ...+|+|+++++++|+++.+...  ..++.+.+|
T Consensus        43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl--~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL--RPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc--chhhhhcch
Confidence            456666676777777665  7789999999999995444332222 24459999999999999865432  247788889


Q ss_pred             ccccCCCCCHHH
Q psy4162         162 VTLDSVFILPSE  173 (210)
Q Consensus       162 ~~L~l~~~~~~~  173 (210)
                      ..||+..|.+..
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            999998887644

>KOG2123|consensus

Probab=96.78  E-value=8.4e-05  Score=58.29  Aligned_cols=91  Identities=22%  Similarity=0.183  Sum_probs=76.1

Q ss_pred             CCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162          82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL  161 (210)
Q Consensus        82 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L  161 (210)
                      +...+.|+.-++.+..+.-  ...++.|+.|.|+-|.|+++.+   +..+++|..|+|..|.|.++...  ..+.++|+|
T Consensus        18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL--~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDEL--EYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHH--HHHhcCchh
Confidence            4567778888888887755  6779999999999999999865   78899999999999999988663  468999999


Q ss_pred             ccccCCCCCHHHHHHHHH
Q psy4162         162 VTLDSVFILPSEKQETNA  179 (210)
Q Consensus       162 ~~L~l~~~~~~~~~~~~~  179 (210)
                      +.|=+..|+.......+.
T Consensus        91 r~LWL~ENPCc~~ag~nY  108 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNY  108 (388)
T ss_pred             hhHhhccCCcccccchhH
Confidence            999999998766554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.55  E-value=0.009  Score=49.98  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC-CCCcCCcccccCCCCccEEEccCC-ccCccc
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKN-QIEEYL  123 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~  123 (210)
                      +..++.|++++|.++.+|.+          ..+|+.|.++++ .++.++.. +  ..+|+.|.+++| .+..++
T Consensus        51 ~~~l~~L~Is~c~L~sLP~L----------P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVL----------PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCC----------CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc
Confidence            56689999999988888742          146888888764 55555532 2  347778888777 454444

>KOG3763|consensus

Probab=96.30  E-value=0.0035  Score=53.48  Aligned_cols=90  Identities=29%  Similarity=0.340  Sum_probs=64.2

Q ss_pred             CCCCCCEEECcCCCCCcCCc--ccccCCCCccEEEccCC--ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHH-
Q psy4162          81 DPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKN--QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS-  155 (210)
Q Consensus        81 ~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-  155 (210)
                      ..+.+..++|++|++..+..  ..-...++|+.|+|++|  .+....++..+++++ |++|.+.+||+...-..|.+.+ 
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~-Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP-LEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCC-HHHeeecCCccccchhhhHHHHH
Confidence            34677888899998877754  11234678999999999  555555555666654 9999999999986544444444 


Q ss_pred             ---HhCcCcccccCCCCCH
Q psy4162         156 ---TMIPQLVTLDSVFILP  171 (210)
Q Consensus       156 ---~~l~~L~~L~l~~~~~  171 (210)
                         ...|+|..||....+.
T Consensus       295 ~i~~~FPKL~~LDG~ev~~  313 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVEVQP  313 (585)
T ss_pred             HHHHhcchheeecCcccCc
Confidence               4899999998866654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.05  E-value=0.019  Score=45.29  Aligned_cols=121  Identities=14%  Similarity=0.086  Sum_probs=72.6

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCccc-------------ccCCCCccEEEccC
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNM-------------FTNFPNLKILYLHK  116 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-------------~~~~~~L~~L~l~~  116 (210)
                      .+++.|+.++||+|.+..-.+  ....+.++....|..|.+++|.+..+...-             ...-+.|+....+.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~--e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFP--EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             hcCCcceeeeccccccCcccc--hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            457788888888888765322  111144555567788888887765543211             12345677777777


Q ss_pred             CccCccccc---cccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         117 NQIEEYLSV---FVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       117 n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |++...+..   ..+.....|..+.+..|.|..  +.......+..+.+|+.||++.|...
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            777655421   112223567777777777763  34433445666777888888777653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0086  Score=28.13  Aligned_cols=16  Identities=25%  Similarity=0.169  Sum_probs=11.3

Q ss_pred             ccEEEccCCccccccC
Q psy4162          55 TRSLWLSHNKISLVYG   70 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~   70 (210)
                      |+.|++++|+++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            6777777777776663

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.46  E-value=0.031  Score=44.14  Aligned_cols=146  Identities=16%  Similarity=0.059  Sum_probs=92.5

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccc----cC-CchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YG-LDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~----~~-l~~~~~~~~~~l~~L~~L   88 (210)
                      .+.+|+|+|.|..-....+++.-.             .-.+|+..++++-.....    +. +.-+ ...+-.|++|+.+
T Consensus        32 ~~evdLSGNtigtEA~e~l~~~ia-------------~~~~L~vvnfsd~ftgr~kde~~~~L~~L-l~aLlkcp~l~~v   97 (388)
T COG5238          32 LVEVDLSGNTIGTEAMEELCNVIA-------------NVRNLRVVNFSDAFTGRDKDELYSNLVML-LKALLKCPRLQKV   97 (388)
T ss_pred             eeEEeccCCcccHHHHHHHHHHHh-------------hhcceeEeehhhhhhcccHHHHHHHHHHH-HHHHhcCCcceee
Confidence            345888888887655544431111             112377777766543331    10 1111 2567788999999


Q ss_pred             ECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccccccc-------------ccCCCcCEEeeeCCCCCCccc-h
Q psy4162          89 DLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSVFVL-------------RRVNSLRTLSLYGNPIEKIRE-Y  150 (210)
Q Consensus        89 ~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~~-~  150 (210)
                      +||.|.+..-.+    ..++....|.+|.+++|.+..+.. ..+             ..-|.|+.+....|.+..-+. +
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence            999998866433    234567789999999998876653 322             355789999999999875433 2


Q ss_pred             HHHHHHhCcCcccccCCCCCHHHH
Q psy4162         151 RAVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       151 ~~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      ....+..-..|+.+-+..|.+...
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpe  200 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPE  200 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcc
Confidence            223344445788888888876544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.40  E-value=0.012  Score=25.84  Aligned_cols=16  Identities=31%  Similarity=0.432  Sum_probs=7.4

Q ss_pred             CccEEEccCCcccccc
Q psy4162          54 DTRSLWLSHNKISLVY   69 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~   69 (210)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3666666666666543

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.20  E-value=0.007  Score=28.44  Aligned_cols=17  Identities=29%  Similarity=0.577  Sum_probs=9.3

Q ss_pred             CCEEECcCCCCCcCCcc
Q psy4162          85 IGWIDLSFNNIKNVDKN  101 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~  101 (210)
                      |++|++++|+++.+++.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.83  E-value=0.026  Score=27.50  Aligned_cols=19  Identities=21%  Similarity=0.241  Sum_probs=9.9

Q ss_pred             CCCCEEECcCCCCCcCCcc
Q psy4162          83 DLIGWIDLSFNNIKNVDKN  101 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~  101 (210)
                      ++|+.|++++|+++.++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.83  E-value=0.026  Score=27.50  Aligned_cols=19  Identities=21%  Similarity=0.241  Sum_probs=9.9

Q ss_pred             CCCCEEECcCCCCCcCCcc
Q psy4162          83 DLIGWIDLSFNNIKNVDKN  101 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~  101 (210)
                      ++|+.|++++|+++.++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555544

>KOG2120|consensus

Probab=94.61  E-value=0.0019  Score=51.34  Aligned_cols=124  Identities=18%  Similarity=0.079  Sum_probs=68.4

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCccccccccccCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFVLRRVN  132 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~  132 (210)
                      .++.+||+...|+.-.- .    ..++.+.+|+.|.+.++++.......++.-..|..|+++.+ ++++..--..+..+.
T Consensus       186 Rlq~lDLS~s~it~stl-~----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL-H----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHH-H----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            37888888887775321 1    33445566666666666665544444455556666666554 344433112245566


Q ss_pred             CcCEEeeeCCCCCCc------------------cchH--------HHHHHhCcCcccccCCCCCHHHHHHHHHHHH
Q psy4162         133 SLRTLSLYGNPIEKI------------------REYR--------AVVSTMIPQLVTLDSVFILPSEKQETNALNA  182 (210)
Q Consensus       133 ~L~~L~l~~n~l~~~------------------~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  182 (210)
                      .|..|+++++.+...                  ..+|        ....+++|+|..||++.+-.....-+.++..
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            666666666643211                  0011        1245678888888887776544444444443

>KOG0473|consensus

Probab=94.58  E-value=0.00069  Score=51.98  Aligned_cols=88  Identities=20%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             cCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162          79 ILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI  158 (210)
Q Consensus        79 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l  158 (210)
                      +......+.||++.|++..+... |+-+..+..++++.|++...+  .-++.+..+..+++..|..+..|.    .+...
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~--~d~~q~~e~~~~~~~~n~~~~~p~----s~~k~  110 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLP--KDAKQQRETVNAASHKNNHSQQPK----SQKKE  110 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhCh--hhHHHHHHHHHHHhhccchhhCCc----ccccc
Confidence            33345677778888877777665 666777777888888777776  335566667777777777777776    67777


Q ss_pred             cCcccccCCCCCHHH
Q psy4162         159 PQLVTLDSVFILPSE  173 (210)
Q Consensus       159 ~~L~~L~l~~~~~~~  173 (210)
                      |+++.++..+++...
T Consensus       111 ~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFFR  125 (326)
T ss_pred             CCcchhhhccCcchH
Confidence            778888877776533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.27  E-value=0.037  Score=26.97  Aligned_cols=18  Identities=33%  Similarity=0.265  Sum_probs=16.3

Q ss_pred             CCccEEEccCCccccccC
Q psy4162          53 YDTRSLWLSHNKISLVYG   70 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~   70 (210)
                      .+|+.|++++|+|+.++.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            459999999999999986

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.27  E-value=0.037  Score=26.97  Aligned_cols=18  Identities=33%  Similarity=0.265  Sum_probs=16.3

Q ss_pred             CCccEEEccCCccccccC
Q psy4162          53 YDTRSLWLSHNKISLVYG   70 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~   70 (210)
                      .+|+.|++++|+|+.++.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            459999999999999986

>KOG0473|consensus

Probab=94.05  E-value=0.00086  Score=51.46  Aligned_cols=104  Identities=17%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      .+-|++...++.++...+..+..                 .+.||++.|++-.+-       ..|+-+..+..++++.|+
T Consensus        21 ~tc~~s~s~~s~~~v~ei~~~kr-----------------~tvld~~s~r~vn~~-------~n~s~~t~~~rl~~sknq   76 (326)
T KOG0473|consen   21 ETCDLSLSELSEIPVREIASFKR-----------------VTVLDLSSNRLVNLG-------KNFSILTRLVRLDLSKNQ   76 (326)
T ss_pred             cccCCCHHHhcccchhhhhccce-----------------eeeehhhhhHHHhhc-------cchHHHHHHHHHhccHhh
Confidence            44566666667777655554444                 899999999988775       566677888999999999


Q ss_pred             CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCC
Q psy4162          95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIE  145 (210)
Q Consensus        95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~  145 (210)
                      +..++.+ ++....+..+++-.|..+..|  ..++..+.++.+++.+|++.
T Consensus        77 ~~~~~~d-~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   77 IKFLPKD-AKQQRETVNAASHKNNHSQQP--KSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HhhChhh-HHHHHHHHHHHhhccchhhCC--ccccccCCcchhhhccCcch
Confidence            9988877 677778888888888888887  67888999999999999864

>KOG3864|consensus

Probab=92.45  E-value=0.031  Score=42.03  Aligned_cols=83  Identities=20%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCc-cCcccccccccc-CCCcCEEeeeCCC-CCCccchHHHHHHhCcC
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRR-VNSLRTLSLYGNP-IEKIREYRAVVSTMIPQ  160 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~-l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~  160 (210)
                      .++.++-++..|....-..+.+++.++.|.+..+. +..+. ++.+++ .++|+.|++++|+ |++-.-   ..+..+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHH---HHHHHhhh
Confidence            46788888888888777668888888888887774 44544 244444 5799999999887 443332   45777777


Q ss_pred             cccccCCCCC
Q psy4162         161 LVTLDSVFIL  170 (210)
Q Consensus       161 L~~L~l~~~~  170 (210)
                      |+.|++..-+
T Consensus       178 Lr~L~l~~l~  187 (221)
T KOG3864|consen  178 LRRLHLYDLP  187 (221)
T ss_pred             hHHHHhcCch
Confidence            7777776554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=92.23  E-value=0.14  Score=25.08  Aligned_cols=18  Identities=39%  Similarity=0.399  Sum_probs=12.9

Q ss_pred             CccEEEccCCccccccCC
Q psy4162          54 DTRSLWLSHNKISLVYGL   71 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l   71 (210)
                      +|+.|++++|+|+.+.++
T Consensus         3 ~L~~L~L~~NkI~~IEnL   20 (26)
T smart00365        3 NLEELDLSQNKIKKIENL   20 (26)
T ss_pred             ccCEEECCCCccceecCc
Confidence            477777877777777653

>KOG1947|consensus

Probab=89.62  E-value=0.27  Score=41.75  Aligned_cols=16  Identities=25%  Similarity=0.113  Sum_probs=7.5

Q ss_pred             HHhCcCcccccCCCCC
Q psy4162         155 STMIPQLVTLDSVFIL  170 (210)
Q Consensus       155 l~~l~~L~~L~l~~~~  170 (210)
                      ...++.|+.|++..+.
T Consensus       291 ~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCH  306 (482)
T ss_pred             HHhcCcccEEeeecCc
Confidence            3444445555554443

>KOG1947|consensus

Probab=87.46  E-value=0.44  Score=40.45  Aligned_cols=117  Identities=21%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             CCCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCccccc-CCCCccEEEccCCc-cCccccc
Q psy4162          50 VGRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFT-NFPNLKILYLHKNQ-IEEYLSV  125 (210)
Q Consensus        50 ~~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~~~~L~~L~l~~n~-i~~~~~~  125 (210)
                      ..++.|+.|+++++ ......+....  .....+.+|+.++++++. ++...-..+. .++.|+.|.+.++. ++...-.
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~  288 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV  288 (482)
T ss_pred             hhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence            66778888888873 11111110000  234455788899998886 5554432233 37899999987776 5655422


Q ss_pred             cccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162         126 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       126 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      .....++.|+.|+++++.......... ....+++++.|.+...
T Consensus       289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  289 SIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhhhhc
Confidence            334568889999999887653333222 2555777666554433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.33  E-value=0.43  Score=22.54  Aligned_cols=14  Identities=36%  Similarity=0.378  Sum_probs=7.5

Q ss_pred             CccEEEccCCcccc
Q psy4162          54 DTRSLWLSHNKISL   67 (210)
Q Consensus        54 ~L~~L~ls~n~l~~   67 (210)
                      +|+.|++++|+|+.
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            46666666666654

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.31  E-value=0.6  Score=22.85  Aligned_cols=17  Identities=12%  Similarity=0.233  Sum_probs=9.1

Q ss_pred             CCCEEECcCCCCCcCCc
Q psy4162          84 LIGWIDLSFNNIKNVDK  100 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~  100 (210)
                      +|+.|++++|+++.++.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45555555555555543

>smart00446 LRRcap occurring C-terminal to leucine-rich repeats

Probab=85.71  E-value=0.7  Score=22.61  Aligned_cols=22  Identities=36%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             cchHHHHHHhCcCcccccCCCC
Q psy4162         148 REYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       148 ~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      +.||..++..+|+|+.||....
T Consensus         2 ~~YR~~Vi~~LPqL~~LD~~~~   23 (26)
T smart00446        2 AHYREKVIRLLPQLRKLDXXXX   23 (26)
T ss_pred             ccHHHHHHHHCCccceeccccc
Confidence            3578899999999999998543

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.

>KOG3864|consensus

Probab=85.38  E-value=0.1  Score=39.34  Aligned_cols=84  Identities=20%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCccccc-CCCCccEEEccCC-ccCccccccccccC
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFT-NFPNLKILYLHKN-QIEEYLSVFVLRRV  131 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~~~~L~~L~l~~n-~i~~~~~~~~~~~l  131 (210)
                      ++.+|-++..|...--      ..+..++.++.|.+.+++ +....-..++ ..++|+.|++++| +|++.. +..+..+
T Consensus       103 IeaVDAsds~I~~eGl------e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~l  175 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGL------EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKL  175 (221)
T ss_pred             EEEEecCCchHHHHHH------HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHh
Confidence            7788888888776543      567777888888777663 3222111122 3579999999987 588776 4778888


Q ss_pred             CCcCEEeeeCCCCC
Q psy4162         132 NSLRTLSLYGNPIE  145 (210)
Q Consensus       132 ~~L~~L~l~~n~l~  145 (210)
                      ++|+.|.+.+=+..
T Consensus       176 knLr~L~l~~l~~v  189 (221)
T KOG3864|consen  176 KNLRRLHLYDLPYV  189 (221)
T ss_pred             hhhHHHHhcCchhh
Confidence            88888887765543

>KOG3763|consensus

Probab=80.46  E-value=1.1  Score=38.85  Aligned_cols=68  Identities=25%  Similarity=0.121  Sum_probs=48.0

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC--CCCcCCcccccCCCCccEEEccCCccCc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN--NIKNVDKNMFTNFPNLKILYLHKNQIEE  121 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~~~L~~L~l~~n~i~~  121 (210)
                      ...+.+..+.|++|++..+..+..+.    ...|.|..|+|++|  .+.....-.--...-|+.|.+.+|.+.+
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~ssls----q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLS----QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHH----HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            45666899999999999998876553    22378999999999  4444322101123457889999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		3e-04
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		3e-04

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 49  LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
           L G  + R L L  N I  +  LD++        D +  + +S+N I ++         N
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVA-------DTLEELWISYNQIASLSG--IEKLVN 116
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-------EKIREYRAVVSTMIPQL 161
           L++LY+  N+I  +  +  L  ++ L  L L GNP+           EYR  V   +P L
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176
Query: 162 VTLDSVFILPSEKQETN 178
             LD + +   E+++ N
Sbjct: 177 KKLDGMPVDVDEREQAN 193

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 49  LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
           L G  + R L L  N I  +  LD++        D +  + +S+N I ++         N
Sbjct: 67  LSGMENLRILSLGRNLIKKIENLDAVA-------DTLEELWISYNQIASLSG--IEKLVN 117
Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-------EKIREYRAVVSTMIPQL 161
           L++LY+  N+I  +  +  L  ++ L  L L GNP+           EYR  V   +P L
Sbjct: 118 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 177
Query: 162 VTLDSVFILPSEKQETN 178
             LD + +   E+++ N
Sbjct: 178 KKLDGMPVDVDEREQAN 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-25
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-21
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-04

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 95.5 bits (238), Expect = 4e-25
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            ++  S N+I  + G   L     L         ++ N I  + + +    P+L  L L 
Sbjct: 45  DAIDFSDNEIRKLDGFPLLRRLKTLL--------VNNNRICRIGEGLDQALPDLTELILT 96

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
            N + E   +  L  + SL  L +  NP+   + YR  V   +PQ+  LD   +   E+Q
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156

Query: 176 ETNAL 180
           E   +
Sbjct: 157 EAEKM 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 93.3 bits (232), Expect = 2e-24
 Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 11/173 (6%)

Query: 7   TSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS 66
           + +D + +I L+L  +   ++ ++ +   K N  ++       V   +   L L +  + 
Sbjct: 6   SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFV---NLEFLSLINVGLI 62

Query: 67  LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
            V  L  L          +  ++LS N I      +    PNL  L L  N++++  ++ 
Sbjct: 63  SVSNLPKLPK--------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

Query: 127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNA 179
            L+++  L++L L+   +  + +YR  V  ++PQL  LD       E  +++A
Sbjct: 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 167

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 87.8 bits (218), Expect = 2e-22
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L   +  ++ +  L  L     L+        LS N +    + +    PNL  L L 
Sbjct: 45  EFLSTINVGLTSIANLPKLNKLKKLE--------LSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV 167
            N+I++  ++  L+++ +L++L L+   +  + +YR  V  ++PQL  LD  
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 24/147 (16%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILD---------------PDLIGWIDLSFNNIKNVDK 100
           + L LS N I  +  L  + +  IL                 D +  + +S+N I ++  
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110

Query: 101 NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR-------EYRAV 153
                  NL++LY+  N+I  +  +  L  ++ L  L L GNP+           EYR  
Sbjct: 111 --IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

Query: 154 VSTMIPQLVTLDSVFILPSEKQETNAL 180
           V   +P L  LD + +   E+++ N  
Sbjct: 169 VVKRLPNLKKLDGMPVDVDEREQANVA 195

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 89  DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
                 I+ +D  + +     K L L  N IE    +  L  + +LR LSL  N I+KI
Sbjct: 31  HGMIPPIEKMDATL-STLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKKI 85

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.5 bits (190), Expect = 7e-17
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 40  HRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILD---------PDLIG---- 86
             L E+  + +   D R L L+H  ++++  L+ L+  T LD         P  +     
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487

Query: 87  --WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
              +  S N ++NVD     N P L+ L L  N++++  ++  L     L  L+L GN +
Sbjct: 488 LEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 145 EKIREYRAVVSTMIPQLVTLDS 166
            +    +  ++ M+P + ++ +
Sbjct: 546 CQEEGIQERLAEMLPSVSSILT 567

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 29/161 (18%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL----------GESPPMLVGRYDTRSLWLSHNKIS 66
           L+L   ++QSL      KL   + +L          G       G    + L LS N + 
Sbjct: 33  LELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 67  LV----YGLDSLVH--------RTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPN 108
            +     GL+ L H        + + +  +        ++D+S  + +     +F    +
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           L++L +  N  +E     +   + +L  L L    +E++  
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVH--------RTILDPDLIG------WIDLSFNNIK 96
             L +SH    +       GL SL          +    PD+        ++DLS   ++
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 97  NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
            +    F +  +L++L +  N     L  F  + +NSL+ L    N I   ++    +  
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQH 245

Query: 157 MIPQLVTLD 165
               L  L+
Sbjct: 246 FPSSLAFLN 254

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 54  DTRSLWLSHNKISLVYG--LDSLVHRTILDPDLIGWIDLSFNNI--KNVDKNMFTNFPNL 109
               L L  NK+  +     D L   T L         LS N +  K           +L
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKL--------SLSSNGLSFKGCCSQSDFGTTSL 80

Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
           K L L  N +    S F    +  L  L    + ++++ E+   +S  +  L+ LD
Sbjct: 81  KYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLS--LRNLIYLD 132

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 34/109 (31%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDLS  Q++ L   A   L      L             + L +SHN    +       L
Sbjct: 180 LDLSQCQLEQLSPTAFNSL----SSL-------------QVLNMSHNNFFSLDTFPYKCL 222

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-NLKILYLHKNQI 119
           +SL             +D S N+I    K    +FP +L  L L +N  
Sbjct: 223 NSLQV-----------LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 34/133 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L ++   + ++  +AV+ L      L             R L LS+N IS +     + L
Sbjct: 229 LSITHCNLTAVPYLAVRHLV----YL-------------RFLNLSYNPISTIEGSMLHEL 271

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
             L             I L    +  V+   F     L++L +  NQ+   L   V   V
Sbjct: 272 LRLQE-----------IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSV 319

Query: 132 NSLRTLSLYGNPI 144
            +L TL L  NP+
Sbjct: 320 GNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 34/138 (24%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDL   +I++L++                 P L        L L+ N +S V       L
Sbjct: 37  LDLGKNRIKTLNQDEFASF-----------PHL------EELELNENIVSAVEPGAFNNL 79

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +L             + L  N +K +   +FT   NL  L + +N+I   L  ++ + +
Sbjct: 80  FNLRT-----------LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDL 127

Query: 132 NSLRTLSLYGNPIEKIRE 149
            +L++L +  N +  I  
Sbjct: 128 YNLKSLEVGDNDLVYISH 145

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 34/136 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L+L+   + +++  A   L      L             R+L L  N++ L+      GL
Sbjct: 61  LELNENIVSAVEPGAFNNLF----NL-------------RTLGLRSNRLKLIPLGVFTGL 103

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +L             +D+S N I  +   MF +  NLK L +  N +   +S      +
Sbjct: 104 SNLTK-----------LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGL 151

Query: 132 NSLRTLSLYGNPIEKI 147
           NSL  L+L    +  I
Sbjct: 152 NSLEQLTLEKCNLTSI 167

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
           L L    I ++   + ++L   +  L            P  +   +  SL ++H  ++ V
Sbjct: 181 LRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 69  --YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
               +  LV+   L+        LS+N I  ++ +M      L+ + L   Q+   +  +
Sbjct: 240 PYLAVRHLVYLRFLN--------LSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPY 290

Query: 127 VLRRVNSLRTLSLYGNPIEKIRE 149
             R +N LR L++ GN +  + E
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 34/133 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LD+S  +I  L     Q L    + L             +SL +  N +  +      GL
Sbjct: 109 LDISENKIVILLDYMFQDL----YNL-------------KSLEVGDNDLVYISHRAFSGL 151

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
           +SL             + L   N+ ++     ++   L +L L    I   +  +  +R+
Sbjct: 152 NSLEQ-----------LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRL 199

Query: 132 NSLRTLSLYGNPI 144
             L+ L +   P 
Sbjct: 200 YRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 54  DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
           +TR L L  N+I  +   D       L+      ++L+ N +  V+   F N  NL+ L 
Sbjct: 33  ETRLLDLGKNRIKTLNQ-DEFASFPHLE-----ELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           L  N+++  + + V   +++L  L +  N I  + +
Sbjct: 87  LRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLD 121

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 36/151 (23%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L L    + S+   A+  L             L        L L H  I+ +       L
Sbjct: 157 LTLEKCNLTSIPTEALSHL-----------HGL------IVLRLRHLNINAIRDYSFKRL 199

Query: 72  DSLVH--------RTILDPDLIG-----WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
             L             + P+ +       + ++  N+  V      +   L+ L L  N 
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 119 IEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           I   +   +L  +  L+ + L G  +  +  
Sbjct: 260 I-STIEGSMLHELLRLQEIQLVGGQLAVVEP 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 82  PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
           P     +DL  N IK ++++ F +FP+L+ L L++N +   +       + +LRTL L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 142 NPIEKIRE 149
           N ++ I  
Sbjct: 90  NRLKLIPL 97

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 54  DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
            T  L LSHN +S +    +    T L       + LS N++  +    F   PNL+ L 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLH-----SLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           L  N +   L  F+   + +L  L LY N I  +  
Sbjct: 95  LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDR 129

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 4e-13
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 33/138 (23%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDLS   +  L           +  L              SL LSHN ++ +       +
Sbjct: 44  LDLSHNNLSRLRAEWTPT---RLTNL-------------HSLLLSHNHLNFISSEAFVPV 87

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +L +           +DLS N++  +D+ +F++   L++L L+ N I   +       +
Sbjct: 88  PNLRY-----------LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDM 135

Query: 132 NSLRTLSLYGNPIEKIRE 149
             L+ L L  N I +   
Sbjct: 136 AQLQKLYLSQNQISRFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 39/138 (28%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDLS   + +LD+     L+     L               L L +N I +V       +
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQ----AL-------------EVLLLYNNHIVVVDRNAFEDM 135

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF---PNLKILYLHKNQIEEYLSVFVL 128
             L             + LS N I      +  +    P L +L L  N++++ L +  L
Sbjct: 136 AQLQK-----------LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL 183

Query: 129 RRVNSL--RTLSLYGNPI 144
           +++ +     L L+ NP+
Sbjct: 184 QKLPAWVKNGLYLHNNPL 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 19/142 (13%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL---------GESPPMLVGRYDTRSLWLSHNKISL 67
           L L    I+S+   A  ++ P++ RL           S     G ++ + L L    I  
Sbjct: 152 LWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 68  VYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV 127
           +  L  LV    L+        +S N+   +    F    +LK L++  +Q+   +    
Sbjct: 211 MPNLTPLVGLEELE--------MSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNA 261

Query: 128 LRRVNSLRTLSLYGNPIEKIRE 149
              + SL  L+L  N +  +  
Sbjct: 262 FDGLASLVELNLAHNNLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 17/102 (16%)

Query: 54  DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
           +TR L L  N I ++       L  L             + L  N+I+ ++   F    +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLE-----------VLQLGRNSIRQIEVGAFNGLAS 124

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
           L  L L  N +   +       ++ LR L L  NPIE I  Y
Sbjct: 125 LNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSY 165

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 17  LDLS-FQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKISLV- 68
           LDL   ++++ + + A + L  N+  L       +  P L        L +S N    + 
Sbjct: 176 LDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 69  ----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
               +GL SL             + +  + +  +++N F    +L  L L  N +   L 
Sbjct: 235 PGSFHGLSSLKK-----------LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282

Query: 125 VFVLRRVNSLRTLSLYGNPI 144
             +   +  L  L L+ NP 
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 35/137 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L+L    IQ +     + L             L        L L  N I  +      GL
Sbjct: 80  LNLMENNIQMIQADTFRHL-----------HHL------EVLQLGRNSIRQIEVGAFNGL 122

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            SL             ++L  N +  +    F     L+ L+L  N IE  +  +   RV
Sbjct: 123 ASLNT-----------LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRV 170

Query: 132 NSLRTLSLYG-NPIEKI 147
            SL  L L     +E I
Sbjct: 171 PSLMRLDLGELKKLEYI 187

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 88  IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +  +   +  V + +     N + L L +N I+  +     R ++ L  L L  N I +I
Sbjct: 59  VVCTRRGLSEVPQGIP---SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 148 RE 149
             
Sbjct: 115 EV 116

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           R L L+   +  +  L  L+    LD        LS N++  +    F    +L+ L++ 
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELD--------LSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           ++QI + +       + SL  ++L  N +  +  
Sbjct: 240 QSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 17/99 (17%)

Query: 54  DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
           +TR L L  N+I ++       L  L             + LS N+I+ ++   F    N
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLE-----------ILQLSRNHIRTIEIGAFNGLAN 113

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L  L L  N++   +       ++ L+ L L  NPIE I
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 17  LDLSFQ-QIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKISLV- 68
           LDL    ++  + + A + L  N+  L          P L        L LS N +S + 
Sbjct: 165 LDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 69  ----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
                GL  L             + +  + I+ +++N F N  +L  + L  N +   L 
Sbjct: 224 PGSFQGLMHLQK-----------LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 125 VFVLRRVNSLRTLSLYGNPI 144
             +   ++ L  + L+ NP 
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 35/139 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L+L   QIQ +   + + L+     L               L LS N I  +      GL
Sbjct: 69  LNLHENQIQIIKVNSFKHLR----HL-------------EILQLSRNHIRTIEIGAFNGL 111

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +L             ++L  N +  +    F     LK L+L  N IE  +  +   R+
Sbjct: 112 ANLNT-----------LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRI 159

Query: 132 NSLRTLSLYG-NPIEKIRE 149
            SLR L L     +  I E
Sbjct: 160 PSLRRLDLGELKRLSYISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 88  IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +     N++ V   +     N ++L LH+NQI+  + V   + +  L  L L  N I  I
Sbjct: 48  VICVRKNLREVPDGIS---TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 148 RE 149
             
Sbjct: 104 EI 105

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 54  DTRSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
             +SL LS+N+I+ +    L   V+   L         L+ N I  ++++ F++  +L+ 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQAL--------VLTSNGINTIEEDSFSSLGSLEH 104

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA 152
           L L  N +   LS    + ++SL  L+L GNP + + E   
Sbjct: 105 LDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 40/192 (20%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI------SLVYG 70
           LDLS+  + +L     + L      L               L L  N        SL   
Sbjct: 105 LDLSYNYLSNLSSSWFKPLS----SL-------------TFLNLLGNPYKTLGETSLFSH 147

Query: 71  LDSLVHRTILDPDLIGWI--------------DLSFNNIKNVDKNMFTNFPNLKILYLHK 116
           L  L    + + D    I              ++  +++++ +     +  N+  L LH 
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFILPSEK 174
            Q    L    +   +S+  L L    ++     E     +  + +  T  +V I     
Sbjct: 208 KQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 175 QETNALNAEIRS 186
            +   L  +I  
Sbjct: 267 FQVMKLLNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 58/161 (36%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDLS  +I  +    +Q+       L             ++L L+ N I+ +       L
Sbjct: 57  LDLSNNRITYISNSDLQRC----VNL-------------QALVLTSNGINTIEEDSFSSL 99

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE---------- 121
            SL H           +DLS+N + N+  + F    +L  L L  N  +           
Sbjct: 100 GSLEH-----------LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 122 ---------------YLSVFVLRRVNSLRTLSLYGNPIEKI 147
                           +       +  L  L +  + ++  
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 56  RSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
             L L   +  L+    +D       L+          F+ +   + N        + + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +    + + + +    +++ L  L    N ++ +
Sbjct: 261 ITDESLFQVMKLL--NQISGLLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 21/129 (16%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
           L L  +Q   L ++ V         +               L L    +       L + 
Sbjct: 203 LILHMKQHILLLEIFVDVT----SSV-------------ECLELRDTDLDTFHFSELSTG 245

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
              +++       + ++  ++  V K +      L  L   +NQ+ + +   +  R+ SL
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQL-KSVPDGIFDRLTSL 303

Query: 135 RTLSLYGNP 143
           + + L+ NP
Sbjct: 304 QKIWLHTNP 312

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 13/148 (8%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            SL+L +NKI+ +  L  L     L         L  N I ++          L+ LYL 
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLS--------LEDNQISDIV--PLAGLTKLQNLYLS 186

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
           KN I +  +   L  + +L  L L+                +   +   D   + P    
Sbjct: 187 KNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

Query: 176 ETNALNAEIRSYLLPKYEKLEAATFKRT 203
           +          + LP++    +  F + 
Sbjct: 244 DDGDYEKPNVKWHLPEFTNEVSFIFYQP 271

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L+L  NK+  +  L  L     L         L  N I +++     + P L+ LYL 
Sbjct: 93  GWLFLDENKVKDLSSLKDLKKLKSLS--------LEHNGISDING--LVHLPQLESLYLG 142

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N+I     + VL R+  L TLSL  N I  I
Sbjct: 143 NNKIT---DITVLSRLTKLDTLSLEDNQISDI 171

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
               L    ++     + L     +          + ++IK+V        PN+  L+L+
Sbjct: 27  IKDNLKKKSVTDAVTQNELNSIDQII--------ANNSDIKSVQ--GIQYLPNVTKLFLN 76

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N++     +  L  + +L  L L  N ++ +
Sbjct: 77  GNKLT---DIKPLANLKNLGWLFLDENKVKDL 105

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 58  LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
                  I  ++  D+       +        L   ++ +          ++  +  + +
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDN--------LKKKSVTDAVT--QNELNSIDQIIANNS 56

Query: 118 QIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            I+   SV  ++ + ++  L L GN +  I
Sbjct: 57  DIK---SVQGIQYLPNVTKLFLNGNKLTDI 83

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 54  DTRSLWLSHNKISLVYG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
            ++ ++L  N+IS V      +  + TIL         L  N +  +D   FT    L+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILW--------LHSNVLARIDAAAFTGLALLEQ 84

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L L  N     +       +  L TL L    ++++
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 34/136 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L L    +Q L     + L      L             + L+L  N +  +       L
Sbjct: 110 LHLDRCGLQELGPGLFRGL----AAL-------------QYLYLQDNALQALPDDTFRDL 152

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +L             + L  N I +V +  F    +L  L LH+N++  ++     R +
Sbjct: 153 GNL-----------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDL 200

Query: 132 NSLRTLSLYGNPIEKI 147
             L TL L+ N +  +
Sbjct: 201 GRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 37/152 (24%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           + L   +I  +   + +    N+                  LWL  N ++ +      GL
Sbjct: 37  IFLHGNRISHVPAASFRAC-RNL----------------TILWLHSNVLARIDAAAFTGL 79

Query: 72  DSL--------VHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNLKILYLHKN 117
             L             +DP           + L    ++ +   +F     L+ LYL  N
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 118 QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            + + L     R + +L  L L+GN I  + E
Sbjct: 140 AL-QALPDDTFRDLGNLTHLFLHGNRISSVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 32/132 (24%), Positives = 46/132 (34%), Gaps = 34/132 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L L    +Q+L     + L      L               L+L  N+IS V      GL
Sbjct: 134 LYLQDNALQALPDDTFRDL----GNL-------------THLFLHGNRISSVPERAFRGL 176

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            SL             + L  N + +V  + F +   L  LYL  N +   L    L  +
Sbjct: 177 HSLDR-----------LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPL 224

Query: 132 NSLRTLSLYGNP 143
            +L+ L L  NP
Sbjct: 225 RALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 82  PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
           P     I L  N I +V    F    NL IL+LH N +   +       +  L  L L  
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89

Query: 142 NPIEKIREYRAVVSTMIPQLVTLD 165
           N   ++R         + +L TL 
Sbjct: 90  NA--QLRSVDPATFHGLGRLHTLH 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 27/133 (20%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYG-LDSL 74
           L L+  +   L+   + K  P + ++                  S+NKI  +  G  +  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKI----------------NFSNNKITDIEEGAFEGA 80

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                +         L+ N ++NV   MF    +LK L L  N+I   +       ++S+
Sbjct: 81  SGVNEIL--------LTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 135 RTLSLYGNPIEKI 147
           R LSLY N I  +
Sbjct: 132 RLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 88  IDLSFNNIKNVDKN-MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
           + L+ N    ++   +F   P L+ +    N+I + +        + +  + L  N +E 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95

Query: 147 IRE 149
           ++ 
Sbjct: 96  VQH 98

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 54  DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
           DT  L L +NKI+ +       +   L       + L  N I  +    F     L+ LY
Sbjct: 53  DTALLDLQNNKITEIKD-GDFKNLKNLH-----TLILINNKISKISPGAFAPLVKLERLY 106

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
           L KNQ++E L   + +   +L+ L ++ N I K+R+ 
Sbjct: 107 LSKNQLKE-LPEKMPK---TLQELRVHENEITKVRKS 139

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 41/157 (26%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           + ++   I ++ +     L                      L L  NKI+ V      GL
Sbjct: 176 IRIADTNITTIPQGLPPSL--------------------TELHLDGNKITKVDAASLKGL 215

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
           ++L             + LSFN+I  VD     N P+L+ L+L+ N++ +          
Sbjct: 216 NNLAK-----------LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADH 262

Query: 132 NSLRTLSLYGNPIEKIREY---RAVVSTMIPQLVTLD 165
             ++ + L+ N I  I          +T       + 
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 31/134 (23%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
           L L   +I  +   A   L     +L               L+LS N++  +      +L
Sbjct: 81  LILINNKISKISPGAFAPLV----KL-------------ERLYLSKNQLKELPEKMPKTL 123

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNS 133
                        + +  N I  V K++F     + ++ L  N ++   +     + +  
Sbjct: 124 QE-----------LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 134 LRTLSLYGNPIEKI 147
           L  + +    I  I
Sbjct: 173 LSYIRIADTNITTI 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVY------- 69
           L +   +I  + K     L    +++               + L  N +           
Sbjct: 126 LRVHENEITKVRKSVFNGL----NQM-------------IVVELGTNPLKSSGIENGAFQ 168

Query: 70  GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
           G+  L            +I ++  NI  + + +    P+L  L+L  N+I + +    L+
Sbjct: 169 GMKKLS-----------YIRIADTNITTIPQGL---PPSLTELHLDGNKITK-VDAASLK 213

Query: 130 RVNSLRTLSLYGNPIEKI 147
            +N+L  L L  N I  +
Sbjct: 214 GLNNLAKLGLSFNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 22/100 (22%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
             L LS N IS V          L             + L+ N +  V      +   ++
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLR-----------ELHLNNNKLVKVPGG-LADHKYIQ 266

Query: 111 ILYLHKNQIEE-----YLSVFVLRRVNSLRTLSLYGNPIE 145
           ++YLH N I       +       +  S   +SL+ NP++
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 39/137 (28%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YGLD 72
           L LSF  I ++D  ++     N   L             R L L++NK+  V        
Sbjct: 221 LGLSFNSISAVDNGSLA----NTPHL-------------RELHLNNNKLVKVPGGLADHK 263

Query: 73  SLVHRTILDPDLIGWIDLSFNNIKNVDKNMF------TNFPNLKILYLHKNQIEEY-LSV 125
            +             + L  NNI  +  N F      T   +   + L  N ++ + +  
Sbjct: 264 YIQV-----------VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 126 FVLRRVNSLRTLSLYGN 142
              R V     + L   
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 28/133 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
            DLS  +I +L K                        D   L L+ N+I+ +       L
Sbjct: 280 CDLSKSKIFALLKSVFSHFT-----------------DLEQLTLAQNEINKIDDNAFWGL 322

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
            H   L+        LS N + ++D  MF N   L++L L  N I   L       + +L
Sbjct: 323 THLLKLN--------LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNL 373

Query: 135 RTLSLYGNPIEKI 147
           + L+L  N ++ +
Sbjct: 374 KELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 54  DTRSLWLSHNKISLV-----YGLDSLVH--------RTILDPDL------IGWIDLSFNN 94
               + LS N I+ +       L  L            ++  +       +  + L +N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 95  IKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNSLRTLSLYGNPIEKIR 148
              ++   F    NL++L L +  ++   LS    + + SL  L L  N I+KI+
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 17  LDLSFQQIQSLDKVA------VQKLKPNVHRLGESPPMLVGRYDT--RSLWLSHNKI-SL 67
           +DLS   I  L++ +      +Q LK      G        R  +    L L +N+   L
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 68  VYG-LDSLVHRTILDPDLIGWIDLSFNNIKN--VDKNMFTNFPNLKILYLHKNQIEEYLS 124
             G  + L +  +L         L+  N+    +  N F    +L++L L  N I++   
Sbjct: 95  ETGAFNGLANLEVLT--------LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 125 VFVLRRVNSLRTLSLYGNPIEKI 147
                 +     L L  N ++ I
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSI 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 28/129 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
           L L+  +I  +D  A   L  ++                  L LS N +  +     ++L
Sbjct: 304 LTLAQNEINKIDDNAFWGL-THL----------------LKLNLSQNFLGSIDSRMFENL 346

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
               +LD        LS+N+I+ +    F   PNLK L L  NQ++  +   +  R+ SL
Sbjct: 347 DKLEVLD--------LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSL 397

Query: 135 RTLSLYGNP 143
           + + L+ NP
Sbjct: 398 QKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVY------- 69
           LDLS    +                              +SL LS++             
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTK--------------IQSLILSNSYNMGSSFGHTNFK 262

Query: 70  GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
             D+   + +    +    DLS + I  + K++F++F +L+ L L +N+I + +      
Sbjct: 263 DPDNFTFKGLEASGVK-TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFW 320

Query: 130 RVNSLRTLSLYGNPIEKIRE 149
            +  L  L+L  N +  I  
Sbjct: 321 GLTHLLKLNLSQNFLGSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDP-DLIGWIDLSFNNIKNVDKNMFTNFP--NLKIL 112
             L L  N I        +   +          +DL+FN +K++ +    NF   +  +L
Sbjct: 132 EMLVLRDNNIK------KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 113 YLHKNQIEE-------YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL 164
            L    +++       +       +  S+ TL L GN  ++    R   +    ++ +L
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 13/139 (9%)

Query: 17  LDLSFQQIQSLDKVAVQKLK-PNVH-------RLGESPPMLVGRYDTRSLWLSHNKISLV 68
           LDLS   +      +   L   ++                 +G  + + L   H+ +  V
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 69  YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
               + +    L      ++D+S+ N K     +F    +L  L +  N  ++     V 
Sbjct: 415 TEFSAFLSLEKLL-----YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 129 RRVNSLRTLSLYGNPIEKI 147
               +L  L L    +E+I
Sbjct: 470 ANTTNLTFLDLSKCQLEQI 488

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 34/155 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVY-----GL 71
           LDLS  +I++++  A   L    H L              +L L+ N I         GL
Sbjct: 61  LDLSRCEIETIEDKAWHGL----HHL-------------SNLILTGNPIQSFSPGSFSGL 103

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            SL +           +      + +++         LK L +  N I           +
Sbjct: 104 TSLEN-----------LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 132 NSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLD 165
            +L  + L  N I+ I       +       ++LD
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 56  RSLWLSHNKISLVY-----GLDSLVH--------RTILDPDLIG------WIDLSFNNIK 96
             L +S+    + +     GL SL          +     ++        ++DLS   ++
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 97  NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            +   +F     L++L +  N +  +L      ++ SL TL    N IE  
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
             L LS  ++  +       L  L             +++S NN+  +D + +    +L 
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQ-----------LLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
            L    N+I E     +     SL   +L  N +
Sbjct: 525 TLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 88  IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           IDLSFN +K +    F+NF  L+ L L + +IE  +       ++ L  L L GNPI+  
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSF 95

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF--PNLKILY 113
           +SL L+ NK S+ +   +L       P L  ++DLS N +       +++    +L+ L 
Sbjct: 331 KSLTLTMNKGSISFKKVAL-------PSLS-YLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
           L  N      + F    +  L+ L    + ++++ E+ A +S  + +L+ LD
Sbjct: 383 LSFNGAIIMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLD 430

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%)

Query: 17  LDLSFQQIQSLDKVAVQKLKP-------NVHRLGESPPMLVGRYDTRSLWLSHNKISLVY 69
           LD+S   I  +   A Q +K        N +        L          L   +     
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 70  GLDSLVHRTI--LDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV 127
            L+      +  L    I    L++ N  + D   F    N+  + L    I+    +  
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLED 302

Query: 128 LRRVNSLRTLSLYGNPIEKI 147
           + +    ++LS+    +++ 
Sbjct: 303 VPKHFKWQSLSIIRCQLKQF 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 29/164 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKLK--------PNVHRLGESPPMLVGRYDTRSLWLSHNKISLV 68
           L LS  + ++L +++              N  RL      L    + R L LSH+ I   
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 69  -------YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE 121
                    L  L             ++LS+N   ++    F   P L++L L   +++ 
Sbjct: 366 DCCNLQLRNLSHLQS-----------LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             +    + ++ L+ L+L  + ++   E    +   +P L  L+
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 56  RSLWLSHNKISLV----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
           + L L+   +S +     GL +L             + LS N  +N+ +   +NFP+L  
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKK-----------LVLSANKFENLCQISASNFPSLTH 329

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
           L +  N     L    L  + +LR L L  + IE        +  +   L +L+
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLN 382

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 54  DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG-----WIDLSFNNIKNVDKNMFTNFPN 108
            T  L  S N +            TI +          ++DL+   I  + ++ F +   
Sbjct: 34  STECLEFSFNVLP-----------TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           L  L L  N +   ++   L    +L+ L      I  I  
Sbjct: 83  LDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 26/146 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
           L+ SF  + ++      +L  N+  L                 ++   +L L+ N +  +
Sbjct: 38  LEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96

Query: 69  -----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL 123
                 G  +L H           +      I ++D     N   L+ LYL  N I   +
Sbjct: 97  AETALSGPKALKH-----------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-I 144

Query: 124 SVFVLRRVNSLRTLSLYGNPIEKIRE 149
            +        L+ L    N I  + +
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSK 170

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L L+  ++ +        +  +L       ++LS + +    + +F   P L+ L L 
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLK-----VLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 116 KNQIEE--YLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N   +        L+ +  L  L L    +  I
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 38/151 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDL+  QI  + +   Q      HRL              +L L+ N +  +      G 
Sbjct: 62  LDLTRCQIYWIHEDTFQSQ----HRL-------------DTLVLTANPLIFMAETALSGP 104

Query: 72  DSLVH-------RTILDPDLIGW------IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
            +L H        + +D   +        + L  N+I ++          LK+L    N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 119 IEEYLSVFVLRRVNSLRTLSLY--GNPIEKI 147
           I   LS   +  +     LSL   GN I  I
Sbjct: 165 IHY-LSKEDMSSLQQATNLSLNLNGNDIAGI 194

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 22/131 (16%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           L+LS   +    +     L           P L      + L L  N        +    
Sbjct: 430 LNLSHSLLDISSEQLFDGL-----------PAL------QHLNLQGNHFP---KGNIQKT 469

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
            ++     +  + LSF ++ ++D++ FT+   +  + L  N++    S+  L  +  +  
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGI-Y 527

Query: 137 LSLYGNPIEKI 147
           L+L  N I  I
Sbjct: 528 LNLASNHISII 538

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 32/134 (23%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L+L        +      L+  + RL               L LS   +S +       L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQ-TLGRL-------------EILVLSFCDLSSIDQHAFTSL 499

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
             + H           +DLS N + +      ++   +  L L  N I   +   +L  +
Sbjct: 500 KMMNH-----------VDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPIL 546

Query: 132 NSLRTLSLYGNPIE 145
           +  RT++L  NP++
Sbjct: 547 SQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 19/142 (13%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
           L      I S+D + +      +  L            P        + L   +N I  +
Sbjct: 110 LFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 69  YG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI-EEYLSV 125
               + SL   T L       ++L+ N+I  ++   F +    + L     Q        
Sbjct: 169 SKEDMSSLQQATNLS------LNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKG 221

Query: 126 FVLRRVNSLRTLSLYGNPIEKI 147
                + SL   +      E I
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDI 243

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 33/138 (23%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDLS  +IQ+++  A Q L      L              +L L+ N I  +      GL
Sbjct: 57  LDLSRCEIQTIEDGAYQSL----SHL-------------STLILTGNPIQSLALGAFSGL 99

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            SL             +     N+ +++     +   LK L +  N I+ +        +
Sbjct: 100 SSLQK-----------LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 132 NSLRTLSLYGNPIEKIRE 149
            +L  L L  N I+ I  
Sbjct: 149 TNLEHLDLSSNKIQSIYC 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 23/128 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LD+S    +         L      L               L ++ N     +  D    
Sbjct: 426 LDISHTHTRVAFNGIFNGL----SSL-------------EVLKMAGNSFQENFLPDIFTE 468

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
              L      ++DLS   ++ +    F +  +L++L +  NQ+ + +   +  R+ SL+ 
Sbjct: 469 LRNLT-----FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQK 522

Query: 137 LSLYGNPI 144
           + L+ NP 
Sbjct: 523 IWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILD--PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
             L   H+ +        +   ++     +LI ++D+S  + +     +F    +L++L 
Sbjct: 399 EHLDFQHSNLK------QMSEFSVFLSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +  N  +E     +   + +L  L L    +E++
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 54  DTRSLWLSHNKISLVY--GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
            T++L LS N +  +      S     +LD        LS   I+ ++   + +  +L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLD--------LSRCEIQTIEDGAYQSLSHLST 80

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L L  N I+  L++     ++SL+ L      +  +
Sbjct: 81  LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIK-NVDKNMFTNFPNL 109
             L +SH    +       GL SL             + ++ N+ + N   ++FT   NL
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEV-----------LKMAGNSFQENFLPDIFTELRNL 472

Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
             L L + Q+E  LS      ++SL+ L++  N ++ +
Sbjct: 473 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 28/132 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           L      + SL+   +  LK     L             + L ++HN I      +   +
Sbjct: 105 LVAVETNLASLENFPIGHLK----TL-------------KELNVAHNLIQSFKLPEYFSN 147

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI----LYLHKNQIEEYLSVFVLRRVN 132
            T L+      +DLS N I+++          + +    L L  N +  ++     + + 
Sbjct: 148 LTNLE-----HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIR 201

Query: 133 SLRTLSLYGNPI 144
            L  L+L  N  
Sbjct: 202 -LHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 88  IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNSLRTLSLYGNPIEK 146
           +  + N   N       + P+L+ L L +N +              SL+ L L  N +  
Sbjct: 330 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 147 I 147
           +
Sbjct: 388 M 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 26/146 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKL-KPNVHRLGES--------PPMLVGRYDTRSLWLSHNKISL 67
               F  I+  D+     L + +V  L  S          +     D + L L++NKI+ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 68  V-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY 122
           +     YGLD+L             ++LS+N +  +  + F   P +  + L KN I   
Sbjct: 305 IADEAFYGLDNLQV-----------LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AI 352

Query: 123 LSVFVLRRVNSLRTLSLYGNPIEKIR 148
           +     + +  L+TL L  N +  I 
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
           LD+S                            L+  +         + I          L
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKS-----QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
              ++        +DLS   + +++  +F    +LK+L L  N+I + ++      +++L
Sbjct: 264 ARSSVR------HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNL 316

Query: 135 RTLSLYGNPIEKI 147
           + L+L  N + ++
Sbjct: 317 QVLNLSYNLLGEL 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 89  DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            LSFN I+ V  + F     L++L L        +     R + +LR L L  + I  +
Sbjct: 30  LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 26/148 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKLK--------PNVHRLGESPPMLVGRYDTRSLWLSHNKISLV 68
           L LSF  I+++   +   L+             L           + R L L  +KI  +
Sbjct: 29  LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88

Query: 69  -----YGLDSLVHRTILDPDLIGWIDLSFNNIKN--VDKNMFTNFPNLKILYLHKNQIEE 121
                 GL  L             + L F  + +  +    F N   L  L L KNQI  
Sbjct: 89  HPDAFQGLFHLFE-----------LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
                   ++NSL+++    N I  + E
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
             L+L  N + L +        T L  D+         + L+ N + ++   +F++   L
Sbjct: 454 EQLFLGENMLQLAW-------ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
           + L L+ N++   LS   L    +L  L +  N +      
Sbjct: 507 RGLSLNSNRL-TVLSHNDLP--ANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNF--PNLKILY 113
             L LS N+I  +Y   S      L       ID S N I  V ++         L    
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLK-----SIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSL 139
           L  N +   +SV   + +N  R + L
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 24/139 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
           L+LS+  +  L       L P V  +                     ++L L  N ++ +
Sbjct: 319 LNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 69  YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
           + + S+             I LS N +  + K          +++L +N++E    ++ L
Sbjct: 378 HFIPSIPD-----------IFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFL 422

Query: 129 RRVNSLRTLSLYGNPIEKI 147
            RV  L+ L L  N     
Sbjct: 423 LRVPHLQILILNQNRFSSC 441

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 28/147 (19%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           +D S  QI  + +  ++ L+                       L+ N +     +D    
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSF---------------FSLAANSLYSRVSVDWGKC 197

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNF------------PNLKILYLHKNQIEE-YL 123
                  ++  +D+S N         F+N              ++       + I++   
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 124 SVFVLRRVNSLRTLSLYGNPIEKIREY 150
           + F     +S+R L L    +  +   
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSR 284

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 62.7 bits (152), Expect = 4e-12
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 87  WIDLSFNNIKNVD--KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
            ++LS N +  +D   ++    PNLKIL L  N+++    +  ++ +  L  L L GN +
Sbjct: 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSL 232

Query: 145 EKI----REYRAVVSTMIPQLVTLDSVFILPS 172
                    Y + +    P+L+ LD   + P 
Sbjct: 233 CDTFRDQSTYISAIRERFPKLLRLDGHELPPP 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 5e-12
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 13/137 (9%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            SL+L +NKI+ +  L  L     L         L  N I ++          L+ LYL 
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLS--------LEDNQISDIVP--LAGLTKLQNLYLS 183

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
           KN I +  +   L  + +L  L L+                +   +   D   + P    
Sbjct: 184 KNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 176 ETNALNAEIRSYLLPKY 192
           +          + LP++
Sbjct: 241 DDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 5e-10
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L+L  NKI  +  L  L     L         L  N I +++     + P L+ LYL 
Sbjct: 90  GWLFLDENKIKDLSSLKDLKKLKSLS--------LEHNGISDING--LVHLPQLESLYLG 139

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N+I     + VL R+  L TLSL  N I  I
Sbjct: 140 NNKIT---DITVLSRLTKLDTLSLEDNQISDI 168

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             +  +++ I  V G+  L + T L         L+ N + ++     TN  NL  L+L 
Sbjct: 46  DQIIANNSDIKSVQGIQYLPNVTKLF--------LNGNKLTDIK--PLTNLKNLGWLFLD 95

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +N+I+    +  L+ +  L++LSL  N I  I
Sbjct: 96  ENKIK---DLSSLKDLKKLKSLSLEHNGISDI 124

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
                    I  ++  D+       +        L   ++ +          ++  +  +
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDN--------LKKKSVTDAVT--QNELNSIDQIIAN 51

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            + I+   SV  ++ + ++  L L GN +  I
Sbjct: 52  NSDIK---SVQGIQYLPNVTKLFLNGNKLTDI 80

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 34/138 (24%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           +      ++ L    +   +    ++               L L+  +I  +        
Sbjct: 50  VTFKNSTMRKLPAALLDSFR----QV-------------ELLNLNDLQIEEIDTYAFAYA 92

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            ++             + + FN I+ +  ++F N P L +L L +N +   L   +    
Sbjct: 93  HTIQK-----------LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNT 140

Query: 132 NSLRTLSLYGNPIEKIRE 149
             L TLS+  N +E+I +
Sbjct: 141 PKLTTLSMSNNNLERIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 30/131 (22%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LD S   I  +      +L                      L L HN ++    L +   
Sbjct: 210 LDASHNSINVVRGPVNVEL--------------------TILKLQHNNLTDTAWLLNY-- 247

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
                P L+  +DLS+N ++ +  + F     L+ LY+  N++         + + +L+ 
Sbjct: 248 -----PGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKV 299

Query: 137 LSLYGNPIEKI 147
           L L  N +  +
Sbjct: 300 LDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 17/97 (17%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
           + +   ++ +  +          +             ++L+   I+ +D   F     ++
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVEL-----------LNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            LY+  N I   L   V + V  L  L L  N +  +
Sbjct: 97  KLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSL 132

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 37/136 (27%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L + F  I+ L     Q +      L               L L  N +S +     +  
Sbjct: 98  LYMGFNAIRYLPPHVFQNVP----LL-------------TVLVLERNDLSSLPRGIFHNT 140

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
             L             + +S NN++ ++ + F    +L+ L L  N++   + + ++   
Sbjct: 141 PKLTT-----------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIP-- 186

Query: 132 NSLRTLSLYGNPIEKI 147
            SL   ++  N +  +
Sbjct: 187 -SLFHANVSYNLLSTL 201

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 39/134 (29%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YGLD 72
           +DLS+ +++ +      K++    RL               L++S+N++  +      + 
Sbjct: 253 VDLSYNELEKIMYHPFVKMQ----RL-------------ERLYISNNRLVALNLYGQPIP 295

Query: 73  SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRV 131
           +L             +DLS N++ +V++N    F  L+ LYL  N I    LS       
Sbjct: 296 TLK-----------VLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTH----- 338

Query: 132 NSLRTLSLYGNPIE 145
           ++L+ L+L  N  +
Sbjct: 339 HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
               +S+N +S +    ++             +D S N+I  V   +      L IL L 
Sbjct: 189 FHANVSYNLLSTLAIPIAVEE-----------LDASHNSINVVRGPVNV---ELTILKLQ 234

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            N + +      L     L  + L  N +EKI  
Sbjct: 235 HNNLTD---TAWLLNYPGLVEVDLSYNELEKIMY 265

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 54  DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
            T++L LS N +  L      S     +LD        LS   I+ ++   + +  +L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLD--------LSRCEIQTIEDGAYQSLSHLST 80

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L L  N I+  L++     ++SL+ L      +  +
Sbjct: 81  LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 27/133 (20%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           LDLS  +IQ+++  A Q L      L              +L L+ N I SL  G    L
Sbjct: 57  LDLSRCEIQTIEDGAYQSLS----HL-------------STLILTGNPIQSLALGAFSGL 99

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                L             N+ +++     +   LK L +  N I+ +        + +L
Sbjct: 100 SSLQKLV--------AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 135 RTLSLYGNPIEKI 147
             L L  N I+ I
Sbjct: 152 EHLDLSSNKIQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLG---------ESPPMLVGRYDTRSLWLSHNKISL 67
           L      + SL+   +  L   +  L          + P       +   L LS NKI  
Sbjct: 105 LVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 68  VYG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV 125
           +Y   L  L    +L+  L    DLS N +  +    F     LK L L  NQ++  +  
Sbjct: 164 IYCTDLRVLHQMPLLNLSL----DLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS-VPD 217

Query: 126 FVLRRVNSLRTLSLYGNP 143
            +  R+ SL+ + L+ NP
Sbjct: 218 GIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 28/133 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           LDLSF  ++ L   +               P L      + L LS  +I ++  G   SL
Sbjct: 33  LDLSFNPLRHLGSYSFFSF-----------PEL------QVLDLSRCEIQTIEDGAYQSL 75

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
            H + L         L+ N I+++    F+   +L+ L   +  +   L  F +  + +L
Sbjct: 76  SHLSTL--------ILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTL 126

Query: 135 RTLSLYGNPIEKI 147
           + L++  N I+  
Sbjct: 127 KELNVAHNLIQSF 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 19/118 (16%)

Query: 54  DTRSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFP 107
            T++L L    +  +       L ++             I +S +  ++ ++ + F N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISR-----------IYVSIDVTLQQLESHSFYNLS 80

Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            +  + +   +   Y+    L+ +  L+ L ++   ++   +   V ST       L+
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST--DIFFILE 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 23/114 (20%)

Query: 56  RSLWLSHNKI------SLVYGLDSLVHRTILD---------------PDLIGWIDLSFNN 94
           + L + +  +      + VY  D      I D                +    + L  N 
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 95  IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS-LRTLSLYGNPIEKI 147
             +V    F     L  +YL+KN+    +       V S    L +    +  +
Sbjct: 168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 55  TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPN-LKIL 112
           T +L L +N         + V     +   +  + L+ N  +  +DK+ F    +   +L
Sbjct: 158 TLTLKLYNNGF-------TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLY 140
            + +  +   L    L  +  L   + +
Sbjct: 211 DVSQTSVTA-LPSKGLEHLKELIARNTW 237

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 20/102 (19%)

Query: 54  DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
           DT  L L +N IS +      GL  L             + L  N I  + +  F+    
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLY-----------ALVLVNNKISKIHEKAFSPLRK 103

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
           L+ LY+ KN + E +   +     SL  L ++ N I K+ + 
Sbjct: 104 LQKLYISKNHLVE-IPPNLPS---SLVELRIHDNRIRKVPKG 141

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 38/138 (27%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L +S  ++  + K   + L                      L L HNKI  +        
Sbjct: 177 LRISEAKLTGIPKDLPETL--------------------NELHLDHNKIQAIELEDLLRY 216

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
             L             + L  N I+ ++    +  P L+ L+L  N++    +      +
Sbjct: 217 SKLYR-----------LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL--PDL 263

Query: 132 NSLRTLSLYGNPIEKIRE 149
             L+ + L+ N I K+  
Sbjct: 264 KLLQVVYLHTNNITKVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDL---IGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
             L +S  K+            T +  DL   +  + L  N I+ ++      +  L  L
Sbjct: 175 NYLRISEAKL------------TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            L  NQI   +    L  + +LR L L  N + ++
Sbjct: 223 GLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 22/100 (22%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
             L L HN+I ++       L +L             + L  N +  V      +   L+
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRE-----------LHLDNNKLSRVPAG-LPDLKLLQ 267

Query: 111 ILYLHKNQIEE-----YLSVFVLRRVNSLRTLSLYGNPIE 145
           ++YLH N I +     +  V    +      +SL+ NP+ 
Sbjct: 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 53/158 (33%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           L L   +I  + + A   L     +L             + L++S N +           
Sbjct: 83  LVLVNNKISKIHEKAFSPL----RKL-------------QKLYISKNHL----------- 114

Query: 77  RTILDPDL---IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE------------ 121
              + P+L   +  + +  N I+ V K +F+   N+  + +  N +E             
Sbjct: 115 -VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 122 ----YLSVFVLRRVN-----SLRTLSLYGNPIEKIREY 150
                +S   L  +      +L  L L  N I+ I   
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVH-------RLGESPPMLVGRYDTRSLWLSHNKISLVY 69
           L L   QI+ ++  ++  L P +        +L   P  L      + ++L  N I+ V 
Sbjct: 222 LGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 70  GLDSLVHRTILDPDLIGWIDLSFNNIK--NVDKNMFTNFPNLKILYLHKNQ 118
             D       +       I L  N +    V    F    +   +     +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 34/136 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LD+ F  I  L+    QKL      L             + L L HN++S +        
Sbjct: 54  LDVGFNTISKLEPELCQKL----PML-------------KVLNLQHNELSQLSDKTFAFC 96

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +L             + L  N+I+ +  N F    NL  L L  N +     +    ++
Sbjct: 97  TNLTE-----------LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQL 144

Query: 132 NSLRTLSLYGNPIEKI 147
            +L+ L L  N I+ +
Sbjct: 145 ENLQELLLSNNKIQAL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKISLV 68
             +S   +  +D  + Q L   +  L        G    M  G  + + L LS++  SL 
Sbjct: 310 QSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 69  YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL 128
             L +    ++    L   ++L+ N I  ++ + F+   +L++L L  N+I + L+    
Sbjct: 369 -TLTNETFVSLAHSPLH-ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 129 RRVNSLRTLSLYGNPIEKI 147
           R + ++  + L  N   ++
Sbjct: 427 RGLENIFEIYLSYNKYLQL 445

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
           LDLS   I +++   ++ L             L        L L HN ++ +  +     
Sbjct: 485 LDLSNNNIANINDDMLEGL-----------EKL------EILDLQHNNLARLWKHANPGG 527

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
               +     +  ++L  N    +   +F +   LKI+ L  N +   L   V     SL
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSL 586

Query: 135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
           ++L+L  N I  + +   V       L  LD
Sbjct: 587 KSLNLQKNLITSVEK--KVFGPAFRNLTELD 615

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 27/135 (20%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LDL    +  L K A           G     L G      L L  N             
Sbjct: 509 LDLQHNNLARLWKHANP---------GGPIYFLKGLSHLHILNLESNGF----------- 548

Query: 77  RTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
              +  ++         IDL  NN+  +  ++F N  +LK L L KN I           
Sbjct: 549 -DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 131 VNSLRTLSLYGNPIE 145
             +L  L +  NP +
Sbjct: 608 FRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 54  DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
           +   L L+HN++  +          L             +D+ FN I  ++  +    P 
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTS-----------LDVGFNTISKLEPELCQKLPM 74

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           LK+L L  N++ + LS        +L  L L  N I+KI+ 
Sbjct: 75  LKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDTRSLWLSHNKIS-L 67
           L L    IQ +      K   N+  L               V   + + L LS+NKI  L
Sbjct: 102 LHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 68  VYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL--SV 125
                 +   + L       ++LS N IK      F     L  L+L+  Q+   L   +
Sbjct: 161 KSEELDIFANSSLK-----KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 126 FVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            +     S+R LSL  + +         +      L  LD
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLD 254

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 23/132 (17%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           L+L+  +I  ++  A   L      L               L L  N+I        L  
Sbjct: 386 LNLTKNKISKIESDAFSWL----GHL-------------EVLDLGLNEIG-----QELTG 423

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE-YLSVFVLRRVNSLR 135
           +     + I  I LS+N    + +N F   P+L+ L L +  ++    S    + + +L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 136 TLSLYGNPIEKI 147
            L L  N I  I
Sbjct: 484 ILDLSNNNIANI 495

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L L    +  V    S         +L   +DLS NNI N++ +M      L+IL L 
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPL---RNLT-ILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 116 KNQIEE-------YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            N +            ++ L+ ++ L  L+L  N  ++I      V   + +L  +D
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE---VFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRL--------GESPPMLVGRYDT---RSLWLSHNKI 65
           L+LS  QI+         +   +  L              L         R+L LS++++
Sbjct: 176 LELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 66  SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV 125
           S      +     +   +L   +DLS+NN+  V  + F   P L+  +L  N I+  L  
Sbjct: 235 S---TTSNTTFLGLKWTNLT-MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFS 289

Query: 126 FVLRRVNSLRTLSLYGN 142
             L  + ++R L+L  +
Sbjct: 290 HSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 41/145 (28%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           L LS  Q+ +        LK     L               L LS+N +           
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWT--NL-------------TMLDLSYNNL----------- 260

Query: 77  RTILDPDLIGW------IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
             ++  D   W        L +NNI+++  +      N++ L L ++  ++ +S+  L +
Sbjct: 261 -NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 131 VN--------SLRTLSLYGNPIEKI 147
           ++         L  L++  N I  I
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGI 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 17/99 (17%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
             L L+  +I  +         ++             + + FN I+ +  ++F N P L 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQK-----------LYMGFNAIRYLPPHVFQNVPLLT 126

Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           +L L +N +   L   +      L TLS+  N +E+I +
Sbjct: 127 VLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 30/131 (22%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LD S   I  +      +L                      L L HN ++    L +   
Sbjct: 216 LDASHNSINVVRGPVNVEL--------------------TILKLQHNNLTDTAWLLNYPG 255

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
                   +  +DLS+N ++ +  + F     L+ LY+  N++         + + +L+ 
Sbjct: 256 --------LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QPIPTLKV 305

Query: 137 LSLYGNPIEKI 147
           L L  N +  +
Sbjct: 306 LDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 9e-10
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 56  RSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
           + +   ++ +  +    LDS     +L        +L+   I+ +D   F     ++ LY
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELL--------NLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           +  N I   L   V + V  L  L L  N +  +  
Sbjct: 106 MGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPR 140

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 37/136 (27%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           L + F  I+ L     Q +      L               L L  N +S +     +  
Sbjct: 104 LYMGFNAIRYLPPHVFQNVP----LL-------------TVLVLERNDLSSLPRGIFHNT 146

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
             L             + +S NN++ ++ + F    +L+ L L  N++   + + ++   
Sbjct: 147 PKLTT-----------LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIP-- 192

Query: 132 NSLRTLSLYGNPIEKI 147
            SL   ++  N +  +
Sbjct: 193 -SLFHANVSYNLLSTL 207

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 37/133 (27%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV----YGLD 72
           +DLS+ +++ +      K++    RL               L++S+N++  +      + 
Sbjct: 259 VDLSYNELEKIMYHPFVKMQ----RL-------------ERLYISNNRLVALNLYGQPIP 301

Query: 73  SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN 132
           +L             +DLS N++ +V++N    F  L+ LYL  N I        L   +
Sbjct: 302 TLK-----------VLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVT----LKLSTHH 345

Query: 133 SLRTLSLYGNPIE 145
           +L+ L+L  N  +
Sbjct: 346 TLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 33/143 (23%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
           L +S   ++ ++    Q        L             ++L LS N+++ V    + SL
Sbjct: 152 LSMSNNNLERIEDDTFQATT----SL-------------QNLQLSSNRLTHVDLSLIPSL 194

Query: 75  VH--------RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
            H         T+  P  +  +D S N+I  V   +      L IL L  N + +  +  
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-TAWL 250

Query: 127 VLRRVNSLRTLSLYGNPIEKIRE 149
                  L  + L  N +EKI  
Sbjct: 251 --LNYPGLVEVDLSYNELEKIMY 271

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 54  DTRSLWLSHNKISLVYG--LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
               + L  N I ++                     IDLS N I  +  + F    +L  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLR--------RIDLSNNQISELAPDAFQGLRSLNS 84

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           L L+ N+I E L   +   + SL+ L L  N I  +R 
Sbjct: 85  LVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 28/129 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           +DLS  QI  L   A Q L+     L              SL L  NKI  L   L + L
Sbjct: 61  IDLSNNQISELAPDAFQGLR----SL-------------NSLVLYGNKITELPKSLFEGL 103

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
               +L         L+ N I  +  + F +  NL +L L+ N+++  ++      + ++
Sbjct: 104 FSLQLLL--------LNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAI 154

Query: 135 RTLSLYGNP 143
           +T+ L  NP
Sbjct: 155 QTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 28/133 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           + L    I+ +   A    K    +L             R + LS+N+I  L       L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYK----KL-------------RRIDLSNNQISELAPDAFQGL 79

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                L         L  N I  + K++F    +L++L L+ N+I   L V   + +++L
Sbjct: 80  RSLNSLV--------LYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNL 130

Query: 135 RTLSLYGNPIEKI 147
             LSLY N ++ I
Sbjct: 131 NLLSLYDNKLQTI 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 10/90 (11%)

Query: 54  DTRSLWLSHNKISLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
           D   L+L  N+ +LV   L +  H T         IDLS N I  +    F+N   L  L
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLT--------LIDLSNNRISTLSNQSFSNMTQLLTL 83

Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
            L  N++   +       + SLR LSL+GN
Sbjct: 84  ILSYNRLRC-IPPRTFDGLKSLRLLSLHGN 112

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 13/114 (11%)

Query: 54  DTRSLWLSHNKISLVY--GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
             +SL LS NKI+ +    L +  +  +L         L  + I  ++ + F +  +L+ 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVL--------ILKSSRINTIEGDAFYSLGSLEH 78

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
           L L  N +   LS      ++SL+ L+L GNP + +    ++   +   L TL 
Sbjct: 79  LDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNL-TNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 35/154 (22%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-----YGL 71
           LDLSF +I  +    ++        L             + L L  ++I+ +     Y L
Sbjct: 31  LDLSFNKITYIGHGDLRAC----ANL-------------QVLILKSSRINTIEGDAFYSL 73

Query: 72  DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            SL H           +DLS N++ ++  + F    +LK L L  N  +      +   +
Sbjct: 74  GSLEH-----------LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            +L+TL +         E R +    +  L  L+
Sbjct: 123 TNLQTLRIGNVE--TFSEIRRIDFAGLTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 32/152 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVH---------RLGESPPMLVGRYDTRSLWLSHNKISL 67
           L LS   ++S+ K   + L    +              P         R L LS   I +
Sbjct: 366 LVLSQNHLRSMQKTG-EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424

Query: 68  V--YGLDSLVHRTILD-------------PDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
           V      +L    +LD             P L   + +S N +K +       FP L ++
Sbjct: 425 VKTCIPQTL---EVLDVSNNNLDSFSLFLPRLQ-ELYISRNKLKTLPDASL--FPVLLVM 478

Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
            + +NQ+ + +   +  R+ SL+ + L+ NP 
Sbjct: 479 KISRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 24/133 (18%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           + +   ++  +     Q LK     L               L LS N +   Y  +S   
Sbjct: 315 ITVENSKVFLVPCSFSQHLK----SL-------------EFLDLSENLMVEEYLKNSACK 357

Query: 77  RTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                P L   + LS N+++++ K   +     NL  L + +N           +    +
Sbjct: 358 GAW--PSLQ-TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC--QWPEKM 412

Query: 135 RTLSLYGNPIEKI 147
           R L+L    I  +
Sbjct: 413 RFLNLSSTGIRVV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 56  RSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
           R L +    +          L+ +             I +  + +  V  +   +  +L+
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKR-----------ITVENSKVFLVPCSFSQHLKSLE 337

Query: 111 ILYLHKNQIEE--YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            L L +N + E    +        SL+TL L  N +  +++   ++ T+   L +LD
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLD 393

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 38/154 (24%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS------LVYG 70
           LDLS   + SL       L      L             + L L  N         L   
Sbjct: 79  LDLSDNHLSSLSSSWFGPLS----SL-------------KYLNLMGNPYQTLGVTSLFPN 121

Query: 71  LDSLVH---------RTILDPDLIG-----WIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
           L +L             I   D  G      +++   +++N       +  ++  L LH 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY 150
           ++   +L       ++S+R L L    + + +  
Sbjct: 182 SES-AFLLEIFADILSSVRYLELRDTNLARFQFS 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 58  LWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
              S N++  L+  +  L      D  L G  D + +    V +        ++ L++ +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
             +   LS  V   +  ++ +++  + +  +       S  +  L  LD
Sbjct: 296 FYLFYDLST-VYSLLEKVKRITVENSKVFLV---PCSFSQHLKSLEFLD 340

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 89  DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           D    +  ++   +      +K L L  N+I   +    LR   +L+ L L  + I  I
Sbjct: 11  DGRSRSFTSIPSGLT---AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTI 65

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 17  LDLSFQQIQSLDK----VAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL 71
           L+L   ++  L        +  L  + ++L   P +         L +S N++ SL  G 
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 72  -DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
              L     L         L  N +K +   + T  P L+ L L  N + E L   +L  
Sbjct: 120 LRGLGELQELY--------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNG 170

Query: 131 VNSLRTLSLYGNPIEKI 147
           + +L TL L  N +  I
Sbjct: 171 LENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 6e-10
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKI-SLVY 69
           L LS   + +     +      + +L           +        +L LSHN++ SL  
Sbjct: 36  LHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94

Query: 70  GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR 129
              +L   T+LD        +SFN + ++          L+ LYL  N+++  L   +L 
Sbjct: 95  LGQTLPALTVLD--------VSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 130 RVNSLRTLSLYGNPIEKI 147
               L  LSL  N + ++
Sbjct: 146 PTPKLEKLSLANNNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 18/110 (16%)

Query: 54  DTRSLWLSHNKISLVY--GLDSLVHRTILDPD--------------LIGWIDLSFNNIKN 97
           DT  L LS N +       L      T L+ D              ++G +DLS N +++
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 98  VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +   +    P L +L +  N++   L +  LR +  L+ L L GN ++ +
Sbjct: 92  LP-LLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 44/149 (29%)

Query: 7   TSIDPEF-KIP----LDLSFQQIQSLDKVAVQKLKPNV-HRLGESPPMLVGRYDTRSLWL 60
            S+      +P    LD+SF ++ SL               LGE    L      + L+L
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLP--------LGALRGLGE----L------QELYL 131

Query: 61  SHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ 118
             N++ +L  GL         L         L+ NN+  +   +     NL  L L +N 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLS--------LANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 119 IEEYLSV----FVLRRVNSLRTLSLYGNP 143
           +    ++    F     + L    L+GNP
Sbjct: 184 LY---TIPKGFFGS---HLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 89  DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
            LS N +          +  L  L L + ++ + L V     +  L TL L  N ++ + 
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQSL- 92

Query: 149 EYRAVVSTMIPQLVTLD 165
               ++   +P L  LD
Sbjct: 93  ---PLLGQTLPALTVLD 106

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 18/110 (16%)

Query: 56  RSLWLSHNKISLVY----GLDSLVH--------RTILDPDLIG------WIDLSFNNIKN 97
           + L LS N +  +     GL+ L H        + + +  +        ++D+S  + + 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 98  VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
               +F    +L++L +  N  +E     +   + +L  L L    +E++
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 22/129 (17%)

Query: 56  RSLWLSHNKIS-----LVYGLDSLVH--------RTILDPDLIG------WIDLSFNNIK 96
             L +SH         +  GL SL          +    PD+        ++DLS   ++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 97  NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
            +    F +  +L++L +  N     L  F  + +NSL+ L    N I   ++    +  
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQH 540

Query: 157 MIPQLVTLD 165
               L  L+
Sbjct: 541 FPSSLAFLN 549

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 35/137 (25%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LDLS  +IQ+++  A Q L      L              +L L+ N I           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLS----HL-------------STLILTGNPI----------- 88

Query: 77  RTILDPDLIGW------IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR 130
              L             +     N+ +++     +   LK L +  N I+ +        
Sbjct: 89  -QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 131 VNSLRTLSLYGNPIEKI 147
           + +L  L L  N I+ I
Sbjct: 148 LTNLEHLDLSSNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 17/99 (17%)

Query: 54  DTRSLWLSHNKISLVY-----GLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPN 108
            T++L LS N +  +          L             +DLS   I+ ++   + +  +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQV-----------LDLSRCEIQTIEDGAYQSLSH 77

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L  L L  N I+  L++     ++SL+ L      +  +
Sbjct: 78  LSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 56  RSLWLSHNKIS-----LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
             L LS  ++          L SL             +++S NN  ++D   +    +L+
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQV-----------LNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
           +L    N I       +    +SL  L+L  N  
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 56  RSLWLSHNKISLV------YGLDSLV-----HRTILDPDLIGWIDLSFNNIKNVDKNMFT 104
            S  L    I  V      +G   L              L     L+F + K  +     
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 105 NFPNLKILYLHKNQIE-EYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           + P+L+ L L +N +  +           SL+ L L  N +  +
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 56  RSLWLSHNKISLV---YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKIL 112
             L L +N  SL      +  L    +    L+     +  N++  DK+      NL I 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHR--LVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 113 YLHKNQIEEYLS--VFVLRRVNSLRTLSLYGNPIEKI 147
                 ++ YL   + +   + ++ + SL    IE++
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 28/106 (26%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV--YGLDSL 74
           LDLS  Q++ L   A   L      L             + L +SHN    +  +    L
Sbjct: 475 LDLSQCQLEQLSPTAFNSL----SSL-------------QVLNMSHNNFFSLDTFPYKCL 517

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-NLKILYLHKNQI 119
               +LD         S N+I    K    +FP +L  L L +N  
Sbjct: 518 NSLQVLD--------YSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVH--------RTILDPDLIG--WIDLSFNNIKNVDKNMFTN 105
           R+L L++N +  +    S+            +      G   I L+ N I  +       
Sbjct: 83  RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
              ++ L L  N+I+      +    ++L  L+L  N I  ++        +  +L TLD
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLD 197

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 21/98 (21%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
           +   ++ + +                  L         +DLS N +  +       F  L
Sbjct: 13  KIEKVTDSSL------------KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           ++L L  N + E L +  L    +LRTL L  N ++++
Sbjct: 61  ELLNLSSNVLYETLDLESLS---TLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 27/131 (20%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LDL   +I +++   +      +                  L L +N I  V G      
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTL----------------EHLNLQYNFIYDVKGQVVFAK 192

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
              LD        LS N +  +    F +   +  + L  N++   +    LR   +L  
Sbjct: 193 LKTLD--------LSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEK-ALRFSQNLEH 241

Query: 137 LSLYGNPIEKI 147
             L GN     
Sbjct: 242 FDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 35/133 (26%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYG--LDSL 74
             ++   ++       Q        +             + L LS N +S +    L   
Sbjct: 15  EKVTDSSLKQALASLRQSAW----NV-------------KELDLSGNPLSQISAADLAPF 57

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
               +L        +LS N +         +   L+ L L+ N ++E      L    S+
Sbjct: 58  TKLELL--------NLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSI 101

Query: 135 RTLSLYGNPIEKI 147
            TL    N I ++
Sbjct: 102 ETLHAANNNISRV 114

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVH--------RTILDPDLIG--WIDLSFNNIKNVDKNMFTN 105
           R+L L++N +  +    S+            +      G   I L+ N I  +       
Sbjct: 83  RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 106 FPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
              ++ L L  N+I+      +    ++L  L+L  N I  ++        +  +L TLD
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLD 197

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 21/99 (21%)

Query: 55  TRSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPN 108
            +   ++ + +                  L         +DLS N +  +       F  
Sbjct: 12  YKIEKVTDSSL------------KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 109 LKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L++L L  N + E L +  L    +LRTL L  N ++++
Sbjct: 60  LELLNLSSNVLYETLDLESLS---TLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 87  WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
              ++ +++K    ++  +  N+K L L  N + + +S   L     L  L+L  N + +
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYE 72

Query: 147 IRE 149
             +
Sbjct: 73  TLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 25/182 (13%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYDTRSLWLSHNKISLV-- 68
           LDL   +I +++   +      +  L             V     ++L LS NK++ +  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP 208

Query: 69  --YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
                  +            WI L  N +  ++K       NL+   L  N         
Sbjct: 209 EFQSAAGVT-----------WISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNALNAEIRS 186
              +   ++T++     ++K+   +      +P L    +           + L A  R 
Sbjct: 257 FFSKNQRVQTVAK--QTVKKL-TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313

Query: 187 YL 188
             
Sbjct: 314 EH 315

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L +  N+IS +  L++L     L         L+ N + N D  +     NL  L+L 
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLF--------LNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
           +N I     +  L  ++ + +       I+K
Sbjct: 320 QNHIT---DIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L +  N+IS +  +  L    +L+        +  N I ++   +  N   L  L+L+
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLN--------VGSNQISDIS--VLNNLSQLNSLFLN 295

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            NQ+     + V+  + +L TL L  N I  IR 
Sbjct: 296 NNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 9e-08
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
                  N+I+ +  + ++     L         +  N I ++      N   L  L + 
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLK--------IGNNKITDLSP--LANLSQLTWLEIG 251

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQI     +  ++ +  L+ L++  N I  I
Sbjct: 252 TNQIS---DINAVKDLTKLKMLNVGSNQISDI 280

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L ++  K++ + G++ L +   L+        L+ N I ++     +N   L  LY+ 
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLEYLN--------LNGNQITDISP--LSNLVKLTNLYIG 96

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N+I +  ++  L    +LR L L  + I  I
Sbjct: 97  TNKITDISALQNL---TNLRELYLNEDNISDI 125

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 20/107 (18%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILD---------PDLIG------WIDLSFNNIKNVDK 100
           R L+L+ + IS +  L +L     L+            +       ++ ++ + +K+V  
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 101 NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
               N  +L  L L+ NQIE    +  L  + SL   + Y N I  I
Sbjct: 173 --IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 57  SLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
           +L      I+ ++    L               L   ++ +V         ++  L +  
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAV--------LQKASVTDVVT--QEELESITKLVVAG 53

Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            ++    S+  +  + +L  L+L GN I  I
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDI 81

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 54  DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
           DT+ L L  NK+ SL       L    +L         L+ N ++ +   +F    NL+ 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLY--------LNDNKLQTLPAGIFKELKNLET 89

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L++  N+++  L + V  ++ +L  L L  N ++ +
Sbjct: 90  LWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSL 124

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 28/133 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           L ++  ++Q+L      +L                  +   L L  N++ SL   + DSL
Sbjct: 90  LWVTDNKLQALPIGVFDQLV-----------------NLAELRLDRNQLKSLPPRVFDSL 132

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
              T L         L +N ++++ K +F    +LK L L+ NQ++  +      ++  L
Sbjct: 133 TKLTYLS--------LGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTEL 183

Query: 135 RTLSLYGNPIEKI 147
           +TL L  N ++++
Sbjct: 184 KTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 56  RSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
             L L +N++ SL  G+ D L     L         L  N +K V +  F     LK L 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELR--------LYNNQLKRVPEGAFDKLTELKTLK 187

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
           L  NQ++  +       +  L+ L L  NP
Sbjct: 188 LDNNQLKR-VPEGAFDSLEKLKMLQLQENP 216

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 7e-10
 Identities = 16/150 (10%), Positives = 46/150 (30%), Gaps = 25/150 (16%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV---YGLDS 73
           L+++  +  S  ++                         +  ++ +N +        L  
Sbjct: 520 LNIACNRGISAAQLKAD--------WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 74  LVHRTILD---------PDLIG-----WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
           +V   +LD                    + L +N I+ + ++       ++ L    N++
Sbjct: 572 MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           +   ++F  + V  + ++    N I     
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            S+  S+NKI    G +               + LS+N I+     +F     +  + L 
Sbjct: 647 GSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 116 KNQIEE------YLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            N +               +    L T+ L  N +  + +     +T +P L  +D
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD--DFRATTLPYLSNMD 759

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 56  RSLWLSHNKIS-LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
            ++ +S+N  S       +          +    D   N I        T  P+L  L +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFG--IRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
             N I + +   +      L  L +  NP   I
Sbjct: 814 GSNDIRK-VDEKLT---PQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 25/105 (23%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNM------- 102
            ++ LS+N+I                 +L         I LS N + ++ +N        
Sbjct: 676 STVTLSYNEI------------QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           + N   L  + L  N++      F    +  L  + +  N     
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 25/108 (23%)

Query: 56  RSLWLSHNKI-----SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK---------N 101
             + L +          +Y L  L             ++++ N   +  +         +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQS-----------LNIACNRGISAAQLKADWTRLAD 542

Query: 102 MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
                P ++I Y+  N +EE+ +   L+++  L  L    N +  +  
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 13/137 (9%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L+L +N++     L  L +  IL         +  N +K++   M      L++L LH
Sbjct: 109 SRLFLDNNELRDTDSLIHLKNLEILS--------IRNNKLKSIV--MLGFLSKLEVLDLH 158

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
            N+I    +   L R+  +  + L G               +   +   D  +I P    
Sbjct: 159 GNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

Query: 176 ETNALNAEIRSYLLPKY 192
              +       + LP Y
Sbjct: 216 NGGSYVDGCVLWELPVY 232

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L LSHN+IS +  L  L     L         ++ N +KN++         L  L+L 
Sbjct: 66  KELHLSHNQISDLSPLKDLTKLEEL--------SVNRNRLKNLN---GIPSACLSRLFLD 114

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N++        L  + +L  LS+  N ++ I
Sbjct: 115 NNELR---DTDSLIHLKNLEILSIRNNKLKSI 143

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
               L    ++ +     L              +   +NI+++       F NLK L+L 
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNF--------NGDNSNIQSLA--GMQFFTNLKELHLS 71

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQI +   +  L+ +  L  LS+  N ++ +
Sbjct: 72  HNQISD---LSPLKDLTKLEELSVNRNRLKNL 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           ++    ++ I  + G+    +   L         LS N I ++      +   L+ L ++
Sbjct: 44  QNFNGDNSNIQSLAGMQFFTNLKEL--------HLSHNQISDLS--PLKDLTKLEELSVN 93

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           +N+++    +        L  L L  N +   
Sbjct: 94  RNRLKNLNGIPSA----CLSRLFLDNNELRDT 121

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 13/148 (8%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L + + ++S +  L +L   T L            N I ++      + PNL  ++L 
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLK--------ADDNKISDIS--PLASLPNLIEVHLK 203

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ 175
            NQI     V  L   ++L  ++L    I     +      +   +       I P+   
Sbjct: 204 NNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

Query: 176 ETNALNAEIRSYLLPKYEKLEAATFKRT 203
           +     +   ++ L  +    + TF ++
Sbjct: 261 DNGTYASPNLTWNLTSFINNVSYTFNQS 288

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            +L      ++ + G+  L +   L        +L  N I ++      N   +  L L 
Sbjct: 44  TTLSAFGTGVTTIEGVQYLNNLIGL--------ELKDNQITDLAP--LKNLTKITELELS 93

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N ++   +V  +  + S++TL L    I  +
Sbjct: 94  GNPLK---NVSAIAGLQSIKTLDLTSTQITDV 122

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L LS N +  V  +  L     LD        L+   I +V         NL++LYL 
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLD--------LTSTQITDVTP--LAGLSNLQVLYLD 137

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQI    ++  L  + +L+ LS+    +  +
Sbjct: 138 LNQIT---NISPLAGLTNLQYLSIGNAQVSDL 166

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 57  SLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
            +    + ++       L   T L              +  ++        NL  L L  
Sbjct: 23  KIAAGKSNVTDTVTQADLDGITTL--------SAFGTGVTTIE--GVQYLNNLIGLELKD 72

Query: 117 NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           NQI     +  L+ +  +  L L GNP++ +
Sbjct: 73  NQIT---DLAPLKNLTKITELELSGNPLKNV 100

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 54  DTRSLWLSHNKISLV-----YGLDSLVHRTILDPDLIGWIDLSFNNI-KNVDKNMFTNFP 107
           +   L     K+ ++      G   L             I++S N++ + ++ ++F+N P
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLE-----------KIEISQNDVLEVIEADVFSNLP 79

Query: 108 NLKILYL-HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
            L  + +   N +  Y++    + + +L+ L +    I+ + +   + S    Q V LD
Sbjct: 80  KLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLD 134

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 24/127 (18%)

Query: 17  LDLSF-QQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLV 75
           LD+     I ++++ +   L                   +  LWL+ N I        + 
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFE----------------SVILWLNKNGIQ------EIH 170

Query: 76  HRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR 135
           +       L        NN++ +  ++F       IL + + +I   L  + L  +  LR
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLR 229

Query: 136 TLSLYGN 142
             S Y  
Sbjct: 230 ARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 21/112 (18%)

Query: 56  RSLWLSHNKISLV-----YGLDSLVHRTILD---------------PDLIGWIDLSFNNI 95
           + L +S+  I  +           V   I D                     + L+ N I
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 96  KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           + +  + F      ++     N +EE L   V    +    L +    I  +
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSL 217

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 40/140 (28%)

Query: 15  IP-----LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLV 68
           IP     L L+  ++  +    +    P++ +L                 L  N++  + 
Sbjct: 27  IPLHTTELLLNDNELGRISSDGLFGRLPHLVKL----------------ELKRNQLTGIE 70

Query: 69  YGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV-- 125
               +   H   L         L  N IK +   MF     LK L L+ NQI     V  
Sbjct: 71  PNAFEGASHIQELQ--------LGENKIKEISNKMFLGLHQLKTLNLYDNQIS---CVMP 119

Query: 126 --FVLRRVNSLRTLSLYGNP 143
             F    +NSL +L+L  NP
Sbjct: 120 GSF--EHLNSLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 12/97 (12%)

Query: 54  DTRSLWLSHNKISLVYG---LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK 110
            T  L L+ N++  +        L H           ++L  N +  ++ N F    +++
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLV--------KLELKRNQLTGIEPNAFEGASHIQ 81

Query: 111 ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            L L +N+I+E +S  +   ++ L+TL+LY N I  +
Sbjct: 82  ELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCV 117

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L   +N++     L +      L       ++L++N I  +  N       ++ L   
Sbjct: 333 GMLECLYNQLEGK--LPAFGSEIKLA-----SLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N+++   ++F  + V+ +  +    N I  +
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNMFTNFPNL 109
            ++  S+N+I     +D      +              I+LS N I    K +F+    L
Sbjct: 405 SAIDFSYNEIG---SVDGKNFDPL--DPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 110 KILYLHKNQIEE------YLSVFVLRRVNSLRTLSLYGNPIEKI 147
             + L  N + E             +    L ++ L  N + K+
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDL--IGWIDLSFNNIKNVDK-NMFTNFPNLKIL 112
           + + ++ N+      L          P    I  I + +NN+K             L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
               NQ+E  L  F       L +L+L  N I +I
Sbjct: 336 ECLYNQLEGKLPAFG--SEIKLASLNLAYNQITEI 368

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 56  RSLWLSHNKIS-LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
             + LS+N  S       +          +    D   N          T  P+L  L +
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFG--IRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
             N I + ++  +     ++  L +  NP   I
Sbjct: 574 GSNDIRK-VNEKIT---PNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 9/107 (8%), Positives = 31/107 (28%), Gaps = 20/107 (18%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN-----VDKNMFT------ 104
           R  ++ ++        ++  +            DL ++N+K+     V            
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 105 --NFPNLKILYLHKNQIEEYLSVFV-------LRRVNSLRTLSLYGN 142
               P ++++ +  N+      +               ++ + +  N
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 26/126 (20%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVH-------------RLGESPPMLVGRYDT-RSLWLSH 62
           +D S+ +I S+D      L P                ++ + P  L        S+ L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 63  NKISLVYGLDSLVHRTILDPDLIG------WIDLSFNNIKNVDKNM-FTNFPNLKILYLH 115
           N ++    +     +     +          IDL FN +  +  +   T  P L  + L 
Sbjct: 467 NMLT---EIPKNSLKDE--NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 116 KNQIEE 121
            N   +
Sbjct: 522 YNSFSK 527

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 14/93 (15%)

Query: 54  DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
            T++L LS N I  L    +  L    +L         LS N I+++D ++F    +L+ 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVL--------RLSHNRIRSLDFHVFLFNQDLEY 104

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
           L +  N+++  +S   +    SLR L L  N  
Sbjct: 105 LDVSHNRLQN-ISCCPMA---SLRHLDLSFNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 30/133 (22%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           L LS   I  L    +  L      L             R L LSHN+I SL + +    
Sbjct: 57  LSLSQNSISELRMPDISFLS----EL-------------RVLRLSHNRIRSLDFHVFLFN 99

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                L        D+S N ++N+         +L+ L L  N  +          +  L
Sbjct: 100 QDLEYL--------DVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 135 RTLSLYGNPIEKI 147
             L L      ++
Sbjct: 149 TFLGLSAAKFRQL 161

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 15/93 (16%)

Query: 58  LWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK 116
           L L +N+I S+   +  L     L+        ++ N +K+V   +F    +L+ ++LH 
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELN--------VASNQLKSVPDGVFDRLTSLQYIWLHD 506

Query: 117 NQIE------EYLSVFVLRRVNSLRTLSLYGNP 143
           N  +       YLS ++ +    +R  +    P
Sbjct: 507 NPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 539

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 65  ISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYLHKNQIEEYL 123
           +  ++ L    + T L         +     +++++         L+ L + K+ +  ++
Sbjct: 21  LDSLHHLPGAENLTELY--------IENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71

Query: 124 SVFVLRRVNSLRTLSLYGNPIEKIRE 149
           +         L  L+L  N +E +  
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSW 97

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 19/110 (17%)

Query: 41  RLGESPPMLVGRYDTRSLWLSHNK-ISLV-----YGLDSLVHRTILDPDLIGWIDLSFNN 94
              +S   L G  +   L++ + + +  +      GL  L +           + +  + 
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN-----------LTIVKSG 67

Query: 95  IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
           ++ V  + F   P L  L L  N + E LS   ++ + SL+ L L GNP+
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGL-SLQELVLSGNPL 115

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 54  DTRSLWLSHNKI-SLVYG-LDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
            T  L +S N I  L    + SL    IL         +S N I+ +D ++F     L+ 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILI--------ISHNRIQYLDISVFKFNQELEY 73

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L L  N+    L         +L+ L L  N  + +
Sbjct: 74  LDLSHNK----LVKISCHPTVNLKHLDLSFNAFDAL 105

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 30/154 (19%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLG------ESPPMLVGRYD----TRSLWLSHNKIS 66
           LD S   +          L   +  L       +    +          + L +S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 67  LVYG---LDSLVHRTILD--------------PDLIGWIDLSFNNIKNVDKNMFTNFPNL 109
                           L+              P  I  +DL  N IK++ K +      L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEAL 446

Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
           + L +  NQ++  +   +  R+ SL+ + L+ NP
Sbjct: 447 QELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 12/98 (12%)

Query: 54  DTRSLWLSHNKISLVY--GLDSLVHRTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNL 109
               L  S+N ++         L     L         L  N +K + K   M T   +L
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLI--------LQMNQLKELSKIAEMTTQMKSL 376

Query: 110 KILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           + L + +N +             SL +L++  N +   
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 30/133 (22%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYG-LDSL 74
           L++S   I  L    +  L             L      R L +SHN+I  L        
Sbjct: 26  LNISQNYISELWTSDILSL-----------SKL------RILIISHNRIQYLDISVFKFN 68

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                L        DLS N +  +         NLK L L  N  +          ++ L
Sbjct: 69  QELEYL--------DLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 135 RTLSLYGNPIEKI 147
           + L L    +EK 
Sbjct: 118 KFLGLSTTHLEKS 130

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 18/105 (17%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILD-----PDLIG--------WIDLSFNNIKNVDKNM 102
             L LS N IS +  L  L     L       DL           +D+S N + ++    
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-- 194

Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
                NL+ L    NQI     +  L  + +L  LSL GN ++ I
Sbjct: 195 LAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDI 236

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             +  S+N+++ +  L +L     +         ++ N I ++      N  NL  L L 
Sbjct: 71  TQINFSNNQLTDITPLKNLTKLVDIL--------MNNNQIADITP--LANLTNLTGLTLF 120

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQI     +  L+ + +L  L L  N I  I
Sbjct: 121 NNQIT---DIDPLKNLTNLNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            +L L+ N++  +  + +L + T L         L FNNI ++  +  ++   L+ L+ +
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLT--------LYFNNISDI--SPVSSLTKLQRLFFY 339

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            N++     V  L  + ++  LS   N I  +  
Sbjct: 340 NNKVS---DVSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            SL  ++N+IS +  L  L +   L         L+ N +K++      +  NL  L L 
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELS--------LNGNQLKDIGT--LASLTNLTDLDLA 251

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQI     +  L     L  L L  N I  I
Sbjct: 252 NNQISNLAPLSGL---TKLTELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            +L      I  + G++ L + T +        + S N + ++      N   L  + ++
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQI--------NFSNNQLTDITP--LKNLTKLVDILMN 98

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQI     +  L  + +L  L+L+ N I  I
Sbjct: 99  NNQIA---DITPLANLTNLTGLTLFNNQITDI 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             L L  N+IS +  L  L   T L        +L+ N ++++     +N  NL  L L+
Sbjct: 268 TELKLGANQISNISPLAGLTALTNL--------ELNENQLEDISP--ISNLKNLTYLTLY 317

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            N I     +  +  +  L+ L  Y N +  +  
Sbjct: 318 FNNIS---DISPVSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 13/92 (14%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
               L    ++       L   T L              IK++D        NL  +   
Sbjct: 27  MKTVLGKTNVTDTVSQTDLDQVTTL--------QADRLGIKSIDG--VEYLNNLTQINFS 76

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            NQ+     +  L+ +  L  + +  N I  I
Sbjct: 77  NNQLT---DITPLKNLTKLVDILMNNNQIADI 105

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 28/133 (21%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           L+L + Q+Q+L       L                  +  +L L++N++ SL  G+ D L
Sbjct: 64  LNLDYNQLQTLSAGVFDDLT-----------------ELGTLGLANNQLASLPLGVFDHL 106

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
                L         L  N +K++   +F     LK L L+ NQ++  +      ++ +L
Sbjct: 107 TQLDKLY--------LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNL 157

Query: 135 RTLSLYGNPIEKI 147
           +TLSL  N ++ +
Sbjct: 158 QTLSLSTNQLQSV 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 54  DTRSLWLSHNKISLV--YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
           DT  L L    ++ +       L   T L+        L +N ++ +   +F +   L  
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGLTKLTWLN--------LDYNQLQTLSAGVFDDLTELGT 87

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
           L L  NQ+   L + V   +  L  L L GN ++ +
Sbjct: 88  LGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSL 122

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 54  DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
            T+ L+L  N+I  L  G+ D L   T LD        L  N +  +   +F     L  
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLD--------LDNNQLTVLPAGVFDKLTQLTQ 82

Query: 112 LYLHKNQIEEYLSV----FVLRRVNSLRTLSLYGNP 143
           L L+ NQ++   S+    F    + SL  + L  NP
Sbjct: 83  LSLNDNQLK---SIPRGAF--DNLKSLTHIWLLNNP 113

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 30/150 (20%)

Query: 17  LDLSFQQIQSLDK-----VAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGL 71
           L  S   +  L +      ++     N+  L + PP+L        L +S+N++  +  L
Sbjct: 96  LVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL------EYLGVSNNQLEKLPEL 149

Query: 72  DSLVHRTILD---------PDLIG---WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI 119
            +     I+D         PDL     +I    N ++ + +    N P L  +Y   N +
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSL 207

Query: 120 EEYLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
           ++     +     SL ++    N +E++ E
Sbjct: 208 KK-----LPDLPLSLESIVAGNNILEELPE 232

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 54  DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
           D + LWL++N+I  L  G+ D LV+   L          + N +  +   +F     L  
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLY--------FNSNKLTAIPTGVFDKLTQLTQ 85

Query: 112 LYLHKNQIEEYLSV----FVLRRVNSLRTLSLYGNP 143
           L L+ N ++   S+    F    + SL  + LY NP
Sbjct: 86  LDLNDNHLK---SIPRGAF--DNLKSLTHIYLYNNP 116

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 7/88 (7%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L +++   +    +  L +   L         +   ++ +      +   +L +L + 
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLR--------IMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
            +  ++   +  +  +  + ++ L  N 
Sbjct: 121 HSAHDD-SILTKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
             + L++  ++ + G++   +   L         ++  +  N   N  +   NL+ L + 
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDL--------TINNIHATNY--NPISGLSNLERLRIM 96

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIE 145
              +     +  L  + SL  L +  +  +
Sbjct: 97  GKDVTS-DKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNFPNLKILYL 114
             L +SH+       L  +     ++      IDLS+N  I ++        P LK L +
Sbjct: 115 TLLDISHSAHDDS-ILTKINTLPKVN-----SIDLSYNGAITDIMP--LKTLPELKSLNI 166

Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR 148
             + +        +     L  L  +   I   +
Sbjct: 167 QFDGVH---DYRGIEDFPKLNQLYAFSQTIGGKK 197

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
            SL   ++ I+ + G++ L   T L          + NNI  +D    +   NL  L   
Sbjct: 45  TSLDCHNSSITDMTGIEKLTGLTKL--------ICTSNNITTLD---LSQNTNLTYLACD 93

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI 147
            N++        +  +  L  L+   N + K+
Sbjct: 94  SNKLTN----LDVTPLTKLTYLNCDTNKLTKL 121

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 18/133 (13%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGE--SPPMLVGRYDTRSLWLSHNKISLVYGLDSL 74
           L+ +   +  +D     +L      L +  +   +  +    +L  S NKI+ +      
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL------ 185

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL 134
               +    L+  ++   NNI  +D         L  L    N++ E      +  +  L
Sbjct: 186 ---DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE----IDVTPLTQL 235

Query: 135 RTLSLYGNPIEKI 147
                  NP+ ++
Sbjct: 236 TYFDCSVNPLTEL 248

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 37/138 (26%)

Query: 15  IP-----LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLV 68
           IP     L+L   ++QSL      KL     +L +             L LS N+I SL 
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLT----QLTK-------------LSLSQNQIQSLP 68

Query: 69  YGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV-- 125
            G+ D L   TIL         L  N ++++   +F     LK L L  NQ++   SV  
Sbjct: 69  DGVFDKLTKLTILY--------LHENKLQSLPNGVFDKLTQLKELALDTNQLK---SVPD 117

Query: 126 FVLRRVNSLRTLSLYGNP 143
            +  R+ SL+ + L+ NP
Sbjct: 118 GIFDRLTSLQKIWLHTNP 135

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 4/156 (2%)

Query: 14  KIPLDLSFQQIQSLDKVAVQKLK-PNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLD 72
           +IP  + F  ++ L    +Q+L   N+   G +PP L+         L+   +S      
Sbjct: 79  RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA 138

Query: 73  SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI---EEYLSVFVLR 129
            L          +  + ++  +  N        FP L  L L  N        +S     
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD 165
           +  +L+ L+L    +E      + ++    QL  LD
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L LSHN +    G  S    + L+      ++LSF  +K V K +      L +L L 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLN-----SLNLSFTGLKQVPKGLP---AKLSVLDLS 282

Query: 116 KNQIEEYLSVFVLRRVNSLRTLSLYGNPI 144
            N+++   S   L     +  LSL GNP 
Sbjct: 283 YNRLDRNPSPDELP---QVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 16  PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDT-RSLWLSHNKISLVYGLDSL 74
             D    ++Q   K  ++ L              V  +    +L LS N      GL S 
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKN---MFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
           +         +  + L    ++        +      L+ L L  N + +          
Sbjct: 195 LCPLKFP--TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 132 NSLRTLSLYGNPIEKI 147
           + L +L+L    ++++
Sbjct: 253 SQLNSLNLSFTGLKQV 268

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 28/141 (19%)

Query: 17  LDLSFQQIQSLDKVAVQKLKP------NVHRLGESPPMLVGRYD----TRSLWLSHNKI- 65
           LDL    ++SL      +L          ++L   P    G ++       L LS N++ 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTNQLQ 89

Query: 66  SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
           SL  G+ D L     L         L+ N ++++   +F     LK L L++NQ++   S
Sbjct: 90  SLPNGVFDKLTQLKELA--------LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK---S 138

Query: 125 V--FVLRRVNSLRTLSLYGNP 143
           V   V  R+ SL+ + L+ NP
Sbjct: 139 VPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 54  DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
            T  L L  N +       SL +    +   +  + L  N ++++   +F    +L  L 
Sbjct: 29  QTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82

Query: 114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
           L  NQ++  L   V  ++  L+ L+L  N
Sbjct: 83  LSTNQLQS-LPNGVFDKLTQLKELALNTN 110

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 26/148 (17%)

Query: 17  LDLSFQQIQSL----DKVAVQKLKPNVHRLGESP--PMLVGRYDTRSLWLSHNKISLVYG 70
            +L  + +       +  ++ ++  N   +        L    + R L L  NK+  +  
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP---NVRYLALGGNKLHDISA 80

Query: 71  LDSLVHRTILD----------------PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
           L  L + T L                    +  + L  N ++++   +F    NL  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140

Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
             NQ++  L   V  ++ +L  L L  N
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 40/147 (27%)

Query: 17  LDLSFQQIQSLDKVAVQKLKP------NVHRLGESPPMLVGRYD----TRSLWLSHNKI- 65
           L L+  Q+QSL      KL          ++L   P    G +D       L L+HN++ 
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTNLTYLNLAHNQLQ 146

Query: 66  SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS 124
           SL  G+ D L + T LD        LS+N ++++ + +F     LK L L++NQ      
Sbjct: 147 SLPKGVFDKLTNLTELD--------LSYNQLQSLPEGVFDKLTQLKDLRLYQNQ------ 192

Query: 125 VFVLRRV--------NSLRTLSLYGNP 143
              L+ V         SL+ + L+ NP
Sbjct: 193 ---LKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 22/136 (16%)

Query: 17  LDLSFQQIQSL---DK-VAVQKLKPNVHRLGESPPMLVGRYD----TRSLWLSHNKI-SL 67
           L L   ++  +    +   +  L    ++L   P    G +D     + L L  N++ SL
Sbjct: 68  LALGGNKLHDISALKELTNLTYLILTGNQLQSLPN---GVFDKLTNLKELVLVENQLQSL 124

Query: 68  VYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVF 126
             G+ D L + T L+        L+ N ++++ K +F    NL  L L  NQ++  L   
Sbjct: 125 PDGVFDKLTNLTYLN--------LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEG 175

Query: 127 VLRRVNSLRTLSLYGN 142
           V  ++  L+ L LY N
Sbjct: 176 VFDKLTQLKDLRLYQN 191

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 44/129 (34%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIG---WIDLSFNNIK------------NVDK 100
             L ++ N       L SL       P+L     ++D   N +             +VD 
Sbjct: 83  TVLEITQNA------LISL-------PELPASLEYLDACDNRLSTLPELPASLKHLDVDN 129

Query: 101 NMFTNFP----NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST 156
           N  T  P     L+ +    NQ+       +     SL  LS+  N +  + E       
Sbjct: 130 NQLTMLPELPALLEYINADNNQLTM-----LPELPTSLEVLSVRNNQLTFLPE------- 177

Query: 157 MIPQLVTLD 165
           +   L  LD
Sbjct: 178 LPESLEALD 186

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 54  DTRSLWLSHNKI-SLVYGL-DSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKI 111
           + + L+L  N+I  L  G+ DSL++           + L  N +  +   +F +   L +
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLK--------ELYLGSNQLGALPVGVFDSLTQLTV 92

Query: 112 LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
           L L  NQ+   L   V  R+  L+ L +  N
Sbjct: 93  LDLGTNQLTV-LPSAVFDRLVHLKELFMCCN 122

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 49/151 (32%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYGL-DSL 74
           L L   QI  L+      L                  + + L+L  N++ +L  G+ DSL
Sbjct: 45  LYLHDNQITKLEPGVFDSLI-----------------NLKELYLGSNQLGALPVGVFDSL 87

Query: 75  VHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE------------- 121
              T+LD        L  N +  +   +F    +LK L++  N++ E             
Sbjct: 88  TQLTVLD--------LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 122 -YLSVFVLRRV--------NSLRTLSLYGNP 143
             L    L+ +        +SL    L+GNP
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 56  RSLWLSHNKIS------LVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFT 104
           R L L+   +S      +V     L +  +        + L +N I     + +   +  
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDE 300

Query: 105 NFPNLKILYLHKNQIEE 121
             P+L  L L+ N+  E
Sbjct: 301 KMPDLLFLELNGNRFSE 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 21/129 (16%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIG---WIDLSFNNIKNVDKNMFTNFPNLKIL 112
           + L +S N+++ +             P L      + +  N +  + +++  +  +   +
Sbjct: 244 KELMVSGNRLTSL-------------PMLPSGLLSLSVYRNQLTRLPESLI-HLSSETTV 289

Query: 113 YLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS 172
            L  N     LS   L+ +  + +   Y  PI +     A        L    + +++P+
Sbjct: 290 NLEGNP----LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 173 EKQETNALN 181
            + E    +
Sbjct: 346 REGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 30/148 (20%)

Query: 17  LDLSFQQIQSLDK-----VAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKI-SLVYG 70
           L++S  Q+ SL       + +      +  L   P  L        LW+  N++ SL   
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL------CKLWIFGNQLTSLPVL 139

Query: 71  LDSLVHRTILD------PDLIG---WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEE 121
              L   ++ D      P L      +    N + ++          L+ L +  NQ+  
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS 195

Query: 122 YLSVFVLRRVNSLRTLSLYGNPIEKIRE 149
            L        + L  L  Y N +  +  
Sbjct: 196 -LPTL----PSELYKLWAYNNRLTSLPA 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 42  LGESPPMLVGRYDTRSLWLSHNK----ISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN 97
                  L+      SL+LS++     +S      SL             +DLS N++  
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS-----------LDLSRNSLSG 114

Query: 98  V--DKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVS 155
                    +   LK L +  N ++    V    ++NSL  L L  N I        V+S
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 156 TMIPQLVTLD 165
               +L  L 
Sbjct: 175 DGCGELKHLA 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.66
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.63
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.59
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.55
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.55
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.53
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.51
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.5
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.47
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.4
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.2
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.2
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.38
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.44
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.78
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	82.44

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1e-18  Score=133.15  Aligned_cols=132  Identities=21%  Similarity=0.212  Sum_probs=114.1

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|+|+.++...+.++++                 |+.|++++|+++.+.+      ..|..+++|+.|++++|
T Consensus        34 l~~L~l~~n~i~~i~~~~~~~l~~-----------------L~~L~Ls~N~i~~~~~------~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           34 ITEIRLEQNTIKVIPPGAFSPYKK-----------------LRRIDLSNNQISELAP------DAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTT-----------------CCEEECCSSCCCEECT------TTTTTCSSCCEEECCSS
T ss_pred             CCEEECCCCcCCCcCHhHhhCCCC-----------------CCEEECCCCcCCCcCH------HHhhCCcCCCEEECCCC
Confidence            445666666666666555554444                 9999999999999976      88999999999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeCCCCcC
Confidence            9999999888999999999999999999986 789999999999999999999876   46888999999999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.78  E-value=2e-18  Score=127.02  Aligned_cols=143  Identities=22%  Similarity=0.228  Sum_probs=124.5

Q ss_pred             CCcceeCCCCCccccchhhhcccC-CcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLK-PNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~-~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      ....|++++|+++.++...  .+. +                 |+.|++++|.++.++        .+..+++|+.|+++
T Consensus        20 ~L~~L~l~~n~l~~i~~~~--~~~~~-----------------L~~L~Ls~N~l~~~~--------~l~~l~~L~~L~Ls   72 (176)
T 1a9n_A           20 RDRELDLRGYKIPVIENLG--ATLDQ-----------------FDAIDFSDNEIRKLD--------GFPLLRRLKTLLVN   72 (176)
T ss_dssp             SCEEEECTTSCCCSCCCGG--GGTTC-----------------CSEEECCSSCCCEEC--------CCCCCSSCCEEECC
T ss_pred             CceEEEeeCCCCchhHHhh--hcCCC-----------------CCEEECCCCCCCccc--------ccccCCCCCEEECC
Confidence            4567999999999886532  233 5                 999999999999874        46778999999999


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~  171 (210)
                      +|+++.+++..+..+++|+.|++++|.+..++.+..+..+++|+.|++++|++..++.++...+..+++|+.||++.|..
T Consensus        73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999998876788999999999999999888545788999999999999999999987777899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy4162         172 SEKQETNALNA  182 (210)
Q Consensus       172 ~~~~~~~~~~~  182 (210)
                      .++..++.++.
T Consensus       153 ~~~~~~~~~~~  163 (176)
T 1a9n_A          153 KERQEAEKMFK  163 (176)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHHh
Confidence            99887776655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.4e-18  Score=130.29  Aligned_cols=113  Identities=26%  Similarity=0.237  Sum_probs=103.0

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  130 (210)
                      .+++|+.|++++|.++.+++      ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++ ..+..
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~  127 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEE------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIG  127 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTT
T ss_pred             cCCCCCEEECCCCcCCEECH------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCC
Confidence            45559999999999999987      789999999999999999999999889999999999999999999976 78899


Q ss_pred             CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++|+.|++++|.++.+++   ..+..+++|+.|++++|+...
T Consensus       128 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          128 LSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcCCcC
Confidence            9999999999999999855   378899999999999998653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=5.6e-18  Score=129.82  Aligned_cols=112  Identities=17%  Similarity=0.165  Sum_probs=101.2

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+++|+.|++++|+++.++.      ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|.++.++  ..+.
T Consensus        61 ~~l~~L~~L~L~~N~l~~i~~------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~  132 (229)
T 3e6j_A           61 DSLINLKELYLGSNQLGALPV------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIE  132 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGG
T ss_pred             hCccCCcEEECCCCCCCCcCh------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC--cccc
Confidence            345559999999999999987      77899999999999999999999888899999999999999999887  5578


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      .+++|+.|++++|.+..++.   ..+..+++|+.|++.+|+..
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBC
T ss_pred             cCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCcc
Confidence            99999999999999999876   46889999999999999865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=4.7e-18  Score=146.90  Aligned_cols=135  Identities=19%  Similarity=0.209  Sum_probs=118.3

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL   90 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L   90 (210)
                      |...+.||+++|+|+.+++..|.++++                 |+.|+|++|+|+.+++      ..|.++++|++|+|
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~-----------------L~~L~Ls~N~i~~i~~------~~f~~L~~L~~L~L  107 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPE-----------------LQVLDLSRCEIQTIED------GAYQSLSHLSTLIL  107 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEEC
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCC-----------------CCEEECCCCcCCCcCh------hHhcCCCCCCEEEc
Confidence            456778999999999999888887777                 9999999999999987      88999999999999


Q ss_pred             cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc--cchHHHHHHhCcCcccccCCC
Q psy4162          91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++|+++.+++..|..+.+|+.|++++|.++.+++ ..++++++|+.|++++|.+..+  +.    .+..+++|+.|++++
T Consensus       108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          108 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSS  182 (635)
T ss_dssp             TTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCS
T ss_pred             cCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch----hhccchhhhhhcccC
Confidence            9999999998888999999999999999999886 7789999999999999999864  44    578899999999998


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+.+
T Consensus       183 N~l~~  187 (635)
T 4g8a_A          183 NKIQS  187 (635)
T ss_dssp             SCCCE
T ss_pred             ccccc
Confidence            87543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=8.6e-18  Score=130.33  Aligned_cols=152  Identities=18%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             CCCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      .....|++++|+++.+.+..+.++++ ..+.+...   ...   +..+++|+.|++++|.++.+++      ..|..+++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~  108 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL------GVFDHLTQ  108 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTT
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh------hHhcccCC
Confidence            35667999999999998877766555 12222222   222   2678999999999999999887      78899999


Q ss_pred             CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      |+.|++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|
T Consensus       109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L  184 (251)
T 3m19_A          109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPH---GAFDRLGKLQTI  184 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEE
T ss_pred             CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCH---HHHhCCCCCCEE
Confidence            9999999999999998878899999999999999999986 778999999999999999999876   468889999999


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|+...
T Consensus       185 ~l~~N~~~c  193 (251)
T 3m19_A          185 TLFGNQFDC  193 (251)
T ss_dssp             ECCSCCBCT
T ss_pred             EeeCCceeC
Confidence            999998744

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=1.2e-17  Score=129.57  Aligned_cols=149  Identities=19%  Similarity=0.174  Sum_probs=122.7

Q ss_pred             cceeCCCCCccccchhhhcccCCccc-ccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVH-RLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL   90 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~-~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L   90 (210)
                      ..++++++.++.++......+....+ ...+....   +..+++|+.|++++|.++.+++      ..|..+++|+.|++
T Consensus        17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L   90 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA------GVFDDLTELGTLGL   90 (251)
T ss_dssp             TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEEC
T ss_pred             eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH------hHhccCCcCCEEEC
Confidence            46999999999988754332221111 11222222   3778999999999999999887      78899999999999


Q ss_pred             cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162          91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus        91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      ++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCc
Confidence            9999999998888999999999999999999886 778899999999999999999877   468899999999999997


Q ss_pred             HHH
Q psy4162         171 PSE  173 (210)
Q Consensus       171 ~~~  173 (210)
                      +..
T Consensus       167 l~~  169 (251)
T 3m19_A          167 LQS  169 (251)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.6e-17  Score=125.20  Aligned_cols=132  Identities=21%  Similarity=0.271  Sum_probs=115.3

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....|++++|+++.++...+.++++                 |+.|++++|+++.+++      ..|..+++|+.|++++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTS-----------------LTQLYLGGNKLQSLPN------GVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred             CCcEEEcCCCccCcCChhhhccccc-----------------CcEEECCCCccCccCh------hhcCCCCCcCEEECCC
Confidence            4556888888887777766665566                 9999999999999886      7788999999999999


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~  171 (210)
                      |+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+++++.   ..+..+++|+.|++++|+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCCB
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH---HHhccCCCccEEEecCCCe
Confidence            99999998878899999999999999999885 678899999999999999998877   3578899999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=7.1e-17  Score=127.94  Aligned_cols=150  Identities=17%  Similarity=0.016  Sum_probs=95.3

Q ss_pred             CCCcceeCCCCCccccchhhhcccCC-cccccCCCCCC---------------------------CCCCCCccEEEccCC
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM---------------------------LVGRYDTRSLWLSHN   63 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~---------------------------~~~l~~L~~L~ls~n   63 (210)
                      .....|++++|.++.+.+..+.++++ ..+.+....+.                           ..++++|+.|++++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence            35567888888888887766655444 11111111111                           134445555555555


Q ss_pred             ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCC
Q psy4162          64 KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP  143 (210)
Q Consensus        64 ~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~  143 (210)
                      +++.+++      ..|..+++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++ ..+..+++|+.|++++|.
T Consensus       111 ~l~~l~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          111 RLTSLPL------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CCCCCCS------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             cCcccCH------HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCc
Confidence            5555544      556666777777777777777766666667777777777777777664 556677777777777777


Q ss_pred             CCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         144 IEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       144 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      ++.++.    .+..+++|+.|++.+|+..
T Consensus       184 l~~ip~----~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          184 LYTIPK----GFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCCT----TTTTTCCCSEEECCSCCBC
T ss_pred             CCccCh----hhcccccCCeEEeCCCCcc
Confidence            777766    4556667777778777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.6e-17  Score=134.19  Aligned_cols=150  Identities=23%  Similarity=0.222  Sum_probs=99.7

Q ss_pred             CCcceeCCCCCccccchhhhc-ccCC-cccccCCCCC---C---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQ-KLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~-~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      ....|++++|+|+.++...+. ++++ ..+.+.-..+   .   +..+++|+.|+|++|+++.+++      ..|..+++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~  113 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE------FLFSDLQA  113 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTT
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH------HHhCCCcC
Confidence            455688888888887776554 4444 1111111111   1   2566777777777777777765      66777777


Q ss_pred             CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc---ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162          85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL---RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL  161 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L  161 (210)
                      |+.|+|++|+++.+.+..|..+++|+.|++++|.++.++. ..+   ..+++|+.|+|++|.++.++.   ..+..++.+
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~~  189 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPL---TDLQKLPAW  189 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCH---HHHHHSCHH
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCH---HHhhhccHh
Confidence            7777777777777776667777777777777777777764 444   457777788888887777765   456667663


Q ss_pred             --ccccCCCCCHH
Q psy4162         162 --VTLDSVFILPS  172 (210)
Q Consensus       162 --~~L~l~~~~~~  172 (210)
                        +.|++.+|+..
T Consensus       190 ~l~~l~l~~N~~~  202 (361)
T 2xot_A          190 VKNGLYLHNNPLE  202 (361)
T ss_dssp             HHTTEECCSSCEE
T ss_pred             hcceEEecCCCcc
Confidence              67777777754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=3e-17  Score=119.65  Aligned_cols=137  Identities=21%  Similarity=0.263  Sum_probs=116.7

Q ss_pred             CCCCcceeCCCCCcc--ccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          11 PEFKIPLDLSFQQIQ--SLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~--~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      |.....|++++|+++  .++.. +..+++                 |+.|++++|.++.+        ..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~-----------------L~~L~l~~n~l~~~--------~~~~~l~~L~~L   76 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-TAEFVN-----------------LEFLSLINVGLISV--------SNLPKLPKLKKL   76 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-CGGGGG-----------------CCEEEEESSCCCCC--------SSCCCCSSCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHH-HHhCCC-----------------CCEEeCcCCCCCCh--------hhhccCCCCCEE
Confidence            345677999999998  67654 455667                 99999999999987        346778999999


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++...+..+..+++|+.|++++|.++.++....+..+++|+.|++++|+++.++.++...+..+++|+.|++.+
T Consensus        77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            99999999966665777999999999999999986446788999999999999999999887777899999999999999


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |...+
T Consensus       157 n~~~~  161 (168)
T 2ell_A          157 REDQE  161 (168)
T ss_dssp             TTSCB
T ss_pred             CChhh
Confidence            87644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=5e-17  Score=127.34  Aligned_cols=151  Identities=21%  Similarity=0.241  Sum_probs=121.7

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+++.++...+.++++ ..+.+.   +....   +..+++|+.|++++|.++.++.      ..|..+++|
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L  111 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI------GVFDQLVNL  111 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT------TTTTTCSSC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH------hHcccccCC
Confidence            4567999999998888766665555 112221   22222   2668889999999999998886      778888999


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD  165 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~  165 (210)
                      +.|++++|+++.+++..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..++.   ..+..+++|+.|+
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  187 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPE---GAFDKLTELKTLK  187 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeCh---hHhccCCCcCEEE
Confidence            999999999999988878899999999999999998885 678889999999999999998876   3578899999999


Q ss_pred             CCCCCHHH
Q psy4162         166 SVFILPSE  173 (210)
Q Consensus       166 l~~~~~~~  173 (210)
                      +++|.+..
T Consensus       188 L~~N~l~~  195 (270)
T 2o6q_A          188 LDNNQLKR  195 (270)
T ss_dssp             CCSSCCSC
T ss_pred             CCCCcCCc
Confidence            99887643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=5.1e-17  Score=121.35  Aligned_cols=128  Identities=25%  Similarity=0.251  Sum_probs=111.0

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...+++++|+++.++....   ++                 ++.|++++|.++.++       ..|..+++|+.|++++|
T Consensus        12 ~~~l~~~~~~l~~ip~~~~---~~-----------------l~~L~L~~n~i~~ip-------~~~~~l~~L~~L~Ls~N   64 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP---RD-----------------VTELYLDGNQFTLVP-------KELSNYKHLTLIDLSNN   64 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TT-----------------CCEEECCSSCCCSCC-------GGGGGCTTCCEEECCSS
T ss_pred             CCEEEcCCCCCCcCCCCCC---CC-----------------CCEEECCCCcCchhH-------HHhhcccCCCEEECCCC
Confidence            3568999999999886432   34                 999999999999876       67888899999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|+..
T Consensus        65 ~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           65 RISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEE
T ss_pred             cCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCee
Confidence            9999998889999999999999999999886 788999999999999999998877   46788999999999999764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=9.6e-17  Score=125.69  Aligned_cols=148  Identities=19%  Similarity=0.199  Sum_probs=125.1

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      ...|++++|.++.++...+.++++ ..+.+.   +....   +..+++|+.|++++|.++.+++      ..|..+++|+
T Consensus        63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~  136 (270)
T 2o6q_A           63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP------RVFDSLTKLT  136 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred             CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH------HHhCcCcCCC
Confidence            456999999999988877665555 122222   22222   2778999999999999999987      7889999999


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                      .|++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++
T Consensus       137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQL  212 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEe
Confidence            99999999999998888999999999999999999986 778899999999999999999887   46888999999999


Q ss_pred             CCCCH
Q psy4162         167 VFILP  171 (210)
Q Consensus       167 ~~~~~  171 (210)
                      ++|+.
T Consensus       213 ~~N~~  217 (270)
T 2o6q_A          213 QENPW  217 (270)
T ss_dssp             CSSCB
T ss_pred             cCCCe
Confidence            99985

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=9.4e-17  Score=125.93  Aligned_cols=147  Identities=17%  Similarity=0.174  Sum_probs=119.9

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-ccccc---CCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRL---GESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~---~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|.++.++..  ..+++ ..+.+   .+....   +..+++|+.|++++|+++.+++      ..|..+++|
T Consensus        64 ~L~~L~l~~n~l~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L  135 (272)
T 3rfs_A           64 NVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------GVFDKLTNL  135 (272)
T ss_dssp             TCCEEECTTSCCCCCGGG--TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTC
T ss_pred             CCcEEECCCCCCCCchhh--cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------HHhccCCCC
Confidence            345699999999887633  33333 11111   122222   2678899999999999999886      778899999


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD  165 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~  165 (210)
                      +.|++++|+++.+++..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.+.+++.   ..+..+++|+.|+
T Consensus       136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~  211 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIW  211 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred             CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCH---HHHhCCcCCCEEE
Confidence            999999999999998878899999999999999999886 778899999999999999999877   4678999999999


Q ss_pred             CCCCCH
Q psy4162         166 SVFILP  171 (210)
Q Consensus       166 l~~~~~  171 (210)
                      +++|+.
T Consensus       212 l~~N~~  217 (272)
T 3rfs_A          212 LHDNPW  217 (272)
T ss_dssp             CCSSCB
T ss_pred             ccCCCc
Confidence            999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=1.4e-16  Score=126.27  Aligned_cols=127  Identities=24%  Similarity=0.210  Sum_probs=99.9

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      ...|++++|+++.++.. +.++++ ..+.+.   +....   +.++++|+.|++++|+++.+++      ..|..+++|+
T Consensus        79 L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~  151 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP------GLLTPTPKLE  151 (290)
T ss_dssp             CCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCC
T ss_pred             CCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh------hhcccccCCC
Confidence            45578888888776652 222333 111122   22222   3788999999999999999987      7889999999


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      .|++++|+++.+++..+..+++|+.|++++|+++.++  ..+...++|+.+++++|++.+...
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence            9999999999999988889999999999999999988  445667899999999999987655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=2e-16  Score=124.11  Aligned_cols=132  Identities=19%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      .....|++++|+++.++...+.++++                 |+.|++++|.++.+++      ..|..+++|+.|+++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~-----------------L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPE-----------------LQVLDLSRCEIQTIED------GAYQSLSHLSTLILT   84 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTT-----------------CSEEECTTCCCCEECT------TTTTTCTTCCEEECT
T ss_pred             CCccEEECCCCcccccCHhHhccccC-----------------CcEEECCCCcCCccCH------HHccCCcCCCEEECC
Confidence            35677999999999988877766666                 5555555555555543      445555555555555


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCC
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      +|+++.+++..+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+..  ++.    .+..+++|+.|++++|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSS
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCC
Confidence            555555554445555555555555555555443 334555555555555555554  232    3455555555555555


Q ss_pred             CH
Q psy4162         170 LP  171 (210)
Q Consensus       170 ~~  171 (210)
                      .+
T Consensus       160 ~l  161 (276)
T 2z62_A          160 KI  161 (276)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=2.1e-16  Score=124.56  Aligned_cols=151  Identities=21%  Similarity=0.197  Sum_probs=124.7

Q ss_pred             CCcceeCCCCC-ccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          13 FKIPLDLSFQQ-IQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        13 ~~~~L~ls~n~-l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      ....|++++|. ++.+++..+.++++ ..+.+.   +....   +..+++|+.|++++|.++.++.      ..|..+++
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~  154 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD------DTFRDLGN  154 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH------hHhccCCC
Confidence            34669999997 88887766665554 112221   22221   2678899999999999999886      77889999


Q ss_pred             CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      |+.|++++|+++.+++..+..+++|+.|++++|.++...+ ..+..+++|+.|++++|.+.+++.   ..+..+++|+.|
T Consensus       155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L  230 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT---EALAPLRALQYL  230 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEE
T ss_pred             ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCH---HHcccCcccCEE
Confidence            9999999999999998778899999999999999999865 778999999999999999999886   468999999999


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|+...
T Consensus       231 ~l~~N~~~c  239 (285)
T 1ozn_A          231 RLNDNPWVC  239 (285)
T ss_dssp             ECCSSCEEC
T ss_pred             eccCCCccC
Confidence            999998753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.1e-16  Score=119.45  Aligned_cols=129  Identities=18%  Similarity=0.206  Sum_probs=106.7

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhh-ccCCCCCCCEEECcC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHR-TILDPDLIGWIDLSF   92 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~-~~~~l~~L~~L~Ls~   92 (210)
                      ...+++++|+++.++....   ..                 ++.|++++|.++.+++      . .|..+++|+.|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~---~~-----------------l~~L~l~~n~i~~~~~------~~~~~~l~~L~~L~Ls~   63 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP---LH-----------------TTELLLNDNELGRISS------DGLFGRLPHLVKLELKR   63 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSCCCCSBCC------SCSGGGCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC---CC-----------------CCEEECCCCcCCccCC------ccccccCCCCCEEECCC
Confidence            3569999999999887432   24                 8999999999988875      3 477888999999999


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+++.+.+..+..+++|+.|++++|.++.+++ ..+.++++|+.|++++|.++++..   ..+..+++|+.|++++|+..
T Consensus        64 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           64 NQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMP---GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECT---TSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCH---HHhhcCCCCCEEEeCCCCcc
Confidence            99999877778889999999999999988875 678888999999999999987754   36788889999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=2.7e-16  Score=115.58  Aligned_cols=129  Identities=18%  Similarity=0.209  Sum_probs=112.9

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      ..++++.++++.++....   ++                 |+.|++++|+++.+++      ..|..+++|+.|++++|+
T Consensus        10 ~~l~~~~~~l~~~p~~~~---~~-----------------l~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~   63 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP---SS-----------------ATRLELESNKLQSLPH------GVFDKLTQLTKLSLSQNQ   63 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSC
T ss_pred             CEEEecCCCCccCCCCCC---CC-----------------CcEEEeCCCcccEeCH------HHhcCcccccEEECCCCc
Confidence            458899999988875432   35                 9999999999999886      778889999999999999


Q ss_pred             CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      ++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|+...
T Consensus        64 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           64 IQSLPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred             ceEeChhHccCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeec
Confidence            999998878899999999999999999885 678899999999999999999887   357889999999999998654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=1.4e-16  Score=121.24  Aligned_cols=130  Identities=20%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...++++.++++.+|....   ++                 ++.|++++|.|+.+++      ..|..+++|+.|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~---~~-----------------l~~L~l~~n~i~~i~~------~~~~~l~~L~~L~Ls~N   66 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP---ET-----------------ITEIRLEQNTIKVIPP------GAFSPYKKLRRIDLSNN   66 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC---TT-----------------CCEEECCSSCCCEECT------TSSTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC---cC-----------------CCEEECCCCcCCCcCH------hHhhCCCCCCEEECCCC
Confidence            3568999999999887432   34                 9999999999999987      78999999999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++.+.+..|..+++|+.|++++|.++.+++ ..+.++++|+.|++++|.+..++.   ..+..+++|+.|++++|.+..
T Consensus        67 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           67 QISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLRV---DAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             CCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeCH---HHcCCCCCCCEEECCCCcCCE
Confidence            9999988889999999999999999999986 778999999999999999999866   378899999999999997643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=2.8e-16  Score=120.27  Aligned_cols=130  Identities=17%  Similarity=0.133  Sum_probs=116.0

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....++++.++++.++....   ++                 |+.|++++|.++.+++      ..|..+++|+.|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~---~~-----------------L~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~L~~   73 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP---TN-----------------AQILYLHDNQITKLEP------GVFDSLINLKELYLGS   73 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC---CC-----------------CCEEEcCCCccCccCH------HHhhCccCCcEEECCC
Confidence            34559999999999887432   44                 9999999999999977      8899999999999999


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++.    .+..+++|+.|++++|.+.
T Consensus        74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCCC
T ss_pred             CCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcCC
Confidence            99999998888999999999999999999986 778999999999999999999987    6799999999999999765


Q ss_pred             H
Q psy4162         173 E  173 (210)
Q Consensus       173 ~  173 (210)
                      .
T Consensus       149 ~  149 (229)
T 3e6j_A          149 S  149 (229)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=2.1e-16  Score=112.85  Aligned_cols=129  Identities=20%  Similarity=0.293  Sum_probs=105.4

Q ss_pred             CCcceeCCCCCcc--ccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162          13 FKIPLDLSFQQIQ--SLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL   90 (210)
Q Consensus        13 ~~~~L~ls~n~l~--~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L   90 (210)
                      ....|++++|+++  .++. .+..+++                 |+.|++++|.++.+        ..+..+++|+.|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~-~~~~l~~-----------------L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L   71 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEG-LTDEFEE-----------------LEFLSTINVGLTSI--------ANLPKLNKLKKLEL   71 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCS-CCTTCTT-----------------CCEEECTTSCCCCC--------TTCCCCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHH-HHhhcCC-----------------CcEEECcCCCCCCc--------hhhhcCCCCCEEEC
Confidence            4566999999988  5554 3444555                 99999999999887        34667789999999


Q ss_pred             cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162          91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      ++|+++...+..+..+++|+.|++++|.+++++....+..+++|+.|++++|++++.+.++...+..+++|+.||++
T Consensus        72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99999986555567789999999999999987533668889999999999999998888766789999999999886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=4.4e-16  Score=126.93  Aligned_cols=116  Identities=22%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  130 (210)
                      ++.+|+.|++++|+|+.+++      ..|..+++|+.|+|++|+++.+++..|..+++|+.|++++|.++.+.+ ..+.+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~  134 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISS------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFED  134 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTT
T ss_pred             cccccCEEECCCCcCCccCh------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCC
Confidence            88899999999999999987      789999999999999999999988888999999999999999998875 78899


Q ss_pred             CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++|+.|+|++|.++.++......+..+++|+.|++++|.+..
T Consensus       135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            9999999999999999877211112678999999999987643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.66  E-value=5.5e-16  Score=121.53  Aligned_cols=148  Identities=19%  Similarity=0.156  Sum_probs=122.3

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCC---CCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|.++.++...  .+++ ..+.+.-.   ... ...+++|+.|++++|.++.+++      ..|..+++|+.|
T Consensus        43 L~~L~l~~~~i~~~~~l~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L  114 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPN------GVFDKLTNLKEL  114 (272)
T ss_dssp             CCEEECTTSCCCCCTTGG--GCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEE
T ss_pred             eeeeeeCCCCcccccccc--cCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccCh------hHhcCCcCCCEE
Confidence            456999999999887643  3344 11222222   222 3789999999999999999886      778999999999


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+++++.   ..+..+++|+.|++++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPE---GVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCH---HHhcCCccCCEEECCC
Confidence            999999999998878999999999999999999886 778899999999999999998876   3578899999999999


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+..
T Consensus       191 N~l~~  195 (272)
T 3rfs_A          191 NQLKS  195 (272)
T ss_dssp             SCCSC
T ss_pred             CcCCc
Confidence            97654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.66  E-value=6.2e-16  Score=121.82  Aligned_cols=152  Identities=18%  Similarity=0.149  Sum_probs=118.2

Q ss_pred             CCCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCc-cccccCCchhhhhccCCCC
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNK-ISLVYGLDSLVHRTILDPD   83 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~-l~~~~~l~~~~~~~~~~l~   83 (210)
                      .....|++++|.++.++...+.++++ ..+.+....+.      +..+++|+.|++++|. ++.+++      ..+..++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~------~~~~~l~  105 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP------ATFHGLG  105 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT------TTTTTCT
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH------HHhcCCc
Confidence            35667999999999988776665555 11222211111      2678889999999987 888765      7788888


Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      +|+.|++++|+++.+.+..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.++.++.   ..+..+++|+.
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~  181 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDR  181 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCE
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCH---HHhcCccccCE
Confidence            99999999999988877778888999999999999988875 668888999999999999988776   35788899999


Q ss_pred             ccCCCCCHHH
Q psy4162         164 LDSVFILPSE  173 (210)
Q Consensus       164 L~l~~~~~~~  173 (210)
                      |++++|.+.+
T Consensus       182 L~l~~n~l~~  191 (285)
T 1ozn_A          182 LLLHQNRVAH  191 (285)
T ss_dssp             EECCSSCCCE
T ss_pred             EECCCCcccc
Confidence            9999887643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.65  E-value=2.9e-16  Score=135.71  Aligned_cols=128  Identities=17%  Similarity=0.177  Sum_probs=114.1

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      .+++.++.+++.+|..    +|.                +++.|+|++|+|+.+++      ..|..+++|+.|+|++|+
T Consensus        34 ~~~~c~~~~l~~vP~~----lp~----------------~~~~LdLs~N~i~~l~~------~~f~~l~~L~~L~Ls~N~   87 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDN----LPF----------------STKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCE   87 (635)
T ss_dssp             TEEECTTSCCSSCCSS----SCT----------------TCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCC----CCc----------------CCCEEEeeCCCCCCCCH------HHHhCCCCCCEEECCCCc
Confidence            3477788888887762    333                49999999999999997      889999999999999999


Q ss_pred             CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162          95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus        95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+.+++..|..+++|+.|+|++|+++.+++ ..|.++++|+.|++++|.++.++.   ..++.+++|+.|++++|.+.
T Consensus        88 i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~---~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A           88 IQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCCEEECTTSCCCCSTT---CCCTTCTTCCEEECCSSCCC
T ss_pred             CCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCCEEECCCCcCCCCCh---hhhhcCcccCeeccccCccc
Confidence            999999889999999999999999999986 889999999999999999999876   36899999999999998764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=113.22  Aligned_cols=114  Identities=20%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      .....|++++|.|+.++ ..+.++++                 |+.|++++|.|+.+++      ..|..+++|+.|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip-~~~~~l~~-----------------L~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-KELSNYKH-----------------LTLIDLSNNRISTLSN------QSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-GGGGGCTT-----------------CCEEECCSSCCCCCCT------TTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhH-HHhhcccC-----------------CCEEECCCCcCCEeCH------hHccCCCCCCEEECC
Confidence            35677999999999988 46666777                 9999999999999987      889999999999999


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY  150 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  150 (210)
                      +|+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+....
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence            999999999889999999999999999999986 7789999999999999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=4.8e-16  Score=118.32  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=114.0

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...+++++|.++.+|... .  ..                 ++.|++++|.++.+++-     ..|..+++|+.|++++|
T Consensus        13 ~~~l~~s~n~l~~iP~~~-~--~~-----------------~~~L~L~~N~l~~~~~~-----~~~~~l~~L~~L~L~~N   67 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI-P--QY-----------------TAELRLNNNEFTVLEAT-----GIFKKLPQLRKINFSNN   67 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC-C--TT-----------------CSEEECCSSCCCEECCC-----CCGGGCTTCCEEECCSS
T ss_pred             CCEeEeCCCCcccCccCC-C--CC-----------------CCEEEcCCCcCCccCch-----hhhccCCCCCEEECCCC
Confidence            357999999999988632 2  34                 89999999999998531     45788899999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+..+++   ..+..+++|+.|++++|.+..
T Consensus        68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           68 KITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCT---TSSTTCTTCSEEECTTSCCCC
T ss_pred             cCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECH---hHcCCCccCCEEECCCCcCCE
Confidence            9999998889999999999999999999986 789999999999999999999865   368899999999999997654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.64  E-value=7e-16  Score=128.86  Aligned_cols=134  Identities=20%  Similarity=0.183  Sum_probs=116.0

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...+++++|.++.+.+..+..+++                 |+.|++++|.++.+++      ..|..+++|+.|++++|
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTD-----------------LEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTT-----------------CCEEECTTSCCCEECT------TTTTTCTTCCEEECCSS
T ss_pred             ceEEEecCccccccchhhcccCCC-----------------CCEEECCCCcccccCh------hHhcCcccCCEEECCCC
Confidence            445777777777766666655555                 9999999999999876      78999999999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++.+.+..+..+++|+.|++++|.++...+ ..+.++++|+.|++++|.++.++.   ..+..+++|+.|++++|+...
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCccccCCH---hHhccCCcccEEEccCCCccc
Confidence            9999988889999999999999999999875 788999999999999999999887   467899999999999998754


Q ss_pred             H
Q psy4162         174 K  174 (210)
Q Consensus       174 ~  174 (210)
                      .
T Consensus       410 ~  410 (455)
T 3v47_A          410 S  410 (455)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.7e-15  Score=113.24  Aligned_cols=144  Identities=12%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             CcceeCCCCCccccchhhhcccCC---cccccC-CCCCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP---NVHRLG-ESPPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~---~~~~~~-~~~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|.++.++.  +..+++   ..+..+ +.... ...+++|+.|++++|.++....      ..+..+++|+.|
T Consensus        46 L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L  117 (197)
T 4ezg_A           46 LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI------PNLSGLTSLTLL  117 (197)
T ss_dssp             CCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS------CCCTTCTTCCEE
T ss_pred             ccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC------hhhcCCCCCCEE
Confidence            4569999999998874  333444   111111 11112 2667778888888888876443      567777888888


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCc-cCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      ++++|+++...+..+..+++|+.|++++|. ++.++   .+..+++|+.|++++|.+++++.     +..+++|+.|++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~  189 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAF  189 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEEC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEee
Confidence            888888877555557778888888888887 66664   26777888888888888887654     6778888888888


Q ss_pred             CCCHHH
Q psy4162         168 FILPSE  173 (210)
Q Consensus       168 ~~~~~~  173 (210)
                      +|++..
T Consensus       190 ~N~i~~  195 (197)
T 4ezg_A          190 SQTIGG  195 (197)
T ss_dssp             BC----
T ss_pred             CcccCC
Confidence            887543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.63  E-value=2.1e-15  Score=130.29  Aligned_cols=131  Identities=18%  Similarity=0.225  Sum_probs=87.1

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....|++++|+++.+++..+.++++                 |+.|++++|.++.+++      ..|..+++|+.|++++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~-----------------L~~L~Ls~n~l~~i~~------~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSE-----------------LQWLDLSRCEIETIED------KAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECTT
T ss_pred             CcCEEECCCCCcCEeChhhccCCcc-----------------CcEEeCCCCcccccCH------HHhhchhhcCEeECCC
Confidence            3455666666666666655555555                 7777777777776655      6666677777777777


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCCC
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      |+++.+.+..+..+++|+.|++++|.++..++ ..++++++|+.|++++|.+..  +|.    .+..+++|+.|++++|.
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCSSC
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccCCc
Confidence            77777665556677777777777777766664 456667777777777777664  344    56667777777776665


Q ss_pred             H
Q psy4162         171 P  171 (210)
Q Consensus       171 ~  171 (210)
                      +
T Consensus       165 l  165 (606)
T 3vq2_A          165 I  165 (606)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.63  E-value=1e-15  Score=128.11  Aligned_cols=149  Identities=19%  Similarity=0.128  Sum_probs=106.2

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+|+.+.+..|.++++ ..+.+....+.      +.++++|+.|++++|.++.++.      ..|..+++|
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L  149 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS------GAFEYLSKL  149 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT------TTSSSCTTC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh------hhhcccCCC
Confidence            4566888888888887777766655 11222211111      2567777777777777777765      667777777


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccC-CccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHK-NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      +.|++++|+++.+++..+..+++|+.|++++ |.+..++. ..+.++++|+.|++++|.++.++.     +..+++|+.|
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L  223 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEEL  223 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSCCC-----CTTCTTCCEE
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccccc-----ccccccccEE
Confidence            7777777777777776677777777777777 45555553 567788888888888888888865     6778888889


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|.+.+
T Consensus       224 ~Ls~N~l~~  232 (452)
T 3zyi_A          224 EMSGNHFPE  232 (452)
T ss_dssp             ECTTSCCSE
T ss_pred             ECcCCcCcc
Confidence            988887644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=8.1e-16  Score=129.39  Aligned_cols=152  Identities=20%  Similarity=0.193  Sum_probs=119.6

Q ss_pred             CCCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      .....|++++|+++.+++..+.++++ ..+.+.-.   ...   +.++++|+.|++++|.++.++.      ..|..+++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL------GVFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT------TSSTTCTT
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc------ccccCCCC
Confidence            35677999999999998877776665 11222221   111   3778888999998888888876      67888888


Q ss_pred             CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      |+.|++++|++..+.+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+..++.   ..+..+++|+.|
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L  181 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPT---EALSHLHGLIVL  181 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCH---HHHTTCTTCCEE
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccCh---hHhcccCCCcEE
Confidence            9999999998888877778888899999999998888775 678888999999999999988876   468889999999


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|.+..
T Consensus       182 ~l~~n~i~~  190 (477)
T 2id5_A          182 RLRHLNINA  190 (477)
T ss_dssp             EEESCCCCE
T ss_pred             eCCCCcCcE
Confidence            998886543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=2.5e-15  Score=109.91  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=96.6

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...+++++|+++.++....   ..                 |+.|++++|.|+.+++      ..|..+++|+.|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~---~~-----------------l~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N   64 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP---TT-----------------TQVLYLYDNQITKLEP------GVFDRLTQLTRLDLDNN   64 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC---CC-----------------CcEEEcCCCcCCccCh------hhhcCcccCCEEECCCC
Confidence            3569999999999886432   44                 9999999999999987      88999999999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      +++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+.+.
T Consensus        65 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CcCccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999888999999999999999999986 778999999999999999997764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=128.79  Aligned_cols=132  Identities=19%  Similarity=0.198  Sum_probs=89.6

Q ss_pred             CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      .....|++++|+++.++...+.++++                 |+.|++++|.++.+++      ..|..+++|++|+++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~-----------------L~~L~Ls~n~i~~i~~------~~~~~l~~L~~L~L~   84 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPE-----------------LQVLDLSRCEIQTIED------GAYQSLSHLSTLILT   84 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSS-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECT
T ss_pred             ccccEEEccCCccCccChhHhhCCCC-----------------ceEEECCCCcCCccCc------ccccCchhCCEEeCc
Confidence            35567999999998888877776666                 7777777777666655      566666677777777


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC--ccchHHHHHHhCcCcccccCCCC
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK--IREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      +|+++.+++..+..+++|+.|++++|.++.+++ ..++.+++|++|++++|.+..  +|.    .+..+++|+.|++++|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTS
T ss_pred             CCcCCccCHhhhcCccccccccccccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCC
Confidence            776666665556666677777777776666654 446666667777777766664  343    4666666666666666


Q ss_pred             CH
Q psy4162         170 LP  171 (210)
Q Consensus       170 ~~  171 (210)
                      .+
T Consensus       160 ~l  161 (570)
T 2z63_A          160 KI  161 (570)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.62  E-value=1.5e-15  Score=126.70  Aligned_cols=149  Identities=19%  Similarity=0.159  Sum_probs=106.4

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+++.++...+.++++ ..+.+.-..+.      +.++++|+.|++++|+++.++.      ..|..+++|
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L  138 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN------GAFVYLSKL  138 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT------TTSCSCSSC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH------hHhhccccC
Confidence            4566888888888888777766655 11222222111      2667777777777777777765      667777778


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      +.|++++|+++.+++..|..+++|+.|++++| .+..+++ ..+.++++|+.|++++|.++.++.     +..+++|+.|
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L  212 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDEL  212 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEE
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEE
Confidence            88888888777777766777778888888773 4555554 567788888888888888888876     6778888888


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|.+.+
T Consensus       213 ~Ls~N~l~~  221 (440)
T 3zyj_A          213 DLSGNHLSA  221 (440)
T ss_dssp             ECTTSCCCE
T ss_pred             ECCCCccCc
Confidence            888887643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=2.1e-15  Score=113.50  Aligned_cols=129  Identities=18%  Similarity=0.169  Sum_probs=112.1

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      ..++++.+.++.++....   ++                 ++.|++++|.++.++.      ..|..+++|+.|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~~---~~-----------------l~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~   63 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIP---AQ-----------------TTYLDLETNSLKSLPN------GVFDELTSLTQLYLGGNK   63 (208)
T ss_dssp             TEEECCSSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSC
T ss_pred             CEEEecCCCccCCCCCCC---CC-----------------CcEEEcCCCccCcCCh------hhhcccccCcEEECCCCc
Confidence            457788888877775432   34                 9999999999999886      778899999999999999


Q ss_pred             CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      ++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+..++.   ..+..+++|+.|++++|.+.+
T Consensus        64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSC
T ss_pred             cCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCH---hHhccCCcCCEEECCCCccce
Confidence            999998878899999999999999999885 678899999999999999999877   357889999999999997653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3.8e-15  Score=110.98  Aligned_cols=113  Identities=24%  Similarity=0.258  Sum_probs=102.8

Q ss_pred             CCcceeCCCCCccccchh-hhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          13 FKIPLDLSFQQIQSLDKV-AVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~-~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      ....|++++|+++.+++. .+.++++                 |+.|++++|.++.+.+      ..|..+++|+.|+++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~-----------------L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPH-----------------LVKLELKRNQLTGIEP------NAFEGASHIQELQLG   86 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTT-----------------CCEEECCSSCCCCBCT------TTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCCccccccCCC-----------------CCEEECCCCCCCCcCH------hHcCCcccCCEEECC
Confidence            567799999999999875 4666777                 9999999999999976      889999999999999


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      +|+++.+++..+..+++|+.|++++|+++...+ ..+..+++|+.|++++|++.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999999889999999999999999999876 788999999999999999998765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=5.5e-15  Score=108.51  Aligned_cols=113  Identities=24%  Similarity=0.265  Sum_probs=102.4

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....|++++|+++.++...+.++++                 |+.|++++|.++.+++      ..|..+++|+.|++++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQ-----------------LTKLSLSQNQIQSLPD------GVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCcccEeCHHHhcCccc-----------------ccEEECCCCcceEeCh------hHccCCCccCEEECCC
Confidence            5677999999999998877776777                 9999999999999886      7788999999999999


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      |+++.+++..+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence            99999998878899999999999999999886 677889999999999999998754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=7.3e-16  Score=118.47  Aligned_cols=146  Identities=12%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCC-cccccC----CCCCC---CCCCCCccEEEccC-CccccccCCchhhhhccCC
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG----ESPPM---LVGRYDTRSLWLSH-NKISLVYGLDSLVHRTILD   81 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~----~~~~~---~~~l~~L~~L~ls~-n~l~~~~~l~~~~~~~~~~   81 (210)
                      |.....|++++|+++.++...+.++++ ..+.+.    +....   +.++++|+.|++++ |.++.+++      ..|..
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~------~~f~~  103 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP------DALKE  103 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT------TSEEC
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH------HHhCC
Confidence            345677999999999999877766666 111111    11111   14555566666665 66665554      45555


Q ss_pred             CCCCCEEECcCCCCCcCCcccccCCCCcc---EEEccCC-ccCccccccccccCCCcC-EEeeeCCCCCCccchHHHHHH
Q psy4162          82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLK---ILYLHKN-QIEEYLSVFVLRRVNSLR-TLSLYGNPIEKIREYRAVVST  156 (210)
Q Consensus        82 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~  156 (210)
                      +++|+.|++++|+++.++.  +..+.+|+   .|++++| .++.+++ ..+.++++|+ .|++++|.++.++.   ..+.
T Consensus       104 l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~---~~~~  177 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQG---YAFN  177 (239)
T ss_dssp             CTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECT---TTTT
T ss_pred             CCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCH---hhcC
Confidence            5666666666666655544  45555555   6666666 5655553 4455666666 66666666665554   1233


Q ss_pred             hCcCcccccCCCC
Q psy4162         157 MIPQLVTLDSVFI  169 (210)
Q Consensus       157 ~l~~L~~L~l~~~  169 (210)
                      . ++|+.|++++|
T Consensus       178 ~-~~L~~L~L~~n  189 (239)
T 2xwt_C          178 G-TKLDAVYLNKN  189 (239)
T ss_dssp             T-CEEEEEECTTC
T ss_pred             C-CCCCEEEcCCC
Confidence            3 55666666665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.61  E-value=1.9e-15  Score=124.13  Aligned_cols=127  Identities=16%  Similarity=0.265  Sum_probs=68.0

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCC---CC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      ...+++++|.++.++...+.++++ ..+.+.-..   ..   +..+++|+.|++++|.++.+++      ..|..+++|+
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~  120 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPLLT  120 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH------HHhcCCCCCC
Confidence            455899999999999887776666 111111111   11   1444555555555555555443      4445555555


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      .|++++|+++.+++..+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+..+
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence            55555555555554444455555555555555555443 4445555555555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=2.6e-15  Score=129.70  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=97.5

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCC-cccccCCCC---CC---CCCCCCccEEEccCCccccccCCchhhhhccCCCC
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD   83 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~   83 (210)
                      |.....|++++|.++.+++..+.++++ ..+.+.-..   ..   +.++++|+.|++++|.++.+++      ..|..++
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~  105 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE------TALSGPK  105 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT------TTTSSCT
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh------hhhcccc
Confidence            346678999999999998877776666 111111111   11   2566667777777777766655      5666677


Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc-
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV-  162 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~-  162 (210)
                      +|+.|++++|+++.+.+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+..++.   ..+..+++|+ 
T Consensus       106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~  181 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSK---EDMSSLQQATN  181 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECH---HHHHTTTTCCS
T ss_pred             cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccCh---hhhhhhcccce
Confidence            77777777777776655556667777777777777766542 334446777777777777776644   3566677776 


Q ss_pred             -cccCCCCCHH
Q psy4162         163 -TLDSVFILPS  172 (210)
Q Consensus       163 -~L~l~~~~~~  172 (210)
                       .|++++|.+.
T Consensus       182 l~L~l~~n~l~  192 (606)
T 3t6q_A          182 LSLNLNGNDIA  192 (606)
T ss_dssp             EEEECTTCCCC
T ss_pred             eEEecCCCccC
Confidence             6666666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=6.4e-15  Score=108.17  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....+++++|+++.++....   ++                 |+.|++++|+|+.+++      ..|..+++|+.|+|++
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~---~~-----------------L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~   66 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP---TD-----------------KQRLWLNNNQITKLEP------GVFDHLVNLQQLYFNS   66 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC---TT-----------------CSEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC---CC-----------------CcEEEeCCCCccccCH------HHhcCCcCCCEEECCC
Confidence            34569999999998887432   45                 9999999999999986      8899999999999999


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      |+++.+++..|..+++|+.|++++|.++.+++ ..+..+++|+.|++++|++.+.+.
T Consensus        67 N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           67 NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCCCccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            99999998878899999999999999999886 678899999999999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=2.1e-15  Score=132.00  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=96.5

Q ss_pred             CCCCCccEEEccCCccccccCCc--hhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLD--SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFV  127 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  127 (210)
                      .++.+|+.|++++|.++.++.-.  ......|..+++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++ ..
T Consensus       501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~  579 (680)
T 1ziw_A          501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SV  579 (680)
T ss_dssp             TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred             ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH-hH
Confidence            45666999999999998874310  0000237888999999999999999988878999999999999999999886 77


Q ss_pred             cccCCCcCEEeeeCCCCCCccchHHHHHH-hCcCcccccCCCCC
Q psy4162         128 LRRVNSLRTLSLYGNPIEKIREYRAVVST-MIPQLVTLDSVFIL  170 (210)
Q Consensus       128 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~L~~L~l~~~~  170 (210)
                      +.++++|+.|++++|.++.++.   ..+. .+++|+.|++++|+
T Consensus       580 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLITSVEK---KVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTTCTTCCEEECTTSCCCBCCH---HHHHHHHTTCSEEECTTCC
T ss_pred             hCCCCCCCEEECCCCcCCccCh---hHhcccccccCEEEccCCC
Confidence            8899999999999999998876   3555 78899999999986

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=3.9e-15  Score=124.26  Aligned_cols=149  Identities=21%  Similarity=0.210  Sum_probs=124.2

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCC---CCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|.++.++...|.++++ ..+.+.-   ....   +..+++|+.|++++|.++.++.      ..|..+++|
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L  162 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS------YAFNRIPSL  162 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT------TTTTTCTTC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH------HHhhhCccc
Confidence            3466999999999999888776666 2222222   2222   3778999999999999999987      889999999


Q ss_pred             CEEECcC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      +.|++++ +.+..+++..|..+++|+.|++++|.++.++.   +..+++|+.|++++|.++.++.   ..+..+++|+.|
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L  236 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRP---GSFQGLMHLQKL  236 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC---CTTCSSCCEEECTTSCCCEECT---TTTTTCTTCCEE
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc---cCCCcccCEEECCCCccCccCh---hhhccCccCCEE
Confidence            9999998 57888888789999999999999999998874   7789999999999999998865   378999999999


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|.+..
T Consensus       237 ~L~~n~l~~  245 (440)
T 3zyj_A          237 WMIQSQIQV  245 (440)
T ss_dssp             ECTTCCCCE
T ss_pred             ECCCCceeE
Confidence            999997654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=3.5e-15  Score=128.35  Aligned_cols=124  Identities=23%  Similarity=0.289  Sum_probs=102.2

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|.|+.++.  +.++++                 |+.|++++|.++.+|       ..+..+++|+.|++++|
T Consensus       443 L~~L~Ls~n~l~~lp~--~~~l~~-----------------L~~L~Ls~N~l~~lp-------~~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH--LEQLLL-----------------VTHLDLSHNRLRALP-------PALAALRCLEVLQASDN  496 (567)
T ss_dssp             CSEEECTTSCCSSCCC--GGGGTT-----------------CCEEECCSSCCCCCC-------GGGGGCTTCCEEECCSS
T ss_pred             ceEEEecCCCCCCCcC--cccccc-----------------CcEeecCcccccccc-------hhhhcCCCCCEEECCCC
Confidence            3568888888888876  555667                 999999999999776       67888899999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                      ++++++  .+..+++|+.|++++|.++++. + ..++.+++|+.|++++|++++.++.....+..+++|+.|++
T Consensus       497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          497 ALENVD--GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCCCG--GGTTCSSCCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCc--ccCCCCCCcEEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999876  3888999999999999998884 4 67888999999999999998887665556777888888864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=2.3e-15  Score=122.04  Aligned_cols=152  Identities=15%  Similarity=0.084  Sum_probs=113.1

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+++.++...+.++++ ..+.+.-..+.      +.++++|+.|++++|.++.++.      ..|..+++|
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L  126 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS------SWFKPLSSL  126 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH------HHHTTCTTC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH------hHhCCCccC
Confidence            4566899999998888766665555 11222211111      2667888888888888888774      557888888


Q ss_pred             CEEECcCCCCCcCCc-ccccCCCCccEEEccCC-ccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          86 GWIDLSFNNIKNVDK-NMFTNFPNLKILYLHKN-QIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      +.|++++|+++.++. ..+..+++|+.|++++| .+...++ ..+..+++|+.|++++|.+.+...   ..+..+++|+.
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~  202 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEP---KSLKSIQNVSH  202 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT---TTTTTCSEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCH---HHHhccccCCe
Confidence            888888888888876 55778888888888888 4666654 667888889999999998887644   26888899999


Q ss_pred             ccCCCCCHHHH
Q psy4162         164 LDSVFILPSEK  174 (210)
Q Consensus       164 L~l~~~~~~~~  174 (210)
                      |++++|.....
T Consensus       203 L~l~~n~l~~~  213 (353)
T 2z80_A          203 LILHMKQHILL  213 (353)
T ss_dssp             EEEECSCSTTH
T ss_pred             ecCCCCccccc
Confidence            99998886443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.59  E-value=5.6e-15  Score=124.29  Aligned_cols=149  Identities=18%  Similarity=0.157  Sum_probs=124.4

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|.++.+.+..+.++++ ..+.+.   +...+   +.++++|+.|++++|.+..+.+      ..|..+++|
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------~~~~~l~~L  130 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD------YMFQDLYNL  130 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT------TTTTTCTTC
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh------hHccccccC
Confidence            3566999999999998877776655 122222   22222   2778999999999999999876      789999999


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLD  165 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~  165 (210)
                      +.|++++|.+..+.+..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..++.   ..+..+++|+.|+
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~  206 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLE  206 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEE
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceee
Confidence            999999999999988889999999999999999999885 778999999999999999998876   3688899999999


Q ss_pred             CCCCCH
Q psy4162         166 SVFILP  171 (210)
Q Consensus       166 l~~~~~  171 (210)
                      +++|..
T Consensus       207 l~~~~~  212 (477)
T 2id5_A          207 ISHWPY  212 (477)
T ss_dssp             EECCTT
T ss_pred             CCCCcc
Confidence            988754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.59  E-value=6e-15  Score=115.63  Aligned_cols=111  Identities=23%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....|++++|.++.++...+.++++                 |+.|++++|.++.+++      ..|..+++|+.|++++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSH-----------------LSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECTT
T ss_pred             CCcEEECCCCcCCccCHHHccCCcC-----------------CCEEECCCCccCccCh------hhhcCCccccEEECCC
Confidence            3566999999999998877776666                 5555555555555543      4445555555555555


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCc
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      |++..+.+..+..+++|+.|++++|.++... + ..+..+++|+.|++++|.+..+
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEECCCCCCCcC
Confidence            5555544433445555555555555554422 1 3444555555555555555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.58  E-value=3.1e-15  Score=118.91  Aligned_cols=152  Identities=15%  Similarity=0.177  Sum_probs=118.6

Q ss_pred             CCcceeCCCCCccccch-hhhcccCC-cccccCCCCC---C---CCCCCCccEEEccCCcccc-ccCCchhhhhccCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDK-VAVQKLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPD   83 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~-~~~~~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~   83 (210)
                      ....|++++|+++.++. ..+.++++ ..+.+.....   .   ...+++|+.|++++|.++. ..+      ..+..++
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~  175 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------DIFTELR  175 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------SCCTTCT
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch------hHHhhCc
Confidence            34668999999988876 34444444 1111221111   1   2678889999999999987 333      7788899


Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCc-Ccc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP-QLV  162 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~  162 (210)
                      +|+.|++++|+++.+.+..+..+++|+.|++++|.++..+. ..+..+++|+.|++++|++.+...   ..+..++ +|+
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~  251 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK---QELQHFPSSLA  251 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSS---SSCCCCCTTCC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCH---HHHHhhhccCC
Confidence            99999999999999987778999999999999999999875 678899999999999999997654   2567774 899


Q ss_pred             cccCCCCCHHHH
Q psy4162         163 TLDSVFILPSEK  174 (210)
Q Consensus       163 ~L~l~~~~~~~~  174 (210)
                      .|++++|+....
T Consensus       252 ~L~L~~N~~~~~  263 (306)
T 2z66_A          252 FLNLTQNDFACT  263 (306)
T ss_dssp             EEECTTCCEECS
T ss_pred             EEEccCCCeecc
Confidence            999999987543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.58  E-value=4.8e-15  Score=124.06  Aligned_cols=149  Identities=21%  Similarity=0.189  Sum_probs=124.0

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+++.+++..+.++++ ..+.+.-.   ...   +..+++|+.|++++|+++.++.      ..|..+++|
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L  173 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS------YAFNRVPSL  173 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT------TTTTTCTTC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH------hHHhcCCcc
Confidence            3566999999999998877776665 22222222   222   2679999999999999999987      889999999


Q ss_pred             CEEECcC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      +.|++++ |.+..++...+..+++|+.|++++|.++.++.   +..+++|+.|++++|.+.+++.   ..+..+++|+.|
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L  247 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRP---GSFHGLSSLKKL  247 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC---CTTCTTCCEEECTTSCCSEECG---GGGTTCTTCCEE
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc---ccccccccEEECcCCcCcccCc---ccccCccCCCEE
Confidence            9999998 57888888889999999999999999998864   7789999999999999998865   478999999999


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|.+..
T Consensus       248 ~L~~n~l~~  256 (452)
T 3zyi_A          248 WVMNSQVSL  256 (452)
T ss_dssp             ECTTSCCCE
T ss_pred             EeCCCcCce
Confidence            999997643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=4.6e-15  Score=128.39  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...+++++|.++.+++..+.++++                 |+.|++++|.++.+++      ..|..+++|+.|++++|
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n  109 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQ-----------------VELLNLNDLQIEEIDT------YAFAYAHTIQKLYMGFN  109 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCC-----------------CSEEECTTSCCCEECT------TTTTTCTTCCEEECCSS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCC-----------------CcEEECCCCCCCCCCh------HHhcCCCCCCEEECCCC
Confidence            355888899999998887776666                 5555555555544443      34444445555555555


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      .++.+++..++.+++|+.|++++|.++.+++ ..++.+++|+.|++++|.+.++++   ..+..+++|+.|++++|.
T Consensus       110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED---DTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECTTSC
T ss_pred             cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCCh---hhhhcCCcCcEEECcCCC
Confidence            5544444444444455555555555444443 334444455555555554444433   134444444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=7.3e-15  Score=128.56  Aligned_cols=151  Identities=19%  Similarity=0.129  Sum_probs=120.1

Q ss_pred             CCCcceeCCCCCccccchhhhcccCC-cccccCC---CCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      .....|++++|.++.+++..+.++++ ..+.+..   ....   ++.+++|+.|++++|.++.++.      ..|..+++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD------KTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh------hhhccCCC
Confidence            35677999999999999877776655 1122221   2221   2678889999999999998886      67889999


Q ss_pred             CCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHH--hCcCcc
Q psy4162          85 IGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST--MIPQLV  162 (210)
Q Consensus        85 L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~l~~L~  162 (210)
                      |++|++++|+++.+++..+..+++|+.|++++|.++..++ ..+.++++|+.|++++|.+++++.   ..+.  .+++|+
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~L~  174 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKS---EELDIFANSSLK  174 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCH---HHHGGGTTCEES
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCH---HHhhcccccccc
Confidence            9999999999999887778899999999999999988775 778889999999999999998866   3443  458899


Q ss_pred             cccCCCCCHH
Q psy4162         163 TLDSVFILPS  172 (210)
Q Consensus       163 ~L~l~~~~~~  172 (210)
                      .|++++|.+.
T Consensus       175 ~L~L~~n~l~  184 (680)
T 1ziw_A          175 KLELSSNQIK  184 (680)
T ss_dssp             EEECTTCCCC
T ss_pred             EEECCCCccc
Confidence            9999888654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=4.9e-15  Score=117.74  Aligned_cols=150  Identities=17%  Similarity=0.178  Sum_probs=117.7

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCC---CCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDL   84 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~   84 (210)
                      ....|++++|.++.++.. +.++++ ..+.+..   ...   . ...+++|+.|++++|.+....+      ..+..+++
T Consensus        79 ~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~  151 (306)
T 2z66_A           79 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIFNGLSS  151 (306)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST------TTTTTCTT
T ss_pred             ccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch------hhcccCcC
Confidence            356799999999987764 333333 1111111   111   2 3678899999999999988776      77888999


Q ss_pred             CCEEECcCCCCCc-CCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          85 IGWIDLSFNNIKN-VDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        85 L~~L~Ls~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      |+.|++++|.++. ..+..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.+.+++.   ..+..+++|+.
T Consensus       152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~  227 (306)
T 2z66_A          152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDT---FPYKCLNSLQV  227 (306)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCS---GGGTTCTTCCE
T ss_pred             CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccCh---hhccCcccCCE
Confidence            9999999999986 344458889999999999999999875 778899999999999999998876   35788999999


Q ss_pred             ccCCCCCHHH
Q psy4162         164 LDSVFILPSE  173 (210)
Q Consensus       164 L~l~~~~~~~  173 (210)
                      |++++|.+..
T Consensus       228 L~L~~N~l~~  237 (306)
T 2z66_A          228 LDYSLNHIMT  237 (306)
T ss_dssp             EECTTSCCCB
T ss_pred             eECCCCCCcc
Confidence            9999997654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=2.7e-14  Score=111.48  Aligned_cols=137  Identities=20%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|+++.++.  +..+++ ..+.+.-..+.    ...+++|+.|++++|+++.+++        +.. ++|+.|
T Consensus        43 L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~--------~~~-~~L~~L  111 (263)
T 1xeu_A           43 VQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--------IPS-ACLSRL  111 (263)
T ss_dssp             CSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTT--------CCC-SSCCEE
T ss_pred             CcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCc--------ccc-CcccEE
Confidence            3458888888887773  333444 11111111111    2455566666666666666543        111 566666


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++.++.  +..+++|+.|++++|++++++   .+..+++|+.|++++|.++++.     .+..+++|+.|++++
T Consensus       112 ~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          112 FLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVNWIDLTG  181 (263)
T ss_dssp             ECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCCEEEEEE
T ss_pred             EccCCccCCChh--hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCCEEeCCC
Confidence            666666666543  566666666666666666654   2556666667777776666662     356666666666666


Q ss_pred             CCH
Q psy4162         169 ILP  171 (210)
Q Consensus       169 ~~~  171 (210)
                      |++
T Consensus       182 N~~  184 (263)
T 1xeu_A          182 QKC  184 (263)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.55  E-value=2.6e-14  Score=119.32  Aligned_cols=136  Identities=21%  Similarity=0.290  Sum_probs=75.4

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccc-cccCCchhhhhccCCCCCCCEEE
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKIS-LVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      |.....|++++|.++.+.+..+.++++                 |+.|++++|.+. .+++      ..|..+++|+.|+
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~-----------------L~~L~L~~n~~~~~i~~------~~~~~l~~L~~L~   85 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQD-----------------LQFLKVEQQTPGLVIRN------NTFRGLSSLIILK   85 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTT-----------------CCEEECCCCSTTCEECT------TTTTTCTTCCEEE
T ss_pred             CCccCEEEecCCccCcCChhHhccCcc-----------------ccEEECcCCcccceECc------ccccccccCCEEe
Confidence            345667888888888887776666666                 555555555554 3333      4455555555555


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +++|+++.+.+..+..+++|+.|++++|.+++.. ....+..+++|+.|++++|.+..+.+.  ..+..+++|+.|++++
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA--SFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC--GGGGGCTTCCEEECTT
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc--cccCCCCcccEEeCCC
Confidence            5555555554444555555555555555555421 112245555555555555555544220  1245555555555555


Q ss_pred             CCH
Q psy4162         169 ILP  171 (210)
Q Consensus       169 ~~~  171 (210)
                      |.+
T Consensus       164 n~l  166 (455)
T 3v47_A          164 NKV  166 (455)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=3.9e-14  Score=116.24  Aligned_cols=123  Identities=19%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      ...|++++|.++.+++..+.++++ ..+.+.   +....   +..+++|+.|++++|.++.++.      ..|..+++|+
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~  144 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR------GIFHNTPKLT  144 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH------HHhcCCCCCc
Confidence            455788888887777665554444 111111   11221   2667778888888888887775      5567778888


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK  146 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  146 (210)
                      .|++++|+++.+++..+..+++|+.|++++|.++..+    +..+++|+.+++++|.+..
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSE
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccccccc
Confidence            8888888888777766777788888888888777664    3345555555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.55  E-value=8.2e-15  Score=125.10  Aligned_cols=149  Identities=18%  Similarity=0.165  Sum_probs=87.1

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCC---C---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+++.+++..+.++++ ..+.+....+   .   +.++++|+.|++++|.++++++      ..|..+++|
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L  100 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS------SWFGPLSSL  100 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH------HHHTTCTTC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH------HHhccCCCC
Confidence            4567899999988887766666655 1111111111   1   2555666666666666666553      446666666


Q ss_pred             CEEECcCCCCCcCC-cccccCCCCccEEEccCCc-cCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          86 GWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      +.|++++|+++.+. +..+..+++|+.|++++|. +..+++ ..+.++++|+.|++++|.+.+...   ..+..+++|+.
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~  176 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQS---QSLKSIRDIHH  176 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT---TTTTTCSEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccccCh---hhhhccccCce
Confidence            66666666665432 2235566666666666665 444442 455666666666666666665332   24666667777


Q ss_pred             ccCCCCCH
Q psy4162         164 LDSVFILP  171 (210)
Q Consensus       164 L~l~~~~~  171 (210)
                      |++..+..
T Consensus       177 L~l~~n~~  184 (549)
T 2z81_A          177 LTLHLSES  184 (549)
T ss_dssp             EEEECSBS
T ss_pred             EecccCcc
Confidence            77666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=1.5e-14  Score=115.73  Aligned_cols=109  Identities=21%  Similarity=0.146  Sum_probs=92.7

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhcc-CCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTI-LDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL  128 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  128 (210)
                      ..+++|+.|++++|.++.++.      ..+ ..+++|+.|++++|+++.++.  ...+++|+.|++++|.++.+++  .+
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~--~~  210 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP--EF  210 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG--GG
T ss_pred             hccCCCCEEECCCCCCCcccH------HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh--hh
Confidence            446679999999999998764      444 467899999999999998865  3458899999999999999874  38


Q ss_pred             ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      ..+++|+.|++++|.++.++.    .+..+++|+.|++++|+..
T Consensus       211 ~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCCB
T ss_pred             cccCcccEEECcCCcccchhh----HhhcCCCCCEEEccCCCcc
Confidence            889999999999999998887    5788999999999999886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.54  E-value=7.9e-15  Score=118.91  Aligned_cols=152  Identities=11%  Similarity=0.049  Sum_probs=122.4

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCC---CCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|+++.+.+..+.++++ ..+.+...   ...   +..+++|+.|++++|+++.++..     ..+..+++|
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~~l~~L  151 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-----SLFSHLTKL  151 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS-----CSCTTCTTC
T ss_pred             CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch-----hhhccCCCC
Confidence            3566999999999988776665555 22222222   222   27889999999999999987630     267888999


Q ss_pred             CEEECcCC-CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      +.|++++| .+..+++..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+..++.   ..+..+++|+.|
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L  227 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLE---IFVDVTSSVECL  227 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHH---HHHHHTTTEEEE
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchh---hhhhhcccccEE
Confidence            99999999 5888887778999999999999999998865 778999999999999999988876   457779999999


Q ss_pred             cCCCCCHHH
Q psy4162         165 DSVFILPSE  173 (210)
Q Consensus       165 ~l~~~~~~~  173 (210)
                      ++++|.+..
T Consensus       228 ~L~~n~l~~  236 (353)
T 2z80_A          228 ELRDTDLDT  236 (353)
T ss_dssp             EEESCBCTT
T ss_pred             ECCCCcccc
Confidence            999997654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=5.5e-14  Score=121.60  Aligned_cols=110  Identities=22%  Similarity=0.325  Sum_probs=77.4

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|.++.+++..+.++++                 |+.|++++|.++.+++      ..|..+++|+.|++++|
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n  133 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHT-----------------IQKLYMGFNAIRYLPP------HVFQNVPLLTVLVLERN  133 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTT-----------------CCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCC-----------------CCEEECCCCcCCCCCH------HHHcCCCCCCEEEeeCC
Confidence            567999999999998877776666                 6777777776666665      55666666777777777


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      .++.+++..|..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+..+
T Consensus       134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCc
Confidence            6666666655666667777777766666654 5566666666677666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.53  E-value=6.2e-14  Score=110.97  Aligned_cols=81  Identities=22%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcC
Q psy4162          81 DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQ  160 (210)
Q Consensus        81 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  160 (210)
                      .+++|+.|++++|+++.+.  .+..+++|+.|++++|.++..++   +..+++|+.|++++|.+++++.     +..+++
T Consensus       132 ~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~  201 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKN  201 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTT
T ss_pred             CCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh-----hccCCC
Confidence            3445555555555555442  14445555555555555555442   4455555555555555555432     445555


Q ss_pred             cccccCCCCCH
Q psy4162         161 LVTLDSVFILP  171 (210)
Q Consensus       161 L~~L~l~~~~~  171 (210)
                      |+.|++++|++
T Consensus       202 L~~L~l~~n~i  212 (291)
T 1h6t_A          202 LDVLELFSQEC  212 (291)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCEEECcCCcc
Confidence            55555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.53  E-value=6.1e-14  Score=113.15  Aligned_cols=141  Identities=21%  Similarity=0.241  Sum_probs=83.8

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...+++++|.++.++.  +..+++ ..+.+.-....    ...+++|+.|++++|.++.++        .+..+++|+.|
T Consensus       201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L  270 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN--------AVKDLTKLKML  270 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------GGTTCTTCCEE
T ss_pred             cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh--------hHhcCCCcCEE
Confidence            4558888888887776  333344 11111111111    145555677777776666642        34555667777


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++.++.  +..+++|+.|++++|.++...+ ..+..+++|+.|++++|+++++++     +..+++|+.|++++
T Consensus       271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          271 NVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFAN  342 (347)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSC
T ss_pred             EccCCccCCChh--hcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC-----hhhhhccceeehhh
Confidence            777777666632  5666677777777777666554 556667777777777777766654     56667777777777


Q ss_pred             CCHH
Q psy4162         169 ILPS  172 (210)
Q Consensus       169 ~~~~  172 (210)
                      |++.
T Consensus       343 N~i~  346 (347)
T 4fmz_A          343 QVIK  346 (347)
T ss_dssp             C---
T ss_pred             hccc
Confidence            6653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.52  E-value=6.5e-14  Score=112.44  Aligned_cols=128  Identities=21%  Similarity=0.206  Sum_probs=63.1

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|+++.++...+.++++                 |+.|++++|.++.+.+      ..|..+++|+.|++++|
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKN-----------------LHTLILINNKISKISP------GAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTT-----------------CCEEECCSSCCCCBCT------TTTTTCTTCCEEECCSS
T ss_pred             CeEEECCCCcCCEeChhhhccCCC-----------------CCEEECCCCcCCeeCH------HHhcCCCCCCEEECCCC
Confidence            445777777777766655554444                 5555555555544433      44444445555555555


Q ss_pred             CCCc---------------------CCcccccCCCCccEEEccCCccCc--cccccccccCCCcCEEeeeCCCCCCccch
Q psy4162          94 NIKN---------------------VDKNMFTNFPNLKILYLHKNQIEE--YLSVFVLRRVNSLRTLSLYGNPIEKIREY  150 (210)
Q Consensus        94 ~i~~---------------------~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  150 (210)
                      +++.                     +++..+..+++|+.|++++|.+..  ..+ ..+..+++|+.|++++|.+..++. 
T Consensus       111 ~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~-  188 (330)
T 1xku_A          111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQ-  188 (330)
T ss_dssp             CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCS-
T ss_pred             cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCc-
Confidence            4444                     444334444455555555554432  111 334445555555555555554443 


Q ss_pred             HHHHHHhCcCcccccCCCCCH
Q psy4162         151 RAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus       151 ~~~~l~~l~~L~~L~l~~~~~  171 (210)
                         .+  .++|+.|++++|.+
T Consensus       189 ---~~--~~~L~~L~l~~n~l  204 (330)
T 1xku_A          189 ---GL--PPSLTELHLDGNKI  204 (330)
T ss_dssp             ---SC--CTTCSEEECTTSCC
T ss_pred             ---cc--cccCCEEECCCCcC
Confidence               11  14455555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.52  E-value=7.4e-15  Score=112.82  Aligned_cols=147  Identities=13%  Similarity=0.062  Sum_probs=117.7

Q ss_pred             CCcceeCCCCC-ccccchhhhcccCC-ccccc----CCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCC
Q psy4162          13 FKIPLDLSFQQ-IQSLDKVAVQKLKP-NVHRL----GESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD   83 (210)
Q Consensus        13 ~~~~L~ls~n~-l~~l~~~~~~~l~~-~~~~~----~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~   83 (210)
                      ....|++++|+ ++.+++..+.++++ ..+.+    .+....   +.++++|+.|++++|.++.++.        |..++
T Consensus        56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--------~~~l~  127 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--------LTKVY  127 (239)
T ss_dssp             TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--------CTTCC
T ss_pred             CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--------ccccc
Confidence            34669999997 99999877766655 22222    222222   2688999999999999999763        56667


Q ss_pred             CCC---EEECcCC-CCCcCCcccccCCCCcc-EEEccCCccCccccccccccCCCcCEEeeeCCC-CCCccchHHHHHHh
Q psy4162          84 LIG---WIDLSFN-NIKNVDKNMFTNFPNLK-ILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP-IEKIREYRAVVSTM  157 (210)
Q Consensus        84 ~L~---~L~Ls~n-~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  157 (210)
                      +|+   .|++++| +++.+++..|..+++|+ .|++++|.++.++. ..+.. ++|+.|++++|+ ++.++.   ..+..
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~---~~~~~  202 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVIDK---DAFGG  202 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEECT---TTTTT
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCCH---HHhhc
Confidence            777   9999999 99999988899999999 99999999998875 55666 899999999995 998876   36888


Q ss_pred             C-cCcccccCCCCCHH
Q psy4162         158 I-PQLVTLDSVFILPS  172 (210)
Q Consensus       158 l-~~L~~L~l~~~~~~  172 (210)
                      + ++|+.|++++|.+.
T Consensus       203 l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          203 VYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CSBCCSEEECTTCCCC
T ss_pred             cccCCcEEECCCCccc
Confidence            8 99999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=3.5e-14  Score=103.72  Aligned_cols=105  Identities=20%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL  134 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L  134 (210)
                      .+.+++++|.++.+|.      . +  .+.|+.|++++|+++.+++..|..+++|+.|++++|+++.+++ ..+..+++|
T Consensus        11 ~~~l~~s~n~l~~ip~------~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L   80 (170)
T 3g39_A           11 GTTVDCSGKSLASVPT------G-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQL   80 (170)
T ss_dssp             TTEEECTTSCCSSCCS------C-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCEEEeCCCCcCccCc------c-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCC
Confidence            6889999999999884      2 2  2789999999999999988889999999999999999999986 778999999


Q ss_pred             CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +.|++++|.++.++.   ..+..+++|+.|++++|+..
T Consensus        81 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           81 TQLSLNDNQLKSIPR---GAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECCCCccCEeCH---HHhcCCCCCCEEEeCCCCCC
Confidence            999999999999887   46889999999999999764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.52  E-value=4.4e-14  Score=122.03  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=120.4

Q ss_pred             CCcceeCCCCCccccch-hhhcccCC-cccccCCCCC----C--CCCCCCccEEEccCCcccc-ccCCchhhhhccCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDK-VAVQKLKP-NVHRLGESPP----M--LVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPD   83 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~-~~~~~l~~-~~~~~~~~~~----~--~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~   83 (210)
                      ....|++++|.++.+.+ ..+.++++ ..+.+.....    +  ...+++|+.|++++|.+++ ..+      ..+..++
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~  473 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------NVFANTT  473 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------SCCTTCT
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH------HhhccCC
Confidence            34568999999988766 34444444 1111221111    1  2678889999999999987 344      7788999


Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCc-Ccc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP-QLV  162 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~  162 (210)
                      +|+.|++++|+++.+.+..+..+++|+.|++++|+++...+ ..+..+++|+.|++++|.++.+|.    .+..++ +|+
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~----~~~~l~~~L~  548 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKG----ILQHFPKSLA  548 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEES----CGGGSCTTCC
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCH----hHhhhcccCc
Confidence            99999999999999988889999999999999999999875 788999999999999999999988    488887 599


Q ss_pred             cccCCCCCHHH
Q psy4162         163 TLDSVFILPSE  173 (210)
Q Consensus       163 ~L~l~~~~~~~  173 (210)
                      .|++++|+...
T Consensus       549 ~l~l~~N~~~c  559 (606)
T 3vq2_A          549 FFNLTNNSVAC  559 (606)
T ss_dssp             EEECCSCCCCC
T ss_pred             EEEccCCCccc
Confidence            99999998654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.52  E-value=3.4e-14  Score=110.90  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|+++.+++  +.++++ ..+.+.-..+.    ... .+|+.|++++|.++.++        .+..+++|+.|
T Consensus        65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L  133 (263)
T 1xeu_A           65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD--------SLIHLKNLEIL  133 (263)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG--------GGTTCTTCCEE
T ss_pred             CCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh--------hhcCcccccEE
Confidence            3456677777666665  333333 11111111111    122 56677777777666653        24556667777


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                      ++++|+++.++.  +..+++|+.|++++|.++...   .+..+++|+.|++++|++...+
T Consensus       134 ~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~~---~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          134 SIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             ECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBCT---TSTTCCCCCEEEEEEEEEECCC
T ss_pred             ECCCCcCCCChH--HccCCCCCEEECCCCcCcchH---HhccCCCCCEEeCCCCcccCCc
Confidence            777777666642  566667777777777666652   3556666777777777666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=1e-13  Score=110.50  Aligned_cols=141  Identities=23%  Similarity=0.300  Sum_probs=93.3

Q ss_pred             cceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      ..|++++|.++.++.  +.++++ ..+.+....+   . ...+++|+.|++++|.++.++        .+..+++|+.|+
T Consensus        66 ~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~  135 (308)
T 1h6u_A           66 IGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--------PLAGLSNLQVLY  135 (308)
T ss_dssp             CEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG--------GGTTCTTCCEEE
T ss_pred             CEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch--------hhcCCCCCCEEE
Confidence            446666666666665  333333 1111111111   1 255666666666666666653        256667788888


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      +++|+++.+++  +..+++|+.|++++|.++.+++   +..+++|+.|++++|.+++++.     +..+++|+.|++++|
T Consensus       136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTS
T ss_pred             CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEEccCC
Confidence            88887777765  6677788888888888877653   6778888888888888887765     677888888888888


Q ss_pred             CHHHHH
Q psy4162         170 LPSEKQ  175 (210)
Q Consensus       170 ~~~~~~  175 (210)
                      .+.+..
T Consensus       206 ~l~~~~  211 (308)
T 1h6u_A          206 QISDVS  211 (308)
T ss_dssp             CCCBCG
T ss_pred             ccCccc
Confidence            765433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.51  E-value=2.9e-14  Score=114.73  Aligned_cols=144  Identities=15%  Similarity=0.145  Sum_probs=83.1

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccc---cCCCCCC--CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHR---LGESPPM--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW   87 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~---~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~   87 (210)
                      .+.|++++|+++.++.... ++++ ..+.   ..+..++  ...+++|+.|++++|.++.++       ..+..+++|+.
T Consensus        83 l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~  154 (328)
T 4fcg_A           83 RVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP-------ASIASLNRLRE  154 (328)
T ss_dssp             CCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCC-------GGGGGCTTCCE
T ss_pred             eeEEEccCCCchhcChhhh-hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCc-------HHHhcCcCCCE
Confidence            4568888888887776432 2333 1111   1122222  266777888888888888665       45566666666


Q ss_pred             EECcCCCCCcCCccccc---------CCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162          88 IDLSFNNIKNVDKNMFT---------NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI  158 (210)
Q Consensus        88 L~Ls~n~i~~~~~~~~~---------~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l  158 (210)
                      |++++|++.+..+..+.         .+++|+.|++++|.++.++  ..+..+++|+.|++++|.+.+++.    .+..+
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l  228 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP--ASIANLQNLKSLKIRNSPLSALGP----AIHHL  228 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC--GGGGGCTTCCEEEEESSCCCCCCG----GGGGC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch--HhhcCCCCCCEEEccCCCCCcCch----hhccC
Confidence            66666543332222122         3666666666666666554  335666666666666666666555    35566


Q ss_pred             cCcccccCCCCCH
Q psy4162         159 PQLVTLDSVFILP  171 (210)
Q Consensus       159 ~~L~~L~l~~~~~  171 (210)
                      ++|+.|++++|..
T Consensus       229 ~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          229 PKLEELDLRGCTA  241 (328)
T ss_dssp             TTCCEEECTTCTT
T ss_pred             CCCCEEECcCCcc
Confidence            6666666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.51  E-value=8.6e-14  Score=120.18  Aligned_cols=146  Identities=19%  Similarity=0.131  Sum_probs=102.4

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIG   86 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~   86 (210)
                      ...|++++|+++.+.+..|.++++ ..+.+....+.      ++++++|+.|++++|.++.+++      ..+..+++|+
T Consensus        59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~------~~~~~l~~L~  132 (606)
T 3t6q_A           59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF------IPLHNQKTLE  132 (606)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG------SCCTTCTTCC
T ss_pred             ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc------chhccCCccc
Confidence            456888888888877766665555 22222222211      2677888888888888888755      6677788888


Q ss_pred             EEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcC--EEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          87 WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR--TLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        87 ~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      .|++++|++..+....+..+++|+.|++++|.++...+ ..++.+++|+  .+++++|.+.++++    ......+|+.|
T Consensus       133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~----~~~~~~~L~~L  207 (606)
T 3t6q_A          133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEP----GAFDSAVFQSL  207 (606)
T ss_dssp             EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HHHHTTTTCCSEEEECTTCCCCEECT----TTTTTCEEEEE
T ss_pred             EEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hhhhhhcccceeEEecCCCccCccCh----hHhhhcccccc
Confidence            88888888887653335557888888888888887764 6677777777  78888888887765    23444678888


Q ss_pred             cCCCCC
Q psy4162         165 DSVFIL  170 (210)
Q Consensus       165 ~l~~~~  170 (210)
                      ++.++.
T Consensus       208 ~l~~~~  213 (606)
T 3t6q_A          208 NFGGTQ  213 (606)
T ss_dssp             ECTTCS
T ss_pred             ccCCch
Confidence            888776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.51  E-value=7e-14  Score=112.24  Aligned_cols=146  Identities=20%  Similarity=0.115  Sum_probs=88.9

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCC------C--CCCCCCccEEEccCCccccccCCchhhhhccCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP------M--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPD   83 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~------~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~   83 (210)
                      ....|++++|.++.++...+.++++ ..+.+.....      .  ...+++|+.|++++|.++.++.      ..+   +
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------~~~---~  192 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLP---P  192 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS------SCC---T
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc------ccc---c
Confidence            4566999999999888876665554 1111211111      1  2556777777777777776653      111   4


Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      +|+.|++++|+++.+.+..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.+..++.    .+..+++|+.
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~  267 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQV  267 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCE
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCCh----hhccCCCcCE
Confidence            56666666666666655556666666666666666666553 455666666666666666666655    4556666666


Q ss_pred             ccCCCCCHH
Q psy4162         164 LDSVFILPS  172 (210)
Q Consensus       164 L~l~~~~~~  172 (210)
                      |++++|.+.
T Consensus       268 L~l~~N~i~  276 (330)
T 1xku_A          268 VYLHNNNIS  276 (330)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCcCC
Confidence            666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.51  E-value=5.1e-14  Score=113.18  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV  162 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~  162 (210)
                      ++|+.|++++|+++.+++..+..+++|+.|++++|.++..++ ..+..+++|+.|++++|.++.+|.    .+..+++|+
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~  267 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVPA----GLPDLKLLQ  267 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCCT----TGGGCTTCC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecCh----hhhcCccCC
Confidence            456666666666666665556667777777777777777664 556677777777777777776665    466777777


Q ss_pred             cccCCCCCHH
Q psy4162         163 TLDSVFILPS  172 (210)
Q Consensus       163 ~L~l~~~~~~  172 (210)
                      .|++++|.+.
T Consensus       268 ~L~l~~N~l~  277 (332)
T 2ft3_A          268 VVYLHTNNIT  277 (332)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            7777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=121.66  Aligned_cols=105  Identities=23%  Similarity=0.184  Sum_probs=66.3

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV  131 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l  131 (210)
                      +++|+.|++++|+++.+++      ..|..+++|++|++++|+++.++..   .+++|+.|++++|.++..+....++.+
T Consensus        44 l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l  114 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDI------SVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNM  114 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEG------GGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred             cccccEEecCCCccCCcCh------HHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccC
Confidence            3337777777777766654      5666677777777777777666553   566777777777776653211456667


Q ss_pred             CCcCEEeeeCCCCCCccchHHHHHHhCcCc--ccccCCCCCH
Q psy4162         132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQL--VTLDSVFILP  171 (210)
Q Consensus       132 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L--~~L~l~~~~~  171 (210)
                      ++|+.|++++|.+...      .+..+++|  +.|++++|..
T Consensus       115 ~~L~~L~L~~n~l~~~------~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          115 SQLKFLGLSTTHLEKS------SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             TTCCEEEEEESSCCGG------GGGGGTTSCEEEEEEEECTT
T ss_pred             CcceEEEecCcccchh------hccccccceeeEEEeecccc
Confidence            7777777777766552      24455555  6677666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.50  E-value=2.4e-14  Score=121.06  Aligned_cols=109  Identities=21%  Similarity=0.146  Sum_probs=94.1

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccC-CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTIL-DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL  128 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  128 (210)
                      ..+++|+.|++++|.+++.++      ..+. .+++|+.|++++|.++.+++  ...+++|+.|++++|.++++++  .+
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~------~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~--~~  210 (487)
T 3oja_A          141 GCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP--EF  210 (487)
T ss_dssp             GGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG--GG
T ss_pred             cCCCCCCEEECCCCCCCCcCh------HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH--hH
Confidence            556779999999999998764      5554 68899999999999999865  4468999999999999999874  38


Q ss_pred             ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      ..+++|+.|++++|.++++|.    .+..+++|+.|++++|+..
T Consensus       211 ~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCCCc
Confidence            889999999999999999887    5788899999999999876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.50  E-value=4.5e-14  Score=112.70  Aligned_cols=114  Identities=16%  Similarity=0.023  Sum_probs=53.3

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC---cccccCCCCccEEEccCCccCcccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD---KNMFTNFPNLKILYLHKNQIEEYLSVF  126 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~  126 (210)
                      +.+++|+.|++++|++.+..++.  ....+..+++|+.|++++|+++.++   ...+..+++|+.|++++|.+++..+..
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLI--SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHH--HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             ccCCCCCEEECCCCCcCcchHHH--HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            55666777777777654321000  0011244555555555555555321   222234455555555555555543223


Q ss_pred             ccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162         127 VLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus       127 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~  171 (210)
                      .+..+++|+.|++++|.++.+|.    .+.  ++|+.||+++|.+
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~~ip~----~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLKQVPK----GLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCSSCCS----SCC--SEEEEEECCSSCC
T ss_pred             hhhhcCCCCEEECCCCccChhhh----hcc--CCceEEECCCCCC
Confidence            33444555555555555554443    111  4455555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=7.1e-14  Score=102.54  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=94.3

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL  134 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L  134 (210)
                      -+.+++++|.++.+|.       .+.  +.|+.|++++|+++.+++..+..+++|+.|++++|+++.+++ ..+..+++|
T Consensus        14 ~~~l~~~~n~l~~iP~-------~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L   83 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPA-------GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQL   83 (174)
T ss_dssp             SSEEECCSSCCSSCCS-------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CcEEEeCCCCCCccCC-------CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchh
Confidence            4789999999999884       222  789999999999999988889999999999999999999986 778899999


Q ss_pred             CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +.|++++|.++.++.   ..+..+++|+.|++++|+..
T Consensus        84 ~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPR---GAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCBC
T ss_pred             hEEECCCCccceeCH---HHhccccCCCEEEeCCCCcc
Confidence            999999999999987   45889999999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.50  E-value=4.4e-14  Score=121.24  Aligned_cols=123  Identities=20%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             cceeCCCCCccccchhhhcccCCcccc-cCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEEC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHR-LGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDL   90 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~-~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~L   90 (210)
                      ..+++++|+++.+|.....++....+. ..+....   +.++++|+.|++++|.++.+++      ..|..+++|++|++
T Consensus        34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L  107 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------HVFLFNQDLEYLDV  107 (562)
T ss_dssp             CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------TTTTTCTTCCEEEC
T ss_pred             cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------HHhCCCCCCCEEEC
Confidence            569999999999887443211110000 0111111   1444445555555555555443      44445555555555


Q ss_pred             cCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC
Q psy4162          91 SFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK  146 (210)
Q Consensus        91 s~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  146 (210)
                      ++|+++.++..   .+++|+.|++++|.++.++....++++++|+.|++++|.+..
T Consensus       108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            55555544442   344555555555555443311334455555555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=1.6e-13  Score=108.64  Aligned_cols=140  Identities=25%  Similarity=0.274  Sum_probs=106.1

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|.++.++..  ..+++ ..+.+....+.    ...+++|+.|++++|.++.++        .+..+++|+.|
T Consensus        48 L~~L~l~~~~i~~~~~~--~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L  117 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS--------SLKDLKKLKSL  117 (291)
T ss_dssp             CCEEECTTSCCCCCTTG--GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG--------GGTTCTTCCEE
T ss_pred             ccEEEccCCCcccChhH--hcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh--------hhccCCCCCEE
Confidence            35688999999888653  23344 11112222222    367788888888888888764        36777899999


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++.++.  +..+++|+.|++++|.++.++   .+..+++|+.|++++|.+.+++.     +..+++|+.|++++
T Consensus       118 ~L~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          118 SLEHNGISDING--LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK  187 (291)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             ECCCCcCCCChh--hcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCC
Confidence            999999988743  778899999999999988874   37788999999999999998875     78889999999999


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+.+
T Consensus       188 N~i~~  192 (291)
T 1h6t_A          188 NHISD  192 (291)
T ss_dssp             SCCCB
T ss_pred             CcCCC
Confidence            98765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=2.1e-13  Score=108.69  Aligned_cols=141  Identities=23%  Similarity=0.222  Sum_probs=105.5

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|.++.++..  ..+++ ..+.+....+   . ...+++|+.|++++|.++.++        .+..+++|+.|
T Consensus        43 L~~L~l~~~~i~~l~~~--~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L  112 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEGV--QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--------AIAGLQSIKTL  112 (308)
T ss_dssp             CCEEECTTSCCCCCTTG--GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--------GGTTCTTCCEE
T ss_pred             cCEEEeeCCCccCchhh--hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--------hhcCCCCCCEE
Confidence            45699999999988753  33444 1112222222   2 377788888888888888764        36677888899


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++.+++  +..+++|+.|++++|.++..++   +..+++|+.|++++|.+++++.     +..+++|+.|++++
T Consensus       113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADD  182 (308)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCC
Confidence            999888888765  7888889999999998888764   7788889999999999888765     77888999999988


Q ss_pred             CCHHHH
Q psy4162         169 ILPSEK  174 (210)
Q Consensus       169 ~~~~~~  174 (210)
                      |.+.+.
T Consensus       183 n~l~~~  188 (308)
T 1h6u_A          183 NKISDI  188 (308)
T ss_dssp             SCCCCC
T ss_pred             CccCcC
Confidence            876543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=2.1e-16  Score=118.23  Aligned_cols=104  Identities=21%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL  134 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L  134 (210)
                      |+.|++++|.++.++.        +..+++|+.|++++|+++.++.. +..+++|+.|++++|.++.++   .+..+++|
T Consensus        50 L~~L~ls~n~l~~l~~--------~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~---~~~~l~~L  117 (198)
T 1ds9_A           50 CKHLALSTNNIEKISS--------LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS---GIEKLVNL  117 (198)
T ss_dssp             CSEEECSEEEESCCCC--------HHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH---HHHHHHHS
T ss_pred             CCEEECCCCCCccccc--------cccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC---ccccCCCC
Confidence            5555555555555431        22234555555555555544332 333445555555555555433   13444555


Q ss_pred             CEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         135 RTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       135 ~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +.|++++|.+..++..  ..+..+++|+.|++++|++.
T Consensus       118 ~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHH
T ss_pred             CEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccc
Confidence            5555555555544321  13444555555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.49  E-value=1.1e-13  Score=118.69  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=30.3

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC-cccccCCCCccEEEccCCccCc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQIEE  121 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~  121 (210)
                      .++++|+.|++++|.++.++.      .   .+++|+.|++++|+++.++ +..++.+++|+.|++++|.++.
T Consensus        97 ~~l~~L~~L~Ls~N~l~~lp~------~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B           97 LFNQDLEYLDVSHNRLQNISC------C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             TTCTTCCEEECTTSCCCEECS------C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCCCCEEECCCCcCCccCc------c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            344555555555555554442      1   3445555555555555433 2234445555555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=1e-13  Score=118.70  Aligned_cols=131  Identities=21%  Similarity=0.190  Sum_probs=99.1

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|+++.+++..+.++++                 |+.|++++|.++.+++      ..|..+++|+.|++++|
T Consensus        54 L~~L~Ls~n~i~~i~~~~~~~l~~-----------------L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           54 LQVLDLSRCEIQTIEDGAYQSLSH-----------------LSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTT-----------------CCEEECTTCCCCEECT------TTTTTCTTCCEEECTTS
T ss_pred             ceEEECCCCcCCccCcccccCchh-----------------CCEEeCcCCcCCccCH------hhhcCcccccccccccc
Confidence            466999999999998887776777                 8888888888888776      77888888888888888


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccc-cccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCc----ccccCCC
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYL-SVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL----VTLDSVF  168 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L----~~L~l~~  168 (210)
                      +++.+++..++.+.+|+.|++++|.++.+. + ..++++++|+.|++++|.+..++.   ..+..+++|    ..|++++
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYC---TDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCCEECG---GGGHHHHTCTTCCCEEECTT
T ss_pred             ccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccceecH---HHccchhccchhhhhcccCC
Confidence            888877755778888888888888887642 2 567778888888888888877654   234444444    5566666


Q ss_pred             CCH
Q psy4162         169 ILP  171 (210)
Q Consensus       169 ~~~  171 (210)
                      |.+
T Consensus       187 n~l  189 (570)
T 2z63_A          187 NPM  189 (570)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.48  E-value=1.6e-13  Score=110.34  Aligned_cols=85  Identities=24%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  130 (210)
                      .+++|+.|++++|.++.+.+      ..|..+++|+.|++++|+++.++...+   ++|+.|++++|.++.+++ ..+.+
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~-~~~~~  145 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHE------KAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPK-GVFSG  145 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECG------GGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCS-GGGSS
T ss_pred             CCCCCcEEECCCCccCccCH------hHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCH-hHhCC
Confidence            34446666666666666544      556666666666666666665555422   556666666666665553 44555


Q ss_pred             CCCcCEEeeeCCCCC
Q psy4162         131 VNSLRTLSLYGNPIE  145 (210)
Q Consensus       131 l~~L~~L~l~~n~l~  145 (210)
                      +++|+.|++++|.+.
T Consensus       146 l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          146 LRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CSSCCEEECCSCCCB
T ss_pred             CccCCEEECCCCccc
Confidence            666666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=8.7e-14  Score=124.82  Aligned_cols=153  Identities=20%  Similarity=0.144  Sum_probs=94.9

Q ss_pred             CCCCCcceeCCCCCccccchhhhcccCC-cccccCCC----CC-C--CCCCCCccEEEccCCccccccCCchhhhhccCC
Q psy4162          10 DPEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES----PP-M--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILD   81 (210)
Q Consensus        10 ~~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~----~~-~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~   81 (210)
                      .|.....||+++|.++.+.+..+.++++ ..+.++..    .. +  +..+++|+.|++++|.++.+.+      ..|..
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p------~~~~~   95 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP------DAFQG   95 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT------TSSCS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH------hHccC
Confidence            4456677999999999888777776666 11111111    11 1  3666677777777777776655      66677


Q ss_pred             CCCCCEEECcCCCCCcCC--cccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC-
Q psy4162          82 PDLIGWIDLSFNNIKNVD--KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI-  158 (210)
Q Consensus        82 l~~L~~L~Ls~n~i~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l-  158 (210)
                      +++|+.|++++|.++...  ...+..+++|+.|++++|.++.......++++++|+.|++++|.+.....   ..+..+ 
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~---~~l~~l~  172 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE---HELEPLQ  172 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS---GGGHHHH
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH---HHccccc
Confidence            777777777777766522  22366677777777777777665422346667777777777777765433   133333 


Q ss_pred             -cCcccccCCCCCH
Q psy4162         159 -PQLVTLDSVFILP  171 (210)
Q Consensus       159 -~~L~~L~l~~~~~  171 (210)
                       ++|+.|+++.|..
T Consensus       173 ~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          173 GKTLSFFSLAANSL  186 (844)
T ss_dssp             HCSSCCCEECCSBS
T ss_pred             CCccceEECCCCcc
Confidence             5677777766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=9.6e-14  Score=98.90  Aligned_cols=111  Identities=16%  Similarity=0.192  Sum_probs=94.1

Q ss_pred             CCccEEEccCCccc--cccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162          53 YDTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        53 ~~L~~L~ls~n~l~--~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  130 (210)
                      ++++.|++++|.++  .++       ..+..+++|+.|++++|+++.+  ..+..+++|+.|++++|.+++..+ ..+..
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-------GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEK   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-------SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHH
T ss_pred             ccCeEEEccCCcCChhHHH-------HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhh
Confidence            34999999999998  555       6678889999999999999998  348899999999999999998443 56777


Q ss_pred             CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      +++|+.|++++|.+.+++..  ..+..+++|+.|++++|.+....
T Consensus        87 l~~L~~L~ls~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHH--GGGGGCTTCCEEECTTCGGGGST
T ss_pred             CCCCCEEECCCCcCCChHHH--HHHhhCCCCCEEeCcCCcccchH
Confidence            99999999999999987521  25899999999999999876543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.47  E-value=2.1e-13  Score=115.75  Aligned_cols=151  Identities=15%  Similarity=0.064  Sum_probs=112.0

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC--------CCCCCCccEEEccCCcccc-ccCCchhhhhccCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM--------LVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDP   82 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~--------~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l   82 (210)
                      ....|++++|+++...+..+..+++ ..+.+.-..+.        ...+++|+.|++++|.+.. ++.      ..+..+
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~------~~~~~l  398 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK------GDCSWT  398 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG------CSCCCC
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc------chhccC
Confidence            4566999999998855555554444 11111111111        1577889999999999888 664      567788


Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV  162 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~  162 (210)
                      ++|+.|++++|+++...+..+.  ++|+.|++++|+++.++  ..+..+++|+.|++++|+++.++.   ..+..+++|+
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~  471 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQ  471 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred             ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCccc
Confidence            8999999999988765443232  68999999999999887  345589999999999999999987   3488899999


Q ss_pred             cccCCCCCHHHHHH
Q psy4162         163 TLDSVFILPSEKQE  176 (210)
Q Consensus       163 ~L~l~~~~~~~~~~  176 (210)
                      .|++++|+......
T Consensus       472 ~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          472 KIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEECcCCCCcccCC
Confidence            99999998755443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.47  E-value=4e-14  Score=112.99  Aligned_cols=117  Identities=16%  Similarity=0.074  Sum_probs=75.1

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCC-----CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcc--
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP-----DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY--  122 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l-----~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~--  122 (210)
                      ..+++|+.|++++|.+++.+       ..+..+     ++|+.|++++|+++.+++..+..+++|+.|++++|.+.+.  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~-------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRD-------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSS-------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             hcCCCccEEEccCCCCcchh-------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            45566777888777777763       222222     6777777777777777766677777777777777776542  


Q ss_pred             -ccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         123 -LSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       123 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                       +....+..+++|+.|++++|.++.++......+..+++|+.|++++|.+..
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence             110122667777777777777775544333345566777777777776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.47  E-value=9e-14  Score=111.08  Aligned_cols=106  Identities=22%  Similarity=0.194  Sum_probs=70.2

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      +|+.|++++|.+++..+      ..+..+. |+.|++++|+++...+..+..+++|+.|++++|.++...+  .+..+++
T Consensus       175 ~L~~L~L~~N~l~~~~~------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~  245 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIP------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKN  245 (313)
T ss_dssp             TCCEEECCSSEEEEECC------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTT
T ss_pred             cCcEEECcCCeeeccCC------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCC
Confidence            45555555555543332      4455554 6666666666666666666777777777777777776553  3667778


Q ss_pred             cCEEeeeCCCCC-CccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         134 LRTLSLYGNPIE-KIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       134 L~~L~l~~n~l~-~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+.|++++|.+. .++.    .+..+++|+.|++++|.+.
T Consensus       246 L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCEEECCSSCCEECCCG----GGGGCTTCCEEECCSSEEE
T ss_pred             CCEEECcCCcccCcCCh----HHhcCcCCCEEECcCCccc
Confidence            888888888887 4454    5777888888888888654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=3.6e-13  Score=108.83  Aligned_cols=110  Identities=18%  Similarity=0.227  Sum_probs=98.0

Q ss_pred             cceeCCCC-CccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccC-CccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          15 IPLDLSFQ-QIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH-NKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        15 ~~L~ls~n-~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ..++++++ +|+.+|.  +..+++                 |+.|+|++ |.|+.+++      ..|..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~-----------------L~~L~l~~~n~l~~~~~------~~~~~l~~L~~L~l~~   65 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAEN-----------------LTELYIENQQHLQHLEL------RDLRGLGELRNLTIVK   65 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSC-----------------CSEEECCSCSSCCEECG------GGSCSCCCCSEEECCS
T ss_pred             CEEEcCCCCCCCccCC--CCCCCC-----------------eeEEEccCCCCCCCcCh------hHhccccCCCEEECCC
Confidence            45899998 9999998  665666                 99999996 99999987      8899999999999999


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchH
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYR  151 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  151 (210)
                      |+++++++..|..+++|+.|+|++|.++.+++ ..+..++ |+.|++.+|++.+.+..+
T Consensus        66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A           66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             SCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred             CccceeCHHHhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCCCccH
Confidence            99999999889999999999999999999986 6677666 999999999999877643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=3.1e-13  Score=117.07  Aligned_cols=139  Identities=23%  Similarity=0.235  Sum_probs=86.1

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCC---CCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGES---PPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~---~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|+|+.+++  +..+++ ..+.+...   .+. ...+++|+.|+|++|.+..++        .+..+++|+.|
T Consensus        67 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~--------~l~~l~~L~~L  136 (605)
T 1m9s_A           67 VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN--------GLVHLPQLESL  136 (605)
T ss_dssp             CCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG--------GGGGCTTCSEE
T ss_pred             CCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc--------cccCCCccCEE
Confidence            3446677777666665  223333 11111111   112 255666666666666666643        24556777777


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +|++|+++.+.  .+..+++|+.|+|++|.+...++   +..+++|+.|+|++|.+++++.     +..+++|+.|++++
T Consensus       137 ~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          137 YLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFS  206 (605)
T ss_dssp             ECCSSCCCCCG--GGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEECCS
T ss_pred             ECCCCccCCch--hhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCChH-----HccCCCCCEEEccC
Confidence            77777777762  26677777777777777776653   6677777777777777777643     66777777777777


Q ss_pred             CCHH
Q psy4162         169 ILPS  172 (210)
Q Consensus       169 ~~~~  172 (210)
                      |++.
T Consensus       207 N~l~  210 (605)
T 1m9s_A          207 QECL  210 (605)
T ss_dssp             EEEE
T ss_pred             CcCc
Confidence            7653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.46  E-value=4.3e-13  Score=114.47  Aligned_cols=112  Identities=15%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCccc-----------------ccCCCCccEEE
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNM-----------------FTNFPNLKILY  113 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-----------------~~~~~~L~~L~  113 (210)
                      .+++|+.|++++|+++.++       ..+..+++|+.|++++|+++.++...                 ...+++|+.|+
T Consensus       385 ~l~~L~~L~Ls~N~l~~lp-------~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~  457 (549)
T 2z81_A          385 TLKNLTSLDISRNTFHPMP-------DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY  457 (549)
T ss_dssp             GCTTCCEEECTTCCCCCCC-------SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             cCCCCCEEECCCCCCccCC-------hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence            3445666666666555544       23344444444444444444333211                 13578899999


Q ss_pred             ccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         114 LHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       114 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      +++|+++.++.   ...+++|+.|++++|.+++++.   ..+..+++|+.|++++|+.....
T Consensus       458 Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          458 ISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCCT---TGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CCCCccCcCCC---cccCccCCEEecCCCccCCcCH---HHHhcCcccCEEEecCCCccCCC
Confidence            99999988774   4578999999999999998876   36889999999999999865443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.46  E-value=2e-13  Score=109.10  Aligned_cols=103  Identities=17%  Similarity=-0.015  Sum_probs=64.9

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL  134 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L  134 (210)
                      |+.|++++|.++...+      ..+..+++|+.|++++|+++...+. +..+++|+.|++++|.+++..+ ..+..+++|
T Consensus       199 L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L  270 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDAS------VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFL  270 (313)
T ss_dssp             CSEEECCSSEEEECCG------GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-GGGGGCTTC
T ss_pred             ccEEECcCCcccCcCC------HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC-hHHhcCcCC
Confidence            6667777776666544      5666666677777777766655544 5556667777777776664433 556666667


Q ss_pred             CEEeeeCCCCCC-ccchHHHHHHhCcCcccccCCCCC
Q psy4162         135 RTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       135 ~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      +.|++++|++++ +|.     ...+++|+.+++.+|+
T Consensus       271 ~~L~Ls~N~l~~~ip~-----~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          271 HSLNVSFNNLCGEIPQ-----GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEEECCSSEEEEECCC-----STTGGGSCGGGTCSSS
T ss_pred             CEEECcCCcccccCCC-----CccccccChHHhcCCC
Confidence            777777776663 333     2556666666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=1.1e-13  Score=103.37  Aligned_cols=110  Identities=11%  Similarity=0.125  Sum_probs=90.7

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+++|+.|++++|.++.++        .+..+++|+.|++++|+++...+..+..+++|+.|++++|.++.... ..+.
T Consensus        63 ~~l~~L~~L~l~~n~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~  133 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATNYN--------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKIN  133 (197)
T ss_dssp             GGCTTCSEEEEESCCCSCCG--------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHT
T ss_pred             hcCCCCCEEEccCCCCCcch--------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHh
Confidence            66788888888888776653        46678899999999999987555558889999999999999987553 6688


Q ss_pred             cCCCcCEEeeeCCC-CCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         130 RVNSLRTLSLYGNP-IEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       130 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      .+++|+.|++++|. +..++.     +..+++|+.|++++|.+.+
T Consensus       134 ~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          134 TLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             TCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCCCC
T ss_pred             hCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCCcC
Confidence            89999999999998 887764     7889999999999988755

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.3e-13  Score=100.27  Aligned_cols=111  Identities=21%  Similarity=0.206  Sum_probs=94.4

Q ss_pred             CCccEEEccCCccc--cccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162          53 YDTRSLWLSHNKIS--LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        53 ~~L~~L~ls~n~l~--~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  130 (210)
                      ++|+.|++++|.++  .++       ..+..+++|+.|++++|.++.+  ..+..+++|+.|++++|.+....+ ..+..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~-------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIE-------GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCS-------SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHH
T ss_pred             ccCCEEECCCCCCChhhHH-------HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhh
Confidence            45999999999998  666       4567789999999999999998  348889999999999999998543 66777


Q ss_pred             CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      +++|+.|++++|.+++++..  ..+..+++|+.|++++|.+.+..
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGG--GGGSSCSCCCEEECCSSGGGTST
T ss_pred             CCCCCEEeccCCccCcchhH--HHHhcCCCCCEEEeeCCcCcchH
Confidence            99999999999999997631  25888999999999999876543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=2.6e-13  Score=109.11  Aligned_cols=104  Identities=17%  Similarity=0.100  Sum_probs=50.5

Q ss_pred             CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162          53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN  132 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~  132 (210)
                      ++|+.|++++|.++.++       ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+ ..+..++
T Consensus       206 ~~L~~L~L~~N~l~~l~-------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~  277 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSALG-------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLT  277 (328)
T ss_dssp             TTCCEEEEESSCCCCCC-------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCT
T ss_pred             CCCCEEEccCCCCCcCc-------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCC
Confidence            33555555555555443       234444555555555554444444334555555555555554443332 3345555


Q ss_pred             CcCEEeeeCCCCCC-ccchHHHHHHhCcCcccccCCC
Q psy4162         133 SLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus       133 ~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +|+.|++++|++.+ +|.    .+..+++|+.+++..
T Consensus       278 ~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          278 QLEKLDLRGCVNLSRLPS----LIAQLPANCIILVPP  310 (328)
T ss_dssp             TCCEEECTTCTTCCCCCG----GGGGSCTTCEEECCG
T ss_pred             CCCEEeCCCCCchhhccH----HHhhccCceEEeCCH
Confidence            55555555544432 333    455555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=7.8e-14  Score=111.17  Aligned_cols=83  Identities=19%  Similarity=0.114  Sum_probs=44.2

Q ss_pred             CCCCCCCEEECcCCCCCcCCcccccCC---CCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHH
Q psy4162          80 LDPDLIGWIDLSFNNIKNVDKNMFTNF---PNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST  156 (210)
Q Consensus        80 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  156 (210)
                      ..+++|+.|++++|+++...+..+..+   ++|+.|++++|+++.++. . +  .++|+.|++++|.+++++.     +.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~-~--~~~L~~L~Ls~N~l~~~~~-----~~  291 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-G-L--PAKLRVLDLSSNRLNRAPQ-----PD  291 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-C-C--CSCCSCEECCSCCCCSCCC-----TT
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-h-h--cCCCCEEECCCCcCCCCch-----hh
Confidence            344555666666666555532223333   456666666666655542 1 1  1456666666666665543     34


Q ss_pred             hCcCcccccCCCCCH
Q psy4162         157 MIPQLVTLDSVFILP  171 (210)
Q Consensus       157 ~l~~L~~L~l~~~~~  171 (210)
                      .+++|+.|++++|++
T Consensus       292 ~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          292 ELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCCCSCEECSSTTT
T ss_pred             hCCCccEEECcCCCC
Confidence            556666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=2.2e-13  Score=99.85  Aligned_cols=112  Identities=23%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccccc
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  130 (210)
                      .+.+|+.|++++|.++.++.+       ....++|+.|++++|.++.+.  .+..+++|+.|++++|.++.+++ ..+..
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~-------~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~   86 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENL-------GATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGE-GLDQA   86 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCG-------GGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECS-CHHHH
T ss_pred             CcCCceEEEeeCCCCchhHHh-------hhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCc-chhhc
Confidence            344599999999999988642       222358999999999999983  38899999999999999999875 55689


Q ss_pred             CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162         131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      +++|+.|++++|.+..++..  ..+..+++|+.|++++|++.+.
T Consensus        87 l~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDL--DPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGG--GGGGGCTTCCEEECCSSGGGGS
T ss_pred             CCCCCEEECCCCcCCcchhh--HhhhcCCCCCEEEecCCCCCCc
Confidence            99999999999999988752  2478899999999999988643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=6.1e-14  Score=111.79  Aligned_cols=90  Identities=16%  Similarity=0.083  Sum_probs=38.5

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCc---CC-cccccCCCCccEEEccCCccCccccc--
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN---VD-KNMFTNFPNLKILYLHKNQIEEYLSV--  125 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~-~~~~~~~~~L~~L~l~~n~i~~~~~~--  125 (210)
                      +++|+.|++++|.+..+++      ..|..+++|+.|++++|++.+   ++ ...+..+++|+.|++++|.++..+..  
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  217 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSC------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA  217 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCT------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhH------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence            4444444444444444443      444444445555555554432   11 11123344455555555544433310  


Q ss_pred             cccccCCCcCEEeeeCCCCCCc
Q psy4162         126 FVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus       126 ~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      ..++.+++|+.|++++|.+.+.
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCC
T ss_pred             HHHhcCCCCCEEECCCCCCCcc
Confidence            0123444555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=1.1e-13  Score=122.25  Aligned_cols=111  Identities=17%  Similarity=0.127  Sum_probs=98.1

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+..|+.|+|++|.+..++       ..+..+++|+.|+|++|.++.++.. +..+++|+.|+|++|.++.++  ..++
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~-------~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp--~~~~  290 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNIS-------ANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSLP--AELG  290 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCC-------GGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSCC--SSGG
T ss_pred             ccCCCCcEEECCCCCCCCCC-------hhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCccC--hhhc
Confidence            77888999999999999887       3444789999999999999988765 789999999999999999886  5688


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      .+++|+.|+|++|.++.+|.    .+..+++|+.|++++|.+...
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSH
T ss_pred             CCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCC
Confidence            99999999999999999987    589999999999999987643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.44  E-value=9.2e-13  Score=106.21  Aligned_cols=144  Identities=20%  Similarity=0.260  Sum_probs=113.2

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW   87 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~   87 (210)
                      ....|++++|.++.++..  ..++. ..+.+......    ...+++|+.|++++|.++.++       . +..+++|+.
T Consensus       178 ~L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-------~-~~~l~~L~~  247 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS-------P-LANLSQLTW  247 (347)
T ss_dssp             TCSEEECTTSCCCCCGGG--GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-------G-GTTCTTCCE
T ss_pred             CCCEEEccCCcccccccc--cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc-------c-hhcCCCCCE
Confidence            356799999999998873  33344 11222222222    267889999999999998876       3 677899999


Q ss_pred             EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162          88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      |++++|.++.++.  +..+++|+.|++++|.++.++   .+..+++|+.|++++|++.+...   ..+..+++|+.|+++
T Consensus       248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLS  319 (347)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECC
T ss_pred             EECCCCccCCChh--HhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEcc
Confidence            9999999998743  788999999999999998875   37789999999999999987765   478999999999999


Q ss_pred             CCCHHHH
Q psy4162         168 FILPSEK  174 (210)
Q Consensus       168 ~~~~~~~  174 (210)
                      +|++.+.
T Consensus       320 ~n~l~~~  326 (347)
T 4fmz_A          320 QNHITDI  326 (347)
T ss_dssp             SSSCCCC
T ss_pred             CCccccc
Confidence            9987553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.42  E-value=6.1e-13  Score=118.22  Aligned_cols=149  Identities=17%  Similarity=0.067  Sum_probs=113.8

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCC----CC--CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP----PM--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~----~~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ....|++++|.++...+..+.++++ ..+.+....    .+  ...+++|+.|++++|.+.+..+      ..+..+++|
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L  468 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP------QELMYVKTL  468 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC------GGGGGCTTC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC------HHHcCCCCc
Confidence            3567999999998666655555544 111111111    11  2667889999999998886655      778888999


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC-ccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L  164 (210)
                      +.|++++|++++..+..+..+++|+.|++++|++++..+ ..++.+++|+.|++++|.+.+ +|.    .+..+++|+.|
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L  543 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWL  543 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEE
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEE
Confidence            999999999987777668889999999999999986655 778889999999999999985 454    68899999999


Q ss_pred             cCCCCCHH
Q psy4162         165 DSVFILPS  172 (210)
Q Consensus       165 ~l~~~~~~  172 (210)
                      ++++|...
T Consensus       544 ~Ls~N~l~  551 (768)
T 3rgz_A          544 DLNTNLFN  551 (768)
T ss_dssp             ECCSSEEE
T ss_pred             ECCCCccC
Confidence            99988754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=1.7e-13  Score=109.57  Aligned_cols=144  Identities=17%  Similarity=0.108  Sum_probs=112.7

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      ....|++++|.++.++...  .+..  +.+....+.   ...+++|+.|++++|+++.+++      ..+..+++|+.|+
T Consensus        81 ~L~~L~Ls~n~l~~l~~~~--~L~~--L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~  150 (317)
T 3o53_A           81 TLRTLDLNNNYVQELLVGP--SIET--LHAANNNISRVSCSRGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLD  150 (317)
T ss_dssp             TCCEEECCSSEEEEEEECT--TCCE--EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG------BCTGGGSSEEEEE
T ss_pred             CCCEEECcCCccccccCCC--CcCE--EECCCCccCCcCccccCCCCEEECCCCCCCCccc------hhhhccCCCCEEE
Confidence            3456999999998877431  1111  112222222   2567889999999999999876      6788889999999


Q ss_pred             CcCCCCCcCCcccc-cCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          90 LSFNNIKNVDKNMF-TNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        90 Ls~n~i~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +++|+++.+.+..+ ..+++|+.|++++|.++.++.   ...+++|+.|++++|.++.++.    .+..+++|+.|++++
T Consensus       151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~----~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRN  223 (317)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTT
T ss_pred             CCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchh----hhcccCcccEEECcC
Confidence            99999999866545 468999999999999998864   3358999999999999999887    488899999999999


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+.+
T Consensus       224 N~l~~  228 (317)
T 3o53_A          224 NKLVL  228 (317)
T ss_dssp             SCCCE
T ss_pred             Ccccc
Confidence            98753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=1.8e-13  Score=115.71  Aligned_cols=144  Identities=17%  Similarity=0.106  Sum_probs=113.6

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      ....|++++|.|+.++..  .++..  +.+....+.   ...+++|+.|++++|.++.+++      ..+..+++|+.|+
T Consensus        81 ~L~~L~Ls~N~l~~l~~~--~~L~~--L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~  150 (487)
T 3oja_A           81 TLRTLDLNNNYVQELLVG--PSIET--LHAANNNISRVSCSRGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLD  150 (487)
T ss_dssp             TCCEEECCSSEEEEEEEC--TTCCE--EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG------BCGGGGSSEEEEE
T ss_pred             CCCEEEecCCcCCCCCCC--CCcCE--EECcCCcCCCCCccccCCCCEEECCCCCCCCCCc------hhhcCCCCCCEEE
Confidence            345699999999887754  11111  112222222   2567889999999999999876      6788889999999


Q ss_pred             CcCCCCCcCCccccc-CCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          90 LSFNNIKNVDKNMFT-NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +++|.++++.+..+. .+++|+.|++++|.+++.++   ...+++|+.|++++|.++++++    .+..+++|+.|++++
T Consensus       151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~Ls~  223 (487)
T 3oja_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRN  223 (487)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTT
T ss_pred             CCCCCCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCH----hHcCCCCccEEEecC
Confidence            999999997665565 78999999999999998864   3468999999999999999987    588999999999999


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+..
T Consensus       224 N~l~~  228 (487)
T 3oja_A          224 NKLVL  228 (487)
T ss_dssp             SCCCE
T ss_pred             CcCcc
Confidence            98653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.41  E-value=8.3e-13  Score=117.37  Aligned_cols=148  Identities=18%  Similarity=0.067  Sum_probs=116.5

Q ss_pred             CCcceeCCCCCccccchhhhcc--cCCcccccCCCC------CC--CCCCCCccEEEccCCccccccCCchhhhhccCCC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQK--LKPNVHRLGESP------PM--LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDP   82 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~--l~~~~~~~~~~~------~~--~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l   82 (210)
                      ....|++++|.++...+..+..  +++ +..+.+..      .+  ...+++|+.|++++|.+++..+      ..+..+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------~~l~~l  441 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP------SSLGSL  441 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCC-CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC------GGGGGC
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCC-ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc------HHHhcC
Confidence            3567999999997533332221  111 11222221      11  3778899999999999997766      788899


Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC-ccchHHHHHHhCcCc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQL  161 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L  161 (210)
                      ++|+.|++++|++.+..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|++.+ +|.    .+..+++|
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L  516 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENL  516 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC-HHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCC
Confidence            999999999999998777778899999999999999997665 778999999999999999995 454    68999999


Q ss_pred             ccccCCCCCHH
Q psy4162         162 VTLDSVFILPS  172 (210)
Q Consensus       162 ~~L~l~~~~~~  172 (210)
                      +.|++++|...
T Consensus       517 ~~L~L~~N~l~  527 (768)
T 3rgz_A          517 AILKLSNNSFS  527 (768)
T ss_dssp             CEEECCSSCCE
T ss_pred             CEEECCCCccc
Confidence            99999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.41  E-value=1.3e-12  Score=113.15  Aligned_cols=140  Identities=26%  Similarity=0.274  Sum_probs=104.1

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|+++.|.+..++..  ..+++ ..+.+.-..+   . ...+++|+.|+|++|.+..++        .+..+++|+.|
T Consensus        45 L~~L~l~~n~i~~l~~l--~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--------~l~~l~~L~~L  114 (605)
T 1m9s_A           45 IDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--------SLKDLKKLKSL  114 (605)
T ss_dssp             CCCCBCTTCCCCCCTTG--GGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--------TSTTCTTCCEE
T ss_pred             CCEEECcCCCCCCChHH--ccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--------hhccCCCCCEE
Confidence            34588999999888753  33444 1111221112   2 367778888888888887754        36667889999


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +|++|++..++.  +..+++|+.|+|++|.++.+.   .+..+++|+.|+|++|.+.++++     +..+++|+.|++++
T Consensus       115 ~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          115 SLEHNGISDING--LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK  184 (605)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             EecCCCCCCCcc--ccCCCccCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcC
Confidence            999998888754  778889999999999888764   37788899999999999988765     77889999999999


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+.+
T Consensus       185 N~i~~  189 (605)
T 1m9s_A          185 NHISD  189 (605)
T ss_dssp             SCCCB
T ss_pred             CCCCC
Confidence            87755

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.40  E-value=9.6e-13  Score=114.70  Aligned_cols=143  Identities=23%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             cceeCCCCCccccchhhhcccCC-cccccCC---CCCC---CCCC-------CCccEEEccCCccccccCCchhhhhccC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM---LVGR-------YDTRSLWLSHNKISLVYGLDSLVHRTIL   80 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~---~~~l-------~~L~~L~ls~n~l~~~~~l~~~~~~~~~   80 (210)
                      ..|++++|.++.++...+..+++ ..+.+.-   ...+   +..+       ++|+.|++++|+++.++       ..+.
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-------~~~~  508 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-------DDFR  508 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-------GGGS
T ss_pred             CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-------hhhh
Confidence            44777777777777665543333 1111111   1111   1111       26777777777777665       3343


Q ss_pred             --CCCCCCEEECcCCCCCcCCcccccCCCCccEEEcc------CCccCccccccccccCCCcCEEeeeCCCCCCccchHH
Q psy4162          81 --DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH------KNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA  152 (210)
Q Consensus        81 --~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~------~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  152 (210)
                        .+++|+.|++++|+++.++.. +..+++|+.|+++      +|.+....+ ..+..+++|+.|++++|.+..+|.   
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ip~---  583 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRKVNE---  583 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCS---
T ss_pred             hccCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCcCCccCH---
Confidence              677778888888877776554 5667778888774      455544433 566777888888888888876766   


Q ss_pred             HHHHhCcCcccccCCCCCHH
Q psy4162         153 VVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       153 ~~l~~l~~L~~L~l~~~~~~  172 (210)
                       .+.  ++|+.|++++|+..
T Consensus       584 -~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          584 -KIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             -CCC--TTCCEEECCSCTTC
T ss_pred             -hHh--CcCCEEECcCCCCc
Confidence             222  67888888887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.40  E-value=8.3e-13  Score=115.09  Aligned_cols=103  Identities=19%  Similarity=0.124  Sum_probs=45.8

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCC-------CccEEEccCCccCcccc
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP-------NLKILYLHKNQIEEYLS  124 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-------~L~~L~l~~n~i~~~~~  124 (210)
                      +.+|+.|++++|.++.++.      ..+..+++|+.|++++|+++.++...+....       +|+.|++++|.++.++ 
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-  504 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-  504 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-
T ss_pred             CCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-
Confidence            3355555555555555443      3333444455555555544444433232221       4444444444444433 


Q ss_pred             ccccc--cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162         125 VFVLR--RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus       125 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                       ..+.  .+++|+.|++++|+++++|.    .+..+++|+.|++
T Consensus       505 -~~~~~~~l~~L~~L~Ls~N~l~~ip~----~~~~l~~L~~L~L  543 (636)
T 4eco_A          505 -DDFRATTLPYLVGIDLSYNSFSKFPT----QPLNSSTLKGFGI  543 (636)
T ss_dssp             -GGGSTTTCTTCCEEECCSSCCSSCCC----GGGGCSSCCEEEC
T ss_pred             -hhhhhccCCCcCEEECCCCCCCCcCh----hhhcCCCCCEEEC
Confidence             1222  44444444444444444433    2334444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.39  E-value=2e-12  Score=116.05  Aligned_cols=111  Identities=26%  Similarity=0.327  Sum_probs=67.3

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ....|++++|.++.+.+..+..+++                 |+.|++++|.++.+++      ..|..+++|+.|++++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~-----------------L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKD-----------------LKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCC-----------------CCEEEEESCCCCEECT------TTTTTCSSCCEEEEES
T ss_pred             CccEEECCCCcccccChhhhhcCCC-----------------CCEEECCCCcCCCCCh------HHhcCCCCCCEEECCC
Confidence            3455777777777776665555555                 6666666666665554      5555566666666666


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      |+++.+.+..+..+++|+.|++++|.+..+++ ..+.++++|+.|++++|.++.+
T Consensus       324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCCccCHHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCcc
Confidence            66665555555566666666666666655553 4555566666666666655544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=2.9e-12  Score=115.03  Aligned_cols=143  Identities=22%  Similarity=0.192  Sum_probs=90.7

Q ss_pred             cceeCCCCCccccchhhhcccCC-cccccC---CCCCC---CCC-------CCCccEEEccCCccccccCCchhhhhccC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLG---ESPPM---LVG-------RYDTRSLWLSHNKISLVYGLDSLVHRTIL   80 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~---~~~~~---~~~-------l~~L~~L~ls~n~l~~~~~l~~~~~~~~~   80 (210)
                      ..|++++|.++.++...+..+++ ..+.+.   +..++   +..       +++|+.|++++|+++.++       ..+.
T Consensus       676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-------~~l~  748 (876)
T 4ecn_A          676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-------DDFR  748 (876)
T ss_dssp             EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-------GGGS
T ss_pred             CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-------HHhh
Confidence            45777777777777665543333 111111   11111   111       127777777777777665       3443


Q ss_pred             --CCCCCCEEECcCCCCCcCCcccccCCCCccEEEccC------CccCccccccccccCCCcCEEeeeCCCCCCccchHH
Q psy4162          81 --DPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHK------NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRA  152 (210)
Q Consensus        81 --~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  152 (210)
                        .+++|+.|++++|+++.++.. +..+++|+.|++++      |.+....+ ..+.++++|+.|++++|.+..+|.   
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L~~Ip~---  823 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKVDE---  823 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCS---
T ss_pred             hccCCCcCEEEeCCCCCCccchh-hhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCCCccCH---
Confidence              677888888888888776554 66777888888765      55554443 567778888888888888876766   


Q ss_pred             HHHHhCcCcccccCCCCCHH
Q psy4162         153 VVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       153 ~~l~~l~~L~~L~l~~~~~~  172 (210)
                       .+  .++|+.||+++|++.
T Consensus       824 -~l--~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          824 -KL--TPQLYILDIADNPNI  840 (876)
T ss_dssp             -CC--CSSSCEEECCSCTTC
T ss_pred             -hh--cCCCCEEECCCCCCC
Confidence             22  257888888888653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=5.6e-13  Score=107.65  Aligned_cols=104  Identities=11%  Similarity=0.050  Sum_probs=91.5

Q ss_pred             cEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcC-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          56 RSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSF-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        56 ~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      ..++.+++ .++.+|       . +..+.+|+.|+|++ |+++.+++..|..+.+|+.|+|++|+++++++ ..|.++++
T Consensus        11 ~~v~~~~~n~l~~ip-------~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~   81 (347)
T 2ifg_A           11 SGLRCTRDGALDSLH-------H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPR   81 (347)
T ss_dssp             SCEECCSSCCCTTTT-------T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSC
T ss_pred             CEEEcCCCCCCCccC-------C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcC
Confidence            45688887 899887       6 77788999999996 99999998889999999999999999999986 78999999


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+.|+|++|.++.++.   ..+..++ |+.|++.+|+..
T Consensus        82 L~~L~l~~N~l~~~~~---~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           82 LSRLNLSFNALESLSW---KTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCSCCCS---TTTCSCC-CCEEECCSSCCC
T ss_pred             CCEEeCCCCccceeCH---HHcccCC-ceEEEeeCCCcc
Confidence            9999999999999987   3455555 999999999764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.37  E-value=3.6e-12  Score=106.96  Aligned_cols=140  Identities=20%  Similarity=0.241  Sum_probs=82.0

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCC---CC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESP---PM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~---~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|++++|+++.++...  .+++ ..+.+....   .. ...+++|+.|++++|.++.+++        +..+++|+.|
T Consensus       223 L~~L~l~~n~l~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L  292 (466)
T 1o6v_A          223 LDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--------LAGLTALTNL  292 (466)
T ss_dssp             CCEEECCSSCCCCCGGGG--GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--------GTTCTTCSEE
T ss_pred             CCEEECCCCCcccchhhh--cCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--------ccCCCccCeE
Confidence            455788888877765432  2233 111111111   11 2566677777777777776542        4555667777


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|++..+++  +..+++|+.|++++|.+++.++   +..+++|+.|++++|++.+++.     +..+++|+.|++++
T Consensus       293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSS-----LANLTNINWLSAGH  362 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchh-----hccCCCCCEEeCCC
Confidence            777776666554  5566667777777776666543   4556666666666666666533     55566666666666


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+.+
T Consensus       363 n~l~~  367 (466)
T 1o6v_A          363 NQISD  367 (466)
T ss_dssp             SCCCB
T ss_pred             CccCc
Confidence            65533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=1.9e-12  Score=111.44  Aligned_cols=104  Identities=21%  Similarity=0.288  Sum_probs=93.0

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      .|+.|++++|.+++++       . +..+++|+.|++++|+++.++.. ++.+++|+.|++++|.+++++   .++.+++
T Consensus       442 ~L~~L~Ls~n~l~~lp-------~-~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC-------H-LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD---GVANLPR  509 (567)
T ss_dssp             TCSEEECTTSCCSSCC-------C-GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG---GGTTCSS
T ss_pred             CceEEEecCCCCCCCc-------C-ccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc---ccCCCCC
Confidence            4789999999999986       3 66778999999999999988764 889999999999999999976   4889999


Q ss_pred             cCEEeeeCCCCCCc--cchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         134 LRTLSLYGNPIEKI--REYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       134 L~~L~l~~n~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      |+.|++++|.++++  |.    .+..+++|+.|++++|++..
T Consensus       510 L~~L~Ls~N~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          510 LQELLLCNNRLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CCEEECCSSCCCSSSTTG----GGGGCTTCCEEECTTSGGGG
T ss_pred             CcEEECCCCCCCCCCCcH----HHhcCCCCCEEEecCCcCCC
Confidence            99999999999998  55    79999999999999998754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=5.4e-13  Score=117.91  Aligned_cols=88  Identities=22%  Similarity=0.290  Sum_probs=78.1

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV  131 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l  131 (210)
                      +.+|+.|+|++|.|+.++       ..|..+++|+.|+|++|+++.++.. +..+.+|+.|+|++|.++.++  ..++.+
T Consensus       246 l~~L~~L~Ls~N~l~~lp-------~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~lp--~~~~~l  315 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTELP-------AEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVTTLP--WEFGNL  315 (727)
T ss_dssp             CCSCSCCBCTTSCCSCCC-------GGGGGGTTCCEEECTTSCCSSCCSS-GGGGTTCSEEECCSSCCCCCC--SSTTSC
T ss_pred             CCCCCEEEeeCCcCcccC-------hhhhCCCCCCEEeCcCCcCCccChh-hcCCCCCCEEECCCCCCCccC--hhhhcC
Confidence            445999999999999776       6788899999999999999988665 889999999999999999887  448999


Q ss_pred             CCcCEEeeeCCCCCCccc
Q psy4162         132 NSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus       132 ~~L~~L~l~~n~l~~~~~  149 (210)
                      ++|+.|+|++|++++.+.
T Consensus       316 ~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             TTCCCEECTTSCCCSHHH
T ss_pred             CCccEEeCCCCccCCCCh
Confidence            999999999999997644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.33  E-value=6e-12  Score=108.19  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCC---C-CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM---L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~---~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      ...|++++|+|+.++.  +.   .++..+.+....   . ..+++|+.|++++|.++.++.          .+++|+.|+
T Consensus       102 L~~L~Ls~N~l~~ip~--l~---~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~  166 (571)
T 3cvr_A          102 LEYLDACDNRLSTLPE--LP---ASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE----------LPTSLEVLS  166 (571)
T ss_dssp             CCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----------CCTTCCEEE
T ss_pred             CCEEEccCCCCCCcch--hh---cCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC----------cCCCcCEEE
Confidence            3456777777766665  22   111112222211   1 356678888888888887652          357899999


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCc-------CEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSL-------RTLSLYGNPIEKIREYRAVVSTMIPQLV  162 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~l~~L~  162 (210)
                      +++|+++.++.  +.  ++|+.|++++|.++.++.   +..  +|       +.|++++|.++.+|.    .+..+++|+
T Consensus       167 Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~L~  233 (571)
T 3cvr_A          167 VRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDPTC  233 (571)
T ss_dssp             CCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG----GGGGSCTTE
T ss_pred             CCCCCCCCcch--hh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH----HHhcCCCCC
Confidence            99999998776  44  899999999999998773   333  66       999999999999987    567799999


Q ss_pred             cccCCCCCHHHHH
Q psy4162         163 TLDSVFILPSEKQ  175 (210)
Q Consensus       163 ~L~l~~~~~~~~~  175 (210)
                      .|++++|++....
T Consensus       234 ~L~L~~N~l~~~~  246 (571)
T 3cvr_A          234 TIILEDNPLSSRI  246 (571)
T ss_dssp             EEECCSSSCCHHH
T ss_pred             EEEeeCCcCCCcC
Confidence            9999999986644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=4.3e-12  Score=113.89  Aligned_cols=124  Identities=17%  Similarity=0.074  Sum_probs=87.8

Q ss_pred             CcceeCCCCCccccchhhhcccCC------cccccC-----CCCCC--CC--CCCCccEEEccCCccccccCCchhhhhc
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP------NVHRLG-----ESPPM--LV--GRYDTRSLWLSHNKISLVYGLDSLVHRT   78 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~------~~~~~~-----~~~~~--~~--~l~~L~~L~ls~n~l~~~~~l~~~~~~~   78 (210)
                      ...|++++|+|+.++...+.....      .+..+.     +..++  ..  .+++|+.|++++|.++.++       ..
T Consensus       699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp-------~~  771 (876)
T 4ecn_A          699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP-------TQ  771 (876)
T ss_dssp             CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC-------CG
T ss_pred             CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccc-------hh
Confidence            456889999888887765542210      111111     12222  13  7888999999999998875       55


Q ss_pred             cCCCCCCCEEECcC------CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162          79 ILDPDLIGWIDLSF------NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus        79 ~~~l~~L~~L~Ls~------n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                      +..+++|+.|++++      |++....+..+..+++|+.|++++|.+..++. . +.  ++|+.|++++|++..+.
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~-~-l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-K-LT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-C-CC--SSSCEEECCSCTTCEEE
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH-h-hc--CCCCEEECCCCCCCccC
Confidence            66788999999876      66666666568888999999999999977764 2 32  68999999999988664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.33  E-value=1.4e-12  Score=105.73  Aligned_cols=90  Identities=17%  Similarity=0.216  Sum_probs=57.1

Q ss_pred             CCCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCcccc-ccCCchhhhhccCCCCCCCE-EE
Q psy4162          12 EFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPDLIGW-ID   89 (210)
Q Consensus        12 ~~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~~L~~-L~   89 (210)
                      ...+.|++++|+|+.++...|.++++                 |+.|++++|++.+ ++.      ..|.+++++.+ +.
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~-----------------L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGD-----------------LEKIEISQNDVLEVIEA------DVFSNLPKLHEIRI   86 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTT-----------------CCEEEEECCTTCCEECT------TSBCSCTTCCEEEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCC-----------------CCEEECcCCCCCCccCh------hHhhcchhhhhhhc
Confidence            35566788888888777777766666                 7777777777643 443      45566655544 44


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCcccc
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLS  124 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  124 (210)
                      +..|+++.+++..|..+++|+.|++++|+++..++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCc
Confidence            44566666666556666666666666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.31  E-value=1.6e-11  Score=102.96  Aligned_cols=142  Identities=22%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW   87 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~   87 (210)
                      ....|++++|.++.+.+..  .+++ ..+.+.....   . ...+++|+.|++++|.++.+++        +..+++|+.
T Consensus       200 ~L~~L~l~~n~l~~~~~~~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~  269 (466)
T 1o6v_A          200 NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--------LSGLTKLTE  269 (466)
T ss_dssp             TCSEEECCSSCCCCCGGGG--GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCSE
T ss_pred             CCCEEEecCCccccccccc--ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--------hhcCCCCCE
Confidence            3566999999999887733  2333 1111221122   2 2678889999999999887752        677789999


Q ss_pred             EECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162          88 IDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        88 L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      |++++|+++.+++  +..+++|+.|++++|.+...++   +..+++|+.|++++|.+.+.+.     +..+++|+.|+++
T Consensus       270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~  339 (466)
T 1o6v_A          270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFY  339 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECC
T ss_pred             EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECC
Confidence            9999999998876  7889999999999999988764   6789999999999999998876     6789999999999


Q ss_pred             CCCHHHH
Q psy4162         168 FILPSEK  174 (210)
Q Consensus       168 ~~~~~~~  174 (210)
                      +|.+.+.
T Consensus       340 ~n~l~~~  346 (466)
T 1o6v_A          340 NNKVSDV  346 (466)
T ss_dssp             SSCCCCC
T ss_pred             CCccCCc
Confidence            9987654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.29  E-value=2.9e-12  Score=103.78  Aligned_cols=108  Identities=12%  Similarity=0.155  Sum_probs=92.4

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      .+++.+.++++.+|... .  .+                 ++.|+|++|+|+.++.      ..|.++++|+.|+|++|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~--~~-----------------l~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-P--RN-----------------AIELRFVLTKLRVIQK------GAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-C--TT-----------------CSEEEEESCCCSEECT------TSSTTCTTCCEEEEECCT
T ss_pred             CEEEecCCCCCccCcCc-C--CC-----------------CCEEEccCCcCCCcCH------HHHcCCCCCCEEECcCCC
Confidence            46888999999998643 2  34                 9999999999999997      889999999999999999


Q ss_pred             CC-cCCcccccCCCCccE-EEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          95 IK-NVDKNMFTNFPNLKI-LYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        95 i~-~~~~~~~~~~~~L~~-L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      +. .++...|..++++.. +.+..|+++.+++ ..+..+++|+.|++++|.+..+++
T Consensus        66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             CCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCc
Confidence            74 467777888888765 6778899999986 889999999999999999987765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.27  E-value=2.7e-11  Score=101.65  Aligned_cols=136  Identities=21%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      ...|++++|.++.++.  +..+++ ..+.+....+.   .+.+++|+.|++++|.+++++         +..+++|+.|+
T Consensus        44 L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~l~~L~~L~  112 (457)
T 3bz5_A           44 LTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---------VTPLTKLTYLN  112 (457)
T ss_dssp             CCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---------CTTCTTCCEEE
T ss_pred             CCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---------cCCCCcCCEEE
Confidence            4569999999998863  444455 11111111122   255666777777777766642         44566777777


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCC-CCccchHHHHHHhCcCcccccCCC
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPI-EKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      +++|+++.++   +..+++|+.|++++|.+++++    ++.+++|+.|++++|.. ..+ .     +..+++|+.|++++
T Consensus       113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~-~-----~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL-D-----VTPQTQLTTLDCSF  179 (457)
T ss_dssp             CCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC-C-----CTTCTTCCEEECCS
T ss_pred             CCCCcCCeec---CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc-c-----cccCCcCCEEECCC
Confidence            7777777653   566777777777777777653    55677777777777743 333 2     45677888888887


Q ss_pred             CCHHH
Q psy4162         169 ILPSE  173 (210)
Q Consensus       169 ~~~~~  173 (210)
                      |.+..
T Consensus       180 n~l~~  184 (457)
T 3bz5_A          180 NKITE  184 (457)
T ss_dssp             SCCCC
T ss_pred             Cccce
Confidence            76544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=2.5e-12  Score=104.64  Aligned_cols=159  Identities=25%  Similarity=0.207  Sum_probs=103.7

Q ss_pred             CCcceeCCCCCccccch----hhhcccCCcccccCCCCCC-C-------CC-----CCCccEEEccCCccccccCCchhh
Q psy4162          13 FKIPLDLSFQQIQSLDK----VAVQKLKPNVHRLGESPPM-L-------VG-----RYDTRSLWLSHNKISLVYGLDSLV   75 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~----~~~~~l~~~~~~~~~~~~~-~-------~~-----l~~L~~L~ls~n~l~~~~~l~~~~   75 (210)
                      ....|++++|.++..+.    ..+.+++..+..+.+.... .       ..     .++|+.|++++|.++.... ..+ 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l-  100 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS-DEL-  100 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHH-
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH-HHH-
Confidence            45679999999998877    4555455222222332222 0       12     2788889999888887553 001 


Q ss_pred             hhccCCC-CCCCEEECcCCCCCcCCccccc----C-CCCccEEEccCCccCccccc---cccccCC-CcCEEeeeCCCCC
Q psy4162          76 HRTILDP-DLIGWIDLSFNNIKNVDKNMFT----N-FPNLKILYLHKNQIEEYLSV---FVLRRVN-SLRTLSLYGNPIE  145 (210)
Q Consensus        76 ~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~----~-~~~L~~L~l~~n~i~~~~~~---~~~~~l~-~L~~L~l~~n~l~  145 (210)
                      ...+..+ ++|+.|++++|+++......+.    . ..+|+.|++++|.++.....   ..+..++ +|+.|++++|.+.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            1234444 7899999999998887764332    3 35899999999988854420   2234554 8999999999988


Q ss_pred             CccchH-HHHHHhC-cCcccccCCCCCHHH
Q psy4162         146 KIREYR-AVVSTMI-PQLVTLDSVFILPSE  173 (210)
Q Consensus       146 ~~~~~~-~~~l~~l-~~L~~L~l~~~~~~~  173 (210)
                      +..... ...+..+ ++|+.||+++|.+.+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            654311 1245556 489999999998776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.24  E-value=5.4e-11  Score=103.31  Aligned_cols=80  Identities=19%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV  162 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~  162 (210)
                      ++|+.|++++|+++.++    ..+++|+.|++++|.++.++.     .+++|+.|++++|.++.+|.    .+..+++|+
T Consensus       221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPE----SLIHLSSET  287 (622)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCCG----GGGGSCTTC
T ss_pred             CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCCH----HHhhccccC
Confidence            67888888888888876    335789999999999988763     56889999999999999887    689999999


Q ss_pred             cccCCCCCHHHHH
Q psy4162         163 TLDSVFILPSEKQ  175 (210)
Q Consensus       163 ~L~l~~~~~~~~~  175 (210)
                      .|++++|++.+..
T Consensus       288 ~L~L~~N~l~~~~  300 (622)
T 3g06_A          288 TVNLEGNPLSERT  300 (622)
T ss_dssp             EEECCSCCCCHHH
T ss_pred             EEEecCCCCCCcC
Confidence            9999999986544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.24  E-value=6.1e-11  Score=99.40  Aligned_cols=61  Identities=16%  Similarity=0.317  Sum_probs=29.7

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEY  122 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~  122 (210)
                      +.+.+|+.|++++|++++++..          .++|+.|++++|+++.++.  +..+++|+.|++++|.++++
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~~----------~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPDL----------PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCC----------CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCCCCEEECCCCcCcccCCC----------cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcC
Confidence            4455566666666666554421          1244555555555444431  44444444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=2.3e-13  Score=101.68  Aligned_cols=136  Identities=26%  Similarity=0.367  Sum_probs=107.3

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|+++.++  .+.++++                 |+.|++++|.++.++       ..+..+++|+.|++++|
T Consensus        50 L~~L~ls~n~l~~l~--~~~~l~~-----------------L~~L~l~~n~l~~l~-------~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           50 CKHLALSTNNIEKIS--SLSGMEN-----------------LRILSLGRNLIKKIE-------NLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSEEECSEEEESCCC--CHHHHTT-----------------CCEEEEEEEEECSCS-------SHHHHHHHCSEEEEEEE
T ss_pred             CCEEECCCCCCcccc--ccccCCC-----------------CCEEECCCCCccccc-------chhhcCCcCCEEECcCC
Confidence            445667777766665  3444455                 999999999999887       34445578999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc-------cchHHHHHHhCcCcccccC
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI-------REYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~l~~L~~L~l  166 (210)
                      +++.++.  +..+++|+.|++++|.++.++.+..+..+++|+.|++++|++.+.       ..++...+..+++|+.||.
T Consensus       104 ~l~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          104 QIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             ECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             cCCcCCc--cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            9999763  788899999999999999877445788999999999999999766       4455667999999999996


Q ss_pred             CCCCHHHHHHH
Q psy4162         167 VFILPSEKQET  177 (210)
Q Consensus       167 ~~~~~~~~~~~  177 (210)
                      ..+...++..+
T Consensus       182 ~~i~~~e~~~a  192 (198)
T 1ds9_A          182 MPVDVDEREQA  192 (198)
T ss_dssp             GGGTTTTTTHH
T ss_pred             cccCHHHHHHH
Confidence            65555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.21  E-value=6.5e-11  Score=99.31  Aligned_cols=136  Identities=16%  Similarity=0.107  Sum_probs=105.6

Q ss_pred             CCcceeCCCCCccccchhhhcccCC-cccccCCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ....|++++|+++.++   +..+++ ..+.+.-..+.   .+.+++|+.|++++|+++.++         +..+++|+.|
T Consensus        65 ~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---------~~~l~~L~~L  132 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---------VSQNPLLTYL  132 (457)
T ss_dssp             TCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---------CTTCTTCCEE
T ss_pred             CCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---------CCCCCcCCEE
Confidence            3566999999999885   333333 11222222222   378899999999999998863         5677899999


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCc-cCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      ++++|+++.++   +..+++|+.|++++|. +..+    .+..+++|+.|++++|.+++++      +..+++|+.|+++
T Consensus       133 ~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~------l~~l~~L~~L~l~  199 (457)
T 3bz5_A          133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCD  199 (457)
T ss_dssp             ECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC------CTTCTTCCEEECC
T ss_pred             ECCCCccceec---cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec------cccCCCCCEEECc
Confidence            99999999973   6789999999999995 4443    2678899999999999999975      5678999999999


Q ss_pred             CCCHHH
Q psy4162         168 FILPSE  173 (210)
Q Consensus       168 ~~~~~~  173 (210)
                      +|.+..
T Consensus       200 ~N~l~~  205 (457)
T 3bz5_A          200 TNNITK  205 (457)
T ss_dssp             SSCCSC
T ss_pred             CCcCCe
Confidence            997654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=6e-11  Score=102.00  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      +|+.|++++|.++.++       .   .+++|+.|++++|+++.++.    .+++|+.|++++|.++.++.   +.  ++
T Consensus       121 ~L~~L~Ls~N~l~~lp-------~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~---l~--~~  181 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLP-------E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE---LP--ES  181 (571)
T ss_dssp             TCCEEECCSSCCSCCC-------C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CC--TT
T ss_pred             CCCEEECCCCcCCCCC-------C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch---hh--CC
Confidence            4445555555444433       2   34556666666666665544    24566666666666666552   33  66


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+.|++++|.++.+|.+........+.|+.|++++|.+.
T Consensus       182 L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             CCEEECCSSCCSSCCCCC--------CCEEEECCSSCCC
T ss_pred             CCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcce
Confidence            777777777776665411000111122367777776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.20  E-value=7.2e-12  Score=101.89  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=106.3

Q ss_pred             CCcceeCCCCCccccchhhhccc----CCcccccCCCCCC-C-----------CCC-CCccEEEccCCccccccCCchhh
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKL----KPNVHRLGESPPM-L-----------VGR-YDTRSLWLSHNKISLVYGLDSLV   75 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l----~~~~~~~~~~~~~-~-----------~~l-~~L~~L~ls~n~l~~~~~l~~~~   75 (210)
                      ....|++++|.++......+..+    ...+..+.+.... .           ..+ ++|+.|++++|.++.... ..+ 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l-  129 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEF-  129 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHH-
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHH-
Confidence            35679999999998766544432    1212222222222 0           223 789999999999988753 111 


Q ss_pred             hhccCC-CCCCCEEECcCCCCCcCCccc----ccCCC-CccEEEccCCccCccccccc----cccC-CCcCEEeeeCCCC
Q psy4162          76 HRTILD-PDLIGWIDLSFNNIKNVDKNM----FTNFP-NLKILYLHKNQIEEYLSVFV----LRRV-NSLRTLSLYGNPI  144 (210)
Q Consensus        76 ~~~~~~-l~~L~~L~Ls~n~i~~~~~~~----~~~~~-~L~~L~l~~n~i~~~~~~~~----~~~l-~~L~~L~l~~n~l  144 (210)
                      ...+.. ..+|+.|++++|+++......    +..++ +|+.|++++|.++.... ..    +..+ ++|+.|++++|.+
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC-AELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH-HHHHHHHHhCCCCCCEEECCCCCC
Confidence            133444 369999999999998654322    23444 99999999999987763 33    3445 5999999999999


Q ss_pred             CCccch-HHHHHHh-CcCcccccCCCCCHHHH
Q psy4162         145 EKIREY-RAVVSTM-IPQLVTLDSVFILPSEK  174 (210)
Q Consensus       145 ~~~~~~-~~~~l~~-l~~L~~L~l~~~~~~~~  174 (210)
                      ...... -...+.. .++|+.|++++|.+.+.
T Consensus       209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             ChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            873221 0124555 45999999999987653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.16  E-value=1.5e-10  Score=96.96  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162          53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN  132 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~  132 (210)
                      ++|+.|++++|++++++        .+..+++|+.|++++|++++++..    ..+|+.|++++|.++.++.   ++.++
T Consensus       131 ~~L~~L~L~~n~l~~lp--------~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~---~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP--------ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE---LQNLP  195 (454)
T ss_dssp             TTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC---CTTCT
T ss_pred             CCCCEEECcCCCCCCCc--------ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc---ccCCC
Confidence            45666666666666543        255566777777777776665442    2467777777777766542   56677


Q ss_pred             CcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         133 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       133 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +|+.|++++|.+.+++..       .++|+.|++++|...
T Consensus       196 ~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          196 FLTAIYADNNSLKKLPDL-------PLSLESIVAGNNILE  228 (454)
T ss_dssp             TCCEEECCSSCCSSCCCC-------CTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCCcCCCC-------cCcccEEECcCCcCC
Confidence            777777777777766541       246777777777554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=3.9e-11  Score=98.20  Aligned_cols=121  Identities=20%  Similarity=0.159  Sum_probs=84.2

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCC----cCCcccccCCCCccEEEccCCccCccccc-
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIK----NVDKNMFTNFPNLKILYLHKNQIEEYLSV-  125 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-  125 (210)
                      .+++|+.|++++|.++... +..+.+..+..+++|+.|++++|.++    ...+..+..+++|+.|++++|.++..... 
T Consensus       185 ~~~~L~~L~L~~n~l~~~g-~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEG-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHH-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhH-HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            4556889999998887321 01111136677788999999999884    22223467788999999999998775310 


Q ss_pred             --ccc--ccCCCcCEEeeeCCCCCC-----ccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         126 --FVL--RRVNSLRTLSLYGNPIEK-----IREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       126 --~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                        ..+  +.+++|+.|++++|.+..     ++.   .....+++|+.|++++|.+.+..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---HHHhcCCCceEEEccCCcCCcch
Confidence              223  337889999999999887     444   23366899999999998876544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.11  E-value=2.8e-10  Score=98.79  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=19.0

Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccc
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYL  123 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~  123 (210)
                      ++|+.|++++|+++.++..    +++|+.|++++|.++.++
T Consensus       121 ~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~  157 (622)
T 3g06_A          121 SGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP  157 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCC
T ss_pred             CCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcC
Confidence            4455555555555554432    245555566655555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.11  E-value=6.3e-11  Score=94.91  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=89.6

Q ss_pred             CCCCCccEEEccCCccccc-cCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLV-YGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFV  127 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~-~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~  127 (210)
                      ..+++|+.|++++|.++.. .+      ..+..+++|+.|++++|.++...+..+..+++|+.|++++| .++...-...
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~------~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~  163 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLH------GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL  163 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHH------HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             ccCCCCCEEEccCCCcCHHHHH------HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence            5678899999999998753 21      66788899999999999988665556788999999999999 6775321145


Q ss_pred             cccCCCcCEEeeeCC-CCCCc--cchHHHHHHhCc-CcccccCCCCC
Q psy4162         128 LRRVNSLRTLSLYGN-PIEKI--REYRAVVSTMIP-QLVTLDSVFIL  170 (210)
Q Consensus       128 ~~~l~~L~~L~l~~n-~l~~~--~~~~~~~l~~l~-~L~~L~l~~~~  170 (210)
                      +..+++|+.|++++| .+++.  +.    .+..++ +|+.|++++|.
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQV----AVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHH----HHHHSCTTCCEEECCSCG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHH----HHHhcccCCCEEEeCCCc
Confidence            778999999999999 88753  33    688899 99999999994

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.10  E-value=2.3e-11  Score=97.53  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=37.9

Q ss_pred             cCCCCCCCEEECcCC-CCCcC-CcccccCCC-CccEEEccCCc--cCc--cccccccccCCCcCEEeeeCCC-CCCccch
Q psy4162          79 ILDPDLIGWIDLSFN-NIKNV-DKNMFTNFP-NLKILYLHKNQ--IEE--YLSVFVLRRVNSLRTLSLYGNP-IEKIREY  150 (210)
Q Consensus        79 ~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~~~-~L~~L~l~~n~--i~~--~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~  150 (210)
                      +..+++|+.|++++| .++.. .+..+..++ +|+.|++++|.  ++.  ++  ..+..+++|+.|++++|. +++... 
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~-  240 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSDSVMLKNDCF-  240 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTTCTTCCGGGG-
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--HHHhhCCCCCEEeCCCCCcCCHHHH-
Confidence            334445555555555 44432 112233444 55555555552  221  11  223445555555555555 332111 


Q ss_pred             HHHHHHhCcCcccccCCCC
Q psy4162         151 RAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       151 ~~~~l~~l~~L~~L~l~~~  169 (210)
                        ..+..+++|+.|++++|
T Consensus       241 --~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          241 --QEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             --GGGGGCTTCCEEECTTC
T ss_pred             --HHHhCCCCCCEeeCCCC
Confidence              13455555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.08  E-value=3.9e-11  Score=98.26  Aligned_cols=118  Identities=17%  Similarity=0.097  Sum_probs=72.0

Q ss_pred             CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCc-----CCcccccCCCCccEEEccCCccC-----cc
Q psy4162          53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKN-----VDKNMFTNFPNLKILYLHKNQIE-----EY  122 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~~~L~~L~l~~n~i~-----~~  122 (210)
                      ++|+.|++++|+++.... ..+ ...+..+++|+.|++++|+++.     +.+..+..+++|+.|++++|.++     .+
T Consensus       159 ~~L~~L~L~~n~l~~~~~-~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSM-KEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSCCTGGGH-HHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHH-HHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence            556666666666542110 000 0244556677888888877762     22213666778888888888874     23


Q ss_pred             ccccccccCCCcCEEeeeCCCCCCccchH-HHHHHh--CcCcccccCCCCCHHHH
Q psy4162         123 LSVFVLRRVNSLRTLSLYGNPIEKIREYR-AVVSTM--IPQLVTLDSVFILPSEK  174 (210)
Q Consensus       123 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~--l~~L~~L~l~~~~~~~~  174 (210)
                      +  ..+..+++|+.|++++|.+....... ...+..  +++|+.|++++|.+...
T Consensus       237 ~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          237 A--IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             H--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             H--HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence            2  44667788888888888877552210 113433  78888888888887663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=4.3e-10  Score=90.21  Aligned_cols=83  Identities=17%  Similarity=0.029  Sum_probs=48.4

Q ss_pred             CCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcC-EEeeeCCCCCCccchHHHHHHhCcC
Q psy4162          82 PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR-TLSLYGNPIEKIREYRAVVSTMIPQ  160 (210)
Q Consensus        82 l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~  160 (210)
                      +++|+.+++++|+++.++...|..+.+|+.+++..| ++.+++ ..|.++.+|+ .+.+.+ .+..++.   .++.++++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~---~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEF---GAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECT---TTTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEch---hhhhCCcc
Confidence            455666666666666666665666666666666655 555554 5566666666 666655 5555544   35566666


Q ss_pred             cccccCCCCC
Q psy4162         161 LVTLDSVFIL  170 (210)
Q Consensus       161 L~~L~l~~~~  170 (210)
                      |+.+++.++.
T Consensus       299 L~~l~l~~n~  308 (329)
T 3sb4_A          299 LRYVLATGDK  308 (329)
T ss_dssp             EEEEEECSSC
T ss_pred             CCEEEeCCCc
Confidence            6666654443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=3.4e-10  Score=90.81  Aligned_cols=103  Identities=17%  Similarity=0.117  Sum_probs=95.3

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCcc-EEEccCCccCcccccccccc
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLK-ILYLHKNQIEEYLSVFVLRR  130 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~  130 (210)
                      +.+|+.+++++|.++.++.      ..|.++.+|+.+++++| ++.++...|..+.+|+ .+.+.. .++.+++ ..|.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMG  295 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTT
T ss_pred             cCCCeEEECCCCCcceecH------hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhC
Confidence            8899999999999999998      99999999999999998 9999999999999999 999988 8888886 89999


Q ss_pred             CCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccC
Q psy4162         131 VNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDS  166 (210)
Q Consensus       131 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l  166 (210)
                      +++|+.+++++|.+..++.   .++.++++|+.+..
T Consensus       296 c~~L~~l~l~~n~i~~I~~---~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          296 CDNLRYVLATGDKITTLGD---ELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTEEEEEECSSCCCEECT---TTTCTTCCCCEEEC
T ss_pred             CccCCEEEeCCCccCccch---hhhcCCcchhhhcc
Confidence            9999999999999999987   57999999988754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.98  E-value=8.4e-10  Score=85.97  Aligned_cols=109  Identities=22%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             EEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc--ccccCCCCccEEEccCCccCccccccccccCCCcC
Q psy4162          58 LWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR  135 (210)
Q Consensus        58 L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  135 (210)
                      ++++.|....++.+-.   .....+++|+.|+|++|+++.+..  ..+..+++|+.|+|++|.++++..+..+..+ +|+
T Consensus       148 l~l~~N~~~~~~~~l~---i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~  223 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLR---IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLE  223 (267)
T ss_dssp             CCCCTTSHHHHHHHHH---HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCS
T ss_pred             ccccCCHHHHHHHHHH---HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-Ccc
Confidence            5666776555442111   222456899999999999998764  3355799999999999999998665666666 999


Q ss_pred             EEeeeCCCCCC----ccchHHHHHHhCcCcccccCCCCC
Q psy4162         136 TLSLYGNPIEK----IREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       136 ~L~l~~n~l~~----~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      .|++++|++.+    .+.|+...+..+|+|+.||....+
T Consensus       224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~  262 (267)
T 3rw6_A          224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP  262 (267)
T ss_dssp             EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred             eEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence            99999999985    346788889999999999987764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.97  E-value=1.7e-10  Score=96.23  Aligned_cols=118  Identities=14%  Similarity=0.010  Sum_probs=80.7

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccCccccccc
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSVFV  127 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~  127 (210)
                      +++|+.|++++|.++.... ..+........++|+.|++++|.++...    +..+..+++|+.|++++|.+..... ..
T Consensus       283 ~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~  360 (461)
T 1z7x_W          283 KESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV-RE  360 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-HH
T ss_pred             CCCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH-HH
Confidence            5668888888888765321 1111112223358888888888887653    2234557889999999998877542 33


Q ss_pred             ccc-----CCCcCEEeeeCCCCCC-----ccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         128 LRR-----VNSLRTLSLYGNPIEK-----IREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       128 ~~~-----l~~L~~L~l~~n~l~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      +..     .++|+.|++++|.+++     ++.    .+..+++|+.|++++|.+.+..
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA----TLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCCCCCEEECCSSSCCHHH
T ss_pred             HHHHHcCCCCceEEEECCCCCCChhhHHHHHH----HHHhCCCccEEECCCCCCCHHH
Confidence            322     6789999999999884     333    6778999999999999876654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=93.52  Aligned_cols=160  Identities=17%  Similarity=0.073  Sum_probs=100.3

Q ss_pred             CcceeCCCCCccccchhhhccc----CCcccccCCCCCC--------C-CCCCCccEEEccCCccccccCCchhhhhcc-
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKL----KPNVHRLGESPPM--------L-VGRYDTRSLWLSHNKISLVYGLDSLVHRTI-   79 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l----~~~~~~~~~~~~~--------~-~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~-   79 (210)
                      ...|++++|.++......+..+    ...+..+.+....        . ..+.+|+.|++++|.++.... ..+. ..+ 
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~-~~L~  151 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLR-DLLL  151 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHH-HHHH
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHH-HHHH
Confidence            4568888888876555443321    0111122222211        0 335568888888888876432 1111 122 


Q ss_pred             CCCCCCCEEECcCCCCCcCCcc----cccCCCCccEEEccCCccCcccc---ccccccCCCcCEEeeeCCCCCCccch-H
Q psy4162          80 LDPDLIGWIDLSFNNIKNVDKN----MFTNFPNLKILYLHKNQIEEYLS---VFVLRRVNSLRTLSLYGNPIEKIREY-R  151 (210)
Q Consensus        80 ~~l~~L~~L~Ls~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~-~  151 (210)
                      ...+.|+.|++++|.++.....    .+..+++|+.|++++|.+.....   ...+...++|+.|++++|.+++.... -
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            3457899999999988764322    23567889999999999876431   03456678899999999999865321 1


Q ss_pred             HHHHHhCcCcccccCCCCCHHHHH
Q psy4162         152 AVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       152 ~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      ...+...++|+.||+++|.+.+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHH
Confidence            134667889999999999876544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.95  E-value=8.6e-10  Score=91.93  Aligned_cols=122  Identities=16%  Similarity=0.038  Sum_probs=59.2

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccCccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSV  125 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~  125 (210)
                      ..+++|+.|++++|.++.... ..+....+...++|+.|++++|+++...    +..+..+++|+.|++++|.+..... 
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-  187 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-  187 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-
T ss_pred             ccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-
Confidence            455567777777777654321 0111111222345666666666665532    1223345566666666666554331 


Q ss_pred             cccc-----cCCCcCEEeeeCCCCCCccch-HHHHHHhCcCcccccCCCCCHHH
Q psy4162         126 FVLR-----RVNSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       126 ~~~~-----~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      ..+.     ..++|+.|++++|.+...... -...+..+++|+.|++++|.+.+
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            2221     234566666666665543110 00134555666666666655433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.86  E-value=6e-10  Score=91.08  Aligned_cols=119  Identities=13%  Similarity=-0.020  Sum_probs=81.9

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccc-----cCCCCccEEEccCCccCccccc-
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMF-----TNFPNLKILYLHKNQIEEYLSV-  125 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~~-  125 (210)
                      ..+|+.|+|++|.++.... .    .....+.+|+.|++++|.++......+     ...++|+.|++++|.++..... 
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~-~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  174 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGL-R----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV  174 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHH-H----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHH-H----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence            3688999999998865321 0    122233578999999998876543322     2467899999999998764320 


Q ss_pred             --cccccCCCcCEEeeeCCCCCCccch-HHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         126 --FVLRRVNSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       126 --~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                        ..+...++|+.|+|++|.+.+.... -...+...++|+.|++++|.+.+..
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence              2346788899999999998764321 1134667789999999999886644

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=6.6e-08  Score=71.18  Aligned_cols=123  Identities=15%  Similarity=0.081  Sum_probs=90.1

Q ss_pred             CCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccc-
Q psy4162          51 GRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLS-  124 (210)
Q Consensus        51 ~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~-  124 (210)
                      ..++|+.|+|++| .+..... ..+. ..+...++|+.|+|++|.+.....    ..+...++|+.|++++|.|..... 
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~-~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTL-KACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHH-HHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHH-HHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            3456999999999 8876321 1111 556667899999999999976432    224456889999999999987531 


Q ss_pred             --ccccccCCCcCEEee--eCCCCCCccch-HHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         125 --VFVLRRVNSLRTLSL--YGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       125 --~~~~~~l~~L~~L~l--~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                        ...+...+.|+.|++  ++|.+...... -...+...++|+.|++++|.+....
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence              134667789999999  88999864321 1235777899999999999987654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.56  E-value=8.2e-08  Score=79.16  Aligned_cols=153  Identities=7%  Similarity=0.082  Sum_probs=104.5

Q ss_pred             cceeCCCCCccccchhhhcccCC-cc--cccCCCCCC---CCCCCCccEEEccCCccc-----cccCCchhhhhccCCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP-NV--HRLGESPPM---LVGRYDTRSLWLSHNKIS-----LVYGLDSLVHRTILDPD   83 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~-~~--~~~~~~~~~---~~~l~~L~~L~ls~n~l~-----~~~~l~~~~~~~~~~l~   83 (210)
                      ..+++.. +++.+....|.+ .+ ..  +..++..+.   +.++.+|+.+.+.+|.+.     .++.      ..|.+++
T Consensus       229 ~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~------~aF~~c~  300 (401)
T 4fdw_A          229 KTIEIPE-NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP------YCLEGCP  300 (401)
T ss_dssp             CCEECCT-TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT------TTTTTCT
T ss_pred             CEEecCC-CccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH------HHhhCCc
Confidence            3466654 366676666653 11 10  111122222   377888999998887766     5555      8888899


Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCc-Ccc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIP-QLV  162 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~L~  162 (210)
                      +|+.+.+. +.++.+....|..|.+|+.+.+..+ ++.++. ..|.++ +|+.+.+.+|.+..+..   ..+..++ .++
T Consensus       301 ~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~~l~~---~~F~~~~~~l~  373 (401)
T 4fdw_A          301 KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPPQVFE---KVWYGFPDDIT  373 (401)
T ss_dssp             TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCCBCCC---SSCCCSCTTCC
T ss_pred             cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCccccc---ccccCCCCCcc
Confidence            99999998 5588888888888999999998554 777775 778888 89999999988776655   3566664 577


Q ss_pred             cccCCCCCHHHHHHHHHHHH
Q psy4162         163 TLDSVFILPSEKQETNALNA  182 (210)
Q Consensus       163 ~L~l~~~~~~~~~~~~~~~~  182 (210)
                      .|.+..+.......+..|..
T Consensus       374 ~l~vp~~~~~~y~~a~~W~~  393 (401)
T 4fdw_A          374 VIRVPAESVEKYKNANGWRD  393 (401)
T ss_dssp             EEEECGGGHHHHHHSTTGGG
T ss_pred             EEEeCHHHHHHhhhccchhh
Confidence            77777766555554444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=5.2e-08  Score=75.83  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCC--CccEEEccCCccCcccc-----
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFP--NLKILYLHKNQIEEYLS-----  124 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~-----  124 (210)
                      +++|+.|+|++|.|+.++++.    ..+..+++|+.|+|++|+++++..  +..+.  +|+.|++.+|.+....+     
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~----~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMS----SIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGT----THHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             CCCCCEEECCCCCCCCCccch----hHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCccccCcchhH
Confidence            445999999999999987543    345567999999999999998733  34344  99999999999975211     


Q ss_pred             -ccccccCCCcCEEe
Q psy4162         125 -VFVLRRVNSLRTLS  138 (210)
Q Consensus       125 -~~~~~~l~~L~~L~  138 (210)
                       ...+..+|+|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence             02367889999887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.44  E-value=3.1e-07  Score=75.67  Aligned_cols=142  Identities=11%  Similarity=0.044  Sum_probs=105.8

Q ss_pred             cceeCCCCCccccchhhhcccCC-ccccc--CCCCCC---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRL--GESPPM---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~--~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ..+.+. +.++.+....|.+.++ ..+.+  ++..+.   +.+ .+|+.+.+ .+.++.+..      ..|.++.+|+.+
T Consensus       206 ~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~------~aF~~c~~L~~l  276 (401)
T 4fdw_A          206 EEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-PNGVTNIAS------RAFYYCPELAEV  276 (401)
T ss_dssp             SEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-ETTCCEECT------TTTTTCTTCCEE
T ss_pred             CEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-CCCccEECh------hHhhCCCCCCEE
Confidence            346666 4478888877765444 11111  222222   244 67888888 566778876      899999999999


Q ss_pred             ECcCCCCC-----cCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162          89 DLSFNNIK-----NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus        89 ~Ls~n~i~-----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      .+.+|.+.     .++...|..|.+|+.+.+. +.++.++. ..|.++.+|+.+.+..+ +..+..   .++..+ +|+.
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~~I~~---~aF~~~-~L~~  349 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VTQINF---SAFNNT-GIKE  349 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CCEECT---TSSSSS-CCCE
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-ccEEcH---HhCCCC-CCCE
Confidence            99988776     6788889999999999998 55888886 88999999999999554 777766   478888 8999


Q ss_pred             ccCCCCCHH
Q psy4162         164 LDSVFILPS  172 (210)
Q Consensus       164 L~l~~~~~~  172 (210)
                      +++.++...
T Consensus       350 l~l~~n~~~  358 (401)
T 4fdw_A          350 VKVEGTTPP  358 (401)
T ss_dssp             EEECCSSCC
T ss_pred             EEEcCCCCc
Confidence            999887643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=3e-07  Score=66.93  Aligned_cols=83  Identities=11%  Similarity=0.071  Sum_probs=47.4

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC-CCcCCcccccCC----CCccEEEccCCc-cCccccccc
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN-IKNVDKNMFTNF----PNLKILYLHKNQ-IEEYLSVFV  127 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~  127 (210)
                      .|+.||++++.|+...-      ..+..+++|+.|+|++|. ++...-..+..+    ++|+.|++++|. |++.. +..
T Consensus        62 ~L~~LDLs~~~Itd~GL------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~  134 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIA  134 (176)
T ss_dssp             CEEEEEEESCCCCGGGG------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHH
T ss_pred             eEeEEeCcCCCccHHHH------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHH
Confidence            36777777776655332      445566667777776663 544322223332    356666666653 65554 345


Q ss_pred             cccCCCcCEEeeeCCC
Q psy4162         128 LRRVNSLRTLSLYGNP  143 (210)
Q Consensus       128 ~~~l~~L~~L~l~~n~  143 (210)
                      +..+++|+.|++++++
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            5566666666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.24  E-value=1.2e-06  Score=75.11  Aligned_cols=59  Identities=19%  Similarity=0.106  Sum_probs=35.0

Q ss_pred             CCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162         105 NFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus       105 ~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      .+++|+.++++.+....++  ..+..+++|+.|++++|.+.....  ...+..+++|+.|++.
T Consensus       268 ~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMP--ILFPFAAQIRKLDLLYALLETEDH--CTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGG--GGGGGGGGCCEEEETTCCCCHHHH--HHHHTTCTTCCEEEEE
T ss_pred             ccccccccCccccchhHHH--HHHhhcCCCcEEecCCCcCCHHHH--HHHHHhCcCCCEEecc
Confidence            3444555555444333333  335567788888888888553321  0246778888888887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.22  E-value=4.9e-07  Score=77.52  Aligned_cols=106  Identities=21%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             CccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccc----cCCCCccEEEccCCccCcccc--c-
Q psy4162          54 DTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMF----TNFPNLKILYLHKNQIEEYLS--V-  125 (210)
Q Consensus        54 ~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~~~~L~~L~l~~n~i~~~~~--~-  125 (210)
                      +|+.|++++| .++... +    +..+..+++|+.|++++|.++......+    ..+++|+.|++++|. ..+..  + 
T Consensus       131 ~L~~L~L~~~~~~~~~~-l----~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~  204 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDG-L----AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALE  204 (594)
T ss_dssp             TCCEEEEESCEEEEHHH-H----HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred             CCcEEeCCCcCCCCHHH-H----HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence            3666666665 333310 0    0223345666666666666554332212    244566666666664 11110  0 


Q ss_pred             cccccCCCcCEEeeeCC-CCCCccchHHHHHHhCcCcccccCCCC
Q psy4162         126 FVLRRVNSLRTLSLYGN-PIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       126 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      .....+++|+.|++++| .+.+++.    .+..+++|+.|++..+
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHH----HHHHCTTCSEEECSBC
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHH----HHhcCCcceEcccccc
Confidence            11233566666666666 2222222    4555666666654433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.20  E-value=4.2e-06  Score=71.72  Aligned_cols=107  Identities=15%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE---------------------------CcCCCCCcCCccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID---------------------------LSFNNIKNVDKNM  102 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~---------------------------Ls~n~i~~~~~~~  102 (210)
                      ..+++|+.|++++|.+..++       ..+..+++|+.|+                           ++++....++. .
T Consensus       217 ~~~~~L~~L~L~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~  288 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILELV-------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-L  288 (592)
T ss_dssp             HHCTTCCEEECSSCBGGGGH-------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-G
T ss_pred             hhCCCCcEEeccCccHHHHH-------HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-H
Confidence            34566788888777766644       2233334444444                           43332223332 3


Q ss_pred             ccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCC
Q psy4162         103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus       103 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~  167 (210)
                      +..+++|+.|++++|.++.......+..+++|+.|+++ +.+....-  ......+++|+.|++.
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l--~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL--EVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH--HHHHHHCTTCCEEEEE
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH--HHHHHhCCCCCEEEee
Confidence            56678999999999987654421335788999999998 44432211  1245778999999998

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.19  E-value=3.8e-07  Score=78.17  Aligned_cols=117  Identities=12%  Similarity=0.015  Sum_probs=79.1

Q ss_pred             CCCCccEEEcc--C----CccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccC-CCCccEEEccCCccCccc
Q psy4162          51 GRYDTRSLWLS--H----NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTN-FPNLKILYLHKNQIEEYL  123 (210)
Q Consensus        51 ~l~~L~~L~ls--~----n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~L~~L~l~~n~i~~~~  123 (210)
                      .+++|+.|+++  +    +.++..+. ..-+...+..+++|+.|++++ .++......+.. +++|+.|++++|.+++..
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~  472 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPL-DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG  472 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCT-HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCch-hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence            46779999998  4    55654331 111113355678899999977 554433222333 788999999999987654


Q ss_pred             ccccc-ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         124 SVFVL-RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       124 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      . ..+ .++++|+.|++++|++++...  ......+++|+.|++++|+..
T Consensus       473 ~-~~l~~~~~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          473 M-HHVLSGCDSLRKLEIRDCPFGDKAL--LANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             H-HHHHHHCTTCCEEEEESCSCCHHHH--HHTGGGGGGSSEEEEESSCCB
T ss_pred             H-HHHHhcCCCcCEEECcCCCCcHHHH--HHHHHhCCCCCEEeeeCCCCC
Confidence            3 333 678999999999999943322  013456889999999999883

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=7.4e-07  Score=64.87  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=68.3

Q ss_pred             CCCCEEECcCCCCCcCCcccccCCCCccEEEccCCc-cCccccccccccC----CCcCEEeeeCCC-CCCccchHHHHHH
Q psy4162          83 DLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ-IEEYLSVFVLRRV----NSLRTLSLYGNP-IEKIREYRAVVST  156 (210)
Q Consensus        83 ~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~  156 (210)
                      ..|+.|+++++.++...-..+..+++|+.|+|++|. +++.. +..+..+    ++|+.|++++|. +++..-   ..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl---~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGI---IALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHH---HHGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHH---HHHh
Confidence            479999999999887766667889999999999995 77765 4566664    479999999986 664432   3578


Q ss_pred             hCcCcccccCCCCC
Q psy4162         157 MIPQLVTLDSVFIL  170 (210)
Q Consensus       157 ~l~~L~~L~l~~~~  170 (210)
                      .+++|+.|++++++
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            89999999999997

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.05  E-value=1.3e-06  Score=64.18  Aligned_cols=119  Identities=8%  Similarity=-0.004  Sum_probs=80.1

Q ss_pred             CcceeCCCC-CccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcC
Q psy4162          14 KIPLDLSFQ-QIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        14 ~~~L~ls~n-~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ...|++++| .+..-....+...-             ...++|+.|+|++|.|..-.. ..+. ..+...+.|+.|+|++
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L-------------~~~~~L~~L~Ls~n~i~~~g~-~~l~-~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEAL-------------KTNTYVKKFSIVGTRSNDPVA-FALA-EMLKVNNTLKSLNVES  102 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHH-------------TTCCSCCEEECTTSCCCHHHH-HHHH-HHHHHCSSCCEEECCS
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHH-------------HhCCCcCEEECcCCCCChHHH-HHHH-HHHHhCCCcCEEECcC
Confidence            455888888 88653332221100             012349999999999986321 1111 4455567899999999


Q ss_pred             CCCCcCC----cccccCCCCccEEEc--cCCccCcccc---ccccccCCCcCEEeeeCCCCCCc
Q psy4162          93 NNIKNVD----KNMFTNFPNLKILYL--HKNQIEEYLS---VFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        93 n~i~~~~----~~~~~~~~~L~~L~l--~~n~i~~~~~---~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      |.|....    ...+...++|+.|++  ++|.+.....   ...+...++|+.|++++|.+...
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            9998743    233566789999999  8899987542   03345668999999999988643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.87  E-value=4.2e-05  Score=62.05  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=80.0

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .++..|+.+.+..+ ++.+..      ..|..+..|+.+.+.. .+..+....|..+.+|+.+.+..+.++.+++ ..|.
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~------~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~  307 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGS------FLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFM  307 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECT------TTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTT
T ss_pred             cCCccceEEEcCCC-ccEeCc------cccceeehhccccccc-cceeccccccccccccccccccccccceehh-hhhc
Confidence            55667888888665 666665      7788888888888754 4777777778888888888888888888776 7788


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++.+|+.+.+..+ ++.+..   .++.++.+|+.+.+..
T Consensus       308 ~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          308 DCVKLSSVTLPTA-LKTIQV---YAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCTTCCEEECCTT-CCEECT---TTTTTCTTCCCCCCCT
T ss_pred             CCCCCCEEEcCcc-ccEEHH---HHhhCCCCCCEEEECC
Confidence            8888888888644 666766   3678888888877743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.81  E-value=6.9e-05  Score=61.24  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .++..|+.+.+..+. ..+..      ..|..+..|+.+.+. +.++.++...|..+.+|+.+.+..+ ++.++. ..|.
T Consensus       262 ~~c~~L~~i~lp~~~-~~I~~------~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~  331 (394)
T 4gt6_A          262 DSCAYLASVKMPDSV-VSIGT------GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFA  331 (394)
T ss_dssp             TTCSSCCEEECCTTC-CEECT------TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTT
T ss_pred             eecccccEEeccccc-ceecC------cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhh
Confidence            566778888886543 34554      778888889998885 5677888888888999999988754 777765 7888


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCC
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~  170 (210)
                      ++.+|+.+.+..+ +..+..   .++.++++|+.+++.++.
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~---~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPE---SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCG---GGGTTCTTCCEEEESSCH
T ss_pred             CCCCCCEEEECcc-cCEEhH---hHhhCCCCCCEEEECCce
Confidence            8899999998544 777766   478889999988887763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.71  E-value=1e-05  Score=65.75  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=53.7

Q ss_pred             CCCCCCEEECcC--CC------CCcCCcccc-cCCCCccEEEccCCccCcccc--ccccccCCCcCEEeeeCCCCCCccc
Q psy4162          81 DPDLIGWIDLSF--NN------IKNVDKNMF-TNFPNLKILYLHKNQIEEYLS--VFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        81 ~l~~L~~L~Ls~--n~------i~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      .+++|+.|+|+.  |.      +..+.+... ..+++|+.|+++.|.+.....  +.....+++|+.|+|+.|.+.+...
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            467788877753  11      111111101 246788888888887764321  1111346788888888888775421


Q ss_pred             hH-HHHHHhCcCcccccCCCCCHHHH
Q psy4162         150 YR-AVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       150 ~~-~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      .. ...+..+++|+.|+++.|.+.+.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhhcccCCcceEEECCCCcCCHH
Confidence            00 01235678888888888876544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.67  E-value=0.0002  Score=49.32  Aligned_cols=61  Identities=20%  Similarity=0.172  Sum_probs=45.7

Q ss_pred             CEEECcCCCCC--cCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch
Q psy4162          86 GWIDLSFNNIK--NVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY  150 (210)
Q Consensus        86 ~~L~Ls~n~i~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  150 (210)
                      ..++-+++.++  .++.. +  ..+++.|+|++|+|+.++. ..|..+++|+.|+|++|++......
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             CEEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCcc
Confidence            36777777777  66653 2  3467888888888888876 7788888888889999988876553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.65  E-value=8.9e-05  Score=60.09  Aligned_cols=99  Identities=12%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .++.+|+.+.+.. .++.+..      ..|.++.+|+.+.+..+.++.+....|..+.+|+.+.+..+ ++.++. .+|.
T Consensus       260 ~~~~~l~~i~l~~-~i~~i~~------~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~  330 (379)
T 4h09_A          260 QNCTALKTLNFYA-KVKTVPY------LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFK  330 (379)
T ss_dssp             TTCTTCCEEEECC-CCSEECT------TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTT
T ss_pred             ceeehhccccccc-cceeccc------cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhh
Confidence            6677899998864 4777776      88999999999999999999999989999999999999754 777775 8899


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCc
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQL  161 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L  161 (210)
                      ++.+|+.+.+..+ +..+..   .++.++.-+
T Consensus       331 ~C~~L~~i~ip~~-v~~I~~---~aF~~c~~~  358 (379)
T 4h09_A          331 NCKALSTISYPKS-ITLIES---GAFEGSSIT  358 (379)
T ss_dssp             TCTTCCCCCCCTT-CCEECT---TTTTTSSCC
T ss_pred             CCCCCCEEEECCc-cCEEch---hHhhCCCCC
Confidence            9999999998654 666655   356666433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.61  E-value=9.8e-05  Score=50.93  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=21.9

Q ss_pred             CCCEEECcCCCCCcCCcccccCCCCccEEEccCCcc
Q psy4162          84 LIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQI  119 (210)
Q Consensus        84 ~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i  119 (210)
                      +|+.|+|++|+|+.++...|..+++|+.|+|.+|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            456666666666666655556666666666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.59  E-value=9.4e-05  Score=60.42  Aligned_cols=104  Identities=14%  Similarity=0.056  Sum_probs=73.3

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+..++.+.+..+.   ++.      ..|..+..|+.+.+..+ ++.+....|..+.+|+.+.+.. .++.++. .+|.
T Consensus       273 ~~~~~l~~~~~~~~~---i~~------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~-~aF~  340 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVI---VPE------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGK-RSFR  340 (394)
T ss_dssp             TTCTTCCEEEECSSE---ECT------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECT-TTTT
T ss_pred             ccccccceeccCcee---ecc------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhH-Hhcc
Confidence            556667776665543   232      56777788888887654 7777777788888888888864 3667765 7788


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      ++.+|+.+.+..+ +..+..   .++.++++|+.+++..+
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGA---NAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECT---TTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECcc-ccEehH---HHhhCCCCCCEEEECCC
Confidence            8888888888766 666666   46788888888777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.49  E-value=8e-05  Score=60.43  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCccccc--CCCCccEEEccC--Cc------c
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFT--NFPNLKILYLHK--NQ------I  119 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~~L~~L~l~~--n~------i  119 (210)
                      ..+++|+.|.+++|.--.++       . +. +++|+.|++..+.+..-....+.  .+++|+.|+|..  |.      +
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~-------~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIG-------K-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCC-------S-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             hcCCCCcEEEEeCCCCceec-------c-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            55677888888777311222       1 22 57888888887776543222222  578888888753  22      1


Q ss_pred             CccccccccccCCCcCEEeeeCCCCCCccchHHHHHH---hCcCcccccCCCCCHHHH
Q psy4162         120 EEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVST---MIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       120 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~  174 (210)
                      ..+.+......+++|+.|++++|.+.....   ..+.   .+++|+.|+++.|.+.+.
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~---~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVV---EMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHH---HHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHH---HHHHhCccCCCCCEEECCCCCCChH
Confidence            112111111357899999999988875322   1333   477899999999887664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.49  E-value=0.0005  Score=56.09  Aligned_cols=105  Identities=10%  Similarity=0.078  Sum_probs=78.7

Q ss_pred             CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCcccccccc
Q psy4162          49 LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVL  128 (210)
Q Consensus        49 ~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  128 (210)
                      +.++.+|+.+.+. +.++.++.      ..|.++.+|+.+.+..+ ++.+....|..|.+|+.+.+..+ ++.++. .+|
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~-~aF  353 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPE------SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE-SAF  353 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG-GGG
T ss_pred             cccccccccccCC-CcccccCc------eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH-hHh
Confidence            3678889999995 66788887      89999999999999764 88888888999999999999654 888876 889


Q ss_pred             ccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162         129 RRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      .++.+|+.+++.++....      ..+..+..|+.+.+..+
T Consensus       354 ~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          354 SNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTCTTCCEEEESSCHHHH------HTCBCCCCC--------
T ss_pred             hCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCCC
Confidence            999999999998874321      13455666777766544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.44  E-value=0.00015  Score=59.18  Aligned_cols=99  Identities=12%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      .++.+|+.+.+..+ ++.+..      ..|.++.+|+.+++.. .++.+....|..+.+|+.+.+..+ ++.++. .+|.
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~------~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~  363 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGE------EAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQ  363 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECT------TTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBT
T ss_pred             cccccccccccccc-cceech------hhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhh
Confidence            56777888777654 666665      7788888888888864 377777777888888888888665 666665 7778


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCccc
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVT  163 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~  163 (210)
                      ++.+|+.+.+..+ +..+..    .+..+++|+.
T Consensus       364 ~C~~L~~i~lp~~-~~~~~~----~F~~c~~L~~  392 (394)
T 4fs7_A          364 GCINLKKVELPKR-LEQYRY----DFEDTTKFKW  392 (394)
T ss_dssp             TCTTCCEEEEEGG-GGGGGG----GBCTTCEEEE
T ss_pred             CCCCCCEEEECCC-CEEhhh----eecCCCCCcE
Confidence            8888888887654 333322    4555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.38  E-value=0.00046  Score=51.00  Aligned_cols=121  Identities=12%  Similarity=0.131  Sum_probs=83.9

Q ss_pred             CCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcc----cccCCCCccEEEccCCccCccccc--
Q psy4162          53 YDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKN----MFTNFPNLKILYLHKNQIEEYLSV--  125 (210)
Q Consensus        53 ~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~~--  125 (210)
                      +.|+.|+|++| .|..-. ...+. ..+..-..|+.|+|++|+|......    .+..-..|+.|+|+.|.|......  
T Consensus        41 ~~L~~L~L~~nn~igd~g-a~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKER-IRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHH-HHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHH-HHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            45999999986 776521 11111 5566668999999999999865432    233567899999999999876521  


Q ss_pred             -cccccCCCcCEEeeeCCC---CCCcc-chHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         126 -FVLRRVNSLRTLSLYGNP---IEKIR-EYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       126 -~~~~~l~~L~~L~l~~n~---l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                       ..+..-..|+.|+|++|.   +.... ..-...+..-++|..|++..+....+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~~  173 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARH  173 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHHH
Confidence             234556789999998764   33221 112246788899999999988876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.44  E-value=0.01  Score=43.72  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=66.3

Q ss_pred             hccCCCCCCCEEECcCC-CCCcCC----cccccCCCCccEEEccCCccCccccc---cccccCCCcCEEeeeCCCCCCcc
Q psy4162          77 RTILDPDLIGWIDLSFN-NIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSV---FVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus        77 ~~~~~l~~L~~L~Ls~n-~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                      ..+..-+.|+.|+|++| +|....    ...+..-..|+.|+|++|.+.+....   ..+..-+.|+.|+|++|.|....
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            44555678999999985 776532    22355678999999999999875531   23446689999999999998653


Q ss_pred             ch-HHHHHHhCcCcccccCCCC
Q psy4162         149 EY-RAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus       149 ~~-~~~~l~~l~~L~~L~l~~~  169 (210)
                      .. -...+..-++|+.|++.++
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCC
Confidence            31 1134566678999999754

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.78  E-value=1.6  Score=28.10  Aligned_cols=45  Identities=18%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeee
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLY  140 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~  140 (210)
                      .++.+....|..|.+|+.+.+..+ ++.+.. ..|.++.+|+.+.+.
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~   51 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILT   51 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEEC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEc
Confidence            344444444555555555555432 344443 445555555555554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=82.44  E-value=2.2  Score=27.41  Aligned_cols=50  Identities=18%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             CCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCc
Q psy4162          62 HNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQ  118 (210)
Q Consensus        62 ~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~  118 (210)
                      +..++.+..      ..|.++..|+.+.+.. .++.+....|..|.+|+.+.+....
T Consensus         5 g~~vt~I~~------~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDK------SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCS------CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecH------HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence            345666666      8899999999999976 4778888889999999999886653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-11
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (132), Expect = 9e-11
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILD----------PDLIGWIDLSFNNIKNVDKNM--- 102
           R L L+H  ++++  L+ L+  T LD          P L     L      +        
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLV 162
             N P L+ L L  N++++  ++  L     L  L+L GN + +    +  ++ M+P + 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 163 TLDS 166
           ++ +
Sbjct: 121 SILT 124

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 18  DLSFQQIQSLDKVAVQKLKPNVHRLGES----PPMLVGRYDTRSLWLSHNKISLVYGLDS 73
           +L  +Q++ L  +  ++   +   L        P LV +     L    +  + +  ++ 
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 74  LVHRTILDPDLIGWIDLSFNNIKNVD--KNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV 131
            +         +  ++LS N +  +D   ++    PNLKIL L  N+++         + 
Sbjct: 63  NIPE-------LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKG 114

Query: 132 NSLRTLSLYGNPIEKIRE----YRAVVSTMIPQLVTLDSVFILP 171
             L  L L GN +         Y + +    P+L+ LD   + P
Sbjct: 115 LKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPP 158

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 25/199 (12%)

Query: 1   MSEYYKTSIDPEFKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWL 60
           M++   T+I    +I  +         +KV +  + P + ++  +   L      + L L
Sbjct: 1   MAKA--TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK---ACKHLAL 55

Query: 61  SHNKISLVYGLDSLVHRTILDPDLIGWI-------------DLSFNNIKNVDKNMFTNFP 107
           S N I  +  L  + +  IL                     +L  +  +    +      
Sbjct: 56  STNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLV 115

Query: 108 NLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI-------REYRAVVSTMIPQ 160
           NL++LY+  N+I  +  +  L  ++ L  L L GNP+           EYR  V   +P 
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175

Query: 161 LVTLDSVFILPSEKQETNA 179
           L  LD + +   E+++ N 
Sbjct: 176 LKKLDGMPVDVDEREQANV 194

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 82  PDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYG 141
           P     +DL  N I  +    F N  NL  L L  N+I   +S      +  L  L L  
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 88

Query: 142 NPIEKIRE 149
           N ++++ E
Sbjct: 89  NQLKELPE 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 54  DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILY 113
           DT  L L +NKI+       +      +   +  + L  N I  +    F     L+ LY
Sbjct: 32  DTALLDLQNNKIT------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85

Query: 114 LHKNQIEE 121
           L KNQ++E
Sbjct: 86  LSKNQLKE 93

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 26/164 (15%)

Query: 17  LDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVH 76
           LDL   +I  +                    +        ++  S N+I  + G   L  
Sbjct: 23  LDLRGYKIPVI------------------ENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64

Query: 77  RTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRT 136
                   +  + ++ N I  + + +    P+L  L L  N + E   +  L  + SL  
Sbjct: 65  --------LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 137 LSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQETNAL 180
           L +  NP+   + YR  V   +PQ+  LD   +   E+QE   +
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 160

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 87  WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
            +++S N +  +        P L+ L    N + E     V     +L+ L +  NP+ +
Sbjct: 288 ELNVSNNKLIELPAL----PPRLERLIASFNHLAE-----VPELPQNLKQLHVEYNPLRE 338

Query: 147 I 147
            
Sbjct: 339 F 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 87  WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
                 N   N  +++    P+L+ L +  N++ E  ++        L  L    N + +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE 318

Query: 147 IREYRAVVSTMIPQLVTLD 165
           + E       +   L  L 
Sbjct: 319 VPE-------LPQNLKQLH 330

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 21/85 (24%)

Query: 56  RSLWLSHNKI-SLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYL 114
             L +S+NK+  L      L             +  SFN++  V +       NLK L++
Sbjct: 287 EELNVSNNKLIELPALPPRLER-----------LIASFNHLAEVPELP----QNLKQLHV 331

Query: 115 HKNQIEEYLSVFVLRRVNSLRTLSL 139
             N + E+  +       S+  L +
Sbjct: 332 EYNPLREFPDIP-----ESVEDLRM 351

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 87  WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK 146
           ++ L FNNI ++     ++   L+ L+   N++     V  L  + ++  LS   N I  
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHNQISD 365

Query: 147 I 147
           +
Sbjct: 366 L 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLH 115
           + L+ ++NK+S V  L +L +        I W+    N I ++      N   +  L L+
Sbjct: 332 QRLFFANNKVSDVSSLANLTN--------INWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 116 KN 117
             
Sbjct: 382 DQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 2/57 (3%)

Query: 87  WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNP 143
            +DL  N I        T    L  L +  N +     +     +      +   N 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNK 302

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 87  WIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGN 142
                 NN++ +  ++F       IL + + +I   L  + L  +  LR  S Y  
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNL 235

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 1e-04
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 88  IDLSFNNIKNVD-KNMFTNFPNLKILYLHKNQI-EEYLSVF--VLRRVNSLRTLSLYGNP 143
           +D+    + +     +       +++ L    + E         LR   +L  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 144 I 144
           +
Sbjct: 67  L 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 56  RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFTNFPNLK 110
           R LWL+   +S      SL    + +  L   +DLS N +       + +++      L+
Sbjct: 372 RVLWLADCDVSDS-SCSSLAATLLANHSLR-ELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 111 ILYLHKNQIEEYLSVF---VLRRVNSLRTLS 138
            L L+     E +      + +   SLR +S
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 87  WIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEE----YLSVFVLRRVNSLRTLS 138
            + L+  ++ +              +L+ L L  N + +     L   V +    L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 139 LYGNPI-EKIREYRAVVSTMIPQLVTL 164
           LY     E++ +    +    P L  +
Sbjct: 433 LYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 19/98 (19%)

Query: 56  RSLWLSHNKIS---LVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPN 108
           +SL +   ++S       L  L    ++         L    +         +     P 
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVR--------LDDCGLTEARCKDISSALRVNPA 56

Query: 109 LKILYLHKNQIE----EYLSVFVLRRVNSLRTLSLYGN 142
           L  L L  N++       +   +      ++ LSL   
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 74  LVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS 133
           L    +     +  + L+ NN+  +   +     NL  L L +N +      F     + 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--GSHL 196

Query: 134 LRTLSLYGNP 143
           L    L+GNP
Sbjct: 197 LPFAFLHGNP 206

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 59  WLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI-----KNVDKNMFTNFPNLKILY 113
            L+   +S       +   + L+   +  + L +N I     + +   +    P+L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 114 LHKNQIEE 121
           L+ N+  E
Sbjct: 309 LNGNRFSE 316

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.85
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.11
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.1
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.57
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.13

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.4e-21  Score=137.95  Aligned_cols=142  Identities=23%  Similarity=0.266  Sum_probs=126.9

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ...|++++|+|+.++.. +..+++                 |+.|++++|+|+.+++        +..+++|+.|++++|
T Consensus        20 lr~L~L~~n~I~~i~~~-~~~l~~-----------------L~~L~Ls~N~i~~l~~--------~~~l~~L~~L~ls~N   73 (162)
T d1a9na_          20 DRELDLRGYKIPVIENL-GATLDQ-----------------FDAIDFSDNEIRKLDG--------FPLLRRLKTLLVNNN   73 (162)
T ss_dssp             CEEEECTTSCCCSCCCG-GGGTTC-----------------CSEEECCSSCCCEECC--------CCCCSSCCEEECCSS
T ss_pred             CcEEECCCCCCCccCcc-cccccc-----------------CCEEECCCCCCCccCC--------cccCcchhhhhcccc
Confidence            45699999999999764 344566                 9999999999999864        667899999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++.+++..+..+++|+.|++++|.++.++.+..+..+++|+.+++++|+++..+.+|...++.+|+|+.||...+...|
T Consensus        74 ~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~e  153 (162)
T d1a9na_          74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  153 (162)
T ss_dssp             CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHH
Confidence            99999988778899999999999999998866778999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHHH
Q psy4162         174 KQETNALN  181 (210)
Q Consensus       174 ~~~~~~~~  181 (210)
                      +..++.++
T Consensus       154 r~~A~~~~  161 (162)
T d1a9na_         154 RQEAEKMF  161 (162)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            98887654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=7.5e-19  Score=120.56  Aligned_cols=121  Identities=23%  Similarity=0.337  Sum_probs=106.7

Q ss_pred             ceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCC
Q psy4162          16 PLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNI   95 (210)
Q Consensus        16 ~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i   95 (210)
                      .|++++|+|+.++..  ..++.                 |+.|++++|+|+.++       ..+..+++|+.|++++|++
T Consensus         2 ~L~Ls~n~l~~l~~l--~~l~~-----------------L~~L~ls~N~l~~lp-------~~~~~l~~L~~L~l~~N~i   55 (124)
T d1dcea3           2 VLHLAHKDLTVLCHL--EQLLL-----------------VTHLDLSHNRLRALP-------PALAALRCLEVLQASDNAL   55 (124)
T ss_dssp             EEECTTSCCSSCCCG--GGGTT-----------------CCEEECCSSCCCCCC-------GGGGGCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCCCccc--ccCCC-----------------CCEEECCCCccCcch-------hhhhhhhcccccccccccc
Confidence            589999999999864  45677                 999999999999987       5678889999999999999


Q ss_pred             CcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccc
Q psy4162          96 KNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        96 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L  164 (210)
                      +.++.  +..+++|+.+++++|+++.++.+..+..+++|+.+++++|+++..+.++......+|+|+.+
T Consensus        56 ~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          56 ENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cccCc--cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99865  88999999999999999998765678899999999999999998877776788889988765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.1e-17  Score=127.51  Aligned_cols=156  Identities=20%  Similarity=0.058  Sum_probs=116.3

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCc-------------
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLD-------------   72 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~-------------   72 (210)
                      |...+.|++++|+|+.++...|.++++ ..+.+.-..+.    ++.+++|+.|++++|+++..+...             
T Consensus        30 p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345678999999999999888877666 22222222222    277888899999988887654310             


Q ss_pred             ----hhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162          73 ----SLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus        73 ----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                          .+....+..+.+++.|++++|.++.+++..+..+++++.+++++|+++.+++ ..+..+++|+.|+|++|.++.+|
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc-cccccccccceeecccCCCcccC
Confidence                0112344555666677777777777777767778889999999999998885 77889999999999999999998


Q ss_pred             chHHHHHHhCcCcccccCCCCCH
Q psy4162         149 EYRAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus       149 ~~~~~~l~~l~~L~~L~l~~~~~  171 (210)
                      .    .+..+++|+.|++++|+.
T Consensus       189 ~----~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         189 K----GFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             T----TTTTTCCCSEEECCSCCB
T ss_pred             h----hHCCCCCCCEEEecCCCC
Confidence            7    567889999999999963

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=5.1e-18  Score=124.88  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCcccc-ccCCchhhhhccCCCCCCCEEECcC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISL-VYGLDSLVHRTILDPDLIGWIDLSF   92 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~l~~~~~~~~~~l~~L~~L~Ls~   92 (210)
                      ..+++.++++++++|....   ++                 ++.|+|++|+|+. ++.      ..|..+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp---~~-----------------l~~L~Ls~N~i~~~~~~------~~f~~l~~L~~L~L~~   63 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP---LH-----------------TTELLLNDNELGRISSD------GLFGRLPHLVKLELKR   63 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TT-----------------CSEEECCSCCCCSBCCS------CSGGGCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC---CC-----------------CCEEEeCCCCCcccccc------cccCCCceEeeeeccc
Confidence            3568999999999986432   34                 8888888888875 444      6677888888888888


Q ss_pred             CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162          93 NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus        93 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |++..+++..+..+++|+.|++++|+++.+++ ..|.++++|+.|+|++|.++.++.   ..+..+++|+.|++++|+..
T Consensus        64 N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~---~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          64 NQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMP---GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECT---TSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccccccccccccceeeeccccccccCH-HHHhCCCcccccccCCccccccCH---HHhcCCcccccccccccccc
Confidence            88888888778888888888888888888876 778888888888888888888766   46778888888888888754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.9e-17  Score=121.72  Aligned_cols=115  Identities=24%  Similarity=0.254  Sum_probs=105.2

Q ss_pred             CCCCcceeCCCCCccc-cchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          11 PEFKIPLDLSFQQIQS-LDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      |...+.|++++|+|+. ++...|.++++                 |+.|++++|.+..++.      ..|..++.|+.|+
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~-----------------L~~L~L~~N~i~~~~~------~~~~~~~~L~~L~   84 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPH-----------------LVKLELKRNQLTGIEP------NAFEGASHIQELQ   84 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTT-----------------CCEEECCSSCCCCBCT------TTTTTCTTCCEEE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCce-----------------Eeeeeccccccccccc------cccccccccceee
Confidence            3467789999999986 66777777777                 9999999999999987      8999999999999


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      +++|+++.+++..|..+++|+.|+|++|+|+.+++ +.|..+++|+++++++|++.+...
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCH-HHhcCCcccccccccccccccccc
Confidence            99999999999999999999999999999999987 889999999999999999998765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.62  E-value=1.6e-18  Score=128.25  Aligned_cols=139  Identities=27%  Similarity=0.404  Sum_probs=107.4

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      ..|++++|+|+.++.  +.++++                 |+.|++++|.|+.++++.       ..++.|+.|++++|+
T Consensus        51 ~~L~Ls~n~I~~i~~--l~~l~~-----------------L~~L~Ls~N~i~~i~~~~-------~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          51 KHLALSTNNIEKISS--LSGMEN-----------------LRILSLGRNLIKKIENLD-------AVADTLEELWISYNQ  104 (198)
T ss_dssp             CEEECSEEEESCCCC--HHHHTT-----------------CCEEECCEEEECSCSSHH-------HHHHHCCEEECSEEE
T ss_pred             ceeECcccCCCCccc--ccCCcc-----------------ccChhhcccccccccccc-------ccccccccccccccc
Confidence            346677777766654  334455                 999999999998887532       223578999999999


Q ss_pred             CCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc-------cchHHHHHHhCcCcccccCC
Q psy4162          95 IKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI-------REYRAVVSTMIPQLVTLDSV  167 (210)
Q Consensus        95 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~l~~L~~L~l~  167 (210)
                      ++.+++  +..+++|+.|++++|.++.++.+..+..+++|+.|++++|++...       +.||...+..+|+|+.||..
T Consensus       105 i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         105 IASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             CCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cccccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            988754  677889999999999998887556788899999999999987532       44666778999999999998


Q ss_pred             CCCHHHHHHHHHHH
Q psy4162         168 FILPSEKQETNALN  181 (210)
Q Consensus       168 ~~~~~~~~~~~~~~  181 (210)
                      .+...||..++.+.
T Consensus       183 ~I~~~er~~A~~~~  196 (198)
T d1m9la_         183 PVDVDEREQANVAR  196 (198)
T ss_dssp             GGTTTTTTHHHHHH
T ss_pred             cCCHHHHHHHHHhh
Confidence            88888888887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.2e-15  Score=104.23  Aligned_cols=104  Identities=20%  Similarity=0.271  Sum_probs=91.0

Q ss_pred             cEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcC
Q psy4162          56 RSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLR  135 (210)
Q Consensus        56 ~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  135 (210)
                      +.|++++|.++.+++        +..+++|++|++++|+++.+++. +..+++|+.|++++|.++.++.   +..+++|+
T Consensus         1 R~L~Ls~n~l~~l~~--------l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~---~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--------LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG---VANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSCCC--------GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCSSCC
T ss_pred             CEEEcCCCCCCCCcc--------cccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc---cccccccC
Confidence            579999999998875        45668999999999999999875 8889999999999999998863   78899999


Q ss_pred             EEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         136 TLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       136 ~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      .+++++|++..++..  ..+..+++|+.|++++|++.+
T Consensus        69 ~L~l~~N~i~~~~~~--~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          69 ELLLCNNRLQQSAAI--QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             EEECCSSCCCSSSTT--GGGGGCTTCCEEECTTSGGGG
T ss_pred             eEECCCCccCCCCCc--hhhcCCCCCCEEECCCCcCCc
Confidence            999999999987652  257889999999999998754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=108.94  Aligned_cols=112  Identities=22%  Similarity=0.183  Sum_probs=96.8

Q ss_pred             CCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccC
Q psy4162          52 RYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRV  131 (210)
Q Consensus        52 l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l  131 (210)
                      +..++.|++++|+|+.+++       .+..+++|+.|++++|+|+.++.  +..+++|+.|++++|.++.+++ ..+..+
T Consensus        17 ~~~lr~L~L~~n~I~~i~~-------~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~-~~~~~l   86 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGE-GLDQAL   86 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECS-CHHHHC
T ss_pred             cCcCcEEECCCCCCCccCc-------cccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCc-cccccc
Confidence            3349999999999999974       45667899999999999999864  8889999999999999999885 667789


Q ss_pred             CCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         132 NSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       132 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                      ++|+.|++++|.++.+++.  ..+..+++|+.|++++|++.+..
T Consensus        87 ~~L~~L~L~~N~i~~~~~l--~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDL--DPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGG--GGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccccceeccccccccccc--cccccccccchhhcCCCcccccc
Confidence            9999999999999988653  24789999999999999886644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3e-15  Score=116.08  Aligned_cols=144  Identities=20%  Similarity=0.195  Sum_probs=119.8

Q ss_pred             CCCCCccccchhhhcccCC-cccccCCCCC---C---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          19 LSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        19 ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      ...+.++.+++..+.++++ ..+.+.....   .   ...+.+|+.+++++|+++.++.      ..|..+++|+.|+++
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~------~~f~~~~~L~~L~l~  161 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD------DTFRDLGNLTHLFLH  161 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh------hHhccccchhhcccc
Confidence            4566777777777766655 2222222221   1   2567789999999999999987      788899999999999


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCH
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILP  171 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~  171 (210)
                      +|+++.+++..|..+++|+.+++++|++..+.+ ..+..+++|+.|++++|.+..++.   ..+..+++|+.|++++|+.
T Consensus       162 ~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT---EALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEEECCSSCE
T ss_pred             cCcccccchhhhccccccchhhhhhccccccCh-hHhhhhhhcccccccccccccccc---cccccccccCEEEecCCCC
Confidence            999999999889999999999999999999876 889999999999999999999887   5789999999999999976


Q ss_pred             H
Q psy4162         172 S  172 (210)
Q Consensus       172 ~  172 (210)
                      .
T Consensus       238 ~  238 (284)
T d1ozna_         238 V  238 (284)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.5e-15  Score=115.69  Aligned_cols=153  Identities=18%  Similarity=0.162  Sum_probs=121.2

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCC-cccccC----------------------------CCCCC---CCCCCCccEE
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRLG----------------------------ESPPM---LVGRYDTRSL   58 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~----------------------------~~~~~---~~~l~~L~~L   58 (210)
                      |...+.|++++|+|+.+++..|.++++ ..+.+.                            +....   ++++++|+.|
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            345567899999998888876666554 000000                            00111   2667889999


Q ss_pred             EccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEe
Q psy4162          59 WLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLS  138 (210)
Q Consensus        59 ~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  138 (210)
                      ++++|.+..++.      ..+..+..|+.+++++|+++.+++..|..+.+|+.|++++|.++.+++ ..+.++++|+.++
T Consensus       111 ~l~~n~~~~~~~------~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~  183 (284)
T d1ozna_         111 HLDRCGLQELGP------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLL  183 (284)
T ss_dssp             ECTTSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEE
T ss_pred             ecCCcccccccc------cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccccccchhh
Confidence            999999888776      777888899999999999999988888889999999999999999886 8889999999999


Q ss_pred             eeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         139 LYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       139 l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++|.+..+.+   ..+..+++|+.||++.|.+..
T Consensus       184 l~~N~l~~i~~---~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         184 LHQNRVAHVHP---HAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CCSSCCCEECT---TTTTTCTTCCEEECCSSCCSC
T ss_pred             hhhccccccCh---hHhhhhhhccccccccccccc
Confidence            99999998755   378999999999999988754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=7.6e-14  Score=108.93  Aligned_cols=157  Identities=20%  Similarity=0.128  Sum_probs=98.5

Q ss_pred             CCCCcceeCCCCCccccchhhhcccCC-ccccc---CCCCCC---CCCCCCccEEEccCCccccccCCc-----------
Q psy4162          11 PEFKIPLDLSFQQIQSLDKVAVQKLKP-NVHRL---GESPPM---LVGRYDTRSLWLSHNKISLVYGLD-----------   72 (210)
Q Consensus        11 ~~~~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~---~~~~~~---~~~l~~L~~L~ls~n~l~~~~~l~-----------   72 (210)
                      |...+.|++++|+|+.+++..|.++++ ..+.+   .+....   +..+..|+.|++++|+++.++...           
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            345677999999999999887777666 11122   122221   377899999999999988764410           


Q ss_pred             ----hhh--------------------------hhccCCCCCCCEEECcCCCCC---------------------cCCcc
Q psy4162          73 ----SLV--------------------------HRTILDPDLIGWIDLSFNNIK---------------------NVDKN  101 (210)
Q Consensus        73 ----~~~--------------------------~~~~~~l~~L~~L~Ls~n~i~---------------------~~~~~  101 (210)
                          .+.                          ...+..++.|+.+++++|.+.                     ...+.
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~  189 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  189 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChh
Confidence                000                          112333344444444444443                     33333


Q ss_pred             cccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         102 MFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       102 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      .+..++.++.|++++|.+.+.++ ..+.++++|+.|++++|+++.++.    .+..+++|+.|+++.|.+.
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~-~~~~~l~~L~~L~L~~N~L~~lp~----~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCSSCCC
T ss_pred             Hhhcccccccccccccccccccc-ccccccccceeeeccccccccccc----ccccccCCCEEECCCCccC
Confidence            45556666777777777766654 566677777777777777777765    5677777777777777643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=9e-14  Score=102.28  Aligned_cols=139  Identities=21%  Similarity=0.248  Sum_probs=97.3

Q ss_pred             cceeCCCCCccccchhhhcccCC-cccccCCCCCC----CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEE
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPPM----LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWID   89 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~   89 (210)
                      ..|++++|+++.++...  .+++ ..+.++-..+.    .+++++|+.|++++|.+..++        .+..++.|+.++
T Consensus        43 ~~L~l~~~~i~~l~~l~--~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~--------~l~~l~~L~~L~  112 (199)
T d2omxa2          43 TTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--------PLANLTNLTGLT  112 (199)
T ss_dssp             CEEECTTSCCCCCTTGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------GGTTCTTCSEEE
T ss_pred             CEEECCCCCCCCccccc--cCCCcCcCccccccccCcccccCCccccccccccccccccc--------cccccccccccc
Confidence            45888999888877643  3344 11111111111    256666777777777776654        256667888888


Q ss_pred             CcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCC
Q psy4162          90 LSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFI  169 (210)
Q Consensus        90 Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~  169 (210)
                      +++|.+..+.+  +..+++|+.+++++|++..++.   +..+++|+.|++.+|.++++++     +..+++|+.|++++|
T Consensus       113 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~---l~~~~~L~~L~l~~n~l~~l~~-----l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         113 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISA---LSGLTSLQQLNFSSNQVTDLKP-----LANLTTLERLDISSN  182 (199)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSS
T ss_pred             ccccccccccc--cchhhhhHHhhhhhhhhccccc---ccccccccccccccccccCCcc-----ccCCCCCCEEECCCC
Confidence            88887776654  6778888888888888876543   6678888888888888888765     678888999999888


Q ss_pred             CHHH
Q psy4162         170 LPSE  173 (210)
Q Consensus       170 ~~~~  173 (210)
                      ++.+
T Consensus       183 ~i~~  186 (199)
T d2omxa2         183 KVSD  186 (199)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.1e-14  Score=109.38  Aligned_cols=143  Identities=18%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCC---C---CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPP---M---LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~---~---~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      .++|.++++|+.+|.....++.  .+.+.-..+   .   +.++++|+.|++++|+|+.++.        +..+++|+.|
T Consensus        13 ~~v~C~~~~L~~iP~~lp~~l~--~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--------~~~l~~L~~L   82 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------DGTLPVLGTL   82 (266)
T ss_dssp             CEEECTTSCCSSCCSCCCTTCC--EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------CSCCTTCCEE
T ss_pred             eEEEccCCCCCeeCcCcCcCCC--EEECcCCcCCCcCHHHhhcccccccccccccccccccc--------cccccccccc
Confidence            4589999999999864322111  111111111   1   2667778888888887777653        3456778888


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|+++..+.. +..+++|+.|++++|.+..+.. ..+..+.++..|++++|.+..++.   ..+..++.++.+++++
T Consensus        83 ~Ls~N~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~---~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          83 DLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPP---GLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             ECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTT
T ss_pred             ccccccccccccc-cccccccccccccccccceeec-cccccccccccccccccccceecc---ccccccccchhccccc
Confidence            8888877776554 6677788888888887777765 666777888888888888887766   4567788888888888


Q ss_pred             CCHH
Q psy4162         169 ILPS  172 (210)
Q Consensus       169 ~~~~  172 (210)
                      |.+.
T Consensus       158 N~l~  161 (266)
T d1p9ag_         158 NNLT  161 (266)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            8754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.9e-13  Score=93.82  Aligned_cols=110  Identities=16%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ..++.+.+++.+.+.. +.++++                 |+.|++++| .++.++.      ..|.++++|+.|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~-l~~l~~-----------------l~~L~l~~n~~l~~i~~------~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          11 SGLRCTRDGALDSLHH-LPGAEN-----------------LTELYIENQQHLQHLEL------RDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSC-----------------CSEEECCSCSSCCEECG------GGSCSCCCCSEEECCSS
T ss_pred             CeEEecCCCCccCccc-ccCccc-----------------cCeeecCCCccccccCc------hhhccccccCcceeecc
Confidence            4477777777766543 333444                 999999766 5999887      88999999999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccch
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREY  150 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  150 (210)
                      +|+.+++..|..+++|+.|+|++|+++.++. ..+..+ +|+.|+|++|++.+....
T Consensus        67 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~~-~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTVQGL-SLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTTCSC-CCCEEECCSSCCCCCGGG
T ss_pred             ccCCcccccccccccccceeccCCCCcccCh-hhhccc-cccccccCCCcccCCchH
Confidence            9999998889999999999999999999885 666654 699999999999876653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=3.6e-13  Score=99.83  Aligned_cols=139  Identities=24%  Similarity=0.247  Sum_probs=88.8

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCCCCC---C-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGESPP---M-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWI   88 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~~~~---~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L   88 (210)
                      ...|+++.|.++.+....  .+++ ..+.+....+   . .+.+++|+.|++++|+++.++.        +..+++|+.|
T Consensus        48 L~~L~l~~~~i~~l~~l~--~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--------l~~l~~L~~L  117 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--------LKDLKKLKSL  117 (210)
T ss_dssp             CCEEECTTSCCCCCTTGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--------GTTCTTCCEE
T ss_pred             ccEEECcCCCCCCchhHh--hCCCCCEEeCCCccccCccccccCcccccccccccccccccc--------cccccccccc
Confidence            345888888888877643  3344 1111111111   1 2556667777777777776542        4555677777


Q ss_pred             ECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCC
Q psy4162          89 DLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVF  168 (210)
Q Consensus        89 ~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~  168 (210)
                      ++++|.+..++.  +..++.++.+++++|.++....   +..+++|+.+++++|.+.++++     +..+++|+.|++++
T Consensus       118 ~l~~~~~~~~~~--l~~l~~l~~l~~~~n~l~~~~~---~~~l~~L~~l~l~~n~l~~i~~-----l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         118 SLEHNGISDING--LVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK  187 (210)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             cccccccccccc--cccccccccccccccccccccc---cccccccccccccccccccccc-----ccCCCCCCEEECCC
Confidence            777776665543  5566667777777776665442   4567778888888888877654     66778888888887


Q ss_pred             CCHH
Q psy4162         169 ILPS  172 (210)
Q Consensus       169 ~~~~  172 (210)
                      |.+.
T Consensus       188 N~i~  191 (210)
T d1h6ta2         188 NHIS  191 (210)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-13  Score=96.48  Aligned_cols=107  Identities=10%  Similarity=0.004  Sum_probs=92.8

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC-CCCcCCcccccCCCCccEEEccCCccCccccccccccCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN-NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVN  132 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~  132 (210)
                      ..+.++.+++.+...+       ..+..+++|++|++++| .++.+++..|..+++|+.|++++|+++.+++ ..|.+++
T Consensus         9 ~~~~l~c~~~~~~~~p-------~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~   80 (156)
T d2ifga3           9 GSSGLRCTRDGALDSL-------HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTP   80 (156)
T ss_dssp             SSSCEECCSSCCCTTT-------TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCS
T ss_pred             CCCeEEecCCCCccCc-------ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccc
Confidence            3567888888888876       56778899999999876 5999999889999999999999999999986 8899999


Q ss_pred             CcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         133 SLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       133 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +|+.|+|++|.++.++.   ..+. ...|+.|++++|+..
T Consensus        81 ~L~~L~Ls~N~l~~l~~---~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALESLSW---KTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCSCCCS---TTTC-SCCCCEEECCSSCCC
T ss_pred             cccceeccCCCCcccCh---hhhc-cccccccccCCCccc
Confidence            99999999999999987   3444 446999999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1e-12  Score=96.54  Aligned_cols=139  Identities=19%  Similarity=0.180  Sum_probs=101.3

Q ss_pred             eeCCCCCccccchh-hhcccCCcc-cccCCCCCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          17 LDLSFQQIQSLDKV-AVQKLKPNV-HRLGESPPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        17 L~ls~n~l~~l~~~-~~~~l~~~~-~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ..++.+.++..... .+.++.... ...++..+. ...+++|+.|++++|+++.+++        +..+++|+.|++++|
T Consensus        23 ~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--------l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSS
T ss_pred             HHhCCCCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--------ccCCccccccccccc
Confidence            45666776665433 222222100 111222222 2668899999999999888753        677789999999999


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      .+..+++  +..++.|+.+++++|.+.....   +.++++|+.+++++|.+..++.     +..+++|+.|++.+|.+.+
T Consensus        95 ~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2          95 QIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCCCCGG--GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCC
T ss_pred             ccccccc--cccccccccccccccccccccc---cchhhhhHHhhhhhhhhccccc-----ccccccccccccccccccC
Confidence            9888775  7888999999999998877653   6788999999999999988765     7788999999999987654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.1e-12  Score=104.83  Aligned_cols=144  Identities=22%  Similarity=0.262  Sum_probs=81.3

Q ss_pred             CcceeCCCCCccccchhhhcccCC-cccccCC---CCCC-CCCCCCccEEEccCCccccccCCchhh-------------
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKP-NVHRLGE---SPPM-LVGRYDTRSLWLSHNKISLVYGLDSLV-------------   75 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~-~~~~~~~---~~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~-------------   75 (210)
                      ...+++++|.++.++...  .+++ ..+.+.-   .... ...+++|+.|++++++++.++++..+.             
T Consensus       221 L~~L~l~~n~l~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         221 LDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE  298 (384)
T ss_dssp             CCEEECCSSCCCCCGGGG--GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS
T ss_pred             CCEEECCCCCCCCcchhh--cccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccc
Confidence            456899999998876543  2233 1122221   2222 377888999999999888765421111             


Q ss_pred             -hhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHH
Q psy4162          76 -HRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVV  154 (210)
Q Consensus        76 -~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  154 (210)
                       ...+..++.++.|++++|+++.+.+  +..+++|+.|++++|.++.++   .+.++++|+.|++++|+++++++     
T Consensus       299 ~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~---~l~~l~~L~~L~l~~N~l~~l~~-----  368 (384)
T d2omza2         299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS---SLANLTNINWLSAGHNQISDLTP-----  368 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCBCGG-----
T ss_pred             cccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh---hHcCCCCCCEEECCCCcCCCChh-----
Confidence             0123444555666666666655543  455566666666666655543   24555666666666666665543     


Q ss_pred             HHhCcCcccccCCCC
Q psy4162         155 STMIPQLVTLDSVFI  169 (210)
Q Consensus       155 l~~l~~L~~L~l~~~  169 (210)
                      +..+++|+.|+++.|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            455566666665544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=2.2e-12  Score=95.51  Aligned_cols=106  Identities=25%  Similarity=0.293  Sum_probs=89.4

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+++|+.|++++|+++.+++        +..+++|+.|++++|+++.++.  +..+++|+.|++++|.+..++.   +.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~--------~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~~~~~~~~---l~  131 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKP--------LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING---LV  131 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCGG---GG
T ss_pred             hhCCCCCEEeCCCccccCccc--------cccCcccccccccccccccccc--cccccccccccccccccccccc---cc
Confidence            668889999999999988753        4677899999999999988764  7888999999999998877653   67


Q ss_pred             cCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +++.++.+++++|.+.+.+.     +..+++|+.+++++|.+.+
T Consensus       132 ~l~~l~~l~~~~n~l~~~~~-----~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         132 HLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCC
T ss_pred             cccccccccccccccccccc-----ccccccccccccccccccc
Confidence            88899999999999987764     6788999999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=1.5e-12  Score=97.40  Aligned_cols=62  Identities=23%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             ccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         103 FTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       103 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      +..+++|+.|++++|.+....+   +.++++|+.|++++|.+.++++     ++.+++|+.|++++|.+.
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~~l~~-----l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCCC
T ss_pred             hccccccccccccccccccchh---hcccccceecccCCCccCCChh-----hcCCCCCCEEECcCCcCC
Confidence            4456667777777777765543   5667777777777777777654     567777777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=2.7e-12  Score=99.95  Aligned_cols=116  Identities=22%  Similarity=0.148  Sum_probs=97.6

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLR  129 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  129 (210)
                      ..+++|+.|++++|.+....+      ..|..++.++.|++++|.+.++++..+..+++|+.|++++|.++.++  ..+.
T Consensus       168 ~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp--~~l~  239 (305)
T d1xkua_         168 GLPPSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP--GGLA  239 (305)
T ss_dssp             SCCTTCSEEECTTSCCCEECT------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC--TTTT
T ss_pred             ccCCccCEEECCCCcCCCCCh------hHhhccccccccccccccccccccccccccccceeeecccccccccc--cccc
Confidence            445679999999999998876      88899999999999999999998888899999999999999999886  5688


Q ss_pred             cCCCcCEEeeeCCCCCCccchHH---HHHHhCcCcccccCCCCCHHH
Q psy4162         130 RVNSLRTLSLYGNPIEKIREYRA---VVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       130 ~l~~L~~L~l~~n~l~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      .+++|+.|++++|+|+.++...+   .....+++|+.|++.+|+...
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            89999999999999998754100   123456789999999998543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=8.7e-12  Score=93.11  Aligned_cols=79  Identities=14%  Similarity=0.248  Sum_probs=44.5

Q ss_pred             cCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCccchHHHHHHhC
Q psy4162          79 ILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIREYRAVVSTMI  158 (210)
Q Consensus        79 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l  158 (210)
                      +..+++|+.|++++|.+....+  ++.+++|+.|++++|+++++++   +.++++|+.|++++|+++++++     +..+
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~~-----l~~l  216 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP-----LANT  216 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG-----GTTC
T ss_pred             hccccccccccccccccccchh--hcccccceecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCcc-----cccC
Confidence            3444555566665555554433  4556666666666666655442   4555666666666666665544     4556


Q ss_pred             cCcccccCC
Q psy4162         159 PQLVTLDSV  167 (210)
Q Consensus       159 ~~L~~L~l~  167 (210)
                      ++|+.|+++
T Consensus       217 ~~L~~L~ls  225 (227)
T d1h6ua2         217 SNLFIVTLT  225 (227)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEee
Confidence            666665553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=9.4e-14  Score=102.22  Aligned_cols=107  Identities=21%  Similarity=0.167  Sum_probs=90.0

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      +|+.|++++|.|+.+++        +..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.+++   +..+++
T Consensus        49 ~L~~L~Ls~n~I~~i~~--------l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~~---~~~l~~  116 (198)
T d1m9la_          49 ACKHLALSTNNIEKISS--------LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLSG---IEKLVN  116 (198)
T ss_dssp             TCCEEECSEEEESCCCC--------HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHHH---HHHHHH
T ss_pred             ccceeECcccCCCCccc--------ccCCccccChhhccccccccccc-cccccccccccccccccccccc---cccccc
Confidence            39999999999999865        44558999999999999988753 4445689999999999998753   678899


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHHHH
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPSEK  174 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  174 (210)
                      |+.|++++|.++.++..  ..+..+++|+.|++++|++.+.
T Consensus       117 L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccchhcccccc--ccccCCCccceeecCCCccccC
Confidence            99999999999988652  3588999999999999987554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=4.5e-11  Score=95.20  Aligned_cols=141  Identities=18%  Similarity=0.175  Sum_probs=100.5

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCC-----CCC-CCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCE
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGES-----PPM-LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGW   87 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~-----~~~-~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~   87 (210)
                      ...++++.|.++.+.+....  ++ ...+.+.     ... ...+.+|+.+++++|.++.+++        +..+++|+.
T Consensus       199 ~~~l~l~~n~i~~~~~~~~~--~~-L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~~~~~L~~  267 (384)
T d2omza2         199 LESLIATNNQISDITPLGIL--TN-LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--------LSGLTKLTE  267 (384)
T ss_dssp             CSEEECCSSCCCCCGGGGGC--TT-CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCSE
T ss_pred             cceeeccCCccCCCCccccc--CC-CCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--------ccccccCCE
Confidence            45589999999988765432  22 1112222     122 2778899999999999988754        455677777


Q ss_pred             EECcCCCCCcCCc--------------------ccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162          88 IDLSFNNIKNVDK--------------------NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        88 L~Ls~n~i~~~~~--------------------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      +++++++++.+.+                    ..+..+++++.|++++|.++++++   +..+++|+.|++++|+++++
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~---l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred             eeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc---cccCCCCCEEECCCCCCCCC
Confidence            7777777665432                    124556777888888888877653   67788999999999998887


Q ss_pred             cchHHHHHHhCcCcccccCCCCCHHH
Q psy4162         148 REYRAVVSTMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       148 ~~~~~~~l~~l~~L~~L~l~~~~~~~  173 (210)
                      +.     +..+++|+.|++++|.+.+
T Consensus       345 ~~-----l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         345 SS-----LANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             GG-----GGGCTTCCEEECCSSCCCB
T ss_pred             hh-----HcCCCCCCEEECCCCcCCC
Confidence            64     7788999999999887643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.11  E-value=3.9e-11  Score=93.63  Aligned_cols=129  Identities=15%  Similarity=0.146  Sum_probs=94.1

Q ss_pred             cceeCCCCCccccc--hhhhcccCCcccccCCCCCCCCCCCCccEEEccC-CccccccCCchhhhhccCCCCCCCEEECc
Q psy4162          15 IPLDLSFQQIQSLD--KVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSH-NKISLVYGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        15 ~~L~ls~n~l~~l~--~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      +.|++++++++...  +..+.++++                 |+.|++++ |.+.+..+      ..+..+++|+.|+++
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~-----------------L~~L~Ls~~N~l~g~iP------~~i~~L~~L~~L~Ls  109 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPY-----------------LNFLYIGGINNLVGPIP------PAIAKLTQLHYLYIT  109 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTT-----------------CSEEEEEEETTEESCCC------GGGGGCTTCSEEEEE
T ss_pred             EEEECCCCCCCCCCCCChHHhcCcc-----------------ccccccccccccccccc------cccccccccchhhhc
Confidence            34777777776421  123444555                 99999986 77774333      678888899999999


Q ss_pred             CCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC-ccchHHHHHHhCcCc-ccccCCCC
Q psy4162          92 FNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQL-VTLDSVFI  169 (210)
Q Consensus        92 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L-~~L~l~~~  169 (210)
                      +|++.++.+..+..+..|+.+++++|.+....+ ..+..++.++.+++++|.+.+ +|.    .+..+..+ +.++++.|
T Consensus       110 ~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~----~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSS
T ss_pred             cccccccccccccchhhhcccccccccccccCc-hhhccCcccceeecccccccccccc----ccccccccccccccccc
Confidence            999888887778888889999999888776654 678888889999999988874 444    46666665 66777766


Q ss_pred             CH
Q psy4162         170 LP  171 (210)
Q Consensus       170 ~~  171 (210)
                      ..
T Consensus       185 ~l  186 (313)
T d1ogqa_         185 RL  186 (313)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.5e-11  Score=89.27  Aligned_cols=112  Identities=18%  Similarity=0.219  Sum_probs=66.6

Q ss_pred             CCcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccc-cCCchhhhhccCCCCCCCEEECc
Q psy4162          13 FKIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLV-YGLDSLVHRTILDPDLIGWIDLS   91 (210)
Q Consensus        13 ~~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~l~~~~~~~~~~l~~L~~L~Ls   91 (210)
                      ..+.|++++|.|+.++...|.++++                 |+.|++++|.+... +.      ..|..++.++++.+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~-----------------L~~L~ls~n~~~~~i~~------~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGD-----------------LEKIEISQNDVLEVIEA------DVFSNLPKLHEIRIE   86 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTT-----------------CCEEEEESCTTCCEECS------SSEESCTTCCEEEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccch-----------------hhhhhhccccccceeec------ccccccccccccccc
Confidence            4566888888888777777766666                 77777777776553 33      456666666666654


Q ss_pred             C-CCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc
Q psy4162          92 F-NNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI  147 (210)
Q Consensus        92 ~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  147 (210)
                      . |.+...++..|..+++|+.+++++|.+...+....+..+..+..+...++.+..+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            3 4566666655666667777777666666554322233333333333344444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.10  E-value=8e-11  Score=91.78  Aligned_cols=143  Identities=14%  Similarity=-0.021  Sum_probs=96.4

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCC--------CCCCCCccEEEccCCccccccCCchhhhhccCCCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPM--------LVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLI   85 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~--------~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L   85 (210)
                      ...+++++|.++..-+..+..+......+......        ...+ ....++++++......+      ..+..++.+
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~------~~~~~~~~l  223 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS------VLFGSDKNT  223 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCG------GGCCTTSCC
T ss_pred             cceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc------ccccccccc
Confidence            35688999988754444333333311111111110        0222 23356666666665544      667778889


Q ss_pred             CEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCC-ccchHHHHHHhCcCcccc
Q psy4162          86 GWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEK-IREYRAVVSTMIPQLVTL  164 (210)
Q Consensus        86 ~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~L~~L  164 (210)
                      +.+++++|.+....+. +..+++|+.|++++|++++..+ ..++++++|+.|+|++|.+++ +|.     +..+++|+.+
T Consensus       224 ~~l~~~~~~l~~~~~~-~~~~~~L~~L~Ls~N~l~g~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~-----~~~L~~L~~l  296 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVS  296 (313)
T ss_dssp             SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSSEEEEECCC-----STTGGGSCGG
T ss_pred             cccccccccccccccc-cccccccccccCccCeecccCC-hHHhCCCCCCEEECcCCcccccCCC-----cccCCCCCHH
Confidence            9999999988776654 7778899999999999985443 668889999999999999884 554     5677888888


Q ss_pred             cCCCCC
Q psy4162         165 DSVFIL  170 (210)
Q Consensus       165 ~l~~~~  170 (210)
                      ++.+|+
T Consensus       297 ~l~~N~  302 (313)
T d1ogqa_         297 AYANNK  302 (313)
T ss_dssp             GTCSSS
T ss_pred             HhCCCc
Confidence            888886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.2e-10  Score=84.93  Aligned_cols=108  Identities=13%  Similarity=0.199  Sum_probs=89.5

Q ss_pred             cceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCC
Q psy4162          15 IPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNN   94 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~   94 (210)
                      ..++.+.++++.+|...+   .+                 ++.|++++|+|+.++.      ..|.++++|++|++++|.
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~-----------------l~~L~Ls~n~i~~l~~------~~f~~l~~L~~L~ls~n~   64 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RN-----------------AIELRFVLTKLRVIQK------GAFSGFGDLEKIEISQND   64 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SC-----------------CSEEEEESCCCCEECT------TTTTTCTTCCEEEEESCT
T ss_pred             CEEEEeCCCCCCcCCCCC---CC-----------------CCEEECcCCcCCccCh------hHhhccchhhhhhhcccc
Confidence            457788888888876432   35                 9999999999999987      789999999999999998


Q ss_pred             CCc-CCcccccCCCCccEEEccC-CccCccccccccccCCCcCEEeeeCCCCCCccc
Q psy4162          95 IKN-VDKNMFTNFPNLKILYLHK-NQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        95 i~~-~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      +.. +++..|..++.+..+.+.. |.+...++ ..+.++++|+.+++++|.+...+.
T Consensus        65 ~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          65 VLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             TCCEECSSSEESCTTCCEEEEECCTTCCEECT-TSEECCTTCCEEEEESCCCCSCCC
T ss_pred             ccceeecccccccccccccccccccccccccc-ccccccccccccccchhhhccccc
Confidence            765 5666788899999988764 67777775 778999999999999999886654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-11  Score=85.93  Aligned_cols=93  Identities=24%  Similarity=0.286  Sum_probs=75.5

Q ss_pred             hccCCCCCCCEEECcCCCCCcCCc--ccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCc----cch
Q psy4162          77 RTILDPDLIGWIDLSFNNIKNVDK--NMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKI----REY  150 (210)
Q Consensus        77 ~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~  150 (210)
                      ..+..+++|+.|++++|+|+.+.+  ..+..+++|+.|++++|.|+.++++..+. ...|+.+++++|++...    ..|
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhH
Confidence            344567899999999999998864  33567899999999999999998644444 45799999999999853    457


Q ss_pred             HHHHHHhCcCcccccCCCCC
Q psy4162         151 RAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       151 ~~~~l~~l~~L~~L~l~~~~  170 (210)
                      |..++..+|+|+.||....+
T Consensus       138 ~~~i~~~~P~L~~LDg~~v~  157 (162)
T d1koha1         138 ISAIRERFPKLLRLDGHELP  157 (162)
T ss_dssp             HHHHHTTSTTCCEETTEECC
T ss_pred             HHHHHHHCCCCCEECcCCCc
Confidence            88889999999999987653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.87  E-value=5.2e-09  Score=81.74  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=74.5

Q ss_pred             CcceeCCCCCccccchhhhcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          14 KIPLDLSFQQIQSLDKVAVQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      ..+||+++++++.+|..    .++                 |+.|++++|+|+.+|.       .   +.+|+.|++++|
T Consensus        40 l~~LdLs~~~L~~lp~~----~~~-----------------L~~L~Ls~N~l~~lp~-------~---~~~L~~L~l~~n   88 (353)
T d1jl5a_          40 AHELELNNLGLSSLPEL----PPH-----------------LESLVASCNSLTELPE-------L---PQSLKSLLVDNN   88 (353)
T ss_dssp             CSEEECTTSCCSCCCSC----CTT-----------------CSEEECCSSCCSSCCC-------C---CTTCCEEECCSS
T ss_pred             CCEEEeCCCCCCCCCCC----CCC-----------------CCEEECCCCCCccccc-------c---hhhhhhhhhhhc
Confidence            35699999999998853    255                 8999999999988874       1   357888889888


Q ss_pred             CCCcCCcccccCCCCccEEEccCCccCccccccccccCCCcCEEeeeCCCCCCcc
Q psy4162          94 NIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus        94 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                      +++.++.  +  .+.|+.|++++|.+..++.   ++.++.|+.+++++|.+...+
T Consensus        89 ~l~~l~~--l--p~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_          89 NLKALSD--L--PPLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CCSCCCS--C--CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccchhhh--h--ccccccccccccccccccc---hhhhccceeeccccccccccc
Confidence            8887754  2  2468889999998888764   456788888888888776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=1e-08  Score=79.96  Aligned_cols=95  Identities=19%  Similarity=0.136  Sum_probs=79.7

Q ss_pred             CccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccccccccCCC
Q psy4162          54 DTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSVFVLRRVNS  133 (210)
Q Consensus        54 ~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~  133 (210)
                      +++.|+++++.++.+|.          .+++|+.|++++|+|+.++..    ..+|+.|++++|+++.++.+     .+.
T Consensus        39 ~l~~LdLs~~~L~~lp~----------~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l-----p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE----------LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL-----PPL   99 (353)
T ss_dssp             TCSEEECTTSCCSCCCS----------CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC-----CTT
T ss_pred             CCCEEEeCCCCCCCCCC----------CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhh-----ccc
Confidence            38999999999999874          137899999999999998753    56899999999999887631     256


Q ss_pred             cCEEeeeCCCCCCccchHHHHHHhCcCcccccCCCCCHH
Q psy4162         134 LRTLSLYGNPIEKIREYRAVVSTMIPQLVTLDSVFILPS  172 (210)
Q Consensus       134 L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~  172 (210)
                      |+.|++++|.+..++.     ++.++.|+.|++.++...
T Consensus       100 L~~L~L~~n~l~~lp~-----~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLPE-----LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccc-----hhhhccceeecccccccc
Confidence            9999999999999987     567899999999887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-08  Score=72.19  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCCccCccccc----
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKNQIEEYLSV----  125 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~----  125 (210)
                      ..+++|+.|++++|+|+.+.++.    ..+..+++|+.|++++|.|+.+.+-.+.....|+.+++.+|.+......    
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~----~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMS----SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGG----THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhH----HHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            45778999999999999986533    4456679999999999999998774444556799999999999765320    


Q ss_pred             --cccccCCCcCEEe
Q psy4162         126 --FVLRRVNSLRTLS  138 (210)
Q Consensus       126 --~~~~~l~~L~~L~  138 (210)
                        ..+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2256789999886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2e-07  Score=71.36  Aligned_cols=89  Identities=17%  Similarity=0.098  Sum_probs=57.0

Q ss_pred             CCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCcccccCCCCccEEEccCC-ccCcccccccc
Q psy4162          50 VGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDKNMFTNFPNLKILYLHKN-QIEEYLSVFVL  128 (210)
Q Consensus        50 ~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~  128 (210)
                      .....|+.|+++++.++.-.-     ...+..+++|+.|+++++.++......+..+++|+.|+++++ .+++..-....
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l-----~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTL-----HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHH-----HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHH-----HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhh
Confidence            445568888888887764210     144666778888888888776544444666778888888774 45543210223


Q ss_pred             ccCCCcCEEeeeCCC
Q psy4162         129 RRVNSLRTLSLYGNP  143 (210)
Q Consensus       129 ~~l~~L~~L~l~~n~  143 (210)
                      .++++|+.|+++++.
T Consensus       118 ~~~~~L~~L~ls~c~  132 (284)
T d2astb2         118 SSCSRLDELNLSWCF  132 (284)
T ss_dssp             HHCTTCCEEECCCCT
T ss_pred             HHHHhcccccccccc
Confidence            457778888887753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.31  E-value=2.3e-07  Score=72.64  Aligned_cols=121  Identities=20%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             CCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccCcccccc
Q psy4162          51 GRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSVF  126 (210)
Q Consensus        51 ~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~  126 (210)
                      ....|+.|++++|.++.-. ........+..+++|+.|++++|.++...    ...+..+++|+.|++++|.+..... .
T Consensus       184 ~~~~L~~L~L~~n~i~~~g-~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~-~  261 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEG-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-A  261 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHH-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-H
T ss_pred             hhhhhcccccccccccccc-cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh-H
Confidence            3566888888888876521 11111144566788888999888875532    1235667888889999888876432 2


Q ss_pred             c----cc--cCCCcCEEeeeCCCCCCccchH-HHHH-HhCcCcccccCCCCCHHH
Q psy4162         127 V----LR--RVNSLRTLSLYGNPIEKIREYR-AVVS-TMIPQLVTLDSVFILPSE  173 (210)
Q Consensus       127 ~----~~--~l~~L~~L~l~~n~l~~~~~~~-~~~l-~~l~~L~~L~l~~~~~~~  173 (210)
                      .    +.  ..+.|+.|++++|.+....... ...+ ..+++|+.|++++|.+.+
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2    22  2357888999998877532110 1123 357788888998887644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.3e-07  Score=68.44  Aligned_cols=148  Identities=15%  Similarity=0.039  Sum_probs=77.8

Q ss_pred             CcceeCCCCCccccchh-hhcccCCcccccCCCCCC--------CCCCCCccEEEccCC-ccccccCCchhhhhccCCCC
Q psy4162          14 KIPLDLSFQQIQSLDKV-AVQKLKPNVHRLGESPPM--------LVGRYDTRSLWLSHN-KISLVYGLDSLVHRTILDPD   83 (210)
Q Consensus        14 ~~~L~ls~n~l~~l~~~-~~~~l~~~~~~~~~~~~~--------~~~l~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~   83 (210)
                      ...||++++.++.-... .+.+.++ ...+.+....        .+.+++|+.|+++++ .++... +.    ..+..++
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~~c~~-L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~-l~----~l~~~~~  121 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILSQCSK-LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-LQ----TLLSSCS  121 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCC-CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-HH----HHHHHCT
T ss_pred             CCEEECCCCccCHHHHHHHHHhCCC-cccccccccCCCcHHHHHHhcCCCCcCccccccccccccc-cc----hhhHHHH
Confidence            45689998887643222 2333343 2222222221        155667777777663 444311 00    2233456


Q ss_pred             CCCEEECcCC-CCCcC--CcccccCCCCccEEEccCC--ccCccccccccccCCCcCEEeeeCCC-CCCccchHHHHHHh
Q psy4162          84 LIGWIDLSFN-NIKNV--DKNMFTNFPNLKILYLHKN--QIEEYLSVFVLRRVNSLRTLSLYGNP-IEKIREYRAVVSTM  157 (210)
Q Consensus        84 ~L~~L~Ls~n-~i~~~--~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  157 (210)
                      +|+.|+++++ .++..  .......+++|+.|+++++  .++...-.....++++|+.|++++|. +++...   ..+..
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~---~~l~~  198 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQ  198 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGG
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh---hhhcc
Confidence            7777777765 34321  1111122456777777654  23332210223567888888888765 443322   24677


Q ss_pred             CcCcccccCCCCC
Q psy4162         158 IPQLVTLDSVFIL  170 (210)
Q Consensus       158 l~~L~~L~l~~~~  170 (210)
                      +++|+.|++++|.
T Consensus       199 ~~~L~~L~L~~C~  211 (284)
T d2astb2         199 LNYLQHLSLSRCY  211 (284)
T ss_dssp             CTTCCEEECTTCT
T ss_pred             cCcCCEEECCCCC
Confidence            8888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.6e-07  Score=75.44  Aligned_cols=115  Identities=14%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             ccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcCC----cccccCCCCccEEEccCCccCcccccccc--
Q psy4162          55 TRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSVFVL--  128 (210)
Q Consensus        55 L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~--  128 (210)
                      |+.||+++|+++... +.    ..+..+++++.|+|++|.++...    ...+..+++|+.|++++|.++..+- ..+  
T Consensus         4 l~~ld~~~~~i~~~~-~~----~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~-~~l~~   77 (460)
T d1z7xw1           4 IQSLDIQCEELSDAR-WA----ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-HCVLQ   77 (460)
T ss_dssp             EEEEEEESCCCCHHH-HH----HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH-HHHHH
T ss_pred             CCEEEeeCCcCChHH-HH----HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH-HHHHH
Confidence            889999999998743 11    33445578899999999877432    1234678889999999998865321 112  


Q ss_pred             --c-cCCCcCEEeeeCCCCCCccch-HHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         129 --R-RVNSLRTLSLYGNPIEKIREY-RAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       129 --~-~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                        . ...+|+.|++++|.+++.... -...+..+++|+.|++++|.+.+..
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~  128 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  128 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh
Confidence              1 235799999999988765321 1124566888999999998876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.3e-07  Score=71.09  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             cceeCCCCCccccchhh-hcccCCcccccCCCCCCCCCCCCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCC
Q psy4162          15 IPLDLSFQQIQSLDKVA-VQKLKPNVHRLGESPPMLVGRYDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFN   93 (210)
Q Consensus        15 ~~L~ls~n~l~~l~~~~-~~~l~~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n   93 (210)
                      +.||++.|+++...... +..+.+                 ++.|+|++|.++... +..+. ..+..+++|+.|++++|
T Consensus         5 ~~ld~~~~~i~~~~~~~l~~~l~~-----------------l~~L~L~~~~i~~~~-~~~l~-~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1           5 QSLDIQCEELSDARWAELLPLLQQ-----------------CQVVRLDDCGLTEAR-CKDIS-SALRVNPALAELNLRSN   65 (460)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTT-----------------CSEEEEESSCCCHHH-HHHHH-HHHHTCTTCCEEECTTC
T ss_pred             CEEEeeCCcCChHHHHHHHHhCCC-----------------CCEEEeCCCCCCHHH-HHHHH-HHHhcCCCCCEEECcCC
Confidence            46999999998865443 344556                 999999999887532 11111 45667789999999999


Q ss_pred             CCCcCCc----cccc-CCCCccEEEccCCccCcccc--c-cccccCCCcCEEeeeCCCCCC
Q psy4162          94 NIKNVDK----NMFT-NFPNLKILYLHKNQIEEYLS--V-FVLRRVNSLRTLSLYGNPIEK  146 (210)
Q Consensus        94 ~i~~~~~----~~~~-~~~~L~~L~l~~n~i~~~~~--~-~~~~~l~~L~~L~l~~n~l~~  146 (210)
                      +|+....    ..+. ...+|+.|++++|.++....  + ..+..+++|+.|++++|.+..
T Consensus        66 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          66 ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            8864221    1122 23579999999999876531  0 345678899999999998653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.01  E-value=1.1e-05  Score=56.52  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CCccEEEccCC-ccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCccccc--
Q psy4162          53 YDTRSLWLSHN-KISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLSV--  125 (210)
Q Consensus        53 ~~L~~L~ls~n-~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~--  125 (210)
                      +.|+.|+|+++ .++.- ++..+. ..+...+.|+.|++++|.+.....    ..+...+.|+.|++++|.+......  
T Consensus        15 ~~L~~L~L~~~~~i~~~-~~~~l~-~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKE-RIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             SSCCEEECTTCCSSCHH-HHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHH-HHHHHH-HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            45999999974 45432 222222 456677899999999999875322    2344578899999999999875421  


Q ss_pred             -cccccCCCcCEEeeeCCCCCCccch----HHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         126 -FVLRRVNSLRTLSLYGNPIEKIREY----RAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       126 -~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                       ..+...++|+.|++++|.+..+..-    -...+...++|+.|+++.+....+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~~~~  147 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARH  147 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHHH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCchHHH
Confidence             2356678899999999987654221    1235677899999999888765443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.87  E-value=6.3e-06  Score=64.16  Aligned_cols=121  Identities=17%  Similarity=0.079  Sum_probs=74.7

Q ss_pred             CCccEEEccCCccccccCCchhhhhccCCCCCCCEEECcCCCCCcC-----CcccccCCCCccEEEccCCccCcccc--c
Q psy4162          53 YDTRSLWLSHNKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNV-----DKNMFTNFPNLKILYLHKNQIEEYLS--V  125 (210)
Q Consensus        53 ~~L~~L~ls~n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~~~~L~~L~l~~n~i~~~~~--~  125 (210)
                      +.|+.+++++|.++.-.. .. +...+...+.|+.|++++|+++..     ....+..+++|+.|++++|.++....  +
T Consensus       158 ~~L~~l~l~~n~i~~~~~-~~-l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSM-KE-WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCEEECCSSCCTGGGH-HH-HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cccceeeccccccccccc-cc-ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            345555555555443210 00 113345567889999999888652     12235667889999999998765421  0


Q ss_pred             -cccccCCCcCEEeeeCCCCCCccch-HHHHHHh--CcCcccccCCCCCHHHHH
Q psy4162         126 -FVLRRVNSLRTLSLYGNPIEKIREY-RAVVSTM--IPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       126 -~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~--l~~L~~L~l~~~~~~~~~  175 (210)
                       ..+..++.|+.|++++|.+.+.... -...+..  .+.|+.||+++|.+.+..
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence             3456788899999999998754321 1123333  356889999999875543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.37  E-value=0.00013  Score=50.47  Aligned_cols=122  Identities=16%  Similarity=0.083  Sum_probs=82.8

Q ss_pred             CCCccEEEccC-CccccccCCchhhhhccCCCCCCCEEECcCCCCCcCCc----ccccCCCCccEEEccCCccCcccc--
Q psy4162          52 RYDTRSLWLSH-NKISLVYGLDSLVHRTILDPDLIGWIDLSFNNIKNVDK----NMFTNFPNLKILYLHKNQIEEYLS--  124 (210)
Q Consensus        52 l~~L~~L~ls~-n~l~~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~--  124 (210)
                      .+.|+.|++++ +.++.-. +..+. ..+...++|+.|++++|.++....    ..+....+++.+++++|.+.....  
T Consensus        16 ~~~L~~L~L~~~~~i~~~~-~~~l~-~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPT-LKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHH-HHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHH-HHHHH-HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44599999997 4565422 12222 556678899999999998876432    234567899999999998876431  


Q ss_pred             -ccccccCCCcCEEee--eCCCCCCcc-chHHHHHHhCcCcccccCCCCCHHHHH
Q psy4162         125 -VFVLRRVNSLRTLSL--YGNPIEKIR-EYRAVVSTMIPQLVTLDSVFILPSEKQ  175 (210)
Q Consensus       125 -~~~~~~l~~L~~L~l--~~n~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~  175 (210)
                       ...+...++|+.++|  ++|++.... ..-...+...++|+.|++..+....+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~~~  148 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  148 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcHHH
Confidence             134567788987666  566776432 112245778999999999888765543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.57  E-value=0.00066  Score=46.96  Aligned_cols=93  Identities=11%  Similarity=0.024  Sum_probs=65.4

Q ss_pred             ccCCCCCCCEEECcCC-CCCcCC----cccccCCCCccEEEccCCccCcccc--c-cccccCCCcCEEeeeCCCCCCccc
Q psy4162          78 TILDPDLIGWIDLSFN-NIKNVD----KNMFTNFPNLKILYLHKNQIEEYLS--V-FVLRRVNSLRTLSLYGNPIEKIRE  149 (210)
Q Consensus        78 ~~~~l~~L~~L~Ls~n-~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~  149 (210)
                      .....+.|++|+|+++ .++...    ...+....+|+.|++++|.+.....  + ..+...+.|+.|++++|.+.....
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            3445689999999974 464421    1235567889999999999876432  1 234567899999999999986432


Q ss_pred             h-HHHHHHhCcCcccccCCCCC
Q psy4162         150 Y-RAVVSTMIPQLVTLDSVFIL  170 (210)
Q Consensus       150 ~-~~~~l~~l~~L~~L~l~~~~  170 (210)
                      . -...+...++|+.|++.++.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHhCCcCCEEECCCCc
Confidence            1 11346667889999998774

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.13  E-value=0.008  Score=41.01  Aligned_cols=99  Identities=13%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             hccCCCCCCCEEECcC-CCCCcCC----cccccCCCCccEEEccCCccCccccc---cccccCCCcCEEeeeCCCCCCcc
Q psy4162          77 RTILDPDLIGWIDLSF-NNIKNVD----KNMFTNFPNLKILYLHKNQIEEYLSV---FVLRRVNSLRTLSLYGNPIEKIR  148 (210)
Q Consensus        77 ~~~~~l~~L~~L~Ls~-n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~  148 (210)
                      ......+.|+.|++++ +.++...    ...+...++|+.|++++|.+......   ..+...+.++.+++++|.+....
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            4456678999999997 4565432    12345788999999999998764320   23567789999999999988542


Q ss_pred             ch-HHHHHHhCcCccc--ccCCCCCHHHHH
Q psy4162         149 EY-RAVVSTMIPQLVT--LDSVFILPSEKQ  175 (210)
Q Consensus       149 ~~-~~~~l~~l~~L~~--L~l~~~~~~~~~  175 (210)
                      .. -...+...++|+.  |++..|.+.+..
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            21 1124566778876  555667765543